Citrus Sinensis ID: 024100
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 272 | 2.2.26 [Sep-21-2011] | |||||||
| Q5PP70 | 276 | Alpha N-terminal protein | no | no | 0.727 | 0.717 | 0.696 | 2e-79 | |
| A2XMJ1 | 307 | Alpha N-terminal protein | N/A | no | 0.738 | 0.654 | 0.528 | 5e-67 | |
| Q10CT5 | 307 | Alpha N-terminal protein | no | no | 0.738 | 0.654 | 0.523 | 7e-66 | |
| B1H2P7 | 224 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.613 | 0.745 | 0.417 | 2e-36 | |
| Q4KL94 | 224 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.613 | 0.745 | 0.417 | 5e-36 | |
| Q6NWX7 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.599 | 0.730 | 0.430 | 5e-36 | |
| Q4KLE6 | 223 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.610 | 0.744 | 0.411 | 2e-35 | |
| Q55DH6 | 270 | Alpha N-terminal protein | yes | no | 0.683 | 0.688 | 0.384 | 2e-34 | |
| Q9BV86 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.610 | 0.744 | 0.411 | 3e-34 | |
| Q8R2U4 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.610 | 0.744 | 0.4 | 8e-34 |
| >sp|Q5PP70|NTM1_ARATH Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 295 bits (756), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/204 (69%), Positives = 165/204 (80%), Gaps = 6/204 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAKENIARSGTFLLSHSL 271
FVSFF RAK + G F++ +L
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENL 199
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 4 |
| >sp|A2XMJ1|NTM1_ORYSI Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. indica GN=OsI_13745 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/231 (52%), Positives = 159/231 (68%), Gaps = 30/231 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE---------------------------- 100
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEQEAGGGG 60
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
K+ +WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK + +G F+L ++
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENI 229
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q10CT5|NTM1_ORYSJ Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0780900 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 121/231 (52%), Positives = 156/231 (67%), Gaps = 30/231 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQ------------------------ 104
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGG 60
Query: 105 ----WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK + +G F+L ++
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENI 229
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|B1H2P7|NTM1A_XENTR N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Xenopus tropicalis GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 106/175 (60%), Gaps = 8/175 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR + +G ++ ++
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNV 170
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KL94|NT1AA_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis GN=ntmt1-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 8/175 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R + + +G ++ ++
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNV 170
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q6NWX7|NTM1A_DANRE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
LQDF P+ RYDVIW+QW IGHLTDD V F +R + + G ++ ++
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNV 169
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KLE6|NT1AB_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis GN=ntmt1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 9/175 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K + +G L+ ++
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNV 169
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q55DH6|NTM1_DICDI Alpha N-terminal protein methyltransferase 1 OS=Dictyostelium discoideum GN=DDB_G0269658 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 122/203 (60%), Gaps = 17/203 (8%)
Query: 72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
SGLD +G + N E++W++++ G+D + ++K WY+ YW+GVEA+VDG+LGG V
Sbjct: 24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80
Query: 131 NEVDIKGSEAFLQMLL--SDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLE 187
+ +D+ S+ F+Q + +D P N +ALDCG+GIGR+ K L+ F VDL+E
Sbjct: 81 SPIDVVASKVFIQDFIKGTDSRPPINLN---LALDCGAGIGRVAKEFLLPIGFKNVDLVE 137
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
FLD A+ + D ++ N++ V LQDFT E +YD IW+QW IGHL D D
Sbjct: 138 QNKLFLDKAK------SDNFKDDNRVENYYAVGLQDFTFEK-KYDCIWIQWVIGHLHDLD 190
Query: 248 FVSFFKRAKENIARSGTFLLSHS 270
F+ F K+ +++ +G + +
Sbjct: 191 FIEFLKKCMDSLTPNGIICIKDN 213
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q9BV86|NTM1A_HUMAN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 9/175 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
FC LQDFTPE YDVIW+QW IGHLTD F +R K ++ +G ++ ++
Sbjct: 115 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 169
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q8R2U4|NTM1A_MOUSE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Mus musculus GN=Ntmt1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 102/175 (58%), Gaps = 9/175 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
FC LQDF+PE G YDVIW+QW IGHLTD F +R K + +G ++ ++
Sbjct: 115 FCCGLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNM 169
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1 (By similarity). Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 272 | ||||||
| 255586233 | 276 | Protein C9orf32, putative [Ricinus commu | 0.731 | 0.721 | 0.748 | 3e-85 | |
| 224115626 | 276 | predicted protein [Populus trichocarpa] | 0.731 | 0.721 | 0.709 | 2e-82 | |
| 356528088 | 336 | PREDICTED: alpha N-terminal protein meth | 0.834 | 0.675 | 0.614 | 1e-80 | |
| 449433531 | 275 | PREDICTED: alpha N-terminal protein meth | 0.731 | 0.723 | 0.684 | 6e-80 | |
| 297791381 | 335 | hypothetical protein ARALYDRAFT_494541 [ | 0.742 | 0.602 | 0.689 | 2e-79 | |
| 145358849 | 334 | methyltransferase [Arabidopsis thaliana] | 0.738 | 0.601 | 0.690 | 1e-78 | |
| 356510746 | 278 | PREDICTED: alpha N-terminal protein meth | 0.731 | 0.715 | 0.682 | 3e-78 | |
| 75321280 | 276 | RecName: Full=Alpha N-terminal protein m | 0.727 | 0.717 | 0.696 | 1e-77 | |
| 358348179 | 348 | Methyltransferase-like protein 11A [Medi | 0.731 | 0.571 | 0.640 | 2e-74 | |
| 9758698 | 252 | unnamed protein product [Arabidopsis tha | 0.610 | 0.658 | 0.755 | 4e-70 |
| >gi|255586233|ref|XP_002533771.1| Protein C9orf32, putative [Ricinus communis] gi|223526308|gb|EEF28616.1| Protein C9orf32, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/203 (74%), Positives = 170/203 (83%), Gaps = 4/203 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
MEV+G DSDG+EFKNAEEMWREQ G DG KKTQWYR+G+SYW+GVEASVDGVLGG+G
Sbjct: 1 MEVTGTDSDGREFKNAEEMWREQTG-DGT---KKTQWYRDGVSYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
VN+ DIKGSEAFLQ L S+ F + +HLVALDCGSGIGR+TKNLLIRYFNEVDLLEP
Sbjct: 57 QVNDADIKGSEAFLQTLFSELFVDGGLGRHLVALDCGSGIGRVTKNLLIRYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAAR+SL ENHMA D HKATNFFC PLQ+FTP+ G YDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARDSLINENHMASDTHKATNFFCTPLQEFTPDAGHYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKENIARSGTFLLSHSL 271
VSFF RAK + G F+L ++
Sbjct: 177 VSFFMRAKIGLKPGGFFVLKENV 199
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115626|ref|XP_002317082.1| predicted protein [Populus trichocarpa] gi|222860147|gb|EEE97694.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 169/203 (83%), Gaps = 4/203 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME +G DSDG+EFKN +EMW E G+ KKTQWYR+G++YWEGVEASV+GVLGG+G
Sbjct: 1 MEAAGTDSDGREFKNPDEMWLEHTGD----TNKKTQWYRDGVAYWEGVEASVNGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ D+KGSE FLQ LL++ F + ++HLVALDCGSGIGRITKNLLIR+FNEVDLLEP
Sbjct: 57 HVNDADVKGSEGFLQTLLAELFVDGGIDRHLVALDCGSGIGRITKNLLIRFFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAARE+L ENHMA D HKATNF+CVPLQ+FTP+ GRYDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARENLVQENHMALDKHKATNFYCVPLQEFTPDAGRYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKENIARSGTFLLSHSL 271
VSFF RAK + G F+L +L
Sbjct: 177 VSFFNRAKIGLKPGGFFVLKENL 199
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528088|ref|XP_003532637.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/244 (61%), Positives = 179/244 (73%), Gaps = 17/244 (6%)
Query: 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED 95
P+ LL R L ++ + + P ++++S M+ +GLDSDG+EFK E+MWREQ G+
Sbjct: 27 PSFSLLSTRTRTLGLTASCYSSFSFPSYRKTSCMDAAGLDSDGREFKTPEDMWREQAGD- 85
Query: 96 GEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNA-R 154
KKTQWYR+G+SYWEGV+A++DGVLGGF NVNE DI SE FL +L S+RF A
Sbjct: 86 ---PSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDITCSEDFLNILFSERFHAADA 142
Query: 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
+Q LV LDCGSGIGR+TKNLLIRYFNEVDLLEPVSHFL+ ARE+LA DMHKA
Sbjct: 143 RHQPLVVLDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLALGCQTNSDMHKAV 202
Query: 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRA------------KENIARS 262
NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+DFVSFFKRA KENIARS
Sbjct: 203 NFYCVPLQDFTPDTARYDVIWIQWCIGHLTDEDFVSFFKRAKVGLKPGGFFVLKENIARS 262
Query: 263 GTFL 266
G L
Sbjct: 263 GFVL 266
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433531|ref|XP_004134551.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] gi|449506765|ref|XP_004162842.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 139/203 (68%), Positives = 168/203 (82%), Gaps = 4/203 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME SG D+DG EFKNAEEMWRE +G K+T+WYREG+ YW+GVEASVDGVLGG+G
Sbjct: 1 MEGSGADTDGHEFKNAEEMWREHVG----NPTKRTEWYREGVGYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ DI GSE FL+ +L +RF A ++ LVALDCGSGIGR+TKNLLI+YFNEVDLLEP
Sbjct: 57 HVNDADILGSEVFLKSILVERFSFAGKDRPLVALDCGSGIGRVTKNLLIKYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AAR +LAPEN+ D+HKATNFFC+PLQ+FTP+ GRYDVIWVQWCIGHLTD+DF
Sbjct: 117 VSHFLEAARGNLAPENNGPSDLHKATNFFCMPLQEFTPDAGRYDVIWVQWCIGHLTDEDF 176
Query: 249 VSFFKRAKENIARSGTFLLSHSL 271
+SFFKRAK + G F+L ++
Sbjct: 177 ISFFKRAKLGLKAGGIFILKENI 199
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791381|ref|XP_002863575.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] gi|297309410|gb|EFH39834.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/206 (68%), Positives = 168/206 (81%), Gaps = 4/206 (1%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S +ME+ G+DS+GKEF + +EMWRE+IGE+G++ +KTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 57 SESMEICGVDSEGKEFNSVQEMWREEIGEEGDET-RKTQWYRDGVSYWEGVEASVDGVLG 115
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDL 185
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDL
Sbjct: 116 GYGHVNDADIIGSEVFLKTLLQERLVNVGPNQHLVALDCGSGIGRITKNLLIRYFNEVDL 175
Query: 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD 245
LEPV+ FLDAARE+LA HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD
Sbjct: 176 LEPVAQFLDAARENLAS---AGSKTHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTD 232
Query: 246 DDFVSFFKRAKENIARSGTFLLSHSL 271
+DFVSFF AK + G F++ +L
Sbjct: 233 NDFVSFFNCAKGCLKPGGFFVVKENL 258
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358849|ref|NP_199258.3| methyltransferase [Arabidopsis thaliana] gi|332007727|gb|AED95110.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/207 (69%), Positives = 168/207 (81%), Gaps = 6/207 (2%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S++M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 56 SNSMDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLG 113
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVD 184
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVD
Sbjct: 114 GYGHVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVD 173
Query: 185 LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT 244
LLEPV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLT
Sbjct: 174 LLEPVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLT 230
Query: 245 DDDFVSFFKRAKENIARSGTFLLSHSL 271
D+DFVSFF RAK + G F++ +L
Sbjct: 231 DNDFVSFFNRAKGYLKPGGFFVVKENL 257
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510746|ref|XP_003524095.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/205 (68%), Positives = 163/205 (79%), Gaps = 6/205 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ GLDSDG+EF AE+MWREQ G+ KKTQWYR+G+SYWEGV+A++DGVLGGF
Sbjct: 1 MDAGGLDSDGREFNTAEDMWREQAGD----PSKKTQWYRDGVSYWEGVKANMDGVLGGFA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARN--NQHLVALDCGSGIGRITKNLLIRYFNEVDLL 186
NVNE DI SE FL +LLS+RFP A + Q LVALDCGSGIGR+TKNLLIRYFNEVDLL
Sbjct: 57 NVNEPDISCSEDFLNILLSERFPPAADARRQPLVALDCGSGIGRVTKNLLIRYFNEVDLL 116
Query: 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD 246
EPVSHFL+ ARE+LA DMHKA NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+
Sbjct: 117 EPVSHFLETARETLASGCQTNSDMHKAVNFYCVPLQDFTPDTARYDVIWIQWCIGHLTDE 176
Query: 247 DFVSFFKRAKENIARSGTFLLSHSL 271
DFVSFFK AK + G F+L ++
Sbjct: 177 DFVSFFKSAKVGLKAGGFFVLKENI 201
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75321280|sp|Q5PP70.1|NTM1_ARATH RecName: Full=Alpha N-terminal protein methyltransferase 1; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1; Short=NTM1 gi|56121880|gb|AAV74221.1| At5g44450 [Arabidopsis thaliana] gi|57222192|gb|AAW39003.1| At5g44450 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/204 (69%), Positives = 165/204 (80%), Gaps = 6/204 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAKENIARSGTFLLSHSL 271
FVSFF RAK + G F++ +L
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENL 199
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348179|ref|XP_003638126.1| Methyltransferase-like protein 11A [Medicago truncatula] gi|355504061|gb|AES85264.1| Methyltransferase-like protein 11A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 130/203 (64%), Positives = 161/203 (79%), Gaps = 4/203 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ G DS+G+E+K A+EMW+EQ G+ KKT WYR+G+SYWEGV A+VDGVLGG+
Sbjct: 1 MDAGGSDSNGREYKTADEMWKEQTGD----PNKKTLWYRQGVSYWEGVNATVDGVLGGYA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VNE DI S+ FL+++LS+RF Q LVALDCGSGIGR+TKNLLIR+FNEVDLLEP
Sbjct: 57 DVNEPDITCSDDFLKIILSERFNADAKTQPLVALDCGSGIGRVTKNLLIRHFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AARE+L + DMHKA NF+CVPLQDFTP+ GRYDVIW+QWCIGHLTDDDF
Sbjct: 117 VSHFLEAARETLTSGEYTNSDMHKAVNFYCVPLQDFTPDVGRYDVIWIQWCIGHLTDDDF 176
Query: 249 VSFFKRAKENIARSGTFLLSHSL 271
++FFKRAK + G F+L ++
Sbjct: 177 ITFFKRAKVGLKPGGLFVLKENI 199
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9758698|dbj|BAB09152.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 130/172 (75%), Positives = 144/172 (83%), Gaps = 6/172 (3%)
Query: 87 MWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLL 146
MWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G+VN+ DI GSE FL+ LL
Sbjct: 1 MWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYGHVNDADIIGSEVFLKTLL 58
Query: 147 SDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
+R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV+ FLDAARE+LA
Sbjct: 59 QERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVAQFLDAARENLAS--- 115
Query: 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKE 257
+ HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+DFVSFF RAK+
Sbjct: 116 AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDNDFVSFFNRAKD 167
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 272 | ||||||
| DICTYBASE|DDB_G0269658 | 270 | DDB_G0269658 "Methyltransferas | 0.665 | 0.670 | 0.402 | 1.9e-35 | |
| UNIPROTKB|B1H2P7 | 224 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.613 | 0.745 | 0.417 | 3.1e-35 | |
| UNIPROTKB|Q4KL94 | 224 | ntmt1-a "N-terminal Xaa-Pro-Ly | 0.613 | 0.745 | 0.417 | 6.5e-35 | |
| ZFIN|ZDB-GENE-040426-2055 | 223 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.599 | 0.730 | 0.430 | 1.3e-34 | |
| UNIPROTKB|Q4KLE6 | 223 | ntmt1-b "N-terminal Xaa-Pro-Ly | 0.610 | 0.744 | 0.411 | 3.6e-34 | |
| UNIPROTKB|F1MKD1 | 223 | METTL11A "Uncharacterized prot | 0.599 | 0.730 | 0.418 | 2.5e-33 | |
| UNIPROTKB|Q9BV86 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.599 | 0.730 | 0.412 | 4.1e-33 | |
| UNIPROTKB|D2H163 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.599 | 0.730 | 0.412 | 8.5e-33 | |
| MGI|MGI:1913867 | 223 | Ntmt1 "N-terminal Xaa-Pro-Lys | 0.599 | 0.730 | 0.401 | 8.5e-33 | |
| UNIPROTKB|E2RQP1 | 223 | NTMT1 "Uncharacterized protein | 0.599 | 0.730 | 0.406 | 1.4e-32 |
| DICTYBASE|DDB_G0269658 DDB_G0269658 "Methyltransferase-like protein 11A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 78/194 (40%), Positives = 119/194 (61%)
Query: 72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
SGLD +G + N E++W++++ G+D + ++K WY+ YW+GVEA+VDG+LGG V
Sbjct: 24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV 189
+ +D+ S+ F+Q + N +L ALDCG+GIGR+ K L+ F VDL+E
Sbjct: 81 SPIDVVASKVFIQDFIKGTDSRPPINLNL-ALDCGAGIGRVAKEFLLPIGFKNVDLVEQN 139
Query: 190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFV 249
FLD A+ +N D ++ N++ V LQDFT E +YD IW+QW IGHL D DF+
Sbjct: 140 KLFLDKAKS----DNFK--DDNRVENYYAVGLQDFTFEK-KYDCIWIQWVIGHLHDLDFI 192
Query: 250 SFFKRAKENIARSG 263
F K+ +++ +G
Sbjct: 193 EFLKKCMDSLTPNG 206
|
|
| UNIPROTKB|B1H2P7 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 73/175 (41%), Positives = 106/175 (60%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR + +G ++ ++
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNV 170
|
|
| UNIPROTKB|Q4KL94 ntmt1-a "N-terminal Xaa-Pro-Lys N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 73/175 (41%), Positives = 108/175 (61%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R + + +G ++ ++
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNV 170
|
|
| ZFIN|ZDB-GENE-040426-2055 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 74/172 (43%), Positives = 102/172 (59%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
LQDF P+ RYDVIW+QW IGHLTDD V F +R + + G ++ ++
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNV 169
|
|
| UNIPROTKB|Q4KLE6 ntmt1-b "N-terminal Xaa-Pro-Lys N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 72/175 (41%), Positives = 108/175 (61%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K + +G L+ ++
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNV 169
|
|
| UNIPROTKB|F1MKD1 METTL11A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 72/172 (41%), Positives = 102/172 (59%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + PN +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
LQDF+PE YDVIW+QW IGHLTD F +R K + +G ++ ++
Sbjct: 118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNM 169
|
|
| UNIPROTKB|Q9BV86 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 71/172 (41%), Positives = 102/172 (59%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
LQDFTPE YDVIW+QW IGHLTD F +R K ++ +G ++ ++
Sbjct: 118 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 169
|
|
| UNIPROTKB|D2H163 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Ailuropoda melanoleuca (taxid:9646)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 71/172 (41%), Positives = 101/172 (58%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYLKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL AR L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLIKARTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
LQDF+PE YDVIW+QW IGHLTD F +R K+ + +G ++ ++
Sbjct: 118 GLQDFSPEPNSYDVIWIQWVIGHLTDQHLAEFLRRCKQGLRPNGIIVIKDNM 169
|
|
| MGI|MGI:1913867 Ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 69/172 (40%), Positives = 101/172 (58%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
LQDF+PE G YDVIW+QW IGHLTD F +R K + +G ++ ++
Sbjct: 118 GLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNM 169
|
|
| UNIPROTKB|E2RQP1 NTMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 70/172 (40%), Positives = 101/172 (58%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
LQDF+PE YDVIW+QW IGHLTD F +R K+ + +G ++ ++
Sbjct: 118 GLQDFSPEPNSYDVIWIQWVIGHLTDQHLAEFLRRCKQGLRPNGIIVIKDNM 169
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 272 | |||
| pfam05891 | 217 | pfam05891, Methyltransf_PK, AdoMet dependent proli | 5e-86 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 2e-04 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.001 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 0.001 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.002 |
| >gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 5e-86
Identities = 91/167 (54%), Positives = 121/167 (72%), Gaps = 8/167 (4%)
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
+ Q+Y + I+YWEGV A+VDG+LGG+G+V+++D+ GS FL+ LL +R P +HLV
Sbjct: 1 DEEQFYSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRLLRERLPGK--RRHLV 58
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCG+GIGR+TKNLL+ F++VDL+EPV FL A+E LA K NFFCV
Sbjct: 59 ALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKK------KVGNFFCVG 112
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267
LQDFTPE GRYD+IW+QWCIGHLTD+D V+F KR K + +G ++
Sbjct: 113 LQDFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKGGLKPNGFIVV 159
|
This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 19/127 (14%)
Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
L LD G G G +T+ L++ F + + + D + LA
Sbjct: 23 LLALLKEKGIFIPASVLDIGCGTGYLTR-ALLKRFPQAEFI-----ANDISAGMLA---Q 73
Query: 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAKENIAR 261
+ + F C + E +D+I +QWC DD +
Sbjct: 74 AKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC------DDLSQALSELARVLKP 127
Query: 262 SGTFLLS 268
G S
Sbjct: 128 GGLLAFS 134
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.001
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + L V ++ L+ AR++ A
Sbjct: 3 LDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDA 56
Query: 222 QDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268
++ PE +DVI + HL +D F + A+ + G +L+
Sbjct: 57 EELPPEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 18/100 (18%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + + L R V ++ L AR+ + + +P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAED-------LPF 53
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIAR 261
D +DV+ + HL D +RA IAR
Sbjct: 54 PD-----ESFDVVVSSLVLHHLPD------PERALREIAR 82
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR+ + L + V ++ L+ A+E L + F
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP-------KVRFVVAD 53
Query: 221 LQDFTPETGRYDVIWVQWC-IGHLTDDDFVSFFKRAKENIARSG 263
+D E G +D++ + +L+ + + A + G
Sbjct: 54 ARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 272 | |||
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.84 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.82 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.81 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.8 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.8 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.78 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.77 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.76 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.76 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.75 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.75 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.74 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.73 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.73 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.73 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.72 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.71 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.71 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.71 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.7 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.7 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.69 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.68 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.67 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.67 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.66 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.66 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.66 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.66 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.65 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.65 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.64 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.64 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.64 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.64 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.63 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.63 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.63 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.62 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.62 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.62 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.62 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.61 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.61 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.61 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.6 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.59 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.58 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.57 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.57 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.56 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.55 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.54 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.54 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.53 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.52 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.52 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.52 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.51 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.51 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.51 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.51 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.5 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.5 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.49 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.48 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.45 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.44 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.44 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.43 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.43 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.43 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.42 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.41 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.37 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.36 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.36 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.35 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.34 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.34 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.33 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.32 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.32 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.31 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.31 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.29 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.28 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.28 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.27 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.27 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.26 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.25 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.24 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.24 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.24 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.24 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.23 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.22 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.22 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.22 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.21 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.21 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.19 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.19 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.18 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.18 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.18 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.16 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.16 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.15 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.15 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.14 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.14 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.13 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.13 | |
| PLN02366 | 308 | spermidine synthase | 99.12 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.1 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.1 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.09 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.09 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.08 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.07 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.07 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.07 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.07 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.06 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.04 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.03 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.03 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.03 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.03 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.02 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.01 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.01 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.99 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.99 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.98 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.96 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.96 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.91 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.9 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.89 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.89 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.86 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.84 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.84 | |
| PLN02476 | 278 | O-methyltransferase | 98.84 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.84 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.8 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.79 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.78 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.78 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.76 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.75 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.75 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.75 | |
| PLN02823 | 336 | spermine synthase | 98.74 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.73 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.72 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.72 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.7 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.7 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.69 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.69 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.69 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.6 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.59 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.59 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.55 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.53 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.53 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.53 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.53 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.52 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.52 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.5 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.49 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.48 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.44 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.43 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.42 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.39 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.38 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.34 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.33 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.33 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.31 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.31 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.3 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.29 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.28 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.28 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.26 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.25 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.25 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.24 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.2 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.2 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.19 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.17 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.12 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.11 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.1 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.1 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.09 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.09 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.09 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.09 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.03 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.98 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.98 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.93 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.92 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.89 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.88 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.84 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.83 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.8 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.77 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.75 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.7 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.68 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.68 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.66 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.66 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.64 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.63 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.59 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.59 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.5 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.47 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.44 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.27 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.17 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.15 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.14 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.08 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.07 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.07 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.05 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.98 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.94 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.84 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.8 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.78 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.76 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.65 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.64 | |
| PHA01634 | 156 | hypothetical protein | 96.46 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.43 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 96.36 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.22 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.16 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.13 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.08 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.98 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 95.96 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.93 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.88 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 95.81 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 95.62 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.11 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.1 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.09 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.06 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.05 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.0 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.98 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 94.73 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 94.36 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 94.29 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.09 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.84 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.78 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.73 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 93.22 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.09 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.09 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 92.9 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.6 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 92.53 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 92.18 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 92.07 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 91.93 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.86 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 91.73 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.65 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 91.36 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 91.33 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 91.06 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.94 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 90.55 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 90.53 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 90.52 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.15 | |
| PRK13699 | 227 | putative methylase; Provisional | 89.96 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 88.99 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 88.85 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.82 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 88.62 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 88.24 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 87.87 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 87.85 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 87.82 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 86.97 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 86.67 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 85.64 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 85.45 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 84.35 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 84.15 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 84.13 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 83.93 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 83.72 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 83.29 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 82.98 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 82.96 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 82.69 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 82.49 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 82.29 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 82.0 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 81.98 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 81.97 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 81.48 | |
| PRK13699 | 227 | putative methylase; Provisional | 81.13 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 80.95 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 80.52 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 80.45 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 80.32 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 80.29 |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=258.14 Aligned_cols=162 Identities=51% Similarity=1.026 Sum_probs=130.8
Q ss_pred hhHHHHHHHhhhhcchhhhhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC
Q 024100 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (272)
Q Consensus 102 ~~~~y~~~~~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~ 181 (272)
+..||.++.+||++++++++||+|||.++|..|+.+|+.||..+.....+ +.....++||||||+||+|..+|.+.|.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 35799999999999999999999999999999999999999988764321 1345679999999999999999989999
Q ss_pred cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhccc
Q 024100 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIAR 261 (272)
Q Consensus 182 ~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkp 261 (272)
.|++||+++.+++.|++.+.. ......++++..+++|.|++++||+||++||+.||||++++.||++|+..|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~------~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGK------DNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCC------GGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhcc------cCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999998753 23467899999999999877899999999999999999999999999999999
Q ss_pred CcEEEEecCC
Q 024100 262 SGTFLLSHSL 271 (272)
Q Consensus 262 gG~liv~E~~ 271 (272)
+|.|++.||+
T Consensus 154 ~G~IvvKEN~ 163 (218)
T PF05891_consen 154 NGVIVVKENV 163 (218)
T ss_dssp EEEEEEEEEE
T ss_pred CcEEEEEecC
Confidence 9999999985
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=165.95 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=95.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||||||||.++..+ ++.. .+|+++|+|+.||+.|++++... ...+++|+.+|++++|+++++||+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~-~k~~g~g~v~~~D~s~~ML~~a~~k~~~~------~~~~i~fv~~dAe~LPf~D~sFD~ 122 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLL-AKSVGTGEVVGLDISESMLEVAREKLKKK------GVQNVEFVVGDAENLPFPDNSFDA 122 (238)
T ss_pred CCCCEEEEecCCccHHHHHH-HHhcCCceEEEEECCHHHHHHHHHHhhcc------CccceEEEEechhhCCCCCCccCE
Confidence 36889999999999999977 5665 69999999999999999998543 233499999999999999999999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
|.+++.|++++|.+ ++|++++|+|||||.+++.|..
T Consensus 123 vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 123 VTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred EEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcC
Confidence 99999999999888 9999999999999999998853
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-20 Score=165.57 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=81.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||||.++..++.... ..|+++|+|+.|++.|++++... ...+++++++|++++++++++||
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------~~~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------GLQNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT------T--SEEEEE-BTTB--S-TT-EE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh------CCCCeeEEEcCHHHhcCCCCcee
Confidence 35677999999999999997743333 48999999999999999997542 23489999999999999889999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++++.+++++|.+ +++++++|+|||||.+++.|
T Consensus 119 ~v~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 119 AVTCSFGLRNFPDRE--RALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEEEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EEEHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEee
Confidence 999999999998877 99999999999999998876
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=134.08 Aligned_cols=94 Identities=21% Similarity=0.375 Sum_probs=80.5
Q ss_pred eEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhh
Q 024100 162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240 (272)
Q Consensus 162 LDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl 240 (272)
||+|||+|..+..+ ++. ..+|+++|+|+.|++.+++... ...+.+.++|++++++++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l-~~~~~~~v~~~D~~~~~~~~~~~~~~---------~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAAL-AKRGGASVTGIDISEEMLEQARKRLK---------NEGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHH-HHTTTCEEEEEES-HHHHHHHHHHTT---------TSTEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHH-HhccCCEEEEEeCCHHHHHHHHhccc---------ccCchheeehHHhCccccccccccccccce
Confidence 89999999999988 466 8899999999999999999873 235669999999999888999999999999
Q ss_pred hhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 241 GHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 241 ~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+++.+ .+++++.|+|||||++++
T Consensus 71 ~~~~~~~--~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDPE--AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSSHHH--HHHHHHHHHEEEEEEEEE
T ss_pred eeccCHH--HHHHHHHHHcCcCeEEeC
Confidence 9995555 999999999999999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-19 Score=158.80 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=91.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||||.++..+ ++. . .+|+++|+|+.|++.|+++.... ......+++++++|++++++++++|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~l-a~~~~~~~~V~gvD~S~~ml~~A~~r~~~~---~~~~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLL-SEKVGSDGKVMGLDFSSEQLAVAASRQELK---AKSCYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHH-HHHhCCCCEEEEEECCHHHHHHHHHHhhhh---hhccCCCeEEEEcccccCCCCCCCE
Confidence 456779999999999999977 454 3 38999999999999998775311 0112357999999999998888899
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++++++||++++. .+++++.++|+|||.+++.|
T Consensus 147 D~V~~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 147 DAITMGYGLRNVVDRL--KAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred eEEEEecccccCCCHH--HHHHHHHHHcCcCcEEEEEE
Confidence 9999999999998776 99999999999999998875
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=163.83 Aligned_cols=105 Identities=20% Similarity=0.314 Sum_probs=90.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||||||+|.++..+ ++.+.+|++||+|++|++.|+++.... ....++.|++++++++++.+++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~L-a~~g~~V~GID~s~~~i~~Ar~~~~~~-----~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPL-ARMGATVTGVDAVDKNVKIARLHADMD-----PVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhc-----CcccceeEEecCHHHhhhccCCCCEEEE
Confidence 4569999999999999977 577889999999999999999875321 1124789999999988766679999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
..+|+|++|++ .+++++.++|+|||.+++..
T Consensus 205 ~~vLeHv~d~~--~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHVANPA--EFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 99999999887 99999999999999998763
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=160.03 Aligned_cols=155 Identities=29% Similarity=0.487 Sum_probs=129.1
Q ss_pred HHHHHHHhhhhcchhhhhc-cccCCCCCcc---hhhhhHHHHHHHHHhcc-CCC-ccCCCCCeeeEeecccchHHHHHHH
Q 024100 104 QWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDR-FPN-ARNNQHLVALDCGSGIGRITKNLLI 177 (272)
Q Consensus 104 ~~y~~~~~YW~~~~~~~~~-~lggy~~~s~---~d~~~s~~~L~~ll~~~-l~~-~~~~~~~~VLDiGcGtG~~t~~LLa 177 (272)
.+|.++..||..+..+.+| ++++|.+.+. .++..+..++..+..+. ++. .++.....++|||.|+|+++..++.
T Consensus 118 ~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~ 197 (342)
T KOG3178|consen 118 QFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLS 197 (342)
T ss_pred HHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHH
Confidence 5789999999999999999 8999988666 89999999998887632 221 1234457899999999999999975
Q ss_pred hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHH
Q 024100 178 RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKE 257 (272)
Q Consensus 178 ~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r 257 (272)
.|+++++|++..+.+..+...+. +.|..+-+|+.+-.| +-|+||+.|+|||++|++.+++|++|++
T Consensus 198 -~fp~ik~infdlp~v~~~a~~~~----------~gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLknC~~ 263 (342)
T KOG3178|consen 198 -KYPHIKGINFDLPFVLAAAPYLA----------PGVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKNCKK 263 (342)
T ss_pred -hCCCCceeecCHHHHHhhhhhhc----------CCcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHHHHH
Confidence 99999999999999988888762 236777777644333 3569999999999999999999999999
Q ss_pred hcccCcEEEEecCCC
Q 024100 258 NIARSGTFLLSHSLI 272 (272)
Q Consensus 258 ~LkpgG~liv~E~~~ 272 (272)
.|+|||.|++.|+++
T Consensus 264 sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 264 SLPPGGKIIVVENVT 278 (342)
T ss_pred hCCCCCEEEEEeccC
Confidence 999999999999864
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=158.67 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=91.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||||||+|.++..++...+.+|++||+|+.|++.|+++.... ....+++|.++|+.++++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~-----g~~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ-----GLSDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEcCcccCCCCCCCccEEE
Confidence 466799999999999999885334679999999999999999876432 223579999999999887778999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+++|++|.. .+|+++.++|+|||.+++.+
T Consensus 192 s~~~~~h~~d~~--~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPDKR--KFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999999998766 99999999999999998764
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-18 Score=151.51 Aligned_cols=133 Identities=18% Similarity=0.251 Sum_probs=103.1
Q ss_pred hccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhc
Q 024100 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (272)
Q Consensus 121 ~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l 200 (272)
+.+|| ...++...+.....++..+ .+.+..+|||||||+|..+..++.....+|+++|+|+.|++.|+++.
T Consensus 25 e~~~g-~~~~~~gg~~~~~~~l~~l--------~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~ 95 (263)
T PTZ00098 25 EFIFG-EDYISSGGIEATTKILSDI--------ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRN 95 (263)
T ss_pred HHHhC-CCCCCCCchHHHHHHHHhC--------CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHc
Confidence 34554 2334444444444444432 24677899999999999999775334569999999999999999886
Q ss_pred cccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 201 APENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 201 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
.. ..++.|.++|+.+.++++++||+|++..+++|++..+...+|++++++|+|||.+++.|.
T Consensus 96 ~~--------~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 96 SD--------KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred Cc--------CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 31 357999999998877767899999999999999866677999999999999999998763
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=131.92 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=87.0
Q ss_pred CCeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-CCCCCCCCcceee
Q 024100 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI 234 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fDlI 234 (272)
+.+|||+|||+|.++..++ + .+.+|++||+|+.|++.|++++... ....+++|+++|+ ...... +.||+|
T Consensus 2 ~~~vLDlGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~-~~~D~v 74 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALA-RLFPGARVVGVDISPEMLEIARERAAEE-----GLSDRITFVQGDAEFDPDFL-EPFDLV 74 (112)
T ss_dssp TCEEEEETTTTSHHHHHHH-HHHTTSEEEEEESSHHHHHHHHHHHHHT-----TTTTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred CCEEEEEcCcCCHHHHHHH-hcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECccccCcccC-CCCCEE
Confidence 5689999999999999885 5 6789999999999999999998321 2457999999999 444433 479999
Q ss_pred Eech-hhhhcCh-hhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQW-CIGHLTD-DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~-vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+ +++++.. ++..++++++.+.|+|||++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999 6665554 567799999999999999999864
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-18 Score=145.89 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=89.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|..+..| ++.+.+|+++|+|+.|++.++++.... ...++++.+.|+.+++++ ++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~L-a~~g~~V~gvD~S~~~i~~a~~~~~~~------~~~~v~~~~~d~~~~~~~-~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYL-AANGFDVTAWDKNPMSIANLERIKAAE------NLDNLHTAVVDLNNLTFD-GEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHc------CCCcceEEecChhhCCcC-CCcCEEE
Confidence 35679999999999999987 577789999999999999999876432 234688999999887664 5799999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.++||++..+...+++++.++|+|||++++.
T Consensus 101 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999998778889999999999999986554
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=154.28 Aligned_cols=212 Identities=17% Similarity=0.201 Sum_probs=136.0
Q ss_pred cCCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhcc---ccc----chhhhhHHH
Q 024100 34 AKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGE---DGE----QQEKKTQWY 106 (272)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~---~~~----~~~~~~~~y 106 (272)
....+-|+.+||+|++++.+++++++.- .| ++.|++.|.+.+| .+|+..+.+...+. +.. ..+++..|-
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l-~~-g~~i~~~G~~~~g--~~s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~ 150 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLL-PV-GTDIFVVGENRSG--VRSAEKMLADYAPLNKIDSARRCGLYHGRLEKQ 150 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhC-CC-CCEEEEEEecccc--HHHHHHHHHHhcCccccccceeEEEEEEecccc
Confidence 3567789999999999999999999954 33 8899999999999 34555555543321 100 000111111
Q ss_pred H--HHHhhhhcchhhhhc-cccCC-CCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC-
Q 024100 107 R--EGISYWEGVEASVDG-VLGGF-GNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN- 181 (272)
Q Consensus 107 ~--~~~~YW~~~~~~~~~-~lggy-~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~- 181 (272)
. ...+||..-. ..+ -+... .-++...++....++...+. ....++|||+|||+|.++..++ +.++
T Consensus 151 ~~~~~~~~~~~y~--~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~-------~~~~g~VLDlGCG~G~ls~~la-~~~p~ 220 (342)
T PRK09489 151 PVFDADKFWKEYQ--VDGLTVKTLPGVFSRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSAVLA-RHSPK 220 (342)
T ss_pred CCCcccccceeee--cCCEEEEeCCCCCCCCCCCHHHHHHHHhcc-------ccCCCeEEEeccCcCHHHHHHH-HhCCC
Confidence 0 1244564221 111 00000 11223333333333433332 1234589999999999999874 6554
Q ss_pred -cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcC---hhhHHHHHHHHHH
Q 024100 182 -EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT---DDDFVSFFKRAKE 257 (272)
Q Consensus 182 -~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~---d~~~~~~l~~~~r 257 (272)
+|+++|+|+.|++.|++++... .....++..|+... .+++||+|+++..+|+.. ......+++++.+
T Consensus 221 ~~v~~vDis~~Al~~A~~nl~~n-------~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~ 291 (342)
T PRK09489 221 IRLTLSDVSAAALESSRATLAAN-------GLEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVR 291 (342)
T ss_pred CEEEEEECCHHHHHHHHHHHHHc-------CCCCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHH
Confidence 8999999999999999987532 12356777776543 246899999999987632 2345689999999
Q ss_pred hcccCcEEEEe
Q 024100 258 NIARSGTFLLS 268 (272)
Q Consensus 258 ~LkpgG~liv~ 268 (272)
.|+|||.++++
T Consensus 292 ~LkpgG~L~iV 302 (342)
T PRK09489 292 HLNSGGELRIV 302 (342)
T ss_pred hcCcCCEEEEE
Confidence 99999988654
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-18 Score=131.78 Aligned_cols=95 Identities=22% Similarity=0.422 Sum_probs=80.8
Q ss_pred eeEeecccchHHHHHHHhcC-----CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 161 ALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 161 VLDiGcGtG~~t~~LLa~~~-----~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
|||+|||+|+.+..++ +.+ .+++++|+|+.|++.++++... ....++|++.|+.++++..++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~-~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-------~~~~~~~~~~D~~~l~~~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALA-RRFDAGPSSRVIGVDISPEMLELAKKRFSE-------DGPKVRFVQADARDLPFSDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHH-HHS-----SEEEEEES-HHHHHHHHHHSHH-------TTTTSEEEESCTTCHHHHSSSEEEEE
T ss_pred CEEeecCCcHHHHHHH-HHhhhcccceEEEEECCHHHHHHHHHhchh-------cCCceEEEECCHhHCcccCCCeeEEE
Confidence 7999999999999885 655 7999999999999999998743 23388999999999887677999999
Q ss_pred ech-hhhhcChhhHHHHHHHHHHhcccCc
Q 024100 236 VQW-CIGHLTDDDFVSFFKRAKENIARSG 263 (272)
Q Consensus 236 s~~-vl~hl~d~~~~~~l~~~~r~LkpgG 263 (272)
+.+ +++|+++++...+|+++.++|+|||
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 965 4999999999999999999999998
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-18 Score=149.61 Aligned_cols=102 Identities=21% Similarity=0.341 Sum_probs=91.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
+..+|||+|||.|.++..+ |+.+..|+++|.|+++|+.|+..... ..-+++|.+...+++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~m-Ar~Ga~VtgiD~se~~I~~Ak~ha~e-------~gv~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPL-ARLGASVTGIDASEKPIEVAKLHALE-------SGVNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHH-HHCCCeeEEecCChHHHHHHHHhhhh-------ccccccchhhhHHHHHhcCCCccEEEE
Confidence 5679999999999999999 69999999999999999999987643 344678999998888655579999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+|+|++|++ .|++.|.+.+||||.++++
T Consensus 131 mEVlEHv~dp~--~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 131 MEVLEHVPDPE--SFLRACAKLVKPGGILFLS 160 (243)
T ss_pred hhHHHccCCHH--HHHHHHHHHcCCCcEEEEe
Confidence 99999999999 8999999999999999876
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=135.36 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=88.4
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 232 (272)
++.+|||+|||+|.++..++... ..+++++|.|+.|++.|++.+... ...+++|+++|+++++ ++ +.||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------~~~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------GLDNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT------TSTTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc------cccccceEEeehhccccccC-CCee
Confidence 46699999999999999885233 458999999999999999976532 3448999999999976 43 6899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++..+++|++++. .+|+++.+.|++||.+++.+
T Consensus 76 ~I~~~~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 76 IIISNGVLHHFPDPE--KVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp EEEEESTGGGTSHHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCchhhccCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999999999998887 99999999999999998765
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=145.14 Aligned_cols=109 Identities=10% Similarity=0.204 Sum_probs=91.2
Q ss_pred CCCCeeeEeecccchHHHHHHHh---cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~---~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.+..+|||+|||+|..+..++.. ...+++++|+|+.|++.|++++... ....+++++++|+.+++++ .+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-----~~~~~v~~~~~d~~~~~~~--~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----KAPTPVDVIEGDIRDIAIE--NAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEeCChhhCCCC--CCC
Confidence 35679999999999999877431 2358999999999999999988532 1234799999999888654 599
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++++++||+++++...+++++++.|+|||.+++.|.+
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999999998877789999999999999999998743
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-17 Score=146.96 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=83.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.|++. ++++.++|++++. ++++||
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~-~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLA-RRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCC-CCCCce
Confidence 3466799999999999999884 55 45899999999999999752 4689999998875 346999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++.++||++++. .++++++++|+|||.+++.
T Consensus 92 ~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 92 VVVSNAALQWVPEHA--DLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEEehhhhhCCCHH--HHHHHHHHhCCCCcEEEEE
Confidence 999999999998766 9999999999999999875
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-17 Score=145.65 Aligned_cols=105 Identities=16% Similarity=0.311 Sum_probs=86.0
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+.+|||+|||+|-++.+| ++.+.+|+|||+++.|++.|++...........-..+++|.+.++++.. +.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepL-Arlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPL-ARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhh-HhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 467999999999999999 6999999999999999999998832211000011124778888888874 359999999
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+++|+.|+. .++..|.+.|+|||.+|++
T Consensus 166 evleHV~dp~--~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 166 EVLEHVKDPQ--EFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred HHHHHHhCHH--HHHHHHHHHhCCCCceEee
Confidence 9999998887 9999999999999999875
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-17 Score=139.87 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=86.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|+++..+ ++.+.+|+++|+|+.|++.++++.... .-.+.+.+.|+..++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~l-a~~g~~V~~iD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYL-SLAGYDVRAWDHNPASIASVLDMKARE-------NLPLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHH-HHCCCeEEEEECCHHHHHHHHHHHHHh-------CCCceeEeccchhcccc-CCCCEEEE
Confidence 4579999999999999977 577789999999999999998876421 12367788888766554 58999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.++||++.++...++++++++|+|||++++.+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 999999987777899999999999999866543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-17 Score=146.18 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=89.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ....+++++++|++++. ..+++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~l-a~~g~~v~~vD~s~~~l~~a~~~~~~~-----g~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKL-AELGHQVILCDLSAEMIQRAKQAAEAK-----GVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHhc-----CCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 4569999999999999988 577889999999999999999987532 12357899999998764 3457999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.+++|++++. .+|+++.++|+|||.+++.
T Consensus 118 ~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEWVADPK--SVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEE
Confidence 999999998887 9999999999999998754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=140.45 Aligned_cols=107 Identities=11% Similarity=0.115 Sum_probs=91.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..++ +. . .+|+++|+|+.|++.|++++... ...+++++++|+.++++++++|
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la-~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALA-EAVGPEGHVIGLDFSENMLSVGRQKVKDA------GLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEEechhcCCCCCCCc
Confidence 4567799999999999999774 54 2 48999999999999999987432 2357899999998887666799
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+|++.++++|+++.. ++++++.++|+|||.+++.|.
T Consensus 116 D~V~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYM--QVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cEEEEecccccCCCHH--HHHHHHHHHcCcCeEEEEEEC
Confidence 9999999999998776 999999999999999987663
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=141.15 Aligned_cols=99 Identities=16% Similarity=0.288 Sum_probs=86.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ +..+.+|+++|+|+.|++.|+++.. ...++++|++++++.+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l-~~~~~~v~~~D~s~~~l~~a~~~~~-----------~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYW-RERGSQVTALDLSPPMLAQARQKDA-----------ADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHH-HHcCCeEEEEECCHHHHHHHHhhCC-----------CCCEEEcCcccCcCCCCcEEEEEE
Confidence 4678999999999999977 5778899999999999999998752 347889999998877779999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.+++++++.. .+|+++.++|+|||.+++..
T Consensus 110 ~~~l~~~~d~~--~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGNLS--TALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CchhhhcCCHH--HHHHHHHHHcCCCeEEEEEe
Confidence 99999987776 99999999999999998763
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=140.12 Aligned_cols=107 Identities=13% Similarity=0.253 Sum_probs=90.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhc----CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~----~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
.++.+|||+|||+|..+..++ +. ..+++++|+|+.|++.|++++... ....+++++++|+.+++++ .+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~-~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~--~~ 123 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSAR-RNINQPNVKIIGIDNSQPMVERCRQHIAAY-----HSEIPVEILCNDIRHVEIK--NA 123 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHH-HhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECChhhCCCC--CC
Confidence 356699999999999999885 43 347999999999999999987532 1234689999999988754 59
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+|++++++||+++++...++++++++|+|||.+++.|.
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 999999999999888888999999999999999999874
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-16 Score=134.02 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=83.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|..+..|. +. +.++++||+|+.|++.|++++ .++.+.++|+.+ ++++++||+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~-~~~~~~~v~giDiS~~~l~~A~~~~-----------~~~~~~~~d~~~-~~~~~sfD~ 108 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALK-RLLPFKHIYGVEINEYAVEKAKAYL-----------PNINIIQGSLFD-PFKDNFFDL 108 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHH-HhCCCCeEEEEECCHHHHHHHHhhC-----------CCCcEEEeeccC-CCCCCCEEE
Confidence 456789999999999999885 54 568999999999999998864 246788888877 556679999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+++.+++|++.+++.++++++.+++ ++++++.|
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 99999999998777889999999997 56777665
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=139.06 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=85.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.|++++ .++.|+.+|+.++.+. ++||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la-~~~~~~~v~gvD~s~~~i~~a~~~~-----------~~~~~~~~d~~~~~~~-~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLV-ERWPAARITGIDSSPAMLAEARSRL-----------PDCQFVEADIASWQPP-QALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHhC-----------CCCeEEECchhccCCC-CCcc
Confidence 3466799999999999999885 54 358999999999999999875 3578999999877644 5999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++.++||++|.. .+|+++.++|+|||.+++.
T Consensus 96 ~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQWLPDHL--ELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChhhCCCHH--HHHHHHHHhcCCCcEEEEE
Confidence 999999999998766 9999999999999998764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.4e-16 Score=149.63 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=90.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++... ...+++|.++|+.+.++++++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~-------~~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG-------RKCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc-------CCCceEEEEcCcccCCCCCCCEEEE
Confidence 346679999999999999977544456899999999999999887532 2347899999998877666789999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|..+++|+++++ .+|++++++|+|||.+++.+
T Consensus 337 ~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 337 YSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EECCcccccCCHH--HHHHHHHHHcCCCeEEEEEE
Confidence 9999999998877 99999999999999998875
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-16 Score=135.81 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=78.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||||.++..+. +. ..+|+++|+|++|++.|+++. .++++|++++++++++||+|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~-~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~ 115 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFK-KVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVM 115 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHH-HhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEE
Confidence 36799999999999999874 55 469999999999999998641 356889999988888999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCc
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSG 263 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG 263 (272)
+++++||++|++ +++++++|+|+|.+
T Consensus 116 ~~~~l~~~~d~~--~~l~e~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHASDNIE--KVIAEFTRVSRKQV 141 (226)
T ss_pred ecChhhccCCHH--HHHHHHHHHhcCce
Confidence 999999998877 99999999999954
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-16 Score=141.91 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=87.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++++|||+|||+|+.+..+ ++.+.+|+++|.|+.|++.++++.... ..++++.+.|+....+ +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~l-a~~g~~V~avD~s~~ai~~~~~~~~~~-------~l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYL-ALLGFDVTAVDINQQSLENLQEIAEKE-------NLNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHc-------CCceEEEEechhcccc-cCCccEEEE
Confidence 3459999999999999987 577789999999999999999886431 2268888899887665 468999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.++||++.++...+++++.++|+|||++++.
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999998778889999999999999986654
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=136.98 Aligned_cols=214 Identities=17% Similarity=0.162 Sum_probs=138.5
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhccccc--chhhhhHHHHH----
Q 024100 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGE--QQEKKTQWYRE---- 108 (272)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~~~--~~~~~~~~y~~---- 108 (272)
.+.+-|+.+||.|++++.++|++.+.. .| ++.|.+-|.+.+| ..|...|-.+-.+.... ..++...||..
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~-~~-g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL-PP-GGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC-CC-CCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 678889999999999999999999966 33 7899999999999 34444444443332110 12333333321
Q ss_pred ---HHhhhhcchhhhhccccC-CCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC--c
Q 024100 109 ---GISYWEGVEASVDGVLGG-FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--E 182 (272)
Q Consensus 109 ---~~~YW~~~~~~~~~~lgg-y~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~--~ 182 (272)
...+|.......+.-|-. -+-+|...++...++|.+.+. .....+|||+|||.|.++..+ ++.++ +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~-------~~~~~~vlDlGCG~Gvlg~~l-a~~~p~~~ 184 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLP-------PDLGGKVLDLGCGYGVLGLVL-AKKSPQAK 184 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCC-------ccCCCcEEEeCCCccHHHHHH-HHhCCCCe
Confidence 123333222111100000 011445556555565555444 233459999999999999987 57776 8
Q ss_pred EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcCh--h-hHHHHHHHHHHhc
Q 024100 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD--D-DFVSFFKRAKENI 259 (272)
Q Consensus 183 v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d--~-~~~~~l~~~~r~L 259 (272)
++++|.|...++.|++++.. ....+..++..|..+-. . ++||+|+||--||-=-+ . --.+++....+.|
T Consensus 185 vtmvDvn~~Av~~ar~Nl~~------N~~~~~~v~~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L 256 (300)
T COG2813 185 LTLVDVNARAVESARKNLAA------NGVENTEVWASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHL 256 (300)
T ss_pred EEEEecCHHHHHHHHHhHHH------cCCCccEEEEecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhh
Confidence 99999999999999999853 12233356666664432 2 38999999988853211 1 1237999999999
Q ss_pred ccCcEEEEe
Q 024100 260 ARSGTFLLS 268 (272)
Q Consensus 260 kpgG~liv~ 268 (272)
++||.+.++
T Consensus 257 ~~gGeL~iV 265 (300)
T COG2813 257 KPGGELWIV 265 (300)
T ss_pred ccCCEEEEE
Confidence 999987654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-16 Score=127.52 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=78.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++.+.+++++|+|+.|++. . ++.....+.....+++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK--R--------------NVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH--T--------------TSEEEEEECHTHHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh--h--------------hhhhhhhhhhhhhccccchhhHh
Confidence 56779999999999999977 6888899999999999988 1 12233333333333457999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+.+|+|++|+. .+|+++.+.|+|||++++.+.
T Consensus 84 ~~~~l~~~~d~~--~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 84 CNDVLEHLPDPE--EFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp EESSGGGSSHHH--HHHHHHHHCEEEEEEEEEEEE
T ss_pred hHHHHhhcccHH--HHHHHHHHhcCCCCEEEEEEc
Confidence 999999999866 999999999999999988764
|
... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=137.65 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=84.5
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
++.++.+|||||||+|.++..++.+.+.+|++|..|++..+.+++++... +....+++.+.|..+++. +||.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~-----gl~~~v~v~~~D~~~~~~---~fD~ 130 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREA-----GLEDRVEVRLQDYRDLPG---KFDR 130 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCS-----TSSSTEEEEES-GGG------S-SE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEeeccccCC---CCCE
Confidence 47889999999999999999886555889999999999999999998653 234678999999887753 8999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|-.+++|+..+.+..+|+++.++|+|||.+++.
T Consensus 131 IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 131 IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999998888889999999999999999764
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-16 Score=138.43 Aligned_cols=107 Identities=21% Similarity=0.154 Sum_probs=89.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++.+|||+|||+|..+..++...++ +|+++|+|+.|++.|+++.... ...+++|..+|++++++++++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------g~~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------GYTNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc------CCCCEEEEEcchhhCCCCCCcee
Confidence 456789999999999988866433333 6999999999999999986432 23578999999998877667999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|+++.+++|+++.. ++|+++.++|+|||.+++.+
T Consensus 149 ~Vi~~~v~~~~~d~~--~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 149 VIISNCVINLSPDKE--RVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEEcCcccCCCCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999999999987766 89999999999999998865
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=148.35 Aligned_cols=105 Identities=21% Similarity=0.381 Sum_probs=90.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fDlI 234 (272)
+..+|||+|||+|.++..| ++.+.+|+++|+|+.|++.+++... ...++.++++|+.. +++++++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~l-a~~~~~v~giD~s~~~l~~a~~~~~--------~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGEL-AKKAGQVIALDFIESVIKKNESING--------HYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHH-HhhCCEEEEEeCCHHHHHHHHHHhc--------cCCceEEEEecccccccCCCCCCEEEE
Confidence 4568999999999999987 5778899999999999998866421 23578999999863 45556799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+++++++|++++++..++++++++|+|||++++.|+
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999999998888999999999999999998875
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=133.02 Aligned_cols=122 Identities=14% Similarity=0.229 Sum_probs=99.6
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCC
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~-------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~ 212 (272)
+..+.++...+. .....++||++||||.++..++.... .+|++.|+|++||+.++++...... ....
T Consensus 86 RlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l---~~~~ 159 (296)
T KOG1540|consen 86 RLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL---KASS 159 (296)
T ss_pred HHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC---CcCC
Confidence 334555544443 45668999999999999998874332 5799999999999999988633211 1234
Q ss_pred ceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 213 ~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+.|+++|++++|+++++||..++.+.|.+.++++ +.+++++|+|||||.|...|
T Consensus 160 ~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 160 RVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred ceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEE
Confidence 68999999999999999999999999999999999 99999999999999998766
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=131.46 Aligned_cols=103 Identities=25% Similarity=0.379 Sum_probs=84.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
....++||+|||+|.+|..| +.+..+++++|.|+..|+.|++++.. .++|+|.+.++.++.|+ ++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~L-A~rCd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P~-~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERL-APRCDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWPE-GRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHH-GGGEEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEE
T ss_pred cccceeEecCCCccHHHHHH-HHhhCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCCC-CCeeEEE
Confidence 34568999999999999987 78899999999999999999999853 46899999999888654 7999999
Q ss_pred echhhhhcCh-hhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTD-DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.+++|+++ +++..++.++.+.|+|||.+|+-
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999986 67889999999999999999864
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-17 Score=125.79 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=60.8
Q ss_pred eEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCC-CCcceeeEech
Q 024100 162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPE-TGRYDVIWVQW 238 (272)
Q Consensus 162 LDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~-~~~fDlIvs~~ 238 (272)
||||||+|.++..++... ..+++++|+|+.|++.|++++... ...+......+..+. ... .++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL------GNDNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC------T---EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc------CCcceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999986442 568899999999999998887543 122333333333222 111 25999999999
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
++||+.+.. .+++++++.|+|||.|
T Consensus 75 vl~~l~~~~--~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIE--AVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HH--HHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHH--HHHHHHHHHcCCCCCC
Confidence 999995555 9999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=130.53 Aligned_cols=104 Identities=19% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+++++||+|||.|+.+..| ++.+..|+++|.|+..++.+++.... ..-.++..+.|++++.++ +.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyL-A~~G~~VtAvD~s~~al~~l~~~a~~-------~~l~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYL-ASQGFDVTAVDISPVALEKLQRLAEE-------EGLDIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHH-HHTT-EEEEEESSHHHHHHHHHHHHH-------TT-TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHH-HHCCCeEEEEECCHHHHHHHHHHHhh-------cCceeEEEEecchhcccc-CCcCEEE
Confidence 35779999999999999977 78889999999999999998776532 223589999999998875 6899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..+++|+..+.+.++++.+.+.++|||++++.
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 999999999888889999999999999997763
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=131.25 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=86.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.+.+|||+|||+|.++..++ +.++ +++++|+|+.|++.+++.+. .++.++.+|+++.++++++||+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~-~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALL-KRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHH-HhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEE
Confidence 34689999999999999774 6554 56999999999999998752 37889999999887666799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++++++||+.+.. .++.++.++|+|||.+++.+
T Consensus 103 i~~~~l~~~~~~~--~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDDLS--QALSELARVLKPGGLLAFST 135 (240)
T ss_pred EEhhhhhhccCHH--HHHHHHHHHcCCCcEEEEEe
Confidence 9999999997766 99999999999999998764
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=140.94 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=84.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||||||+|.++..++ ..++ .|+++|+|+.|+..++..-... ....++.|..+|++++++ +++||+|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la-~~g~~~V~GiD~S~~~l~q~~a~~~~~-----~~~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRML-GAGAKLVVGIDPSQLFLCQFEAVRKLL-----GNDQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 46799999999999999885 5554 6999999999998654422110 113479999999999877 57999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|..+++|+.++. .+|+++++.|+|||.+++.
T Consensus 195 s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 195 SMGVLYHRRSPL--DHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ECChhhccCCHH--HHHHHHHHhcCCCcEEEEE
Confidence 999999998776 8999999999999998764
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=130.05 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=89.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..++ +.+ .+++++|+|+.+++.++++... ...++++...|++.++..+++|
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a-~~~~~~~~v~~~d~~~~~~~~a~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELA-RRVGPEGRVVGIDRSEAMLALAKERAAG-------LGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHH-HhcCCCcEEEEEeCCHHHHHHHHHHhhC-------CCCceEEEecccccCCCCCCCc
Confidence 4567899999999999999885 543 4899999999999999987321 3457899999998877666799
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++..+++|+.++. .+++++.++|+|||.+++.+
T Consensus 89 D~v~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 89 DAVRSDRVLQHLEDPA--RALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred eEEEEechhhccCCHH--HHHHHHHHHhcCCcEEEEEe
Confidence 9999999999998877 99999999999999998765
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-15 Score=128.94 Aligned_cols=109 Identities=10% Similarity=-0.029 Sum_probs=86.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC------CCCCCCceEEEEeCCCCCCCC-CC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-TG 229 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~------~~~~~~~v~~~~~d~~~~~~~-~~ 229 (272)
++.+|||+|||.|+.+..| ++++.+|++||+|+.+++.+.+........ ......+++++++|+.+++.. .+
T Consensus 34 ~~~rvLd~GCG~G~da~~L-A~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWL-AEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHH-HhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 5579999999999999977 688999999999999999864432110000 000134789999999888643 35
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+||.|+-..+++|++.+....+++.+.++|+|||.++
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 7999999999999998888899999999999999644
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=133.63 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=80.6
Q ss_pred CCCCeeeEeecccchHHHHHHHh---cC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~---~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 230 (272)
.++.+|||+|||+|.++..|+.. .+ .+++++|+|+.|++.|+++.. ..++.+.+.+...++..+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---------~~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---------RPGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---------cCCCeEEEEecccccccCCC
Confidence 35679999999999999877421 22 389999999999999988753 23567777776666555679
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
||+|+++.++||++++++..+|+++.++++ |.+++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEE
Confidence 999999999999999888899999999998 44443
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-15 Score=134.84 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=92.7
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
++.++++|||||||+|.++..++.++..+|+|++.|+++.+.+++++... +...++++...|..++. ++||-
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-----gl~~~v~v~l~d~rd~~---e~fDr 140 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-----GLEDNVEVRLQDYRDFE---EPFDR 140 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-----CCCcccEEEeccccccc---cccce
Confidence 47899999999999999999885444589999999999999999987543 23458999999998885 35999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|-..++|+.......+|+++++.|+|||.++..
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 99999999999877779999999999999988754
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=139.01 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=83.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..++......|+++|+|+.|+..++..-... ....++.+...+++++++. .+||+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~-----~~~~~v~~~~~~ie~lp~~-~~FD~V~ 193 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL-----DNDKRAILEPLGIEQLHEL-YAFDTVF 193 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh-----ccCCCeEEEECCHHHCCCC-CCcCEEE
Confidence 456799999999999999885333347999999999998754321110 1234678888999888754 4899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+.+++|+.++. .+|++++++|+|||.+++.
T Consensus 194 s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 194 SMGVLYHRKSPL--EHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EcchhhccCCHH--HHHHHHHHhcCCCCEEEEE
Confidence 999999998887 8999999999999999865
|
Known examples to date are restricted to the proteobacteria. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-15 Score=133.98 Aligned_cols=112 Identities=17% Similarity=0.277 Sum_probs=86.1
Q ss_pred CCCCeeeEeecccch----HHHHHHHhc-------CCcEEEEeCCHHHHHHHHHhccccCC---C---------------
Q 024100 156 NQHLVALDCGSGIGR----ITKNLLIRY-------FNEVDLLEPVSHFLDAARESLAPENH---M--------------- 206 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~----~t~~LLa~~-------~~~v~~vD~S~~mld~A~~~l~~~~~---~--------------- 206 (272)
.++.+|+|+|||||. ++..+ ++. ..+|+++|+|+.||+.|++..-.... .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l-~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLL-AETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHH-HHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 345799999999996 44433 333 23799999999999999985411000 0
Q ss_pred ---CCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 207 ---APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 207 ---~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
......+++|.+.|+.+.+++.++||+|+|.++|+|+++++..++++++++.|+|||++++.
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 00011368999999998776567999999999999999888889999999999999999864
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=138.59 Aligned_cols=102 Identities=21% Similarity=0.173 Sum_probs=87.7
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+..+|||+|||+|.++..++... ..+|+++|+|+.|++.|+++.. ..+++++.+|+++.++++++||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---------~~~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LKECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---------ccCCeEEeccHHhCCCCCCceeEEE
Confidence 46799999999999999775332 3589999999999999998752 2468899999998877777999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+++|+++++ .+|+++.++|+|||.+++.+
T Consensus 184 s~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 184 SAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEE
Confidence 999999998877 89999999999999987764
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-15 Score=129.25 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=85.4
Q ss_pred eeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+|||||||+|..+..++ +.+ .+|+++|+|+.+++.+++++... ....+++++..|+...+++ ++||+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la-~~~~~~~v~gid~s~~~~~~a~~~~~~~-----gl~~~i~~~~~d~~~~~~~-~~fD~I~~~ 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA-ERHPHLQLHGYTISPEQAEVGRERIRAL-----GLQGRIRIFYRDSAKDPFP-DTYDLVFGF 74 (224)
T ss_pred eEEEECCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcceEEEecccccCCCC-CCCCEeehH
Confidence 69999999999999885 544 48999999999999999987532 2345789999998665544 589999999
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+++|+.+.. .+|++++++|+|||.+++.+
T Consensus 75 ~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 75 EVIHHIKDKM--DLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHHhCCCHH--HHHHHHHHHcCCCCEEEEEE
Confidence 9999997765 99999999999999998875
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-14 Score=132.16 Aligned_cols=207 Identities=14% Similarity=0.175 Sum_probs=128.7
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhcccccchhhhhHHHHHHH----
Q 024100 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGI---- 110 (272)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~~~~~~~~~~~y~~~~---- 110 (272)
.+.+-|+.+|+.|+++.-++.+.++-. .++..++-|.+..|- -.+..+.-.+.+++.. .... ++++.
T Consensus 106 ~~d~vl~~~PK~~~~l~~~l~~l~~~l---~~~~~ii~g~~~k~i-~~~~~~~~~k~l~~~~----~~~~-~~kaR~~~~ 176 (378)
T PRK15001 106 QPGVVLIKVPKTLALLEQQLRALRKVV---TSDTRIIAGAKARDI-HTSTLELFEKVLGPTT----TTLA-WKKARLINC 176 (378)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhhC---CCCCEEEEEEecCCC-cHHHHHHHHHHhCccc----hhhh-hhhhhheec
Confidence 467889999999999999999887733 455556666666551 1111334444444310 1111 11111
Q ss_pred -hhhhcc---h-----------hh---hhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHH
Q 024100 111 -SYWEGV---E-----------AS---VDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRIT 172 (272)
Q Consensus 111 -~YW~~~---~-----------~~---~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t 172 (272)
-|+... + -+ ..|+ ++...++....++...+.. ....+|||+|||+|.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV------Fs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~ 243 (378)
T PRK15001 177 TFNEPPLADAPQTVSWKLEGTDWTIHNHANV------FSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIG 243 (378)
T ss_pred cCCCCCCcCCCceeEEEEcCceEEEEecCCc------cCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHH
Confidence 111100 0 00 1122 3334444444555444331 23459999999999999
Q ss_pred HHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhc---Chhh
Q 024100 173 KNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDD 247 (272)
Q Consensus 173 ~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl---~d~~ 247 (272)
..++ +.+ .+|+++|.|+.|++.|++++.... .....+++++..|..+.. ++++||+|+|+-.+|.. ++..
T Consensus 244 i~la-~~~P~~~V~~vD~S~~Av~~A~~N~~~n~---~~~~~~v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~i 318 (378)
T PRK15001 244 LTLL-DKNPQAKVVFVDESPMAVASSRLNVETNM---PEALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNV 318 (378)
T ss_pred HHHH-HhCCCCEEEEEECCHHHHHHHHHHHHHcC---cccCceEEEEEccccccC-CCCCEEEEEECcCcccCccCCHHH
Confidence 9874 654 489999999999999999874210 001236888888875432 23589999999777543 3444
Q ss_pred HHHHHHHHHHhcccCcEEEEe
Q 024100 248 FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 248 ~~~~l~~~~r~LkpgG~liv~ 268 (272)
..++|+.++++|+|||.++++
T Consensus 319 a~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 319 AWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred HHHHHHHHHHhcccCCEEEEE
Confidence 568999999999999988765
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-15 Score=129.91 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=87.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+....+|.|+|||+|+.|..| +++++ .++|+|.|+.||+.|++++ ++.+|..+|+.++.++ ...|
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL-~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~d 94 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELL-ARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTD 94 (257)
T ss_pred ccccceeeecCCCCCHHHHHH-HHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccc
Confidence 556789999999999999955 68765 7899999999999998876 5789999999999865 5899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++-+|+.++|-- .+|.++...|.|||.+-+.
T Consensus 95 llfaNAvlqWlpdH~--~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 95 LLFANAVLQWLPDHP--ELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhhhhhhccccH--HHHHHHHHhhCCCceEEEE
Confidence 999999999998766 8999999999999998764
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=143.65 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=88.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 231 (272)
.++.+|||+|||+|.++..+ ++.+ .+++++|+|+.|++.|+++... ...+++++++|..+++ +++++|
T Consensus 417 ~~g~rVLDIGCGTG~ls~~L-A~~~P~~kVtGIDIS~~MLe~Ararl~~-------~g~~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMI-EEETEDKRIYGIDISENVIDTLKKKKQN-------EGRSWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHhhh-------cCCCeEEEEcchHhCccccCCCCE
Confidence 35679999999999999877 4544 4999999999999999987632 2346788999988765 556799
Q ss_pred eeeEechhhhhcC-----------hhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 232 DVIWVQWCIGHLT-----------DDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 232 DlIvs~~vl~hl~-----------d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
|+|++++++||+. ..+..++|++++++|+|||.+++.|..
T Consensus 489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9999999998762 346779999999999999999998753
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-14 Score=120.65 Aligned_cols=101 Identities=20% Similarity=0.179 Sum_probs=81.9
Q ss_pred CCCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+++.+|||+|||+|..+..++.. ...+|+++|+|+.|++.|+++.... ...+++++++|+++++. .++||+|
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~------~l~~i~~~~~d~~~~~~-~~~fDlV 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL------GLKNVTVVHGRAEEFGQ-EEKFDVV 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc------CCCCEEEEeccHhhCCC-CCCccEE
Confidence 34679999999999999977422 2458999999999999999987542 23459999999998876 5699999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.. .+ +..+++++.+.|+|||.+++.+
T Consensus 117 ~~~~~----~~--~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 117 TSRAV----AS--LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEccc----cC--HHHHHHHHHHhcCCCeEEEEEe
Confidence 99752 23 3489999999999999998764
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=136.35 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=87.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|.++..++...+.+|+++|+|+.|++.|+++... ..+++...|..++ +++||+|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 457789999999999999978534466999999999999999998631 2478888888765 3689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+.+.....+|+++.++|+|||.+++..
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999988777799999999999999998754
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=124.46 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=89.1
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++... ....+++++.+|+.+.+.++++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-----GLSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-----ccccCeEEEecccccCCCCCCCccEE
Confidence 45799999999999999885433 279999999999999999987431 12357899999998877666799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++++++||+.+.. .+|+++.+.|+|||.+++.|
T Consensus 126 ~~~~~l~~~~~~~--~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 126 TIAFGLRNVPDID--KALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEecccccCCCHH--HHHHHHHHhccCCcEEEEEE
Confidence 9999999987766 99999999999999998765
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-14 Score=123.84 Aligned_cols=109 Identities=9% Similarity=-0.049 Sum_probs=86.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC------CCCCCCceEEEEeCCCCCCCCC-
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPET- 228 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~------~~~~~~~v~~~~~d~~~~~~~~- 228 (272)
.+..+|||+|||.|+.+..| ++.+.+|++||+|+.+++.+.+........ ......+++++++|+.++.+..
T Consensus 36 ~~~~rvL~~gCG~G~da~~L-A~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWL-AEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHH-HhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 35579999999999999977 688899999999999999875432111000 0012457899999999886443
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
+.||+|+-..+++|++......+++.+.++|+|||.+
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~ 151 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRG 151 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeE
Confidence 5899999999999999888889999999999999853
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-14 Score=121.97 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=88.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC---cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~---~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.++.+|||+|||+|.++..++ +.++ +++++|+++.+++.+++++. ...++++..+|+.+.++.+++||
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~-~~~~~~~~~~~iD~~~~~~~~~~~~~~--------~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELA-KSAPDRGKVTGVDFSSEMLEVAKKKSE--------LPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHH-HhcCCCceEEEEECCHHHHHHHHHHhc--------cCCCceEEecchhcCCCCCCcEE
Confidence 356799999999999999885 5444 89999999999999998863 23468999999988776667899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|+++++++|+.+.. .+++++.+.|+|||.+++.+
T Consensus 109 ~i~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQ--KALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEEEeeeeCCcccHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999999999987766 99999999999999998765
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.4e-14 Score=122.62 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=86.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++....|+++|+|+.|++.|++++... ....++.|.++|+.+.+ ++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~l-a~~~~~v~gvD~s~~~i~~a~~~~~~~-----~~~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIEL-AKRGAIVKAVDISEQMVQMARNRAQGR-----DVAGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEECChhhCC---CCcCEEE
Confidence 45679999999999999988 467779999999999999999987431 11247899999998764 5899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+..+++|++.+++..+++++.+.+++++.+..
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999887788999999999987776654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-14 Score=123.95 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=88.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE-EEEeCCCCCC-CCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fDl 233 (272)
.....||++|||||..-..+=-....+|+++||++.|-+.+.+.++.. ...++. |+.++.++++ .++++||+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~------k~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK------KPLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc------cCcceEEEEeechhcCcccccCCeee
Confidence 445578999999999877441124679999999999999999887543 345566 8999999987 56789999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++..+|.-..|+. +.|++++++|+|||.++.-|
T Consensus 149 VV~TlvLCSve~~~--k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPV--KQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEEEEeccCCHH--HHHHHHHHhcCCCcEEEEEe
Confidence 99999999988877 99999999999999998766
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-14 Score=119.97 Aligned_cols=98 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+.+|||+|||+|.++..+ +..+ .+|+++|+|+.|++.+++++... ...+++++++|++++.. .++||+|+
T Consensus 43 ~~~vLDiGcGtG~~s~~l-a~~~~~~~V~~iD~s~~~~~~a~~~~~~~------~~~~i~~i~~d~~~~~~-~~~fD~I~ 114 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPL-AIARPELKLTLLESNHKKVAFLREVKAEL------GLNNVEIVNGRAEDFQH-EEQFDVIT 114 (181)
T ss_pred CCeEEEecCCCCccHHHH-HHHCCCCeEEEEeCcHHHHHHHHHHHHHh------CCCCeEEEecchhhccc-cCCccEEE
Confidence 569999999999999977 4544 47999999999999999887532 23469999999998753 46999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.. +++ +..+++.+.+.|+|||.+++..
T Consensus 115 s~~-~~~-----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LAS-----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hhC-----HHHHHHHHHHhcCCCCEEEEEc
Confidence 876 433 3368889999999999988754
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=107.19 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=79.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD 232 (272)
.+..+|||+|||+|.++..++ +.+ .+|+++|+|+.+++.+++++... ...++.++..|+... +...++||
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAA-RLVPNGRVYAIERNPEALRLIERNARRF------GVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHH-HHCCCceEEEEcCCHHHHHHHHHHHHHh------CCCceEEEeccccccChhhcCCCC
Confidence 455699999999999999885 543 47999999999999999887432 234688888887653 22235899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++....++ ..++++++.+.|+|||.+++.
T Consensus 91 ~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 9999876533 348999999999999998763
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=120.52 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..+ ++...+++++|+++.+++.+++++... ...+++...++.+++ ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l-~~~~~~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESM-ARLGADVTGIDASEENIEVARLHALES-------GLKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHH-HHcCCeEEEEcCCHHHHHHHHHHHHHc-------CCceEEEecCHHHhhhhcCCCccEE
Confidence 35678999999999999977 467789999999999999999876421 235788888887764 233689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.+++|+++.. .+|+++.+.|+|||.+++..
T Consensus 119 i~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 119 TCMEMLEHVPDPA--SFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EEhhHhhccCCHH--HHHHHHHHHcCCCcEEEEEe
Confidence 9999999998776 89999999999999988753
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=127.32 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=81.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|+++....... .....++.|.+.|++++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~l-a~~g~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPL-ALEGAIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcchhhc---CCCcCEEEE
Confidence 4579999999999999988 477789999999999999999986431000 00124678999998665 368999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..+++|+++++...+++.+.+ +.+||.+|.
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 999999988777778888875 456666553
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=126.97 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=88.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.+..+|||||||+|.++..++ +.++ +++++|. +.+++.+++++... ....+++++.+|+.+.+++ .+|
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----gl~~rv~~~~~d~~~~~~~--~~D 217 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAML-KHFPELDSTILNL-PGAIDLVNENAAEK-----GVADRMRGIAVDIYKESYP--EAD 217 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHH-HHCCCCEEEEEec-HHHHHHHHHHHHhC-----CccceEEEEecCccCCCCC--CCC
Confidence 4566799999999999999885 6655 6888996 78999999887543 2345799999999765543 479
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|++++++|+.++++...+|+++++.|+|||.+++.|.
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999998887778999999999999999998875
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=114.97 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCc--EEEEeCCHHHHHHHHHhccccCCCCCCCCC
Q 024100 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (272)
Q Consensus 135 ~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~--v~~vD~S~~mld~A~~~l~~~~~~~~~~~~ 212 (272)
++....+|.+.+... +..+|||+|||+|.++..+ ++.++. |+++|.|+.+++.+++++... ...
T Consensus 16 ~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~l-a~~~~~~~v~~vDi~~~a~~~a~~n~~~n------~~~ 81 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLAL-AKRGPDAKVTAVDINPDALELAKRNAERN------GLE 81 (170)
T ss_dssp HHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHH-HHTSTCEEEEEEESBHHHHHHHHHHHHHT------TCT
T ss_pred CCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHH-HHhCCCCEEEEEcCCHHHHHHHHHHHHhc------Ccc
Confidence 444444555555422 4568999999999999977 577776 999999999999999988542 222
Q ss_pred ceEEEEeCCCCCCCCCCcceeeEechhhhhcCh---hhHHHHHHHHHHhcccCcEEEE
Q 024100 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 213 ~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d---~~~~~~l~~~~r~LkpgG~liv 267 (272)
++++++.|+.+... +++||+|+++-.++.-.+ .-..++++++.+.|+|||.+++
T Consensus 82 ~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 82 NVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 38999999876543 479999999987654433 2356899999999999998743
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-14 Score=122.45 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=81.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-CCCC--CCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~f 231 (272)
+..+|||+|||+|.++..++ +.+ .+|++||+|+.|++.|++++... ...++.++++|+ +.++ +++++|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la-~~~p~~~v~gVD~s~~~i~~a~~~~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMA-KANPDINFIGIEVHEPGVGKALKKIEEE------GLTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHH-HHCCCccEEEEEechHHHHHHHHHHHHc------CCCCEEEEecCHHHHHHHHcCcccc
Confidence 45689999999999999874 554 47999999999999999887432 235799999999 6654 455789
Q ss_pred eeeEechhhhhcC------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLT------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++++...+.. ......+++++.+.|+|||.+++.
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 9999987542221 112357999999999999998775
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-13 Score=115.43 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=83.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|.|+.|++.+++++.. ...+++++++|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRL-KGKGKCILTTDINPFAVKELRENAKL-------NNVGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHH-------cCCceEEEEccccccc--CCcccEEEE
Confidence 4568999999999999977 56677999999999999999998743 1236888999987654 348999999
Q ss_pred chhhhhcChh-------------------hHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDD-------------------DFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~-------------------~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+++.++. .+..+++++.++|+|||.+++.+
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 9888777542 14578999999999999987764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=119.45 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=81.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+..+|||+|||+|.++..+ ++.+..|+++|+|+.|++.|++++... ....+++|..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l-~~~~~~v~~~D~s~~~i~~a~~~~~~~-----~~~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPL-ARRGAKVVASDISPQMVEEARERAPEA-----GLAGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHhc-----CCccCcEEEEcCchh---ccCCcCEEE
Confidence 35679999999999999988 467778999999999999999987432 112478999988543 346899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
+..+++|+++++...+++++.+.+++++.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999888889999999877554444
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=123.97 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=75.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-----CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-----~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
...+|||+|||+|.++..++ +.. ..++++|+|+.|++.|+++. +++.|..+|+.++++++++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALA-DALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHH-HhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCce
Confidence 44689999999999999884 443 26899999999999998764 36789999999988877899
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++.++ + ..++++.++|+|||.+++..
T Consensus 153 D~I~~~~~------~---~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 153 DAIIRIYA------P---CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred eEEEEecC------C---CCHHHHHhhccCCCEEEEEe
Confidence 99998654 2 24678999999999998763
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=118.81 Aligned_cols=104 Identities=18% Similarity=0.333 Sum_probs=87.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-CCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fDlIv 235 (272)
.+.+|||+|||+|.++..+ ++....++++|+|+.+++.+++++... ...++++.+.|+.+++.. +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l-~~~~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPL-ARLGANVTGIDASEENIEVAKLHAKKD------PLLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhhcCCCCCccEEE
Confidence 4679999999999999977 466778999999999999999887431 122588999998877543 36899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+++|+.++. .+|+++.+.|+|||.+++..
T Consensus 118 ~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEHVPDPQ--AFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHhCCCHH--HHHHHHHHhcCCCcEEEEEe
Confidence 999999998877 99999999999999988754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-13 Score=115.63 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=78.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|..+..+ ++. ..+|+++|.++.|++.|++++... ....+++++.+|+.+..+..++|
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~l-a~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-----~~~~~v~~~~~d~~~~~~~~~~f 143 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVC-AEAIERRGKVYTVEIVKELAIYAAQNIERL-----GYWGVVEVYHGDGKRGLEKHAPF 143 (205)
T ss_pred CCCCCEEEEECcCccHHHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCcEEEEECCcccCCccCCCc
Confidence 346679999999999999866 454 358999999999999999987532 12246899999997754445699
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++..+++|++ .++.+.|+|||.+++
T Consensus 144 D~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi 171 (205)
T PRK13944 144 DAIIVTAAASTIP--------SALVRQLKDGGVLVI 171 (205)
T ss_pred cEEEEccCcchhh--------HHHHHhcCcCcEEEE
Confidence 9999999987764 356789999999875
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-13 Score=121.14 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=83.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCC---
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG--- 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~--- 229 (272)
.++.+|||+|||+|+.+..|+... ..+++++|+|++||+.|++++... .....+.++++|+.+. +....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-----~p~~~v~~i~gD~~~~~~~~~~~~~ 136 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-----YPQLEVHGICADFTQPLALPPEPAA 136 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-----CCCceEEEEEEcccchhhhhccccc
Confidence 355789999999999999886443 468999999999999999987421 1123567789998763 32221
Q ss_pred -cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 -RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 -~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...++++..+++|++.++...+|++++++|+|||.+++.
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 234566667899999888889999999999999988754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-13 Score=120.89 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=86.3
Q ss_pred CCCeeeEeecccchHHHHHHH-hcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLI-RYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa-~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.+.+|+|||||.|.+|.-+++ ..++ .++++|.++.+++.|++.+... .+...+++|..+|+.+.....+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~----~gL~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD----PDLSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc----cCccCCcEEEECchhhcccccCCcCE
Confidence 567999999998866554444 4555 5999999999999999987421 12346799999999876433468999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++. +++|+..++..++|+++.+.|+|||.+++.
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999 999997666779999999999999999864
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=111.34 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=79.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+..+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|++++... ...+++++++|... .. +++||
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~n~~~~------~~~~i~~~~~d~~~-~~-~~~~D 99 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAA-LQFPSLQVTAIERNPDALRLIKENRQRF------GCGNIDIIPGEAPI-EL-PGKAD 99 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCeEEEecCchh-hc-CcCCC
Confidence 3466799999999999999885 554 48999999999999999887432 22468899888743 22 35899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++....++ +..+++.+.+.|+|||.+++..
T Consensus 100 ~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 100 AIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEE
Confidence 9999876544 3478999999999999987653
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-13 Score=114.38 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=73.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CC-CCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++......++++|+|+.|++.++++ +++++++|+.+ ++ +++++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 4569999999999999977434456789999999999998642 35788888865 32 445789999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARS 262 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~Lkpg 262 (272)
+++.++||+++++ .+++++.+.++++
T Consensus 80 i~~~~l~~~~d~~--~~l~e~~r~~~~~ 105 (194)
T TIGR02081 80 ILSQTLQATRNPE--EILDEMLRVGRHA 105 (194)
T ss_pred EEhhHhHcCcCHH--HHHHHHHHhCCeE
Confidence 9999999998877 8999998887653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-13 Score=115.31 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=78.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCc---EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~---v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..+ ++.+.. |+++|.++.|++.|++++... ...+++++++|..+..+..++|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~l-a~~~~~~g~V~~vD~~~~~~~~A~~~~~~~------g~~~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVL-AEIVGRDGLVVSIERIPELAEKAERRLRKL------GLDNVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHH-HHHhCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCeEEEECCcccCCcccCCC
Confidence 456789999999999999966 566544 999999999999999988543 2357999999987754444689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++.....+++ ..+.+.|+|||.+++.
T Consensus 148 D~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 148 DRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred CEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 9999987765543 4467889999998753
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=114.44 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||||||+|.++..+ ++.. .+|+++|+++.|++.|++++... ...+++++++|.....++.++|
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~l-a~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------g~~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVV-AEIVGKSGKVVTIERIPELAEKAKKTLKKL------GYDNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred CCCcCEEEEECCcccHHHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccCCCcCCCc
Confidence 457789999999999999866 5543 48999999999999999998542 2357999999987655555789
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++..++++++ ..+.+.|+|||.+++.
T Consensus 147 D~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 147 DRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 9999988765542 3466789999998764
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-13 Score=114.61 Aligned_cols=105 Identities=13% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~f 231 (272)
...++||||||+|.++..++ +.++ +++++|+|+.|++.|++++... ...+++++++|+.++. ++++++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la-~~~p~~~v~gvD~~~~~l~~a~~~~~~~------~l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMA-KQNPDKNFLGIEIHTPIVLAANNKANKL------GLKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHH-HhCCCCCEEEEEeeHHHHHHHHHHHHHh------CCCCEEEEccCHHHHHHhhCCCCce
Confidence 34589999999999999885 5544 8999999999999999887432 2358999999997643 334589
Q ss_pred eeeEechhhhhcChh------hHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDD------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|++++...+.... ....+++++.++|+|||.|++.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 999988764332111 0137999999999999998754
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.9e-12 Score=93.63 Aligned_cols=102 Identities=22% Similarity=0.300 Sum_probs=81.9
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceeeEech
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlIvs~~ 238 (272)
+++|+|||+|.++..++.....++.++|.++.+++.+++.... ....+++++..|+.+... ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------LLADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc------ccccceEEEEcChhhhccccCCceEEEEEcc
Confidence 4899999999999988543567999999999999999843211 134578999999988753 346899999999
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++++ ......+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99874 344559999999999999999864
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-12 Score=110.83 Aligned_cols=111 Identities=13% Similarity=-0.010 Sum_probs=88.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcccc------CCCCCCCCCceEEEEeCCCCCCCC--
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKATNFFCVPLQDFTPE-- 227 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~------~~~~~~~~~~v~~~~~d~~~~~~~-- 227 (272)
.++.+||+.|||.|.-...| +..+.+|+++|.|+..++.+.+..... +.........++++++|+.++++.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~L-A~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFF-LSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHH-HhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 35679999999999999977 688889999999999999986642110 000011245799999999998642
Q ss_pred -CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 228 -TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 228 -~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.+.||+|+-..+|++++.+...+..+.+.++|+|||.++.
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1589999999999999988888999999999999998754
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.3e-12 Score=109.15 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=78.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ ++...+|+++|.++.|++.|++++... ...++++.++|..+..+..++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~l-a~~~~~v~~vd~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVL-AHLVRRVFSVERIKTLQWEAKRRLKQL------GLHNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHH-HHHhCEEEEEeCCHHHHHHHHHHHHHC------CCCceEEEECCcccCCCcCCCcCEE
Confidence 456789999999999999855 676679999999999999999988543 2346899999976543334689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++..+++++ .+.+.+.|+|||.+++.
T Consensus 149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 149 LVTAAAPEI--------PRALLEQLKEGGILVAP 174 (212)
T ss_pred EEccCchhh--------hHHHHHhcCCCcEEEEE
Confidence 998877654 34567899999998754
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-12 Score=107.28 Aligned_cols=81 Identities=11% Similarity=0.059 Sum_probs=68.0
Q ss_pred EEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCc
Q 024100 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSG 263 (272)
Q Consensus 184 ~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG 263 (272)
+|+|+|+.|++.|+++..... .....+++|+++|++++++++++||+|++.+++||+.|.. .+|++++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~---~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA---RSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc---ccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCcCe
Confidence 489999999999987753210 0123479999999999988878999999999999997766 99999999999999
Q ss_pred EEEEec
Q 024100 264 TFLLSH 269 (272)
Q Consensus 264 ~liv~E 269 (272)
.+++.|
T Consensus 76 ~l~i~d 81 (160)
T PLN02232 76 RVSILD 81 (160)
T ss_pred EEEEEE
Confidence 998775
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-12 Score=114.38 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=76.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|++++... .....+.+...+.... .+++||+|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa-~~g~~~V~avDid~~al~~a~~n~~~n-----~~~~~~~~~~~~~~~~--~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAAL-KLGAAKVVGIDIDPLAVESARKNAELN-----QVSDRLQVKLIYLEQP--IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHc-----CCCcceEEEecccccc--cCCCceEEE
Confidence 45799999999999998774 554 48999999999999999987532 1223456666654332 346899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++...++ +..++.++.+.|+|||.++++.
T Consensus 231 an~~~~~-----l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 231 ANILAEV-----IKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred EecCHHH-----HHHHHHHHHHHcCCCcEEEEEe
Confidence 9876533 4589999999999999998864
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-12 Score=100.31 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=80.9
Q ss_pred CeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcceeeE
Q 024100 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fDlIv 235 (272)
.+|||+|||+|.++..++ +.+ .+++++|+++..++.|+.++... ....+++++++|+.++. ..+++||+|+
T Consensus 2 ~~vlD~~~G~G~~~~~~~-~~~~~~~~gvdi~~~~~~~a~~~~~~~-----~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAAL-RRGAARVTGVDIDPEAVELARRNLPRN-----GLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp EEEEEETSTTCHHHHHHH-HHCTCEEEEEESSHHHHHHHHHHCHHC-----TTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CEEEEcCcchHHHHHHHH-HHCCCeEEEEEECHHHHHHHHHHHHHc-----cCCceEEEEECchhhchhhccCceeEEEE
Confidence 489999999999999885 666 89999999999999999998653 12357999999998764 4557999999
Q ss_pred echhhhhcC------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLT------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++-.+.... ......+++++.+.|+|||.+++.
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 986654321 123458999999999999988753
|
... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-12 Score=114.82 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=78.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHH--hccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE--SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~--~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.+.+|||||||.|+++..++.+.-..|.|||+++...-..+. ++- +....+.+....+++++. .+.||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l-------g~~~~~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL-------GQDPPVFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh-------CCCccEEEcCcchhhccc-cCCcCEE
Confidence 567999999999999999964444479999999987766432 221 012234444467788876 5799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|..||.|..+|- ..|++++..|+|||.+|+
T Consensus 187 F~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 187 FSMGVLYHRRSPL--DHLKQLKDSLRPGGELVL 217 (315)
T ss_pred EEeeehhccCCHH--HHHHHHHHhhCCCCEEEE
Confidence 9999999999888 999999999999998864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=109.30 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=75.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC----CCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~----~~~~ 228 (272)
+.++.+|||+|||+|.++..+ ++.. ..|+++|.|+.|++.+.++... ..++.++.+|+.+. ++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~l-a~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~- 139 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHV-SDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV- 139 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHH-HHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-
Confidence 567789999999999999977 5654 4899999999999988776531 25788999998652 222
Q ss_pred CcceeeEechhhhhcChhh-HHHHHHHHHHhcccCcEEEE
Q 024100 229 GRYDVIWVQWCIGHLTDDD-FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~liv 267 (272)
++||+|++. +++++ ...+++++.+.|||||.+++
T Consensus 140 ~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 140 EKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 479999854 33332 23578999999999999988
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=108.89 Aligned_cols=105 Identities=14% Similarity=0.024 Sum_probs=78.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+|||+|||+|.++..+ ++.+ .+++++|.|+.|++.+++++... ..++.++++|+.+.. .+++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~l-a~~~~~~v~~vD~s~~~l~~a~~n~~~~-------~~~~~~~~~d~~~~~-~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAA-AAAGAGSVTAVDISRRAVRSARLNALLA-------GVDVDVRRGDWARAV-EFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHH-HHcCCCeEEEEECCHHHHHHHHHHHHHh-------CCeeEEEECchhhhc-cCCCeeE
Confidence 345679999999999999977 4554 48999999999999999887431 225788899987643 3468999
Q ss_pred eEechhhhhcCh-------------------hhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTD-------------------DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d-------------------~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+++-.+.+-+. ..+..+++++.+.|+|||.+++.
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999743221111 11457889999999999998864
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=108.59 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=73.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--------
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-------- 225 (272)
.++.+|||+|||||.++..++.... ..|++||+++ | . ...++.++++|+.+.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~---------~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------D---------PIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------c---------CCCCcEEEecCCCChHHHHHHHHH
Confidence 4667999999999999998854433 4899999988 2 1 1235899999998853
Q ss_pred CCCCcceeeEechhhhhcChhh---------HHHHHHHHHHhcccCcEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~---------~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+++||+|+|+.+.++..++. ...+|+++.++|+|||.+++.
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3456899999988765543321 246899999999999999874
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=106.41 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=80.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 231 (272)
+.++.+|||+|||+|.++..++... ..+|+++|.++.|++.+++++... ....++.++++|+.++.+ ..++|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-----g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-----GVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCCeEEEEechhhhHhhcCCCC
Confidence 5677899999999999999874332 358999999999999999887532 113578899999876432 23589
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++... ..++..+++.+.+.|+|||.+++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998642 23455899999999999999876
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=106.00 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=77.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fDl 233 (272)
.++++|||+|||.|.+...|.......+.|||++++.+..+.++ .++++++|+++- .+++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCccE
Confidence 46789999999999999988655677889999999998888764 467899998753 367789999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+++.+|.++.+++ .+|++|.|+ |...|+
T Consensus 79 VIlsqtLQ~~~~P~--~vL~EmlRV---gr~~IV 107 (193)
T PF07021_consen 79 VILSQTLQAVRRPD--EVLEEMLRV---GRRAIV 107 (193)
T ss_pred EehHhHHHhHhHHH--HHHHHHHHh---cCeEEE
Confidence 99999999999988 899999766 444444
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=111.35 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=82.4
Q ss_pred CCCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDl 233 (272)
+.+.+||+||||+|.++..++.. ...+|++||+++.+++.|++.+...... ....++++++.+|...+.. ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccE
Confidence 35679999999999999998643 2458999999999999999987532100 0125689999999876532 3468999
Q ss_pred eEechhhhhcChhhH--HHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDF--VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~--~~~l~~~~r~LkpgG~liv~ 268 (272)
|++...-.+.+...+ .+|++.|++.|+|||.++..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998654322222221 47999999999999998764
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=109.02 Aligned_cols=100 Identities=17% Similarity=0.287 Sum_probs=81.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.....+|+|||+|+|.++..++ +.++ ++++.|. |..++.+++ ..+++++.+|+. -+++ . +|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~v~~~~~~------------~~rv~~~~gd~f-~~~P-~-~D 160 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALA-RAYPNLRATVFDL-PEVIEQAKE------------ADRVEFVPGDFF-DPLP-V-AD 160 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHH-HHSTTSEEEEEE--HHHHCCHHH------------TTTEEEEES-TT-TCCS-S-ES
T ss_pred ccCccEEEeccCcchHHHHHHH-HHCCCCcceeecc-Hhhhhcccc------------ccccccccccHH-hhhc-c-cc
Confidence 4566789999999999999985 6666 5666776 778888877 248999999997 3333 3 99
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccC--cEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARS--GTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg--G~liv~E~~ 271 (272)
+|++.++||+++|++...+|+++++.|+|| |.|++.|.+
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 999999999999999999999999999999 999999865
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=108.53 Aligned_cols=97 Identities=18% Similarity=0.281 Sum_probs=73.1
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechh
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~v 239 (272)
.++|+|||+|..++-+ +.++.+|+++|+|+.||+.|++....- ......++...++.++.-.+++.|+|++..+
T Consensus 36 ~a~DvG~G~Gqa~~~i-ae~~k~VIatD~s~~mL~~a~k~~~~~-----y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGI-AEHYKEVIATDVSEAMLKVAKKHPPVT-----YCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred eEEEeccCCCcchHHH-HHhhhhheeecCCHHHHHHhhcCCCcc-----cccCCccccccccccccCCCcceeeehhhhh
Confidence 8999999999777744 799999999999999999998765321 1112233444444444333689999999999
Q ss_pred hhhcChhhHHHHHHHHHHhcccCc-EE
Q 024100 240 IGHLTDDDFVSFFKRAKENIARSG-TF 265 (272)
Q Consensus 240 l~hl~d~~~~~~l~~~~r~LkpgG-~l 265 (272)
+|.+. +++|+++++++|++.| .+
T Consensus 110 ~HWFd---le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 110 VHWFD---LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred HHhhc---hHHHHHHHHHHcCCCCCEE
Confidence 98863 4479999999999877 44
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=106.18 Aligned_cols=104 Identities=21% Similarity=0.202 Sum_probs=78.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.+.+|||+|||+|.++..++ +. ..+++++|+|+.+++.|++++... ...++.++++|+.+. .+.++||+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~-~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~-~~~~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALA-KERPDARVTAVDISPEALAVARKNAARL------GLDNVTFLQSDWFEP-LPGGKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhcc-CcCCceeEE
Confidence 34589999999999999885 54 348999999999999999887432 234689999998763 234689999
Q ss_pred Eechhh------hhcChh------------------hHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCI------GHLTDD------------------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl------~hl~d~------------------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++-.+ +++... ....+++++.+.|+|||.+++.
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 985332 222111 1247899999999999998764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-11 Score=107.62 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=70.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..+ ++.+. .|+++|+|+.|++.|++++... .....+.+..+ +.+||+|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~-~~~g~~~v~giDis~~~l~~A~~n~~~~-----~~~~~~~~~~~--------~~~fD~V 183 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAA-AKLGAKKVLAVDIDPQAVEAARENAELN-----GVELNVYLPQG--------DLKADVI 183 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHH-HHcCCCeEEEEECCHHHHHHHHHHHHHc-----CCCceEEEccC--------CCCcCEE
Confidence 35679999999999999966 56655 4999999999999999987431 11112222221 1279999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++...+ .+..++.++.+.|+|||.++++.
T Consensus 184 vani~~~-----~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 184 VANILAN-----PLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred EEcCcHH-----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 9875532 24578999999999999999864
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-11 Score=111.50 Aligned_cols=106 Identities=12% Similarity=-0.069 Sum_probs=83.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ +..+..++++|+++.|++.|+.++... ...++.+.++|+.+++..+++||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~liea-a~~~~~v~g~Di~~~~~~~a~~nl~~~------g~~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEA-GLMGAKVIGCDIDWKMVAGARINLEHY------GIEDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHH-HHhCCeEEEEcCCHHHHHHHHHHHHHh------CCCCCeEEecchhcCCcccCCCCEE
Confidence 456679999999999999876 567889999999999999999988543 2234789999999887666799999
Q ss_pred Eechhhhh-------cChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGH-------LTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~h-------l~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++-.+.. ....-...+++++.+.|+|||.+++
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 99643211 1112246899999999999998764
|
This family is found exclusively in the Archaea. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-11 Score=101.04 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=78.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+..+|||+|||+|.++..++ +...+|+++|.++.|++.+++++.. ..+++++.+|+.++++++..||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~-~~~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELL-ERAARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHH-hcCCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence 3456699999999999999885 5578999999999999999988732 357899999999987765579999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++-.+ |++.+.+..+++.. .+.++|.+++.
T Consensus 82 i~n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLPY-NISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EECCCc-ccHHHHHHHHHhcC--CCcceEEEEEE
Confidence 998765 55544444554432 24477777654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.7e-11 Score=101.58 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=75.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.+++++... ...+++++++|+.+ ++.....+
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la-~~~~~~~V~~vD~s~~~~~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAG-LLCPKGRVIAIERDEEVVNLIRRNCDRF------GVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCeEEEECchHHHHhhCCCCC
Confidence 3567799999999999999874 43 358999999999999999987532 23468999998854 22112246
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|.|++.. ...+..+++++.+.|+|||.+++..
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 7765532 1234589999999999999987653
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-11 Score=108.25 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=77.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++ +.+ .+|+++|.|+.+++.|++++... ....+++|+++|+.+.. ++++||+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la-~~~~~~~v~avDis~~al~~A~~n~~~~-----~~~~~i~~~~~D~~~~~-~~~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACA-YAFPEAEVDAVDISPDALAVAEINIERH-----GLEDRVTLIQSDLFAAL-PGRKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEECchhhcc-CCCCccEE
Confidence 34689999999999999884 554 48999999999999999987532 12247899999985532 23589999
Q ss_pred Eech------hhhhcC-----h------------hhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQW------CIGHLT-----D------------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~------vl~hl~-----d------------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++- .+.++. + .....+++++.+.|+|||.+++
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9862 111111 1 1235789999999999999875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=110.44 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=79.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
....+||||||+|.++..++ +.. ..++|+|+++.|++.|.+++... ...|+.++++|+..+ .++++++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA-~~~P~~~~iGIEI~~~~i~~a~~ka~~~------gL~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQA-KNNPNKLFIGIEIHTPSIEQVLKQIELL------NLKNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHH-HhCCCCCEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHhhhhCCCCcee
Confidence 34589999999999999884 554 48999999999999999887432 346899999998654 24567999
Q ss_pred eeEechhhhhcChh----hHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDD----DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~----~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.|++++..-+.... ....+++++.++|+|||.+.+.
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 99986543221111 0137999999999999988653
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=98.94 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=78.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..++ ....+++++|.|+.|++.+++++..... ....+.++.+|+.+... +++||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~d~~~~~~-~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAA-KNGKKVVGVDINPYAVECAKCNAKLNNI----RNNGVEVIRSDLFEPFR-GDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHH-hhcceEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEecccccccc-ccCceEEEE
Confidence 55689999999999999885 5588999999999999999988743210 11127888888766433 348999998
Q ss_pred chhhhhcC-------------------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLT-------------------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~-------------------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..+.+-+ ...+..+++++.+.|+|||.+++.
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 75432211 112457899999999999987654
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.2e-11 Score=109.73 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=77.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCC----CCCceEEEEeCCCC------CCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPD----MHKATNFFCVPLQD------FTP 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~----~~~~v~~~~~d~~~------~~~ 226 (272)
++.+|||+|||-|.-...........+.|+|+|...|+.|+++....+..... ..-...|+.+|... +.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999888777775556789999999999999999988322111000 11245677887642 222
Q ss_pred CCCcceeeEechhhhhc--ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl--~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....||+|-|+++|||. +......+|+++...|+|||+||.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22599999999999998 3344567999999999999999753
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-12 Score=112.51 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=81.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fDl 233 (272)
.+..++||+|||||-.+..| .....+.++||+|++|+++|.++=- --+.++.++..|. ..+.+||+
T Consensus 124 g~F~~~lDLGCGTGL~G~~l-R~~a~~ltGvDiS~nMl~kA~eKg~-----------YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEAL-RDMADRLTGVDISENMLAKAHEKGL-----------YDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred CccceeeecccCcCcccHhH-HHHHhhccCCchhHHHHHHHHhccc-----------hHHHHHHHHHHHhhhccCCcccc
Confidence 34779999999999999988 6788899999999999999998621 1133445554443 24469999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEE-EecCC
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL-LSHSL 271 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li-v~E~~ 271 (272)
|++..||.|+.+-+ .+|.-...+|+|||.+. .+|++
T Consensus 192 i~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 192 IVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEeccc
Confidence 99999999998766 99999999999999774 55543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=105.51 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=77.0
Q ss_pred CeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
.+|||+|||+|.++..++ ..+ .+|+++|+|+.+++.|++++... ....+++|+++|+.+.. +.++||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la-~~~~~~~v~avDis~~al~~a~~n~~~~-----~~~~~v~~~~~d~~~~~-~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALA-YEFPNAEVIAVDISPDALAVAEENAEKN-----QLEHRVEFIQSNLFEPL-AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEECchhccC-cCCCccEEEE
Confidence 589999999999999884 554 48999999999999999987532 12235899999986642 2248999998
Q ss_pred ch-------------hhhhcCh----------hhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QW-------------CIGHLTD----------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~-------------vl~hl~d----------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+- ++.|-+. .....+++++.+.|+|||.+++
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 61 2333221 1355789999999999999875
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.7e-11 Score=99.76 Aligned_cols=104 Identities=14% Similarity=0.281 Sum_probs=79.0
Q ss_pred eeeEeecccchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 160 VALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
+|||+|||.|.+...|+...|+. .++||.|+..++.|+...++- .....|+|.+.|+.+-++..+.||+|.--.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~-----~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD-----GFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc-----CCCcceeEEEeeccCCcccccceeEEeecC
Confidence 99999999999999997666776 999999999999997765432 223349999999987666667899988433
Q ss_pred hhhhc------ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 239 CIGHL------TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 239 vl~hl------~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.-+ .+..+...+..+.+.|+|||++++.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 22111 1222346788899999999998875
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-11 Score=105.66 Aligned_cols=143 Identities=18% Similarity=0.298 Sum_probs=102.4
Q ss_pred HHHHhhhhcchhhhhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC----c
Q 024100 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN----E 182 (272)
Q Consensus 107 ~~~~~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~----~ 182 (272)
..+..|||...... ...+.-.+.+|.+-++.+++... ....+||++|||.|+...+++ +..+ .
T Consensus 33 ~~~~k~wD~fy~~~-----------~~rFfkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll-~~~~n~~l~ 99 (264)
T KOG2361|consen 33 REASKYWDTFYKIH-----------ENRFFKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLL-KTSPNNRLK 99 (264)
T ss_pred cchhhhhhhhhhhc-----------cccccchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhh-hcCCCCCeE
Confidence 45688997644332 23333346667666666654322 222389999999999999997 4433 5
Q ss_pred EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC----CCCCCCcceeeEechhhhhcChhhHHHHHHHHHHh
Q 024100 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKEN 258 (272)
Q Consensus 183 v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~ 258 (272)
+.+.|.|+..++..+++.... ..++.-.+.|+.. -+++.+++|.|++-++|--+..+....++++++++
T Consensus 100 v~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~l 172 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTL 172 (264)
T ss_pred EEEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHH
Confidence 788899999999998875431 2344445555532 23455799999999999888877788999999999
Q ss_pred cccCcEEEEec
Q 024100 259 IARSGTFLLSH 269 (272)
Q Consensus 259 LkpgG~liv~E 269 (272)
|||||.++..|
T Consensus 173 lKPGG~llfrD 183 (264)
T KOG2361|consen 173 LKPGGSLLFRD 183 (264)
T ss_pred hCCCcEEEEee
Confidence 99999998765
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.8e-11 Score=109.90 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=76.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC---cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~---~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..+ ++... .|+++|.++.|++.|++++... ...++.++++|..+..+..++|
T Consensus 78 i~~g~~VLDIG~GtG~~a~~L-A~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------g~~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVM-SRVVGEKGLVVSVEYSRKICEIAKRNVRRL------GIENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHH-HHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCChhhcccccCCc
Confidence 456679999999999999977 45543 5999999999999999987532 2357899999987655444689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++...+.+++ ..+.+.|+|||.+++.
T Consensus 151 D~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 151 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred cEEEECCchHHhH--------HHHHHhcCCCCEEEEE
Confidence 9999987765542 2356789999998764
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=103.97 Aligned_cols=94 Identities=18% Similarity=0.286 Sum_probs=77.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
...++||||+|.|.+|..+ +..|.+|.++|.|+.|...-+++ ..+ +.+..++...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l-~~~f~~v~aTE~S~~Mr~rL~~k-------------g~~--vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERL-APLFKEVYATEASPPMRWRLSKK-------------GFT--VLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHH-HhhcceEEeecCCHHHHHHHHhC-------------CCe--EEehhhhhccCCceEEEee
Confidence 4568999999999999988 79999999999999998777653 122 3344445434468999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.++|..-.+|. .+|+.+++.|+|+|.+++.
T Consensus 158 LNvLDRc~~P~--~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNVLDRCDRPL--TLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhhhccCCHH--HHHHHHHHHhCCCCEEEEE
Confidence 99998877777 9999999999999998763
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=107.34 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=76.6
Q ss_pred CeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
.+|||+|||+|.++..++ ..+ .+|+++|.|+.+++.|++++... ....+++++++|+.+..+ +++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la-~~~p~~~V~avDis~~al~~A~~n~~~~-----~l~~~i~~~~~D~~~~l~-~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACA-YAFPDAEVDAVDISPDALAVAEINIERH-----GLEDRVTLIESDLFAALP-GRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCCcEEEEECchhhhCC-CCCccEEEE
Confidence 589999999999999884 554 48999999999999999997532 122469999999865432 358999998
Q ss_pred chh------h-------hhcCh----------hhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QWC------I-------GHLTD----------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~v------l-------~hl~d----------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+-. + +|-+. .....+++++.+.|+|||.+++
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 621 1 12111 1235789999999999999876
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-11 Score=100.58 Aligned_cols=96 Identities=19% Similarity=0.161 Sum_probs=69.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-------
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------- 225 (272)
+.++.+|||+|||+|.++..++..... +++++|+|+.+ . ..++.++++|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----------CCCceEEEeeCCChhHHHHHHH
Confidence 457789999999999999977533323 59999999854 1 135788888887642
Q ss_pred -CCCCcceeeEechh--------hhhcCh-hhHHHHHHHHHHhcccCcEEEE
Q 024100 226 -PETGRYDVIWVQWC--------IGHLTD-DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 226 -~~~~~fDlIvs~~v--------l~hl~d-~~~~~~l~~~~r~LkpgG~liv 267 (272)
.+.++||+|++..+ +.|+.. .....+|+.+.+.|+|||.+++
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 23458999998643 333221 2245899999999999999887
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=101.53 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=78.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-CCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fDlIv 235 (272)
.+.-|||||||+|-.+..| ...+..++++|+|+.|++.|.+.. . ..+++.+|+- .+++.+++||-++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL-~~~Gh~wiGvDiSpsML~~a~~~e----------~-egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVL-SDSGHQWIGVDISPSMLEQAVERE----------L-EGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchhee-ccCCceEEeecCCHHHHHHHHHhh----------h-hcCeeeeecCCCCCCCCCccceEE
Confidence 4778999999999999966 677889999999999999998642 1 2567778874 5788889999999
Q ss_pred echhhh---------hcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIG---------HLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~---------hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+-.++. |.+-.-+..||..++.+|++|+..+..
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 644332 223334668999999999999987653
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=99.77 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=82.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|+.+. ++++...+|..+|..+...+.|++++... ...|+.+.++|-..--++..+||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aA-vla~l~~~V~siEr~~~L~~~A~~~L~~l------g~~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAA-VLARLVGRVVSIERIEELAEQARRNLETL------GYENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHH-HHHHHhCeEEEEEEcHHHHHHHHHHHHHc------CCCceEEEECCcccCCCCCCCcCEE
Confidence 6788999999999999999 55898889999999999999999998764 3457999999987654455799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+.+.-.+++. +.+.|++||.+++-
T Consensus 143 ~Vtaaa~~vP~~--------Ll~QL~~gGrlv~P 168 (209)
T COG2518 143 IVTAAAPEVPEA--------LLDQLKPGGRLVIP 168 (209)
T ss_pred EEeeccCCCCHH--------HHHhcccCCEEEEE
Confidence 999887666543 36789999998764
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=102.12 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=78.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++..++ ..+ ..++++|+|+.+++.|++++.. ....++.++++|+.+... +++||+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la-~~~~~~~v~~iDis~~~l~~a~~n~~~------~~~~~i~~~~~d~~~~~~-~~~fD~ 178 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALA-KERPDAEVTAVDISPEALAVARRNAKH------GLGARVEFLQGDWFEPLP-GGRFDL 178 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHh------CCCCcEEEEEccccCcCC-CCceeE
Confidence 456799999999999999885 554 6899999999999999998741 124578999999855322 368999
Q ss_pred eEechhh------hhcCh------------------hhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCI------GHLTD------------------DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl------~hl~d------------------~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+++-.. +.+.. ..+..+++++.+.|+|||.+++.
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9985321 11110 12357889999999999998863
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=104.53 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=78.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDl 233 (272)
++.+|||||||+|.++..++ +.+ .++++||+++.+++.|++.+... ...++++++.+|..++- ..+++||+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~-~~~p~~~v~~VEidp~vi~~A~~~f~~~-----~~~~rv~v~~~Da~~~l~~~~~~yD~ 139 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIY-TYLPDTRQTAVEINPQVIAVARNHFELP-----ENGERFEVIEADGAEYIAVHRHSTDV 139 (262)
T ss_pred CCCEEEEECCCHhHHHHHHH-HhCCCCeEEEEECCHHHHHHHHHHcCCC-----CCCCceEEEECCHHHHHHhCCCCCCE
Confidence 46689999999999999775 554 47899999999999999987431 12468999999986642 22358999
Q ss_pred eEechh-hhhcChh-hHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWC-IGHLTDD-DFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~v-l~hl~d~-~~~~~l~~~~r~LkpgG~liv 267 (272)
|++... -...+.. ...+++++|++.|+|||.+++
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 997531 1111111 124899999999999999987
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=102.84 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=84.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--CCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~f 231 (272)
....+|||+|||+|.++..+ +++. .++++||..+.|.+.|++++.. +....++++++.|+.++... ..+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~l-a~r~~~a~I~~VEiq~~~a~~A~~nv~l-----n~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLL-AQRTEKAKIVGVEIQEEAAEMAQRNVAL-----NPLEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred ccCCeEEEecCCcCHHHHHH-hccCCCCcEEEEEeCHHHHHHHHHHHHh-----CcchhceeEehhhHHHhhhccccccc
Confidence 34779999999999999966 5653 5899999999999999999864 23457899999999987532 2469
Q ss_pred eeeEechhh----------------hhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCI----------------GHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl----------------~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+|+=-+ +|...-.++.+++.+.+.|||||.+.++
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 999986432 2333334778999999999999988654
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-10 Score=106.96 Aligned_cols=104 Identities=20% Similarity=0.199 Sum_probs=75.9
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlI 234 (272)
+..+|||+|||+|.++..++... ..+|+++|.|+.|++.|++++... ..+++++++|+.+... ..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-------g~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-------GARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEcchhccccccCCCccEE
Confidence 45689999999999999774332 458999999999999999987532 2378999999865432 23589999
Q ss_pred Eechhhh-----hcCh------------------hhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIG-----HLTD------------------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~-----hl~d------------------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+-... ++.+ +-+..+++.+.+.|+|||.+++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9965310 0000 0134677778899999998765
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=103.40 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=77.8
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
...+|||+|||+|.++..++.+. ..+|+++|.|+.|++.+++++ ++++++++|+.++... .+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----------~~v~~v~~D~~e~~~~-~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----------PEAEWITSDVFEFESN-EKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------cCCEEEECchhhhccc-CCCcEEE
Confidence 34689999999999999775433 458999999999999998864 2578999999887643 5899999
Q ss_pred echhhhhcChhh------------------HHHHHHHHHHhcccCcEEE
Q 024100 236 VQWCIGHLTDDD------------------FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 236 s~~vl~hl~d~~------------------~~~~l~~~~r~LkpgG~li 266 (272)
++-.++|++..+ +.++++.....|+|+|.++
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 999988875432 2456777788999999664
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-10 Score=96.14 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=85.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++++++|||||||.++.+++ .. ..+|+++|-++++++..++++... ..+|+.++.++..+......+||
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~f------g~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARF------GVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHh------CCCcEEEEeccchHhhcCCCCCC
Confidence 5788899999999999999984 44 448999999999999999998654 36799999999977643323799
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.|++... .. +..+|+.+...|+|||.+|..-
T Consensus 105 aiFIGGg-~~-----i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 105 AIFIGGG-GN-----IEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEEECCC-CC-----HHHHHHHHHHHcCcCCeEEEEe
Confidence 9999988 34 3379999999999999998753
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=99.84 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=84.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCC-C-----CCCCCCceEEEEeCCCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-M-----APDMHKATNFFCVPLQDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~-~-----~~~~~~~v~~~~~d~~~~~~~~ 228 (272)
..++.+||..|||.|.-...| +..+.+|+|+|+|+..++.+.+....... . ......+|+++++|+.++++..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~L-a~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWL-AEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHH-HHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCCeEEEeCCCChHHHHHH-HHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 346679999999999999977 67888999999999999998443221100 0 0012357899999999987654
Q ss_pred -CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
++||+|+=..+|+-++.+...+..+.+.++|+|||.+
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 4899999988888888888889999999999999983
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-10 Score=102.36 Aligned_cols=102 Identities=13% Similarity=-0.002 Sum_probs=73.7
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCC
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE 227 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~ 227 (272)
.+.+..+|||+|||+|.++..++ +.. ..|++||+|+.|++...+... ...|+.++..|+... ...
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lA-diVG~~G~VyAVD~s~r~~~dLl~~ak--------~r~NI~~I~~Da~~p~~y~~~ 199 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVS-DLVGPEGVVYAVEFSHRSGRDLTNMAK--------KRPNIVPIIEDARYPQKYRML 199 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHH-HHhCCCCEEEEEECcHHHHHHHHHHhh--------hcCCCEEEECCccChhhhhcc
Confidence 35677899999999999999885 553 479999999986655444331 124788888898542 112
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.++||+|++..+ . +| +...++.++.+.|||||.|++.
T Consensus 200 ~~~vDvV~~Dva--~-pd-q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 200 VPMVDVIFADVA--Q-PD-QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cCCCCEEEEeCC--C-cc-hHHHHHHHHHHhccCCCEEEEE
Confidence 348999998875 2 22 2336677899999999999874
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-10 Score=102.76 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=80.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 231 (272)
+.+.+||+||||.|.++..++ ++ ..+|++||+++.+++.|++.+..... .-..++++++.+|...+- .++++|
T Consensus 90 ~~pkrVLiIGgG~G~~~rell-k~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA-RHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCC
Confidence 457799999999999999885 55 35899999999999999998754211 113568999999975542 124589
Q ss_pred eeeEechhhhhcChhh--HHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDD--FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++...-.+.+... -.+|++.+++.|+|||.++.
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 9999865432222111 23699999999999999875
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=7e-10 Score=104.12 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=79.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHh--ccccCCCCCCCCCceEEEEeCCCCCC-CCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFT-PETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~--l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~ 230 (272)
..+.+||++|||+|..+..++ +.. .+|++||++++|++.|++. +..... ..-..++++++.+|..++- ...++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelL-k~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVL-KYETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHhcCCC
Confidence 456799999999999999886 543 6899999999999999972 211100 0113578999999988753 23458
Q ss_pred ceeeEechhh--hh-cChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 231 YDVIWVQWCI--GH-LTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 231 fDlIvs~~vl--~h-l~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
||+|++...- .. ...---.+|++.|++.|+|||.++...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999987421 01 111111479999999999999987653
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-10 Score=102.28 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=79.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlI 234 (272)
.+.+||++|||+|.++..++... ..+++++|+++.+++.|++.+..... .-..++++++.+|..++- ..+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 45599999999999999886433 46899999999999999998743210 112457888888875531 123689999
Q ss_pred EechhhhhcChhh--HHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDD--FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv~ 268 (272)
++......-+... ..++++.+++.|+|||.++..
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865422211222 247999999999999998764
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-10 Score=101.51 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=73.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||||||+|+.|. +++... ..|+.||..+.+++.|++++... ...++.+.++|...-.+...+|
T Consensus 70 l~pg~~VLeIGtGsGY~aA-lla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------~~~nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAA-LLAHLVGPVGRVVSVERDPELAERARRNLARL------GIDNVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp C-TT-EEEEES-TTSHHHH-HHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------TTHSEEEEES-GGGTTGGG-SE
T ss_pred cCCCCEEEEecCCCcHHHH-HHHHhcCccceEEEECccHHHHHHHHHHHHHh------ccCceeEEEcchhhccccCCCc
Confidence 6788999999999999999 446653 25899999999999999998653 3458999999976544445689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|.|+++.....++ ..+.+.|++||.++.
T Consensus 143 D~I~v~~a~~~ip--------~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 143 DRIIVTAAVPEIP--------EALLEQLKPGGRLVA 170 (209)
T ss_dssp EEEEESSBBSS----------HHHHHTEEEEEEEEE
T ss_pred CEEEEeeccchHH--------HHHHHhcCCCcEEEE
Confidence 9999998875443 235677999999876
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-10 Score=99.61 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=73.9
Q ss_pred CCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--CCccee
Q 024100 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fDl 233 (272)
+.+|||+|||+|.++..++ +.+ .+|+++|.|+.+++.|++++.. ..++++++|+.+.... .++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la-~~~~~~~v~~vDis~~al~~A~~N~~~---------~~~~~~~~D~~~~l~~~~~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALA-AALDGIELHAADIDPAAVRCARRNLAD---------AGGTVHEGDLYDALPTALRGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHHHHH---------cCCEEEEeechhhcchhcCCCEeE
Confidence 4589999999999999874 443 3899999999999999998742 1247899998764321 257999
Q ss_pred eEechhh------hhcChh------------------hHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCI------GHLTDD------------------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl------~hl~d~------------------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+++--. ..++.+ -+..++..+.+.|+|||.+++.
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9987421 111111 1347888888999999988753
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-10 Score=101.16 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||+|-++... ++.+. .|.++|++|..++.|+++... +.....+..-..+....+ ..++||+|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa-~kLGA~~v~g~DiDp~AV~aa~eNa~~-----N~v~~~~~~~~~~~~~~~-~~~~~DvIV 234 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAA-AKLGAKKVVGVDIDPQAVEAARENARL-----NGVELLVQAKGFLLLEVP-ENGPFDVIV 234 (300)
T ss_pred CCCEEEEecCChhHHHHHH-HHcCCceEEEecCCHHHHHHHHHHHHH-----cCCchhhhcccccchhhc-ccCcccEEE
Confidence 6779999999999999977 57665 599999999999999998742 111111222223333332 235999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|-.- .-+..+...+++.|+|||+++.+
T Consensus 235 ANILA-----~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 235 ANILA-----EVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred ehhhH-----HHHHHHHHHHHHHcCCCceEEEE
Confidence 98743 22668999999999999999875
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=105.12 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=79.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|..|..++... ...|+++|.|+.|++.+++++... ...+++++++|+.++.+ +++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g~~~v~~~~~Da~~~~~-~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------GITIIETIEGDARSFSP-EEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh------CCCeEEEEeCccccccc-CCCCC
Confidence 3456799999999999998774322 348999999999999999998643 23478999999988753 36899
Q ss_pred eeEec------hhh-------hhcChhh-------HHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQ------WCI-------GHLTDDD-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~------~vl-------~hl~d~~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++. .++ .+.+..+ ...+|.++.+.|+|||.++.+
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99952 111 1222222 236899999999999998764
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=94.62 Aligned_cols=112 Identities=19% Similarity=0.333 Sum_probs=71.7
Q ss_pred CCCeeeEeecccch--HHHHH-HHh----cCC---cEEEEeCCHHHHHHHHHhccc---cCCC-----------------
Q 024100 157 QHLVALDCGSGIGR--ITKNL-LIR----YFN---EVDLLEPVSHFLDAARESLAP---ENHM----------------- 206 (272)
Q Consensus 157 ~~~~VLDiGcGtG~--~t~~L-La~----~~~---~v~~vD~S~~mld~A~~~l~~---~~~~----------------- 206 (272)
++.+|+..||+||. +|..+ +.. ... ++.++|+|+.+|+.|++-.=. .+..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999993 22222 223 122 789999999999999862100 0000
Q ss_pred --CCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 207 --~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....-..|+|...|+.+.++..+.||+|+|.+||.|++.+...++++++.+.|+|||++++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 00112579999999988444457999999999999999998889999999999999999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.4e-10 Score=97.89 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=84.2
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~ 216 (272)
..||..+.. ..++.+|||+|||+|..+..+++.. ..+|+.+|.++++++.|++++... +...++++
T Consensus 57 g~~L~~l~~-------~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-----gl~~~i~~ 124 (234)
T PLN02781 57 GLFLSMLVK-------IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-----GVDHKINF 124 (234)
T ss_pred HHHHHHHHH-------HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEE
Confidence 445665554 2356799999999999988775332 348999999999999999998654 22357999
Q ss_pred EEeCCCCCCC------CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 217 FCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 217 ~~~d~~~~~~------~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+.+|+.+.-. +.++||+|++... .+....++..+.+.|+|||.+++
T Consensus 125 ~~gda~~~L~~l~~~~~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 125 IQSDALSALDQLLNNDPKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEccHHHHHHHHHhCCCCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999876411 1358999988533 24456889999999999998765
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=105.36 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=81.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 228 (272)
..++.+|||+|||+|..|..++.... ..|+++|.++.|++.+++++... ...++.++++|+.+++ ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------GLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc------CCCeEEEEeCChhhccccccccc
Confidence 34667999999999999998853322 47999999999999999998643 2347899999998764 234
Q ss_pred CcceeeEec------hhhhhcChh-------h-------HHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~------~vl~hl~d~-------~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
++||.|++. .++++-++. + ..++|.++.+.|+|||.++.+
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 689999952 344443321 1 247899999999999998754
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-10 Score=102.27 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=71.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++... ++.+. +|.++|+++..++.|++++.. +....++.+ ....+. ..++||+|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA-~klGA~~v~a~DiDp~Av~~a~~N~~~-----N~~~~~~~v--~~~~~~--~~~~~dlv 229 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAA-AKLGAKKVVAIDIDPLAVEAARENAEL-----NGVEDRIEV--SLSEDL--VEGKFDLV 229 (295)
T ss_dssp STTSEEEEES-TTSHHHHHH-HHTTBSEEEEEESSCHHHHHHHHHHHH-----TT-TTCEEE--SCTSCT--CCS-EEEE
T ss_pred cCCCEEEEeCCcHHHHHHHH-HHcCCCeEEEecCCHHHHHHHHHHHHH-----cCCCeeEEE--EEeccc--ccccCCEE
Confidence 35679999999999999955 56655 799999999999999999743 122233333 222333 23799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++|-.. +-+..++..+.+.|+|||++|.+
T Consensus 230 vANI~~-----~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 230 VANILA-----DVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp EEES-H-----HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred EECCCH-----HHHHHHHHHHHHhhCCCCEEEEc
Confidence 998775 34678899999999999999875
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=103.19 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=77.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 230 (272)
..++.+|||+|||+|..+..++ +.. ..|+++|.|+.|++.+++++... ..+++++++|+.+.+ +..++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la-~~~~~~~v~a~D~s~~~l~~~~~n~~~~-------g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHIL-ELAPQAQVVALDIDAQRLERVRENLQRL-------GLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHc-------CCCeEEEEcCcccchhhcccCC
Confidence 3467799999999999999885 543 48999999999999999998542 224689999987653 22458
Q ss_pred ceeeEech------hhhh-------cChhh-------HHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQW------CIGH-------LTDDD-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~------vl~h-------l~d~~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
||.|++.- ++.+ .+..+ ..++|.++.+.|+|||.++.+
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999422 1111 11111 247899999999999998854
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-10 Score=98.93 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=85.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
....++|||||.|.+...|+.+...+.+.+|.|-.|++.++..- +..-...++.+|-+.+++.++++|+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q--------dp~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ--------DPSIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC--------CCceEEEEEecchhcccccccchhhhhh
Confidence 44589999999999999998777889999999999999997642 2334567888998888888899999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+..+|..+|-- ..+.+|+..|||+|.|+
T Consensus 144 SlslHW~NdLP--g~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 144 SLSLHWTNDLP--GSMIQCKLALKPDGLFI 171 (325)
T ss_pred hhhhhhhccCc--hHHHHHHHhcCCCccch
Confidence 99998876644 79999999999999886
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=103.18 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=78.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 230 (272)
..++.+|||+|||+|..|..++ +.. ..|+++|+|+.+++.+++++...+ ....+.+.++|....++ ..++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la-~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-----~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHIL-ELAPQAQVVALDIHEHRLKRVYENLKRLG-----LTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeccccccccccccccc
Confidence 3466799999999999999885 543 589999999999999999986431 11234446677654432 3468
Q ss_pred ceeeEe------chhhhhcChh-------h-------HHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWV------QWCIGHLTDD-------D-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs------~~vl~hl~d~-------~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
||.|++ ..++++.++- + ..++|.++.+.|+|||.++.+
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999994 2355554431 1 247999999999999998865
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=107.39 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=80.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHh--ccccCCCCCCCCCceEEEEeCCCCCC-CCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFT-PETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~--l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~ 230 (272)
+++.+|||+|||+|..+..++ ++. .+|+++|++++|++.|+++ +...+. ..-.+++++++.+|..++. ..+++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll-~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~-~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVL-KYPDVEQVTLVDLDPAMTELARTSPALRALNG-GALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHH-hCCCcCeEEEEECCHHHHHHHHhCCcchhhhc-cccCCCceEEEEChHHHHHHhCCCC
Confidence 456799999999999999886 543 5999999999999999984 322110 0012468999999987752 22368
Q ss_pred ceeeEechhhhhcChhh---HHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDD---FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~---~~~~l~~~~r~LkpgG~liv~ 268 (272)
||+|++.......+... -.++++.+++.|+|||.+++.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99999985432211110 136999999999999998864
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=103.47 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=79.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 231 (272)
..++.+|||+|||+|..|..++... ...|+++|.|+.+++.+++++... ...++.+.+.|...++ ..+++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------KLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhhhhhhhhccC
Confidence 3566799999999999999885433 458999999999999999998653 2346899999988765 234689
Q ss_pred eeeEec---hhhhhcC-hh----------------hHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQ---WCIGHLT-DD----------------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~---~vl~hl~-d~----------------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|++. ..++.+. ++ ...++|.++.+.|+|||.++.+
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999952 1122221 11 1246799999999999988643
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=96.16 Aligned_cols=96 Identities=10% Similarity=0.083 Sum_probs=72.3
Q ss_pred CCeeeEeecccchHHHHHHHh----cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 158 HLVALDCGSGIGRITKNLLIR----YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~----~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+.+|||+|||+|.++..++.+ ...+|++||+++.+++.|++++ .++.++++|+....+ +++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----------~~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----------PEATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----------cCCEEEEcchhcccc-cCCccE
Confidence 569999999999999977432 1348999999999999999875 247899999987664 358999
Q ss_pred eEechhhhhcCh----------hhHHHHHHHHHHhcccCcEE
Q 024100 234 IWVQWCIGHLTD----------DDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 234 Ivs~~vl~hl~d----------~~~~~~l~~~~r~LkpgG~l 265 (272)
|+++--++-+.. .-...++.+..+++++|++|
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 999865442221 11346888888877777763
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=102.87 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=78.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 232 (272)
.++.+|||+|||+|..+..++... ...|+++|+++.+++.+++++... ...+++++++|+.++.. -.++||
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------GLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCCcccccchhcccCC
Confidence 456799999999999999885433 358999999999999999988543 23468999999977631 125899
Q ss_pred eeEech------hhhhcC-------hhh-------HHHHHHHHHHhcccCcEEEE
Q 024100 233 VIWVQW------CIGHLT-------DDD-------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 233 lIvs~~------vl~hl~-------d~~-------~~~~l~~~~r~LkpgG~liv 267 (272)
+|++.- ++.|-+ ..+ ...+|+.+.+.|+|||.++.
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy 377 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVY 377 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 999642 111111 111 13689999999999999874
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-09 Score=96.14 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=78.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|..|..++... ...|+++|.++.+++.+++++... ...++.+++.|...++...++||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC------GVLNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEecCCHHHhhhhccCCC
Confidence 3466799999999999999774333 247999999999999999998653 23478999999877654445799
Q ss_pred eeEec------hhhhh-------cChh-------hHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQ------WCIGH-------LTDD-------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~------~vl~h-------l~d~-------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.|++. .++.+ .+.. ...++|+++.+.|+|||.++-+
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99952 12211 1111 1236999999999999988643
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=96.94 Aligned_cols=100 Identities=20% Similarity=0.190 Sum_probs=74.3
Q ss_pred eeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+|||+|||+|.++..+ +..++ .|+++|+|+..++.|+++.... ...++.++.+|+.+- ..++||+|++|
T Consensus 113 ~ilDlGTGSG~iai~l-a~~~~~~~V~a~Dis~~Al~~A~~Na~~~------~l~~~~~~~~dlf~~--~~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIAL-AKEGPDAEVIAVDISPDALALARENAERN------GLVRVLVVQSDLFEP--LRGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHH-HhhCcCCeEEEEECCHHHHHHHHHHHHHc------CCccEEEEeeecccc--cCCceeEEEeC
Confidence 7999999999999988 57766 9999999999999999998542 114556666665432 23589999986
Q ss_pred hhhhhcChh-------------------------hHHHHHHHHHHhcccCcEEEEecC
Q 024100 238 WCIGHLTDD-------------------------DFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 238 ~vl~hl~d~-------------------------~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
-- |++.+ -...++.+..+.|+|||.+++--+
T Consensus 184 PP--Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 184 PP--YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CC--CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 32 12111 245788888999999998876543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=105.10 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=75.5
Q ss_pred CCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
+.+|||+|||+|.++..++... ..+|+++|.|+.+++.|++++... ....+++++++|+.+.. +.++||+|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-----~l~~~v~~~~~D~~~~~-~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-----EVTDRIQIIHSNWFENI-EKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-----CCccceeeeecchhhhC-cCCCccEEEE
Confidence 4689999999999999885333 358999999999999999987432 12346899999975432 2358999998
Q ss_pred chh--------------hhhcC-------h---hhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QWC--------------IGHLT-------D---DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~v--------------l~hl~-------d---~~~~~~l~~~~r~LkpgG~liv 267 (272)
+-. ..|-+ . ..+..+++++.+.|+|||.+++
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 531 11110 0 1134678888999999999875
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=98.90 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE
Q 024100 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (272)
Q Consensus 136 ~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~ 215 (272)
.....|++..+.+.. ..+...++|+|||-|.-.+..-......++++|++..-|+.|+++...-..+.....=.+.
T Consensus 100 RnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~ 175 (389)
T KOG1975|consen 100 RNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAV 175 (389)
T ss_pred hhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeE
Confidence 444556665544333 2456689999999998888775556779999999999999999876432111001112467
Q ss_pred EEEeCCCC------CCCCCCcceeeEechhhhhc--ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 216 FFCVPLQD------FTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 216 ~~~~d~~~------~~~~~~~fDlIvs~~vl~hl--~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+++|... +++.+.+||+|-|++++|+- +.+...-+|+++.+.|+|||++|-+
T Consensus 176 f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 176 FIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred EEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 88888632 23333359999999999887 3455668999999999999999854
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-09 Score=101.59 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=74.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~f 231 (272)
.++.+|||+|||+|.++..+ ++.+..|+++|.|+.|++.|++++... ...+++|+++|+.+.. +.+++|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~l-a~~~~~V~gvD~s~~al~~A~~n~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPL-ARQAAEVVGVEGVEAMVERARENARRN------GLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred CCCCEEEEEeccCCHHHHHH-HHhCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEeChHHhhhhhhhhcCCC
Confidence 45679999999999999977 577789999999999999999987432 2347999999987542 224579
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+++-.-.- ....++.+.+ ++|++.++++
T Consensus 369 D~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 369 DKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred CEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEE
Confidence 99998644211 1234444444 6888888775
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=97.43 Aligned_cols=100 Identities=13% Similarity=-0.002 Sum_probs=72.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlIv 235 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|.|+.|++.|++++... ...+++|+++|+.++.. ..+.||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~l-a~~~~~V~gvD~s~~av~~A~~n~~~~------~l~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHC-ATPGMQLTGIEISAEAIACAKQSAAEL------GLTNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHH-HhcCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEcCHHHHHHhcCCCCeEEE
Confidence 3569999999999999988 577789999999999999999987532 23579999999987643 234799999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++-.- ..+..-+.++...++|++.++++
T Consensus 246 ~dPPr-----~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 246 VNPPR-----RGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred ECCCC-----CCccHHHHHHHHHcCCCeEEEEE
Confidence 87331 11112222233446788877765
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-09 Score=91.61 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=76.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlIv 235 (272)
...+|||+|||+|.++..++++...+|+++|.++.+++.+++++... ...+++++++|+.++.. ..++||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~------~~~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL------KAGNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEEchHHHHHhhcCCCceEEE
Confidence 34699999999999999766676779999999999999999987542 22468999999876432 234799999
Q ss_pred echhhhhcChhhHHHHHHHHHH--hcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKE--NIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r--~LkpgG~liv~ 268 (272)
++--+.. . -...++..+.. .|+|+|.+++.
T Consensus 127 ~DPPy~~--g-~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 127 VDPPFRK--G-LLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred ECCCCCC--C-hHHHHHHHHHHCCCcCCCcEEEEE
Confidence 9876422 1 12245555554 47899988765
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.6e-09 Score=95.14 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=81.7
Q ss_pred CCeeeEeecccch--HHHHH-HHhc------CCcEEEEeCCHHHHHHHHHhccccC------------------------
Q 024100 158 HLVALDCGSGIGR--ITKNL-LIRY------FNEVDLLEPVSHFLDAARESLAPEN------------------------ 204 (272)
Q Consensus 158 ~~~VLDiGcGtG~--~t~~L-La~~------~~~v~~vD~S~~mld~A~~~l~~~~------------------------ 204 (272)
+.+|+..||+||. +|..+ +... .-+|.++|+|+.+|+.|++-.=...
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999993 23322 2232 1368999999999999987420000
Q ss_pred -CCCCCCCCceEEEEeCCCCCCC-CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 205 -HMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 205 -~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.........|+|...|+.+.++ ..+.||+|+|.+++.|++++...++++++.+.|+|||++++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0001122568999999987543 246899999999999999988889999999999999998864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.7e-09 Score=106.97 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=78.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCC-CceEEEEeCCCCCCC-CCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFTP-ETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~fDl 233 (272)
++.+|||+|||+|.++..++ ..+. .|++||.|+.+++.|++++..- ... .+++|+++|+.++.. ..++||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa-~~Ga~~V~~vD~s~~al~~a~~N~~~n-----g~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAA-LGGAKSTTTVDMSNTYLEWAERNFALN-----GLSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCccceEEEEccHHHHHHHcCCCcCE
Confidence 35699999999999999885 5544 6999999999999999998532 112 478999999866421 1358999
Q ss_pred eEechhh-h------hc--ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCI-G------HL--TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl-~------hl--~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++.--. . .. ...++..++..+.++|+|||.+++.
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9985221 0 00 0134567888999999999988764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.5e-09 Score=98.47 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=77.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCC-CceEEEEeCCCCCCC----CCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFTP----ETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~-~~v~~~~~d~~~~~~----~~~~f 231 (272)
++.+|||+|||+|.++...+.....+|++||.|+.+++.|++++... +.. .+++++++|+.++.. ..++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N-----gl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN-----KLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 45689999999999998765444458999999999999999998532 111 378999999876521 23589
Q ss_pred eeeEechhhhhcCh--------hhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTD--------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d--------~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++.--. ...+ ..+..++..+.+.|+|||.++.
T Consensus 295 DlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 295 DVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred CEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 999987432 1111 1345666778899999998875
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.4e-09 Score=93.37 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=66.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.+|..++ +.+.+|+++|+++.|++.+++++. ..+++++++|+.++++++-.+|.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~-~~~~~v~avE~d~~~~~~~~~~~~---------~~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLL-ERAAKVTAVEIDRDLAPILAETFA---------EDNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHH-HhCCcEEEEECCHHHHHHHHHhhc---------cCceEEEEChhhcCCHHHcCcceE
Confidence 4566799999999999999885 667899999999999999998762 257999999999887543225888
Q ss_pred EechhhhhcChhhHHHHH
Q 024100 235 WVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l 252 (272)
+++-.. +++.+-+.+++
T Consensus 110 v~NlPY-~iss~ii~~~l 126 (272)
T PRK00274 110 VANLPY-NITTPLLFHLL 126 (272)
T ss_pred EEeCCc-cchHHHHHHHH
Confidence 888664 44433333333
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=90.77 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=66.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.+|..++ +.+.+|+++|.++.|++.+++++.. ..+++++++|+.+++++ .||.|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~-~~~~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELA-KRAKKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHH-HhCCEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence 4566799999999999999885 6678999999999999999988732 35799999999988654 58999
Q ss_pred EechhhhhcChhh
Q 024100 235 WVQWCIGHLTDDD 247 (272)
Q Consensus 235 vs~~vl~hl~d~~ 247 (272)
+++... +++.+.
T Consensus 96 v~NlPy-~i~s~~ 107 (258)
T PRK14896 96 VSNLPY-QISSPI 107 (258)
T ss_pred EEcCCc-ccCcHH
Confidence 998775 444333
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-09 Score=90.29 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=83.9
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEE
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~ 216 (272)
.||..++. ...+.+||||||++|+.+..++ +. ..+++.+|.++.+.+.|++++..+. ...++++
T Consensus 35 ~lL~~l~~-------~~~~k~vLEIGt~~GySal~la-~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-----~~~~I~~ 101 (205)
T PF01596_consen 35 QLLQMLVR-------LTRPKRVLEIGTFTGYSALWLA-EALPEDGKITTIEIDPERAEIARENFRKAG-----LDDRIEV 101 (205)
T ss_dssp HHHHHHHH-------HHT-SEEEEESTTTSHHHHHHH-HTSTTTSEEEEEESSHHHHHHHHHHHHHTT-----GGGGEEE
T ss_pred HHHHHHHH-------hcCCceEEEeccccccHHHHHH-HhhcccceEEEecCcHHHHHHHHHHHHhcC-----CCCcEEE
Confidence 45655554 2346699999999999999885 54 4589999999999999999987542 3468999
Q ss_pred EEeCCCCCCC------CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 217 FCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 217 ~~~d~~~~~~------~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.+|..++-. +.++||+|++-..= .+...+|..+.+.|+|||.+++-.
T Consensus 102 ~~gda~~~l~~l~~~~~~~~fD~VFiDa~K-----~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 102 IEGDALEVLPELANDGEEGQFDFVFIDADK-----RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EES-HHHHHHHHHHTTTTTSEEEEEEESTG-----GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEeccHhhHHHHHhccCCCceeEEEEcccc-----cchhhHHHHHhhhccCCeEEEEcc
Confidence 9999865311 12589999986642 346688999999999999887644
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=91.33 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=84.3
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~ 215 (272)
..|+..++. ..++.+|||+|+|+|..+..++ .. ...++.+|.++++.+.|+++++.++ ...+++
T Consensus 107 g~lL~~L~~-------~~~ak~VLEIGT~tGySal~lA-~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-----l~~~I~ 173 (278)
T PLN02476 107 AQLLAMLVQ-------ILGAERCIEVGVYTGYSSLAVA-LVLPESGCLVACERDSNSLEVAKRYYELAG-----VSHKVN 173 (278)
T ss_pred HHHHHHHHH-------hcCCCeEEEecCCCCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEE
Confidence 345555544 3456799999999999999884 53 3468999999999999999997642 345899
Q ss_pred EEEeCCCCCCC------CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 216 FFCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 216 ~~~~d~~~~~~------~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++.+|+.+.-+ ..++||+|++-.- ......++..+.+.|+|||.+++
T Consensus 174 li~GdA~e~L~~l~~~~~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 174 VKHGLAAESLKSMIQNGEGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEEcCHHHHHHHHHhcccCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE
Confidence 99999865321 1258999998654 24566899999999999998765
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=89.99 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce--
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD-- 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD-- 232 (272)
..++.+|||+|||+|.+|..+ ++.+..|+++|+++.|++.+++++.. ..+++++++|+.+++++ .||
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L-~~~~~~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPL-LKRAKKVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHH-HHhCCcEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence 456779999999999999988 57778999999999999999987631 35789999999888754 577
Q ss_pred -eeEechhhhhcChhhHHHHH
Q 024100 233 -VIWVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 233 -lIvs~~vl~hl~d~~~~~~l 252 (272)
+|+++..+ |++.+-+.+++
T Consensus 96 ~~vvsNlPy-~i~~~il~~ll 115 (253)
T TIGR00755 96 LKVVSNLPY-NISSPLIFKLL 115 (253)
T ss_pred ceEEEcCCh-hhHHHHHHHHh
Confidence 77777665 55544433444
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=96.13 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=74.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~f 231 (272)
.+..+|||+|||+|.++..+ ++....|+++|.|+.|++.|++++... ...+++|+++|+.++. ..+++|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~l-a~~~~~V~~vE~~~~av~~a~~n~~~~------~~~nv~~~~~d~~~~l~~~~~~~~~~ 363 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPL-AKQAKSVVGIEVVPESVEKAQQNAELN------GIANVEFLAGTLETVLPKQPWAGQIP 363 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHH-HHhCCEEEEEEcCHHHHHHHHHHHHHh------CCCceEEEeCCHHHHHHHHHhcCCCC
Confidence 45579999999999999987 577789999999999999999987532 2358999999986531 223579
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++.-.= ..-. ..+++.+.+ ++|++.++++
T Consensus 364 D~vi~dPPr--~G~~--~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 364 DVLLLDPPR--KGCA--AEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CEEEECcCC--CCCC--HHHHHHHHh-cCCCEEEEEc
Confidence 999975431 1101 245665554 7898888765
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.1e-08 Score=86.48 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCc
Q 024100 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (272)
Q Consensus 136 ~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~ 213 (272)
...-.||..++. ...+.+|||||.++|+.+..++...- .+++.+|.++++.+.|++++..+. ....
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-----~~~~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-----VDDR 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-----Ccce
Confidence 455677777766 34677999999999999998853332 368899999999999999997652 3345
Q ss_pred eEEEE-eCCCCC-C-CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 214 TNFFC-VPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 214 v~~~~-~d~~~~-~-~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+..+. +|..+. . ...++||+|++-..= .....+|..+.+.|+|||.++.
T Consensus 113 i~~~~~gdal~~l~~~~~~~fDliFIDadK-----~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 113 IELLLGGDALDVLSRLLDGSFDLVFIDADK-----ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEEecCcHHHHHHhccCCCccEEEEeCCh-----hhCHHHHHHHHHHhCCCcEEEE
Confidence 77777 465432 2 234799999986552 3455899999999999998765
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-09 Score=92.69 Aligned_cols=86 Identities=17% Similarity=0.278 Sum_probs=67.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+....|.|+|||-+.++. .....|.-.|..+ .+-+++.+|+.+.|.++++.|++|
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------------~~~~V~~cDm~~vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA---------------------VNERVIACDMRNVPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeec---------------------CCCceeeccccCCcCccCcccEEE
Confidence 456789999999999775 3445676665321 244677899999999999999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+.+|+- +| +..|+++.+|+|++||.+.+.|
T Consensus 234 ~CLSLMg-tn--~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 234 FCLSLMG-TN--LADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred eeHhhhc-cc--HHHHHHHHHHHhccCceEEEEe
Confidence 9888744 33 4489999999999999998876
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=93.52 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=76.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+-+...|||+|||||.++. +.++.+ .+|.+||.|. +.+.|++.+.. +.....++++.+.++++..+.++.|+
T Consensus 58 lf~dK~VlDVGcGtGILS~-F~akAGA~~V~aVe~S~-ia~~a~~iv~~-----N~~~~ii~vi~gkvEdi~LP~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSM-FAAKAGARKVYAVEASS-IADFARKIVKD-----NGLEDVITVIKGKVEDIELPVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHH-HHHHhCcceEEEEechH-HHHHHHHHHHh-----cCccceEEEeecceEEEecCccceeE
Confidence 4567799999999999999 445664 5899999888 55888887642 23456799999999998766579999
Q ss_pred eEechhhhhcC-hhhHHHHHHHHHHhcccCcEEE
Q 024100 234 IWVQWCIGHLT-DDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 234 Ivs~~vl~hl~-d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+|-|.=..+- +.=+..+|-.=-+.|+|||.++
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 99877532221 1112233333358999999986
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=85.07 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=60.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
-.+..|+|+|||||.++...+ -.+ ..|.+||+++++++.++++... ...++.|+++|+.++. ..+|.+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~-~lGa~~V~~vdiD~~a~ei~r~N~~~-------l~g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAA-LLGASRVLAVDIDPEALEIARANAEE-------LLGDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHH-hcCCcEEEEEecCHHHHHHHHHHHHh-------hCCceEEEEcchhhcC---CccceE
Confidence 356689999999999999774 444 6999999999999999999753 4568999999999884 578988
Q ss_pred Eech
Q 024100 235 WVQW 238 (272)
Q Consensus 235 vs~~ 238 (272)
++|-
T Consensus 113 imNP 116 (198)
T COG2263 113 IMNP 116 (198)
T ss_pred EECC
Confidence 8764
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-08 Score=92.04 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=74.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-CCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fDlIv 235 (272)
+..+|||+|||+|.++..++ ..+..|++||.++.+++.|++++... ...+++|+++|+.++... .++||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la-~~~~~v~~vE~~~~av~~a~~N~~~~------~~~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCA-GPDTQLTGIEIESEAIACAQQSAQML------GLDNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHh-hcCCeEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHHhcCCCCCEEE
Confidence 34689999999999999884 66789999999999999999987532 224799999999775421 24699999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.=--..+ ++ .+++.+. .++|++.++++-
T Consensus 306 ~DPPr~G~-~~---~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 306 VNPPRRGI-GK---ELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ECCCCCCC-cH---HHHHHHH-hcCCCeEEEEEe
Confidence 87442121 12 3444443 478999888763
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.4e-08 Score=85.75 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=75.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCC---CC---------------------
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHM---AP--------------------- 208 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~---~~--------------------- 208 (272)
...+..+|||||-.|.+|..++ +.|. .+.|+|+++..|..|+++++-.... ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~ia-k~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIA-KDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHH-HhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3456789999999999999884 6533 7899999999999999987432110 00
Q ss_pred -----CCCCceEE-------EEeCCCCCCCCCCcceeeEec----hhhhhcC--hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 209 -----DMHKATNF-------FCVPLQDFTPETGRYDVIWVQ----WCIGHLT--DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 209 -----~~~~~v~~-------~~~d~~~~~~~~~~fDlIvs~----~vl~hl~--d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....++.| ...|+.++ ....||+|.|- |+ ||. |+.+..||+++.++|.|||++|+-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~--~~~~fDiIlcLSiTkWI--HLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDM--IQPEFDIILCLSITKWI--HLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhh--ccccccEEEEEEeeeeE--ecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00011111 12223322 33479999963 44 665 577999999999999999999863
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-08 Score=83.22 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=69.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 228 (272)
..++.+|||+|||+|-.+..+ +.. ..+|+++|..+ .++..+.++..-. .....++.+...++.+-. ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~-a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~---~~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAA-AKLFGAARVVLTDYNE-VLELLRRNIELNG---SLLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHH-HHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-
T ss_pred hcCCceEEEECCccchhHHHH-HhccCCceEEEeccch-hhHHHHHHHHhcc---ccccccccCcEEEecCccccccccc
Confidence 346679999999999999966 566 67999999988 8999988875310 012457888888886521 233
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++||+|+.+-++.. +..+..+++-+.++|+|+|.+++.
T Consensus 118 ~~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 118 HSFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp SSBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred ccCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999965 455668999999999999876654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=88.82 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=79.0
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlI 234 (272)
.+.+||.+|+|.|.+++.++... ..++++||+++.+++.|++.+..... .-..++++++.+|...+- ..+++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccEE
Confidence 46699999999999999887432 46899999999999999998753210 012578999999987652 233689999
Q ss_pred Eechh-------hhhcChhhHHHHHH-HHHHhcccCcEEEEe
Q 024100 235 WVQWC-------IGHLTDDDFVSFFK-RAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~v-------l~hl~d~~~~~~l~-~~~r~LkpgG~liv~ 268 (272)
++-.. ..++-. .+|++ .|++.|+|||.++..
T Consensus 181 i~D~~dp~~~~~~~~Lyt---~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYT---KSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecCCCccccCcchhhcc---HHHHHHHHHHhcCCCcEEEEe
Confidence 97621 112222 25888 899999999998754
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=90.16 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||||||+|.+|..++ +...+|+++|+++.|++.+++++... ....+++++++|+.+++.+ .||+|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll-~~~~~V~avEiD~~li~~l~~~~~~~-----~~~~~v~ii~~Dal~~~~~--~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLL-QLAKKVIAIEIDPRMVAELKKRFQNS-----PLASKLEVIEGDALKTEFP--YFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHH-HhCCcEEEEECCHHHHHHHHHHHHhc-----CCCCcEEEEECCHhhhccc--ccCEE
Confidence 4567799999999999999885 66789999999999999999987431 1235899999999877643 69999
Q ss_pred EechhhhhcChhhHHHHH
Q 024100 235 WVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l 252 (272)
+++... +++.+.+..++
T Consensus 106 vaNlPY-~Istpil~~ll 122 (294)
T PTZ00338 106 VANVPY-QISSPLVFKLL 122 (294)
T ss_pred EecCCc-ccCcHHHHHHH
Confidence 987665 55555544444
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=8e-08 Score=101.11 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=75.7
Q ss_pred CCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCC----------CCCCCCceEEEEeCCCCCC
Q 024100 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHM----------APDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~----------~~~~~~~v~~~~~d~~~~~ 225 (272)
+.+|||+|||+|.++..++ ..+ .+|+++|+|+.+++.|++++...... ......+++|+++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La-~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIA-EKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4589999999999999884 544 48999999999999999987531100 0011246999999987653
Q ss_pred CCC-CcceeeEechh--------------hhh------------cC-------hh---hHHHHHHHHHHhcccCcEEEE
Q 024100 226 PET-GRYDVIWVQWC--------------IGH------------LT-------DD---DFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 226 ~~~-~~fDlIvs~~v--------------l~h------------l~-------d~---~~~~~l~~~~r~LkpgG~liv 267 (272)
... .+||+||+|=- ..| .. ++ -..+++.+..+.|+|||.+++
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 221 36999997632 111 00 00 125678888899999998875
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=85.04 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=83.2
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
++.++.+|||.|.|+|.+|..|+.-.+ .+|+.+|.-+.+.+.|++|+..+ ....++++...|+.+...++ .|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-----~l~d~v~~~~~Dv~~~~~~~-~v 164 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-----GLGDRVTLKLGDVREGIDEE-DV 164 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-----ccccceEEEecccccccccc-cc
Confidence 478899999999999999998842233 48999999999999999999764 23345899999998876554 89
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|+. -+++|- .++..+++.|+|||.+++-
T Consensus 165 Dav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 165 DAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred CEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEE
Confidence 99886 455676 8999999999999988753
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.9e-08 Score=85.68 Aligned_cols=111 Identities=15% Similarity=0.181 Sum_probs=84.1
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~ 215 (272)
..||..++. ...+.+|||||+++|..|..++ .. ..+++.+|.++++.+.|++++..+ +...+|+
T Consensus 68 g~lL~~l~~-------~~~ak~iLEiGT~~GySal~la-~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----g~~~~I~ 134 (247)
T PLN02589 68 GQFLNMLLK-------LINAKNTMEIGVYTGYSLLATA-LALPEDGKILAMDINRENYELGLPVIQKA-----GVAHKID 134 (247)
T ss_pred HHHHHHHHH-------HhCCCEEEEEeChhhHHHHHHH-hhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----CCCCceE
Confidence 456666654 2346699999999999999874 43 348999999999999999999754 2346899
Q ss_pred EEEeCCCCCCCC-------CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 216 FFCVPLQDFTPE-------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 216 ~~~~d~~~~~~~-------~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++.+++.+.-+. .++||+|++-.- ......+|..+.+.|+|||.|++
T Consensus 135 ~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 135 FREGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEeccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE
Confidence 999998664211 258999998644 23355788889999999998764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-08 Score=86.63 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=55.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++...|.|+|||.+.++..+ +....|.-.|..+ .+-.+..+|+...|.++++.|++|
T Consensus 71 ~~~~viaD~GCGdA~la~~~--~~~~~V~SfDLva---------------------~n~~Vtacdia~vPL~~~svDv~V 127 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV--PNKHKVHSFDLVA---------------------PNPRVTACDIANVPLEDESVDVAV 127 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH----S---EEEEESS----------------------SSTTEEES-TTS-S--TT-EEEEE
T ss_pred CCCEEEEECCCchHHHHHhc--ccCceEEEeeccC---------------------CCCCEEEecCccCcCCCCceeEEE
Confidence 44569999999999999855 3334677776432 122467899999999989999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+.+|.-- ++..++.+..|+|||||.+.+.|
T Consensus 128 fcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 128 FCLSLMGT---NWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp EES---SS----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEhhhhCC---CcHHHHHHHHheeccCcEEEEEE
Confidence 99998653 34479999999999999999877
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-07 Score=81.71 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=70.7
Q ss_pred eeeEeecccchHHHHHHHhcCCcEE--EEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CCC------CCC
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVD--LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTP------ETG 229 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~--~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~~------~~~ 229 (272)
+|||||||||..+.++ ++.++.++ -.|+++..+.--++.+.... ......-+..|+.+ ++. ..+
T Consensus 28 ~vLEiaSGtGqHa~~F-A~~lP~l~WqPSD~~~~~~~sI~a~~~~~~-----~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYF-AQALPHLTWQPSDPDDNLRPSIRAWIAEAG-----LPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred eEEEEcCCccHHHHHH-HHHCCCCEEcCCCCChHHHhhHHHHHHhcC-----CcccCCCeEeecCCCCCccccccccCCC
Confidence 5999999999999988 68888654 35766666443333322211 00111122233322 121 235
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+||.|++.+++|-.+......+|+...+.|++||.+++--
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 8999999999988788888899999999999999998753
|
The function of this family is unknown. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=79.20 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 227 (272)
...+..|||+|.|||-+|+.+|++.. ..++++|.|+.+.....+.. +.++++.+|..++. ..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----------p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----------PGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----------CCccccccchhhHHHHHhhcC
Confidence 45666899999999999999986653 47899999999999998876 34568888887664 23
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
...||.|+|.--+-.++-....++++.+...|.+||.++
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 458999999988888887778899999999999999876
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=82.36 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=73.7
Q ss_pred eeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCCCCcceee
Q 024100 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGRYDVI 234 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fDlI 234 (272)
.+||||||.|.+...++ ...+ .+.|+|++...+..+.+++... ...|+.++++|+..+ -++++++|-|
T Consensus 20 l~lEIG~G~G~~l~~~A-~~~Pd~n~iGiE~~~~~v~~a~~~~~~~------~l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA-KRNPDINFIGIEIRKKRVAKALRKAEKR------GLKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEET-TTSHHHHHHH-HHSTTSEEEEEES-HHHHHHHHHHHHHH------TTSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred eEEEecCCCCHHHHHHH-HHCCCCCEEEEecchHHHHHHHHHHHhh------cccceEEEEccHHHHHhhcccCCchheE
Confidence 89999999999999884 5544 7899999999999998887543 567999999998773 1345799999
Q ss_pred EechhhhhcChhh------HHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDD------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~------~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.++.==+.-... -..++..+.+.|+|||.|.+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 9876421110000 126999999999999988654
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=90.82 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=70.6
Q ss_pred CCeeeEeecccchHHHHHHHhcC------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 158 HLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
...|||+|||+|-++...+ +.+ .+|.+||-|+.++...++.+.. ..-..+|+++.+|++++..+ .++
T Consensus 187 ~~vVldVGAGrGpL~~~al-~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-----n~w~~~V~vi~~d~r~v~lp-ekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFAL-QAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-----NGWGDKVTVIHGDMREVELP-EKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHH-HTTHHHCCESEEEEEESSTHHHHHHHHHHHH-----TTTTTTEEEEES-TTTSCHS-S-E
T ss_pred ceEEEEeCCCccHHHHHHH-HHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-----cCCCCeEEEEeCcccCCCCC-Cce
Confidence 4689999999999987553 443 5999999998877776655322 12346799999999999876 499
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+|||-+.=.+..++-..+.|....+.|+|||.+|
T Consensus 260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 260 DIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 99998665222233434467888889999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=83.45 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=76.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+.+.+||=||.|.|...+++| ++-.+|++||+++.+++.+++.++.... .-.+++++++.. +.+- ..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvL-kh~~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-~~~~--~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLF-KYDTHVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-LLDL--DIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHH-CcCCeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-hhhc--cCCcCCEEE
Confidence 567899999999999999997 6656999999999999999997754321 234677777752 2111 235899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+-.. .+. .|++.|++.|+|||.++.+
T Consensus 145 vDs~-----~~~--~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 145 CLQE-----PDI--HKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EcCC-----CCh--HHHHHHHHhcCCCcEEEEC
Confidence 8753 233 7999999999999998864
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-07 Score=81.20 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=57.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHH-HHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~-A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||||.+|..++ +. ...|+++|+++.|+.. .+++.... .....|++ ..+++++.++-..||++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~-~~ga~~v~avD~~~~~l~~~l~~~~~v~----~~~~~ni~--~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL-QKGAKEVYGVDVGYNQLAEKLRQDERVK----VLERTNIR--YVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH-HcCCCEEEEEeCCHHHHHHHHhcCCCee----EeecCCcc--cCCHhHcCCCceeeeEE
Confidence 45689999999999999885 55 4689999999988876 33321100 00112222 33344443222478988
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+++.++ .|..+.+.|+| |.++
T Consensus 148 fiS~~~----------~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 148 FISLIS----------ILPELDLLLNP-NDLT 168 (228)
T ss_pred EeehHh----------HHHHHHHHhCc-CeEE
Confidence 887664 25556677777 6544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=67.22 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=69.5
Q ss_pred eeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CCCCC-Ccceee
Q 024100 161 ALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPET-GRYDVI 234 (272)
Q Consensus 161 VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fDlI 234 (272)
++|+|||+|..+ .+ .... ..++++|+++.|++.++..... . ....+.+...+... +++.. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LL-ARLGGRGAYVVGVDLSPEMLALARARAEG-A-----GLGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HH-HHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-----CCCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999976 23 3333 3788899999999996554311 0 01116788888765 55554 389999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
.+...+++.. ....+.++.+.|+|+|.++..+.
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 124 ISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEec
Confidence 4445554443 45899999999999998877654
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.8e-07 Score=72.02 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCCeeeEeecccch-HHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-Ccceee
Q 024100 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~-~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlI 234 (272)
++.++||||||+|. ++..| ++.+.+|+++|.++..++.++++ .++++..|+.+.++.- ..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L-~~~G~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL-KESGFDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH-HHCCCEEEEEECCHHHHHHHHHh-------------CCeEEECcCCCCCHHHHhcCCEE
Confidence 44689999999996 88866 68899999999999999988775 3588899997765432 479999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcc
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIA 260 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~Lk 260 (272)
++... .+|+...+-++.+.+.
T Consensus 82 ysirp-----p~el~~~~~~la~~~~ 102 (134)
T PRK04148 82 YSIRP-----PRDLQPFILELAKKIN 102 (134)
T ss_pred EEeCC-----CHHHHHHHHHHHHHcC
Confidence 98765 3666677777765543
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-06 Score=80.13 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=97.8
Q ss_pred CcchhhhhHHHHHHHHHhccCCCc-cCCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCC
Q 024100 130 VNEVDIKGSEAFLQMLLSDRFPNA-RNNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENH 205 (272)
Q Consensus 130 ~s~~d~~~s~~~L~~ll~~~l~~~-~~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~ 205 (272)
+....+...+..+..++.+.+... .-..+.+||||.||.|+.....+...- ..+.+.|.|+..++..++.++..
T Consensus 107 iGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~-- 184 (311)
T PF12147_consen 107 IGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER-- 184 (311)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--
Confidence 333445555556666655433210 123677999999999999999875543 47889999999999999988642
Q ss_pred CCCCCCCceEEEEeCCCCCC-C--CCCcceeeEechhhhhcChhhHH-HHHHHHHHhcccCcEEEEe
Q 024100 206 MAPDMHKATNFFCVPLQDFT-P--ETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 206 ~~~~~~~~v~~~~~d~~~~~-~--~~~~fDlIvs~~vl~hl~d~~~~-~~l~~~~r~LkpgG~liv~ 268 (272)
+....++|.++|+.+.. . ..-.+++++++..++.|+|.+++ ..|+-+.+++.|||++|-+
T Consensus 185 ---gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 185 ---GLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred ---CCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 23344599999986642 1 12268999999999999997755 5899999999999999854
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.1e-07 Score=78.45 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=71.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--C-CCC-cce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P-ETG-RYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~-~fD 232 (272)
.+.+|||++||+|.++.+++++....|++||.++.+++.+++++...+ ...+++++++|+.++. . ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~-----~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK-----SGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CcccEEEEehhHHHHHHHhhccCCCce
Confidence 456899999999999999864444589999999999999999875431 1236889999985531 1 112 478
Q ss_pred eeEechhhhhcChhhHHHHHHHHH--HhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAK--ENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~--r~LkpgG~liv~ 268 (272)
+|+..=-+.. .....++..+. .+|+++|.+++-
T Consensus 124 vv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 124 VIYLDPPFFN---GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 8887544321 11224444443 468888877654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.5e-07 Score=82.34 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=81.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDl 233 (272)
.+.+||=||.|.|.+++.++ ++. .++++||+++..++.|++.+...... ..+++++++..|..++-- ...+||+
T Consensus 76 ~pk~VLiiGgGdG~tlRevl-kh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVL-KHLPVERITMVEIDPAVIELARKYLPEPSGG--ADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCeEEEECCCccHHHHHHH-hcCCcceEEEEEcCHHHHHHHHHhccCcccc--cCCCceEEEeccHHHHHHhCCCcCCE
Confidence 34699999999999999996 654 69999999999999999998765221 126899999999877632 2238999
Q ss_pred eEechhh--hhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCI--GHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl--~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++-..= ..-+.---..|++.|+++|+++|.++..
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9964331 1100000137999999999999999876
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.8e-07 Score=80.37 Aligned_cols=111 Identities=14% Similarity=0.247 Sum_probs=81.7
Q ss_pred CCCeeeEeecccc----hHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHhc-c------cc------CCC------
Q 024100 157 QHLVALDCGSGIG----RITKNLLIRYF-------NEVDLLEPVSHFLDAARESL-A------PE------NHM------ 206 (272)
Q Consensus 157 ~~~~VLDiGcGtG----~~t~~LLa~~~-------~~v~~vD~S~~mld~A~~~l-~------~~------~~~------ 206 (272)
.+-+|.-.||+|| .++..| .+.+ -++.++|+|..+|+.|+.-. . .. +.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l-~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLL-LEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHH-HHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 4679999999999 333322 3333 36799999999999997521 1 00 000
Q ss_pred ----CCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 207 ----APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 207 ----~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.....|.|...|+.+-.+..+.||+|+|.+|+.+++.+...+++.+++..|+|||++++-
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 01112568888888876553446899999999999999988889999999999999999863
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.3e-07 Score=81.64 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=72.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+.+|||+|||+|..+..+ ... ..+++++|.|+.|++.++..+.... ......+......+.... ...|
T Consensus 32 f~P~~vLD~GsGpGta~wAa-~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-----~~~~~~~~~~~~~~~~~~-~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAA-REVWPSLKEYTCVDRSPEMLELAKRLLRAGP-----NNRNAEWRRVLYRDFLPF-PPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHH-HHHhcCceeeeeecCCHHHHHHHHHHHhccc-----ccccchhhhhhhcccccC-CCCc
Confidence 45679999999999877644 343 4588999999999999988764321 111111111111111111 2459
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|+++++|..+++.....+++++-+.+.+ .+|+.|.
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 99999999999987777888888777766 8888875
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.9e-07 Score=84.17 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=66.9
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-----------
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~----------- 227 (272)
.+|||+|||+|.++..| ++.+..|++||.|++|++.|++++... ...+++|+++|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~l-a~~~~~v~~vE~~~~av~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLAL-AQNFRRVLATEIAKPSVNAAQYNIAAN------NIDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHH-HHhCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 47999999999999966 687789999999999999999987432 234789999998764321
Q ss_pred -----CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 -----~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...||+|+..=- .-.-.. .+++.+.+ |++.++++
T Consensus 272 ~~~~~~~~~d~v~lDPP--R~G~~~--~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPP--RAGLDP--DTCKLVQA---YERILYIS 310 (353)
T ss_pred ccccccCCCCEEEECCC--CCCCcH--HHHHHHHc---CCcEEEEE
Confidence 013798886432 100011 34444433 67777765
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.3e-07 Score=81.87 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=72.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC----C-CCCCCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ----D-FTPETG 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~----~-~~~~~~ 229 (272)
..+..+||+|||+|.++..++... -..|++||.|+..+..|.++..+.+ ....+..+..+++ + .+...+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~-----l~g~i~v~~~~me~d~~~~~~l~~~ 221 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK-----LSGRIEVIHNIMESDASDEHPLLEG 221 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh-----hcCceEEEecccccccccccccccC
Confidence 345579999999999999997554 3377999999999999999886542 2345555544333 2 222347
Q ss_pred cceeeEechhhhhcChhh--------------------------HHHHHHHHHHhcccCcEEEE
Q 024100 230 RYDVIWVQWCIGHLTDDD--------------------------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~--------------------------~~~~l~~~~r~LkpgG~liv 267 (272)
++|+++||-- |+.++| +..++.-..|.|+|||+++.
T Consensus 222 ~~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 222 KIDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ceeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 9999999743 222222 23445555699999998864
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.3e-07 Score=84.29 Aligned_cols=96 Identities=21% Similarity=0.172 Sum_probs=67.3
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--C---------
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--E--------- 227 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~--------- 227 (272)
.+|||++||+|.++..+ ++.+..|++||.|+.|++.|++++... ...+++|+++|+.++.. .
T Consensus 208 ~~vLDl~~G~G~~sl~l-a~~~~~v~~vE~~~~ai~~a~~N~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLAL-ARNFRRVLATEISKPSVAAAQYNIAAN------GIDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHH-HhhCCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHHHhhcccccccc
Confidence 47999999999999966 688889999999999999999987432 23479999999876421 0
Q ss_pred -----CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 -----~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+||+|+..=-= -.-.+ ++++.+.+ |++.++++
T Consensus 281 ~~~~~~~~~D~v~lDPPR--~G~~~--~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR--AGLDD--ETLKLVQA---YERILYIS 319 (362)
T ss_pred cccccCCCCCEEEECCCC--CCCcH--HHHHHHHc---cCCEEEEE
Confidence 1258999874331 11011 34444433 57776664
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=80.23 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=75.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+..|||+|||.|.++. ++++. ..+|.+||.|. |.+.|+..++. +....+|.++.+-++++..+ ++.|+|
T Consensus 176 F~~kiVlDVGaGSGILS~-FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~-----N~~~~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSF-FAAQAGAKKVYAVEASE-MAQYARKLVAS-----NNLADRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred cCCcEEEEecCCccHHHH-HHHHhCcceEEEEehhH-HHHHHHHHHhc-----CCccceEEEccCccccccCc-hhccEE
Confidence 456789999999999999 54565 45899999887 99999987753 22457899999999999876 589999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
++--.=..+-++...+..-..++.|+|.|..+
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 97432111223333333334569999999765
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=78.66 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CCC-CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTP-ETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~~-~~~ 229 (272)
+.++++|||.|.|+|.+|..|+...+ .+|.-.|..+++.+.|++++... +...++++.+.|+.. |+. .+.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-----gl~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-----GLDDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-----TCCTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-----CCCCCceeEecceecccccccccC
Confidence 67899999999999999998853333 48899999999999999998764 235689999999853 421 125
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhc-ccCcEEEE
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENI-ARSGTFLL 267 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~L-kpgG~liv 267 (272)
.+|.|+. -+++|- .++..+.++| +|||.+..
T Consensus 113 ~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 113 DFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp SEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEE
T ss_pred cccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEE
Confidence 7999876 455676 7899999999 89998865
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=77.81 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=77.5
Q ss_pred CeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCCCCccee
Q 024100 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fDl 233 (272)
..+||||||.|.+...+ |+..| .+.|||+....+..|-+++... ...|+.+++.|+..+ -+++++.|-
T Consensus 50 pi~lEIGfG~G~~l~~~-A~~nP~~nfiGiEi~~~~v~~~l~k~~~~------~l~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEM-AKKNPEKNFLGIEIRVPGVAKALKKIKEL------GLKNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHH-HHHCCCCCEEEEEEehHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 48999999999999999 57766 6699999999999998887543 234999999998654 234469999
Q ss_pred eEechhhh-----h----cChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIG-----H----LTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~-----h----l~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+.++.== | ++. ..+++.+.+.|+|||.|...
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~---~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQ---PEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEEECCCCCCCccccccccCC---HHHHHHHHHHccCCCEEEEE
Confidence 99877521 1 112 26999999999999998643
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.1e-07 Score=80.52 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=77.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCC-cc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~-~f 231 (272)
+.+.+||=||.|.|..+..++ ++. .++++||+++.+++.|++.+..... ....++++++..|...+- -..+ +|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell-~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~--~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELL-KHPPVESITVVEIDPEVVELARKYFPEFSE--GLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHT-TSTT-SEEEEEES-HHHHHHHHHHTHHHHT--TGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CCcCceEEEcCCChhhhhhhh-hcCCcceEEEEecChHHHHHHHHhchhhcc--ccCCCceEEEEhhhHHHHHhccCCcc
Confidence 367799999999999999885 554 5899999999999999998754211 023578999999986542 1224 89
Q ss_pred eeeEechhhhhcChhh--HHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDD--FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++-..-..-+... -.+|++.+++.|+|||.++..
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 9999633211111111 137999999999999999864
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=78.02 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCC-ccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fDl 233 (272)
..++..|||||+|.|.+|..|+ +....|++||.++.+++..++.+. ...+++++.+|+..++++.. .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll-~~~~~v~aiEiD~~l~~~L~~~~~--------~~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLL-ERAARVTAIEIDRRLAEVLKERFA--------PYDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHH-hhcCeEEEEEeCHHHHHHHHHhcc--------cccceEEEeCchhcCcchhhcCCCE
Confidence 4557899999999999999885 888899999999999999999873 35689999999999887632 5788
Q ss_pred eEechhhhhcChhhHHHHH
Q 024100 234 IWVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l 252 (272)
|+++--. +++.+-+.+++
T Consensus 99 vVaNlPY-~Isspii~kll 116 (259)
T COG0030 99 VVANLPY-NISSPILFKLL 116 (259)
T ss_pred EEEcCCC-cccHHHHHHHH
Confidence 8887654 55555433333
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=75.90 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCC---CCCCCCceEEEEeCCCCCCCCC--
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTPET-- 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~---~~~~~~~v~~~~~d~~~~~~~~-- 228 (272)
+.+....+|+|||.|+.....+... +..+.|||..+...+.|+......+.. -......+++..+|+.+.+...
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 5678899999999999988664343 556999999999888887644332110 0112457788888886543211
Q ss_pred -CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
...|+|++++.. + ++++...|.+....||+|-+||-..+|
T Consensus 120 ~s~AdvVf~Nn~~-F--~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 120 WSDADVVFVNNTC-F--DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp GHC-SEEEE--TT-T---HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred hcCCCEEEEeccc-c--CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 257999998764 2 566777888888999999999877655
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=74.75 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=80.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEE--EEeCCCCC----
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF--FCVPLQDF---- 224 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-----~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~--~~~d~~~~---- 224 (272)
.+...++|+|||.|+=+..||... ......+|+|..+|+.+.+++.. ...+.+.+ +++|+.+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~------~~~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL------GNFSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh------ccCCCeEEEEEEecHHHHHhhc
Confidence 456689999999999988776433 23589999999999999998851 12355555 78887542
Q ss_pred CC--CCCcceeeE-echhhhhcChhhHHHHHHHHHH-hcccCcEEEEec
Q 024100 225 TP--ETGRYDVIW-VQWCIGHLTDDDFVSFFKRAKE-NIARSGTFLLSH 269 (272)
Q Consensus 225 ~~--~~~~fDlIv-s~~vl~hl~d~~~~~~l~~~~r-~LkpgG~liv~E 269 (272)
+. ......+|+ ...+|++++.++...||+++++ .|+|||.+++.=
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 11 112345555 5579999999999999999999 999999887643
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.4e-07 Score=86.65 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=66.1
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEE--EeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDL--LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~--vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
..+||+|||+|.++..|+.+..-.+.. -|..+..++.|-++- .+. -+-...-+.+++++++||+|-|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG----------vpa-~~~~~~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG----------VPA-MIGVLGSQRLPFPSNAFDMVHC 187 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC----------cch-hhhhhccccccCCccchhhhhc
Confidence 478999999999999997333222111 134444566665431 111 1112234678888899999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.|+......+ .-+|-++.|+|+|||+++.+-
T Consensus 188 src~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 188 SRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred ccccccchhcc-cceeehhhhhhccCceEEecC
Confidence 99876654432 268999999999999998764
|
; GO: 0008168 methyltransferase activity |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-06 Score=74.73 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CC--------cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FN--------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~--------~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~ 223 (272)
..++..+||--||+|.+..+.+ .. .. .+.+.|.++.+++.|++++..++ ....+.+.+.|+.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa-~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-----~~~~i~~~~~D~~~ 99 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAA-LMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-----VEDYIDFIQWDARE 99 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHH-HHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGG
T ss_pred CCCCCEEeecCCCCCHHHHHHH-HHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-----cCCceEEEecchhh
Confidence 4566799999999999998763 32 22 27799999999999999987542 34568999999999
Q ss_pred CCCCCCcceeeEechhhhhc-Ch-----hhHHHHHHHHHHhcccCcEEEEec
Q 024100 224 FTPETGRYDVIWVQWCIGHL-TD-----DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 224 ~~~~~~~fDlIvs~~vl~hl-~d-----~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.++++|+|+++--...- .. .-...+++++.++|++...++..+
T Consensus 100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 98556799999997654432 21 113467888999999965655554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-06 Score=78.50 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=56.8
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE-eCCCCC----CCCCCc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDF----TPETGR 230 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~-~d~~~~----~~~~~~ 230 (272)
...++||||||+|.+..-++++. ..+++++|+++.+++.|++++..- ......+.+.. .+..++ ..+.+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N----p~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN----PGLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----cCCcCcEEEEEccchhhhhhcccccCCc
Confidence 45799999999998888564333 458999999999999999998531 01234577654 333222 112458
Q ss_pred ceeeEechhhh
Q 024100 231 YDVIWVQWCIG 241 (272)
Q Consensus 231 fDlIvs~~vl~ 241 (272)
||+|+|+=-++
T Consensus 190 fDlivcNPPf~ 200 (321)
T PRK11727 190 FDATLCNPPFH 200 (321)
T ss_pred eEEEEeCCCCc
Confidence 99999998763
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4e-07 Score=79.14 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
..+.++||+|+|.|-+|..+ ++.|.+|.++|.|..|++..+.+- ... ....++...+-+||+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m-~p~feevyATElS~tMr~rL~kk~----------ynV-----l~~~ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRM-APTFEEVYATELSWTMRDRLKKKN----------YNV-----LTEIEWLQTDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhh-cchHHHHHHHHhhHHHHHHHhhcC----------Cce-----eeehhhhhcCceeehHH
Confidence 45679999999999999988 799999999999999999886541 111 12222222234799999
Q ss_pred echhhhhcChhhHHHHHHHHHHhccc-CcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIAR-SGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~Lkp-gG~liv~ 268 (272)
|-++|.--.++- ++|+.+..+|+| +|.+|+.
T Consensus 175 clNlLDRc~~p~--kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLNLLDRCFDPF--KLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhhcChH--HHHHHHHHHhccCCCcEEEE
Confidence 999987665666 999999999999 8988764
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-06 Score=76.32 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=65.7
Q ss_pred ccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 153 ~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.++.++..|||||.|||.+|..|| +.+..|.++|.++.|+....++.... ......+++.+|+...+.+ .||
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv~gt-----p~~~kLqV~~gD~lK~d~P--~fd 125 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRVQGT-----PKSGKLQVLHGDFLKTDLP--RFD 125 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHhcCC-----CccceeeEEecccccCCCc--ccc
Confidence 357889999999999999999997 88899999999999999999988542 2236789999999877644 699
Q ss_pred eeEech
Q 024100 233 VIWVQW 238 (272)
Q Consensus 233 lIvs~~ 238 (272)
.+|++.
T Consensus 126 ~cVsNl 131 (315)
T KOG0820|consen 126 GCVSNL 131 (315)
T ss_pred eeeccC
Confidence 999754
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.3e-07 Score=83.49 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=86.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+...++|+|||.|..+..+..-...++++++.++--+..+....... .....-.+...|+...+++++.||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~-----~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKA-----YLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHH-----HhhhhcceehhhhhcCCCCccccCcE
Confidence 3455689999999999999774334579999998887777666544221 12234455778888888888999999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
.+..+..|.++.. .++++++++++|||++++.|-
T Consensus 183 ~~ld~~~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 183 RFLEVVCHAPDLE--KVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEEeecccCCcHH--HHHHHHhcccCCCceEEeHHH
Confidence 9999999998887 999999999999999998763
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-06 Score=81.48 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=74.2
Q ss_pred CeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
.+|||++||+|..+..++.... ..|+++|.++.+++.+++++..- ...++.++++|+..+....+.||+|++.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N------~~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN------GLENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 4899999999999998853332 38999999999999999987431 2345678999987653213579999986
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
- . ..+. .++....+.+++||.+.++
T Consensus 133 P-~---Gs~~--~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 P-F---GSPA--PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-C---CCcH--HHHHHHHHHhcCCCEEEEE
Confidence 3 2 2233 6888877888999999875
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-06 Score=74.97 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=73.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD 232 (272)
++.++||+-||+|.++.+.|++....|+.||.++..+...++++...+ ....+.+++.|...+- ....+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~-----~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG-----LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC-----CCcceeeeccCHHHHHHhhcccCCCce
Confidence 567999999999999999987778899999999999999999986542 2235788888864321 1246899
Q ss_pred eeEechhhhhcChhhHHHHHHHHH--HhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAK--ENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~--r~LkpgG~liv~ 268 (272)
+|++.--... ... ..+++..+. .+|+++|.+++-
T Consensus 117 iIflDPPY~~-~~~-~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 117 IIFLDPPYAK-GLY-YEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp EEEE--STTS-CHH-HHHHHHHHHHTTSEEEEEEEEEE
T ss_pred EEEECCCccc-chH-HHHHHHHHHHCCCCCCCEEEEEE
Confidence 9998755422 111 246777776 789999988764
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-06 Score=73.96 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=76.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhc----CCcEEEEeCCHHHHHHHHHhccccCC----CCCCCCCceEEEEeCCCCCCCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDFTPE 227 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~----~~~v~~vD~S~~mld~A~~~l~~~~~----~~~~~~~~v~~~~~d~~~~~~~ 227 (272)
.++.++||+|.|+|++|.-+ +.. +..+.|||.-++.++.+++++...-. ...-....+.++.+|......+
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~-~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACF-ARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred ccCcceeecCCCccHHHHHH-HHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 46779999999999999855 443 44559999999999999998854211 0011235788999998877666
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..+||.|.+... .. +.-+++...|+|||.+++
T Consensus 160 ~a~YDaIhvGAa------a~--~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGAA------AS--ELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEccC------cc--ccHHHHHHhhccCCeEEE
Confidence 689999998744 22 466777888999998765
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.8e-06 Score=76.28 Aligned_cols=107 Identities=15% Similarity=0.055 Sum_probs=82.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fDl 233 (272)
..++..|||==||||.+..+. .-.+..+.|.|++..|+.-|+.|+... ......++.. |+...++.++++|.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEa-gl~G~~viG~Did~~mv~gak~Nl~~y------~i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEA-GLMGARVIGSDIDERMVRGAKINLEYY------GIEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhh-hhcCceEeecchHHHHHhhhhhhhhhh------CcCceeEEEecccccCCCCCCccce
Confidence 456779999999999999977 677999999999999999999998643 1234445555 88888887778999
Q ss_pred eEechhhhhc-----C--hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHL-----T--DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl-----~--d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++---..-- . +.-..++|+.+.++|++||+++..
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 9963221111 1 333568999999999999988754
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.8e-06 Score=73.61 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=83.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCC-----------------------C------
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-----------------------M------ 206 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~-----------------------~------ 206 (272)
+...+||--|||.||++.++ +..+..+.+.|.|--|+=..+=.+..... +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Ei-a~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEI-AKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHH-hhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34569999999999999999 57788999999999997665543322000 0
Q ss_pred -----CCCCCCceEEEEeCCCCCCCCC---CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 207 -----APDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 207 -----~~~~~~~v~~~~~d~~~~~~~~---~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
......+..+..+|+.++-.++ ++||+|+..+-|.- -+.+...|..+.++|||||+.|-.=.|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPL 204 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPL 204 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCc
Confidence 0012357888899998875444 69999999866533 245779999999999999988755444
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-06 Score=73.78 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=69.0
Q ss_pred CCCCeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|+|+.||.|.++..+ ++ ....|.++|.+|..++..++++.. +.....+..+++|..++.. .+.||-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~-ak~~~~~~V~A~d~Np~a~~~L~~Ni~l-----Nkv~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPI-AKHGKAKRVYAVDLNPDAVEYLKENIRL-----NKVENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHH-HHHT-SSEEEEEES-HHHHHHHHHHHHH-----TT-TTTEEEEES-GGG----TT-EEE
T ss_pred CcceEEEEccCCccHHHHHH-hhhcCccEEEEecCCHHHHHHHHHHHHH-----cCCCCeEEEEcCCHHHhcC-ccccCE
Confidence 45679999999999999988 46 567899999999999999998753 2234568999999988865 579999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
|+++..- ... .||..+..++++||.+
T Consensus 173 vim~lp~----~~~--~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 173 VIMNLPE----SSL--EFLDAALSLLKEGGII 198 (200)
T ss_dssp EEE--TS----SGG--GGHHHHHHHEEEEEEE
T ss_pred EEECChH----HHH--HHHHHHHHHhcCCcEE
Confidence 9987651 122 5888899999999976
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-05 Score=67.71 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=68.5
Q ss_pred eeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+++|+|+|.|.-+..| +=.++ +++++|.+..=+...+...... ...|+++++..+++ .....+||+|++.
T Consensus 51 ~~lDiGSGaGfPGipL-aI~~p~~~~~LvEs~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~-~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPL-AIARPDLQVTLVESVGKKVAFLKEVVREL------GLSNVEVINGRAEE-PEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHH-HHH-TTSEEEEEESSHHHHHHHHHHHHHH------T-SSEEEEES-HHH-TTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHH-HHhCCCCcEEEEeCCchHHHHHHHHHHHh------CCCCEEEEEeeecc-cccCCCccEEEee
Confidence 7999999999988876 44444 6899999988555444433222 34689999999988 2234699999998
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.+- .+..++.-+...|++||.++.
T Consensus 123 Av~------~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 123 AVA------PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp SSS------SHHHHHHHHGGGEEEEEEEEE
T ss_pred hhc------CHHHHHHHHHHhcCCCCEEEE
Confidence 873 244788889999999998764
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-06 Score=78.70 Aligned_cols=114 Identities=14% Similarity=0.238 Sum_probs=72.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCC---C----------CCC---------C-CC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH---M----------APD---------M-HK 212 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~---~----------~~~---------~-~~ 212 (272)
.++.++||||||+--.-.--+.+.+.++++.|.++.-++..++=+..... + ... . ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 34668999999985443322235688999999999888766554332200 0 000 0 11
Q ss_pred ceEEEEeCCCCCCC-CC-----CcceeeEechhhhhcCh--hhHHHHHHHHHHhcccCcEEEEec
Q 024100 213 ATNFFCVPLQDFTP-ET-----GRYDVIWVQWCIGHLTD--DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 213 ~v~~~~~d~~~~~~-~~-----~~fDlIvs~~vl~hl~d--~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.-.++.+|+...++ .+ .+||+|++.++++-... +++..+++++.++|||||.+|...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 23467788866432 11 25999999999998853 578899999999999999998653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-06 Score=71.12 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
-.+.+++|+|||.|-++....-.....|.|+|++++.++++.++...+ .-++++.++|+.+..+..+.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEE
Confidence 356799999999999996552122458899999999999999987654 3467999999999887778999999
Q ss_pred echhhh
Q 024100 236 VQWCIG 241 (272)
Q Consensus 236 s~~vl~ 241 (272)
.+--|.
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 876553
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-05 Score=76.00 Aligned_cols=106 Identities=11% Similarity=0.082 Sum_probs=77.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 231 (272)
..++.+|||++||+|.=|..+++.. ...++++|+++.-+...++++.+. ...++.+.+.|...+. ..++.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~------G~~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC------GVSNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCchhhhhhhchhhc
Confidence 3567899999999999999885443 247899999999999999998754 3467888888877653 223579
Q ss_pred eeeE----ech--hhhh-------cChhh-------HHHHHHHHHHhcccCcEEE
Q 024100 232 DVIW----VQW--CIGH-------LTDDD-------FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 232 DlIv----s~~--vl~h-------l~d~~-------~~~~l~~~~r~LkpgG~li 266 (272)
|.|+ |+. ++.. .+..+ ..++|....+.|+|||.+|
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV 239 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV 239 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999 442 2222 11111 1468888899999999885
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.6e-06 Score=74.66 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=81.4
Q ss_pred hhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCC
Q 024100 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (272)
Q Consensus 133 ~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~ 211 (272)
.|....+.++.... ++.+|||+=|=||.++...+ ..+ .+|+.||.|..+++.+++++..- .-..
T Consensus 109 lDqR~nR~~v~~~~----------~gkrvLnlFsYTGgfsv~Aa-~gGA~~v~~VD~S~~al~~a~~N~~lN----g~~~ 173 (286)
T PF10672_consen 109 LDQRENRKWVRKYA----------KGKRVLNLFSYTGGFSVAAA-AGGAKEVVSVDSSKRALEWAKENAALN----GLDL 173 (286)
T ss_dssp GGGHHHHHHHHHHC----------TTCEEEEET-TTTHHHHHHH-HTTESEEEEEES-HHHHHHHHHHHHHT----T-CC
T ss_pred HHHHhhHHHHHHHc----------CCCceEEecCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCc
Confidence 34555666666542 35699999999999999774 544 47999999999999999997531 1123
Q ss_pred CceEEEEeCCCCCCC---CCCcceeeEec---hhhhhc-ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 212 KATNFFCVPLQDFTP---ETGRYDVIWVQ---WCIGHL-TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 212 ~~v~~~~~d~~~~~~---~~~~fDlIvs~---~vl~hl-~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..++|++.|+.++-- ..++||+||+- +.=... -..++.+++..+.++|+|||.++..
T Consensus 174 ~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 174 DRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp TCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 578999999865321 23589999952 110000 0245678999999999999998754
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=75.75 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=79.7
Q ss_pred CCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcce
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD 232 (272)
+.+|||+=|=||.++... +..+. +|+.||.|...|+.|++++..- .-....+.|+++|+.++- -...+||
T Consensus 218 GkrvLNlFsYTGgfSv~A-a~gGA~~vt~VD~S~~al~~a~~N~~LN----g~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHA-ALGGASEVTSVDLSKRALEWARENAELN----GLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred CCeEEEecccCcHHHHHH-HhcCCCceEEEeccHHHHHHHHHHHHhc----CCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 669999999999999977 46666 9999999999999999998531 112346789999986652 1223899
Q ss_pred eeEechh-----hhh-c-ChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWC-----IGH-L-TDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~v-----l~h-l-~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++--- =.. + -..++..++..+.++|+|||.++.+-
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9995211 000 0 12456789999999999999998753
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=79.63 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=76.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
....+||||||.|.++..+ |..++ .+.|+|++...+..+..+... ....|+.+++.|+..+ .++++++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~-A~~~p~~~~iGiE~~~~~~~~~~~~~~~------~~l~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQ-AKMNPDALFIGVEVYLNGVANVLKLAGE------QNITNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHH-HHhCCCCCEEEEEeeHHHHHHHHHHHHH------cCCCeEEEEcCCHHHHHHhcCccccc
Confidence 3568999999999999988 57665 779999999988888776532 2356888888887432 23557899
Q ss_pred eeEechhhhhcChh--h----HHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDD--D----FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~--~----~~~~l~~~~r~LkpgG~liv~ 268 (272)
.|++++.==+.-.. . -..|++.+.+.|+|||.+.+.
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 99987642111000 0 126999999999999988654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.3e-06 Score=70.04 Aligned_cols=101 Identities=17% Similarity=0.101 Sum_probs=83.0
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
+.+.|+|+|+|.++. ++++...+|.+||-+|.-.+.|.+++.- ....+++++.+|+.+.+++ ..|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v------~g~~n~evv~gDA~~y~fe--~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHV------PGDVNWEVVVGDARDYDFE--NADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCC------CCCcceEEEeccccccccc--ccceeHHHH
Confidence 589999999999999 6578888999999999999999999632 2457899999999999874 699999876
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.=--+-++..+.+++.+.+.|+-++.+|=.
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 433344566778999999999999888644
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-06 Score=71.60 Aligned_cols=72 Identities=19% Similarity=0.360 Sum_probs=53.1
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--CC-cceeeEe
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TG-RYDVIWV 236 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~-~fDlIvs 236 (272)
.|+|+.||.|..+..+ ++.+.+|++||.++..++.|+.+.... +...++.|+++|+.+.... .. .||+|++
T Consensus 2 ~vlD~fcG~GGNtIqF-A~~~~~Viaidid~~~~~~a~hNa~vY-----Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQF-ARTFDRVIAIDIDPERLECAKHNAEVY-----GVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHH-HHTT-EEEEEES-HHHHHHHHHHHHHT-----T-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHH-HHhCCeEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6999999999999999 699999999999999999999998654 2356899999999765321 11 2899995
Q ss_pred c
Q 024100 237 Q 237 (272)
Q Consensus 237 ~ 237 (272)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 3
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.5e-06 Score=71.08 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=64.7
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---CCCcceee
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDVI 234 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fDlI 234 (272)
..++|||||=.......- ...+ +|+.||.++. .-.+.+.|+.+.|. +.++||+|
T Consensus 52 ~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns~---------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST-SGWF-DVTRIDLNSQ---------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred cceEEeecccCCCCcccc-cCce-eeEEeecCCC---------------------CCCceeeccccCCCCCCcccceeEE
Confidence 469999998755444322 2334 4999986551 22456777776654 24699999
Q ss_pred EechhhhhcChhh-HHHHHHHHHHhcccCcE-----EEEe
Q 024100 235 WVQWCIGHLTDDD-FVSFFKRAKENIARSGT-----FLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~-----liv~ 268 (272)
+++.||.+++++. .-++++++.+.|+|+|. +|++
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 9999999999864 55899999999999999 7654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=4e-06 Score=77.18 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CCC--
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETG-- 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~-- 229 (272)
.+++.++|++||.|..|..++.... ..|+++|.++.|++.|++++.. ..++.++++++.++.. +.+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCCC
Confidence 4567999999999999998864432 5899999999999999988731 3579999999987631 112
Q ss_pred cceeeEec--hhhhhcChhh
Q 024100 230 RYDVIWVQ--WCIGHLTDDD 247 (272)
Q Consensus 230 ~fDlIvs~--~vl~hl~d~~ 247 (272)
++|.|++. .+.+++.+++
T Consensus 90 ~vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 90 KVDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred ccCEEEECCCccccccCCCc
Confidence 79999964 3344555554
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.9e-05 Score=69.31 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---Ccc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~f 231 (272)
..+...|||+|+|+|.+|..|+ +.+.+++++|.++.+++..++++. ..++++++.+|+..++... +..
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~-~~~~~v~~vE~d~~~~~~L~~~~~--------~~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELL-KRGKRVIAVEIDPDLAKHLKERFA--------SNPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHH-HHSSEEEEEESSHHHHHHHHHHCT--------TCSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCEEEEeCCCCccchhhHh-cccCcceeecCcHhHHHHHHHHhh--------hcccceeeecchhccccHHhhcCCc
Confidence 3467899999999999999995 667999999999999999999874 3568999999999887543 356
Q ss_pred eeeEechhhhhcC
Q 024100 232 DVIWVQWCIGHLT 244 (272)
Q Consensus 232 DlIvs~~vl~hl~ 244 (272)
..|+++-.. +++
T Consensus 99 ~~vv~NlPy-~is 110 (262)
T PF00398_consen 99 LLVVGNLPY-NIS 110 (262)
T ss_dssp EEEEEEETG-TGH
T ss_pred eEEEEEecc-cch
Confidence 678877664 443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.7e-05 Score=74.77 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=45.6
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~ 224 (272)
++||+-||+|.++..| ++.+.+|.|||.++.+++.|++++.. ....|++|++++.+++
T Consensus 199 ~vlDlycG~G~fsl~l-a~~~~~V~gvE~~~~av~~A~~Na~~------N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPL-AKKAKKVIGVEIVEEAVEDARENAKL------NGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHH-HCCSSEEEEEES-HHHHHHHHHHHHH------TT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHH-HhhCCeEEEeeCCHHHHHHHHHHHHH------cCCCcceEEEeeccch
Confidence 8999999999999977 79999999999999999999998753 2346899999877654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.2e-06 Score=74.77 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=73.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCce-EEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT-NFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fDlI 234 (272)
.....++|+|||.|..+. . .-...+.+.|.+...+..|++. +. ....+|+...++.+.+||.+
T Consensus 44 ~~gsv~~d~gCGngky~~-~--~p~~~~ig~D~c~~l~~~ak~~-------------~~~~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG-V--NPLCLIIGCDLCTGLLGGAKRS-------------GGDNVCRADALKLPFREESFDAA 107 (293)
T ss_pred CCcceeeecccCCcccCc-C--CCcceeeecchhhhhccccccC-------------CCceeehhhhhcCCCCCCccccc
Confidence 346789999999998665 2 2122567777777777776542 22 56678888888888899999
Q ss_pred EechhhhhcChhh-HHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDD-FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~liv 267 (272)
++..++||+.... ...+++++.+.|+|||...+
T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 9999999997654 45899999999999997543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1e-05 Score=71.59 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=77.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~f 231 (272)
..+..+|||...|-|+.+...+ +.+. .|.-||-++..++.|.-+-=. ..-....+.++.+|..++ ++++.+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~-~rGA~~VitvEkdp~VLeLa~lNPwS----r~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEAL-ERGAIHVITVEKDPNVLELAKLNPWS----RELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred cccCCEeeeeccCccHHHHHHH-HcCCcEEEEEeeCCCeEEeeccCCCC----ccccccccEEecccHHHHHhcCCcccc
Confidence 4567899999999999999886 6666 999999999999988755311 111234689999998665 4567799
Q ss_pred eeeEechh-hhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWC-IGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~v-l~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|+-.-- |-+.+.-=-++|.++++|+|+|||.+|.
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 99993210 1111111123799999999999999874
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.9e-05 Score=65.35 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=78.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCC-Ccce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPET-GRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~~fD 232 (272)
-.+.++||+=+|+|.++.+.+++....++.||.+...+...++++...+ ...+..++..|...+ .... +.||
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~-----~~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG-----LEGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CccceEEEeecHHHHHHhcCCCCccc
Confidence 3567999999999999999988888899999999999999999986542 235778888887754 1122 2599
Q ss_pred eeEechhhhh-cChhhHHHHHHH--HHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGH-LTDDDFVSFFKR--AKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~h-l~d~~~~~~l~~--~~r~LkpgG~liv~E 269 (272)
+|++---++. +-+.+ ..+.. -..+|+|+|.+++-.
T Consensus 117 lVflDPPy~~~l~~~~--~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 117 LVFLDPPYAKGLLDKE--LALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred EEEeCCCCccchhhHH--HHHHHHHhcCCcCCCcEEEEEe
Confidence 9998766531 11222 33333 346799999988643
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.2e-05 Score=68.14 Aligned_cols=126 Identities=22% Similarity=0.247 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHhccCCCccCCCCCeeeEeeccc--chHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCC
Q 024100 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (272)
Q Consensus 135 ~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGt--G~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~ 210 (272)
....+.||.+...-.....|+ .-.||||||. -..+.+++.+. -.+|..||..+-.+..++..+... .
T Consensus 49 ar~nR~Fl~RaVr~la~~~GI---rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------~ 119 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGI---RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------P 119 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------T
T ss_pred HHHHHHHHHHHHHHHHHhcCc---ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC------C
Confidence 456677887776643332122 3599999993 34455564333 448899999999999999988531 1
Q ss_pred CCceEEEEeCCCCCCC--C----CCcce-----eeEechhhhhcCh-hhHHHHHHHHHHhcccCcEEEEec
Q 024100 211 HKATNFFCVPLQDFTP--E----TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 211 ~~~v~~~~~d~~~~~~--~----~~~fD-----lIvs~~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.....++++|+.+..- . .+-+| .+++..+|||++| ++...+++.+++.|.||.+++++.
T Consensus 120 ~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 120 RGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp TSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 1237899999965320 0 02344 4778899999988 677899999999999999998763
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=64.29 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=80.0
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHH--HhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LL--a~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
.|+..++. ...+.++||+|.=||..+..++ -+...+|+.+|.++...+.+.+..+.+ +....++++
T Consensus 63 ~fl~~li~-------~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-----gv~~KI~~i 130 (237)
T KOG1663|consen 63 QFLQMLIR-------LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-----GVDHKITFI 130 (237)
T ss_pred HHHHHHHH-------HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-----cccceeeee
Confidence 45666665 2346699999988887776552 223669999999999999998876543 356789999
Q ss_pred EeCCCCC-C-----CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 218 CVPLQDF-T-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 218 ~~d~~~~-~-----~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++..+. + .+.++||++|.-.- .+.....+.++.++|++||.|++-
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHHHhhcccccEEEEe
Confidence 9987542 1 13469999986422 122347888899999999988753
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00021 Score=62.91 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCeeeEeecccchHHHHHH-HhcCCcEEEEeCCHH---HHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCc-ce
Q 024100 158 HLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR-YD 232 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LL-a~~~~~v~~vD~S~~---mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD 232 (272)
+.+++|||+|.|.=+..|+ ..-..+|+++|.... +++.+...+ ...|++++++.++++.... . ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---------~L~nv~i~~~RaE~~~~~~-~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---------GLENVEIVHGRAEEFGQEK-KQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---------CCCCeEEehhhHhhccccc-ccCc
Confidence 5799999999999888763 122336899998766 555555555 4578999999999997543 4 99
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+|.|..+- .+..++.-|...+++||.++
T Consensus 138 ~vtsRAva------~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 138 VVTSRAVA------SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred EEEeehcc------chHHHHHHHHHhcccCCcch
Confidence 99988763 34467777888889988753
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.3e-05 Score=73.26 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=63.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---Ccc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~f 231 (272)
..+..++||+=||.|.++..| ++.+.+|++||.++++++.|+++.+.- ...|++|..++.+++.... ..+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~l-A~~~~~V~gvEi~~~aV~~A~~NA~~n------~i~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPL-AKRVKKVHGVEISPEAVEAAQENAAAN------GIDNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hcCCCEEEEeccCCChhhhhh-cccCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEeCCHHHHhhhccccCCC
Confidence 345678999999999999988 799999999999999999999998542 3456999999999886543 378
Q ss_pred eeeEe
Q 024100 232 DVIWV 236 (272)
Q Consensus 232 DlIvs 236 (272)
|+|+.
T Consensus 364 d~Vvv 368 (432)
T COG2265 364 DVVVV 368 (432)
T ss_pred CEEEE
Confidence 99985
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=60.22 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=65.0
Q ss_pred CCCCeeeEeecccchHHHHHHH-----hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa-----~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 230 (272)
.+...|+|+|||-|+++..|.. ....+|.+||.++.+++.+.++....+. ....+..+...++.+... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cCC
Confidence 4667999999999999997754 3456999999999999999887654321 122466777777665533 357
Q ss_pred ceeeEechhhhhcChhhHHHH
Q 024100 231 YDVIWVQWCIGHLTDDDFVSF 251 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~ 251 (272)
.++++.-++-.-+++.-+..|
T Consensus 100 ~~~~vgLHaCG~Ls~~~l~~~ 120 (141)
T PF13679_consen 100 PDILVGLHACGDLSDRALRLF 120 (141)
T ss_pred CeEEEEeecccchHHHHHHHH
Confidence 888887777666655543333
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=6e-05 Score=71.67 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=76.9
Q ss_pred CeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-CCcceeeE
Q 024100 159 LVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fDlIv 235 (272)
.+|||+.||+|..+..++.+ ....|+++|.++..++.+++++..- ...++.+++.|+..+... ..+||+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N------~~~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN------SVENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEchhHHHHHHHhCCCCCEEE
Confidence 48999999999999999655 2468999999999999999998431 223678999998766321 24799998
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..- ++ .+. .++..+.+.+++||.+.++
T Consensus 120 lDP-fG---s~~--~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 120 IDP-FG---TPA--PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred eCC-CC---CcH--HHHHHHHHhcccCCEEEEE
Confidence 865 32 244 7999999999999999876
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=62.15 Aligned_cols=103 Identities=15% Similarity=0.053 Sum_probs=69.1
Q ss_pred CCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+..+||||||+|.++..|.....+ ...++|+++..++...+-.. .+..+++.++.|+.+--- +++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~-------~n~~~~~~V~tdl~~~l~-~~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR-------CNRVHIDVVRTDLLSGLR-NESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH-------hcCCccceeehhHHhhhc-cCCccEEE
Confidence 568999999999999967433444 35778999999988776542 134467888888865432 26888887
Q ss_pred echhhh---------------hc--Ch--hhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIG---------------HL--TD--DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~---------------hl--~d--~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+--.- +. .+ .-..+++..+-..|.|.|.++..
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 543210 00 00 11236777788899999987653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00024 Score=72.73 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=73.9
Q ss_pred CCCeeeEeecccchHHHHHHHh-------------------------------------------cCCcEEEEeCCHHHH
Q 024100 157 QHLVALDCGSGIGRITKNLLIR-------------------------------------------YFNEVDLLEPVSHFL 193 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~-------------------------------------------~~~~v~~vD~S~~ml 193 (272)
+...++|-+||+|.+..+.+.. ....++|+|.++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4578999999999999876421 012589999999999
Q ss_pred HHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC--CcceeeEechhhhh-cC-hhhHHHHHHHHHHhcc---cCcEEE
Q 024100 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDVIWVQWCIGH-LT-DDDFVSFFKRAKENIA---RSGTFL 266 (272)
Q Consensus 194 d~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fDlIvs~~vl~h-l~-d~~~~~~l~~~~r~Lk---pgG~li 266 (272)
+.|++++... +....+.|.++|+.+++.+. ++||+|+++--... +. ..++..+.+++-+.++ +|+.++
T Consensus 270 ~~A~~N~~~~-----g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 270 QAARKNARRA-----GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHHc-----CCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9999998653 22346899999998875432 47999999855322 22 2445556555555554 787654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00019 Score=67.20 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=63.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.++||+||++|.+|..|+ +.+..|++||..+ |-.. +. ..++|..+..|...+.+..+.+|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~-~rG~~V~AVD~g~-l~~~----L~--------~~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLV-RRGMFVTAVDNGP-MAQS----LM--------DTGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHH-HcCCEEEEEechh-cCHh----hh--------CCCCEEEEeccCcccCCCCCCCCEE
Confidence 3577899999999999999885 7777999999554 3222 21 3567888888887776545789999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARS 262 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~Lkpg 262 (272)
+|-.+- .|. .+.+-+.++|..|
T Consensus 275 VcDmve----~P~--rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE----KPA--RVAELMAQWLVNG 296 (357)
T ss_pred EEeccc----CHH--HHHHHHHHHHhcC
Confidence 987763 244 5666666666555
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.8e-05 Score=67.15 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=53.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC---------CCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL---------QDF 224 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~---------~~~ 224 (272)
.+.+|||+||++|.++..++ +.. ..|.++|+.+. .. ..++.++++|+ .+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~-~~~~~~~~v~avDl~~~------~~-----------~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLL-QRGGPAGRVVAVDLGPM------DP-----------LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHH-TSTTTEEEEEEEESSST------GS------------TTEEBTTGGGEEEEHSHHGGGS
T ss_pred cccEEEEcCCcccceeeeee-ecccccceEEEEecccc------cc-----------ccceeeeecccchhhHHHhhhhh
Confidence 45799999999999999875 655 79999997764 10 11222223332 121
Q ss_pred CC-CCCcceeeEechhhhhcC----h-----hhHHHHHHHHHHhcccCcEEEEe
Q 024100 225 TP-ETGRYDVIWVQWCIGHLT----D-----DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 225 ~~-~~~~fDlIvs~~vl~hl~----d-----~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.. ..++||+|+|-.+..--. | .-....+.-+.+.|+|||.+++.
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 11 125899999866221110 1 11234555556789999977653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00018 Score=71.18 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=50.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~---------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--- 224 (272)
...+|||.|||+|.+...++.... .++.++|+++..+..++.++.... ...+++.+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~------~~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA------LLEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC------CCCceeeeccccccccc
Confidence 456899999999999998864321 467999999999999998875431 11234444443221
Q ss_pred --CCCCCcceeeEec
Q 024100 225 --TPETGRYDVIWVQ 237 (272)
Q Consensus 225 --~~~~~~fDlIvs~ 237 (272)
....+.||+|+.+
T Consensus 105 ~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 105 NIESYLDLFDIVITN 119 (524)
T ss_pred ccccccCcccEEEeC
Confidence 1112479999986
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=65.09 Aligned_cols=107 Identities=15% Similarity=0.032 Sum_probs=66.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHh--------cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~--------~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~ 226 (272)
..+..+|+|-.||+|.+...+... ...++.|+|.++.++..|+-++... .....+..+.+.|...-+.
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~----~~~~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH----GIDNSNINIIQGDSLENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT----THHCBGCEEEES-TTTSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh----ccccccccccccccccccc
Confidence 345668999999999998877531 3458899999999999988765221 0112334577888654332
Q ss_pred C--CCcceeeEechhhhhc--Ch-----------------hhHHHHHHHHHHhcccCcEE
Q 024100 227 E--TGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 227 ~--~~~fDlIvs~~vl~hl--~d-----------------~~~~~~l~~~~r~LkpgG~l 265 (272)
. ...||+|+++--+.-. .+ ..-..|+..+.+.|++||.+
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 2 3689999986433222 00 01125889999999999975
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=66.80 Aligned_cols=177 Identities=15% Similarity=0.112 Sum_probs=115.0
Q ss_pred HHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhccc-cc---chhhhhHHHHHHHhhhhcchhhhhcccc
Q 024100 50 LRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED-GE---QQEKKTQWYREGISYWEGVEASVDGVLG 125 (272)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~-~~---~~~~~~~~y~~~~~YW~~~~~~~~~~lg 125 (272)
-+..+++|+-++. +.-..|..++....|. |-..+ +.--+|+. +. +.++-..|.+-++-||+..-.+
T Consensus 108 ~~~~i~~ai~~~~-~~vk~V~~k~~~v~G~-~R~~~--le~laGe~~teTihrE~G~~f~vD~~Kv~Fsprl~~------ 177 (341)
T COG2520 108 YKREIAEAILRVH-GKVKAVLLKEGPVAGE-FRVPR--LEVLAGERRTETIHRENGCRFKVDVAKVYFSPRLST------ 177 (341)
T ss_pred HHHHHHHHHHhhc-cCeeEEEEecCccCCe-Eeccc--eEEeecCCCceEEEecCCEEEEEchHHeEECCCchH------
Confidence 5688999999773 3246777777766662 22222 22223332 11 2233334445555666432111
Q ss_pred CCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccC
Q 024100 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPEN 204 (272)
Q Consensus 126 gy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~ 204 (272)
. +.-+..+ ..++.+|+|.=||.|.+|..+ +..+.. |.++|++|..++..++++..
T Consensus 178 -----------E-R~Rva~~---------v~~GE~V~DmFAGVGpfsi~~-Ak~g~~~V~A~diNP~A~~~L~eNi~L-- 233 (341)
T COG2520 178 -----------E-RARVAEL---------VKEGETVLDMFAGVGPFSIPI-AKKGRPKVYAIDINPDAVEYLKENIRL-- 233 (341)
T ss_pred -----------H-HHHHHhh---------hcCCCEEEEccCCcccchhhh-hhcCCceEEEEecCHHHHHHHHHHHHh--
Confidence 1 1112222 234679999999999999988 566554 99999999999999999843
Q ss_pred CCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 205 HMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 205 ~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.....+..+++|..++.+..+.+|-|++++.- +.. +++....+.+++||.+..-+
T Consensus 234 ---N~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~----~a~--~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 234 ---NKVEGRVEPILGDAREVAPELGVADRIIMGLPK----SAH--EFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ---cCccceeeEEeccHHHhhhccccCCEEEeCCCC----cch--hhHHHHHHHhhcCcEEEEEe
Confidence 223344889999999987654789999998763 223 68888888899999885443
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=68.17 Aligned_cols=101 Identities=15% Similarity=0.276 Sum_probs=83.2
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechh
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~v 239 (272)
++|-+|||.-.++..+....+..++-+|.|+..++.....-. ....-..+...|+....+++++||+|+.-..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-------~~~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-------KERPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-------cCCcceEEEEecchhccCCCcceeEEEecCc
Confidence 899999999999999877779999999999999988877642 1345788999999998889999999999888
Q ss_pred hhhcChh-h-------HHHHHHHHHHhcccCcEEEE
Q 024100 240 IGHLTDD-D-------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 240 l~hl~d~-~-------~~~~l~~~~r~LkpgG~liv 267 (272)
++++-.+ + .-..+.++.++|++||+++.
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 8887322 2 12457888999999998754
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00037 Score=65.53 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=79.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHh--ccccCCCCCCCCCceEEEEeCCCCCC-CCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~--l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 231 (272)
...+||=+|.|.|--.++++ ++ +.+++.||.+|+|++.++.+ +...+ ..+-.+++++++..|..+|- ...+.|
T Consensus 289 ~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N-~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALN-QGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhc-cCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44589999999999999996 43 66999999999999999833 22211 11234678999999987763 233589
Q ss_pred eeeEe------chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWV------QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs------~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|+. +.++.-+-. .+|..-.++.|+++|.++++.
T Consensus 367 D~vIVDl~DP~tps~~rlYS---~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYS---VEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEEeCCCCCCcchhhhhh---HHHHHHHHHhcCcCceEEEec
Confidence 99984 334433322 268888999999999998864
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00016 Score=58.42 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=42.9
Q ss_pred eeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC
Q 024100 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~ 222 (272)
++||+|||+|.++..+ ++.++ ++.++|+++.+.+.+++++..- ...++++++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~-~~~~~~~~v~~~E~~~~~~~~l~~~~~~n------~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYF-ARKGAEGRVIAFEPLPDAYEILEENVKLN------NLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHH-HHhCCCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEEeeee
Confidence 4899999999999977 46666 5999999999999999887421 1234666666554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=4.4e-05 Score=63.66 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=44.5
Q ss_pred eEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 214 v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++.|-......+.+++.|+|++..+++|++-++-..++++|++.|||||++-+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEE
Confidence 344443344445677899999999999999999999999999999999998854
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00046 Score=62.99 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=65.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.+.+|+=||||+=-+|.-++++. ...|+++|.++..++.|++.+... .+....+.|+++|..+...+-..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~----~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD----LGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------HH-SSEEEEES-GGGG-GG----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc----ccccCCeEEEecchhccccccccCCE
Confidence 45699999999877777666654 346889999999999999876411 12246789999998766544358999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+..... -++..++.++|.++.+.++||..+++.
T Consensus 196 V~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 196 VFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEE-TT--S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9977655 334456779999999999999988764
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=62.88 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=76.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-----------------------------------------cEEEEeCCHHHHH
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-----------------------------------------EVDLLEPVSHFLD 194 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-----------------------------------------~v~~vD~S~~mld 194 (272)
.+...++|-=||+|.+.++. +-... ...++|.++.|++
T Consensus 190 ~~~~pl~DPmCGSGTi~IEA-Al~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEA-ALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCccccCCCCccHHHHHH-HHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 34468999999999999987 34443 2679999999999
Q ss_pred HHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhh-hcChhh-----HHHHHHHHHHhcccCcEEEE
Q 024100 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTDDD-----FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 195 ~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~-hl~d~~-----~~~~l~~~~r~LkpgG~liv 267 (272)
.|+.|...+ +....|.|.++|+..+..+.+.+|+|||+---. -+.++. ...|.+.+++.++.-+..++
T Consensus 269 ~Ak~NA~~A-----Gv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 269 GAKANARAA-----GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHHHHhc-----CCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 999998754 356789999999999975536899999984311 222332 23455666677766665544
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=56.35 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=65.1
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCC---cEEEEeCCHH----HHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSH----FLDAARESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~---~v~~vD~S~~----mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-- 224 (272)
.+.++.+||-+|+.+|....++ +.... .|.+||.|+. .++.|+++ +|+--+-.|+...
T Consensus 70 ~ik~gskVLYLGAasGTTVSHv-SDIvg~~G~VYaVEfs~r~~rdL~~la~~R------------~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHV-SDIVGPDGVVYAVEFSPRSMRDLLNLAKKR------------PNIIPILEDARHPEK 136 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHH-HHHHTTTSEEEEEESSHHHHHHHHHHHHHS------------TTEEEEES-TTSGGG
T ss_pred CCCCCCEEEEecccCCCccchh-hhccCCCCcEEEEEecchhHHHHHHHhccC------------CceeeeeccCCChHH
Confidence 4678889999999999988878 56533 8999999995 45555543 4666667777532
Q ss_pred -CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 225 -~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..--+..|+|++.-+ + .++.+-++.++..-||+||.+++
T Consensus 137 Y~~lv~~VDvI~~DVa--Q--p~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 137 YRMLVEMVDVIFQDVA--Q--PDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp GTTTS--EEEEEEE-S--S--TTHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcccccccEEEecCC--C--hHHHHHHHHHHHhhccCCcEEEE
Confidence 111247999887655 2 13444788888899999998875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0051 Score=58.15 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=75.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC----cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~----~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~ 227 (272)
..++.+|||+.+++|.=|.+++ .... .|+++|.|+.=+...++++.+. ...++..++.|...++ +.
T Consensus 154 p~pge~VlD~cAAPGGKTthla-~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl------G~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLA-ELMENEGAIVVAVDVSPKRLKRLRENLKRL------GVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHH-HhcCCCCceEEEEcCCHHHHHHHHHHHHHc------CCCceEEEecccccccccccc
Confidence 4677899999999999998884 5543 4799999999999999998765 3456778887765442 22
Q ss_pred CCcceeeEe------chhhh-------hcChhh-------HHHHHHHHHHhcccCcEEEE
Q 024100 228 TGRYDVIWV------QWCIG-------HLTDDD-------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 228 ~~~fDlIvs------~~vl~-------hl~d~~-------~~~~l~~~~r~LkpgG~liv 267 (272)
.++||.|+. ..+++ ..+..+ ..++|....+.|||||.++-
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVY 286 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVY 286 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 235999992 23331 111111 23678888899999998863
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0027 Score=55.45 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=65.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----- 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----- 226 (272)
+.+..+|+|+||-+|.++..+ ++. .. .|.++|+.|- ...+++.++++|+.+-+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva-~~~~~~~~~ivavDi~p~-----------------~~~~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVA-AKKLGAGGKIVAVDILPM-----------------KPIPGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHH-HHHhCCCCcEEEEECccc-----------------ccCCCceEEeeeccCccHHHHHH
Confidence 456789999999999999966 454 33 3899986541 123468999999865431
Q ss_pred ---CCCcceeeEec--------hhhhhcChhhHH-HHHHHHHHhcccCcEEEEe
Q 024100 227 ---ETGRYDVIWVQ--------WCIGHLTDDDFV-SFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ---~~~~fDlIvs~--------~vl~hl~d~~~~-~~l~~~~r~LkpgG~liv~ 268 (272)
...++|+|+|- +..+|.....+. .++.-+.+.|+|||.++..
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 22357999963 233454333333 4556666899999998765
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0035 Score=55.20 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=76.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
.++++||.+|=|-|.+...+ .+. -..-..+|+.+..+...+..-- ....||-.+.+-+++. ..+++.||
T Consensus 100 tkggrvLnVGFGMgIidT~i-Qe~~p~~H~IiE~hp~V~krmr~~gw-------~ek~nViil~g~WeDvl~~L~d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFI-QEAPPDEHWIIEAHPDVLKRMRDWGW-------REKENVIILEGRWEDVLNTLPDKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHH-hhcCCcceEEEecCHHHHHHHHhccc-------ccccceEEEecchHhhhccccccCcc
Confidence 46779999999999988856 344 3356889999999988887642 2356888888888875 34567899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTF 265 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~l 265 (272)
-|+-----.| -+|+..+.+.+.++|||+|.+
T Consensus 172 GI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 172 GIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVF 202 (271)
T ss_pred eeEeechhhH--HHHHHHHHHHHhhhcCCCceE
Confidence 9986433233 267779999999999999986
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00066 Score=63.51 Aligned_cols=111 Identities=12% Similarity=0.026 Sum_probs=67.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC---cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~---~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
-.+.+|||||.|+|.....+ ...++ .++++|.|+..-+........... ........=+..|-.+++.. ..|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~-n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~a-d~yt 187 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWAL-NDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAA-DLYT 187 (484)
T ss_pred cCcchhhccCCCCchhhhhh-cccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCcc-ceee
Confidence 35567999999999877644 45554 678889888655444322211100 00111111122333344433 4788
Q ss_pred eeEechhhhhcCh-hhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTD-DDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|+...-|-|... .++...+.++...+.|||.+++.|.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 8887766656543 3445588999999999999999884
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0015 Score=56.61 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.-...+|||+|+|.|-.+..- ++. -..|...|..+-.++..+-+.+ .+...+.|...|.-. + +..||+
T Consensus 77 tVrgkrVLd~gagsgLvaIAa-a~aGA~~v~a~d~~P~~~~ai~lNa~-------angv~i~~~~~d~~g-~--~~~~Dl 145 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAA-ARAGAAEVVAADIDPWLEQAIRLNAA-------ANGVSILFTHADLIG-S--PPAFDL 145 (218)
T ss_pred ccccceeeecccccChHHHHH-HHhhhHHHHhcCCChHHHHHhhcchh-------hccceeEEeeccccC-C--CcceeE
Confidence 345679999999999999965 454 4578888988777666665542 244677888777755 3 357999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+.+.++..=+..+ +++. +.+.|+..|..+
T Consensus 146 ~LagDlfy~~~~a~--~l~~-~~~~l~~~g~~v 175 (218)
T COG3897 146 LLAGDLFYNHTEAD--RLIP-WKDRLAEAGAAV 175 (218)
T ss_pred EEeeceecCchHHH--HHHH-HHHHHHhCCCEE
Confidence 99998864423333 6666 777776666443
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0022 Score=57.07 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=67.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC--Cccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fDl 233 (272)
.++..+||+|+.||.+|.-+|.+....|.++|..-..+..--+. ....+.+-..++..+.+++ +..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCCCe
Confidence 46679999999999999988755577999999877655443221 2234445555665554322 36889
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+|--+|.. +..+|-.+...++|+|.++
T Consensus 148 ~v~DvSFIS-----L~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 148 IVIDVSFIS-----LKLILPALLLLLKDGGDLV 175 (245)
T ss_pred EEEEeehhh-----HHHHHHHHHHhcCCCceEE
Confidence 998777633 4578888999999998765
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00099 Score=64.98 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=59.1
Q ss_pred HHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC
Q 024100 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (272)
Q Consensus 141 ~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d 220 (272)
.|..++.++. +++....+||+-||||.++..+ ++....|.|||+++..++-|+.+... ....|.+|+++-
T Consensus 370 vLys~i~e~~---~l~~~k~llDv~CGTG~iglal-a~~~~~ViGvEi~~~aV~dA~~nA~~------NgisNa~Fi~gq 439 (534)
T KOG2187|consen 370 VLYSTIGEWA---GLPADKTLLDVCCGTGTIGLAL-ARGVKRVIGVEISPDAVEDAEKNAQI------NGISNATFIVGQ 439 (534)
T ss_pred HHHHHHHHHh---CCCCCcEEEEEeecCCceehhh-hccccceeeeecChhhcchhhhcchh------cCccceeeeecc
Confidence 3445555544 3667789999999999999977 79999999999999999999988643 246799999995
Q ss_pred CCCC
Q 024100 221 LQDF 224 (272)
Q Consensus 221 ~~~~ 224 (272)
.++.
T Consensus 440 aE~~ 443 (534)
T KOG2187|consen 440 AEDL 443 (534)
T ss_pred hhhc
Confidence 5553
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0034 Score=58.01 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=73.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccC---------C--------------C-------
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN---------H--------------M------- 206 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~---------~--------------~------- 206 (272)
...+||=-|||.|+++..| +..+..+.|-|.|--|+=...=.+.... . +
T Consensus 150 ~ki~iLvPGaGlGRLa~dl-a~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDL-ACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHH-HHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 3568999999999999999 6888999999988887754432221100 0 0
Q ss_pred --C--CCCCCceEEEEeCCCCCCCCC---CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 207 --A--PDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 207 --~--~~~~~~v~~~~~d~~~~~~~~---~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
. +......++-.+|+.+.-... +.||+|+.+|-+.- -.....++..+...|+|||..+-.-.|
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCcEEEeccce
Confidence 0 001112223446765543222 47999998866533 234568999999999999998866554
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00041 Score=53.43 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=41.9
Q ss_pred eEeecccchHHHHHHHhc--C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcceeeE
Q 024100 162 LDCGSGIGRITKNLLIRY--F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVIW 235 (272)
Q Consensus 162 LDiGcGtG~~t~~LLa~~--~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fDlIv 235 (272)
||+|+..|..+..+++.. . .++.++|+.+. .+.+++.+... ....+++++.++..+. ....++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------G-----GG-BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-----CCCCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 689999999998764221 2 26899998884 22222222211 1235799999998654 12235899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.-.. |- .+.....|..+...|+|||.++.-|
T Consensus 75 iDg~--H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGD--HS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCC--CC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7654 21 1334578888999999999887643
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0034 Score=54.96 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=66.0
Q ss_pred eeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-CCCCCCCCcceeeEech
Q 024100 161 ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVIWVQW 238 (272)
Q Consensus 161 VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fDlIvs~~ 238 (272)
|.||||-.|.+...|+.+. .+.+.++|+++.-++.|++++... +....+++..+|- +.+++. +..|+|++..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~-----~l~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY-----GLEDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-----T-TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCcccEEEEECCcccccCCC-CCCCEEEEec
Confidence 6899999999999997443 448999999999999999998754 2346799999994 455433 2478888543
Q ss_pred h----hhhc---------------ChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 239 C----IGHL---------------TDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 239 v----l~hl---------------~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
. +..+ =.|. .-...+++.|...|+-+..|.+
T Consensus 75 MGG~lI~~ILe~~~~~~~~~~~lILqP~--~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 75 MGGELIIEILEAGPEKLSSAKRLILQPN--THAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp E-HHHHHHHHHHTGGGGTT--EEEEEES--S-HHHHHHHHHHTTEEEEEEEE
T ss_pred CCHHHHHHHHHhhHHHhccCCeEEEeCC--CChHHHHHHHHHCCCEEEEeEE
Confidence 2 1010 0011 2345567778888887777754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0059 Score=53.32 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCc--EEEEeCCHHHHHHHHHhccccCCC-CCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~--v~~vD~S~~mld~A~~~l~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
++...+.|||||.|.+...| +..|++ +.|.|+--..-+..++++..++.. +.+..+|+.+...+...+.+ +-|.
T Consensus 59 ~~kvefaDIGCGyGGLlv~L-sp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp--n~f~ 135 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKL-APKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP--NFFE 135 (249)
T ss_pred cccceEEeeccCccchhhhc-cccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc--chhh
Confidence 34457999999999999988 798884 466677767777777776555433 22335667777666655532 2233
Q ss_pred eeEechhhhhcChhhHH-----------HHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFV-----------SFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~-----------~~l~~~~r~LkpgG~liv~ 268 (272)
--..+=-++-++|+.+. ..+.++.-+|++||.++..
T Consensus 136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 22222223334444321 4677788899999988643
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.001 Score=58.63 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=58.6
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC----CCCCCccee
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDV 233 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fDl 233 (272)
...|+|.-||.|..+..+ +..++.|.+||+++.-|..|+.+++.. +-..+|+|+|+|+.+. .+....+|+
T Consensus 95 ~~~iidaf~g~gGntiqf-a~~~~~VisIdiDPikIa~AkhNaeiY-----GI~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQF-ALQGPYVIAIDIDPVKIACARHNAEVY-----GVPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred cchhhhhhhcCCchHHHH-HHhCCeEEEEeccHHHHHHHhccceee-----cCCceeEEEechHHHHHHHHhhhhheeee
Confidence 347999999999999988 588999999999999999999998765 2345899999998543 223335777
Q ss_pred eEec
Q 024100 234 IWVQ 237 (272)
Q Consensus 234 Ivs~ 237 (272)
|+.+
T Consensus 169 vf~s 172 (263)
T KOG2730|consen 169 VFLS 172 (263)
T ss_pred eecC
Confidence 7743
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.003 Score=61.61 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=65.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
.-.+|+|..+|.|.++..|. .. .|.++...+. .....++..- .+ .-+-.+..=.|.|+.-+.+||+|-+
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~-~~--~VWVMNVVP~---~~~ntL~vIy--dR---GLIG~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALI-DD--PVWVMNVVPV---SGPNTLPVIY--DR---GLIGVYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred ceeeeeeecccccHHHHHhc-cC--CceEEEeccc---CCCCcchhhh--hc---ccchhccchhhccCCCCcchhheeh
Confidence 44589999999999999774 43 3554433222 1111110000 00 1122221112445444579999999
Q ss_pred chhhhhcChh-hHHHHHHHHHHhcccCcEEEEecC
Q 024100 237 QWCIGHLTDD-DFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 237 ~~vl~hl~d~-~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+.+|.+..+. +++.+|-+|.|+|+|||.+|+.|+
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 9998887664 567899999999999999999876
|
; GO: 0008168 methyltransferase activity |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0086 Score=54.85 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=74.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 230 (272)
..++..|||+.+|+|.=|..++.... ..+.+.|.++.-+...++++.+. ...++.....|...+. .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~------g~~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL------GVFNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT------T-SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc------CCceEEEEeeccccccccccccc
Confidence 34677899999999999997854433 48999999999999998887654 4557777777765552 12235
Q ss_pred ceeeEe----ch--hhhhcCh-------hh-------HHHHHHHHHHhc----ccCcEEEE
Q 024100 231 YDVIWV----QW--CIGHLTD-------DD-------FVSFFKRAKENI----ARSGTFLL 267 (272)
Q Consensus 231 fDlIvs----~~--vl~hl~d-------~~-------~~~~l~~~~r~L----kpgG~liv 267 (272)
||.|+. +. ++..-++ .+ ..++|++..+.+ +|||+++-
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvY 217 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVY 217 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 999993 32 2222111 11 235788888999 99998863
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0043 Score=55.76 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=56.4
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCC-C--CCCceEEEEeCCCCCCC-CCCcceeeE
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP-D--MHKATNFFCVPLQDFTP-ETGRYDVIW 235 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~-~--~~~~v~~~~~d~~~~~~-~~~~fDlIv 235 (272)
+|||+=+|+|+.+..+ +..+..|+++|-++.+....++.+..+..... . ...+++++.+|..++-. ...+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~l-as~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVL-ASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999977 57777899999999998888888765311000 0 11468888998866531 224799999
Q ss_pred e
Q 024100 236 V 236 (272)
Q Consensus 236 s 236 (272)
+
T Consensus 170 l 170 (250)
T PRK10742 170 L 170 (250)
T ss_pred E
Confidence 4
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=47.92 Aligned_cols=45 Identities=18% Similarity=0.037 Sum_probs=40.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~ 201 (272)
.+.+|+|||++.|..+..++.+....|.++|+++...+..++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 355999999999999999976777899999999999999999874
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=51.27 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=65.1
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhc-CC--cEEEEeCCHH----------HHHHHHHhccccCCCCCCCCCceEEEEeC
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVP 220 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~-~~--~v~~vD~S~~----------mld~A~~~l~~~~~~~~~~~~~v~~~~~d 220 (272)
++.++.+|+|+=.|.|.+|. +++.. ++ .|+.+-+.+. +-..+++. ...|+..+..+
T Consensus 45 Glkpg~tVid~~PGgGy~Tr-I~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----------~~aN~e~~~~~ 113 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTR-IFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----------VYANVEVIGKP 113 (238)
T ss_pred ccCCCCEEEEEecCCccHhh-hhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----------hhhhhhhhCCc
Confidence 46788999999999999999 54665 33 4454433322 11122221 12355666666
Q ss_pred CCCCCCCCCcceeeEechhhhhcC-----hhhHHHHHHHHHHhcccCcEEEEec
Q 024100 221 LQDFTPETGRYDVIWVQWCIGHLT-----DDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 221 ~~~~~~~~~~fDlIvs~~vl~hl~-----d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+. .++..|+++.+..-|-++ ..-..++...+.+.|||||.+++.|
T Consensus 114 ~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 114 LVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred ccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 66655 335788888533322221 1223489999999999999998876
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=56.96 Aligned_cols=113 Identities=16% Similarity=0.089 Sum_probs=72.1
Q ss_pred CCCCeeeEeecccchHHH--HHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcc
Q 024100 156 NQHLVALDCGSGIGRITK--NLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~--~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 231 (272)
..+..++|+|.|.|.-.- .++.+. ...++.||.|..|...+...+.....+......++.|+..-+ +. ..+.|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~---pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRL---PIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccC---CCCcccce
Confidence 456789999888764443 233333 557899999999999998887542111111112222322211 21 22469
Q ss_pred eeeEechhhhhcChhhHH--HHHHHHHHhcccCcEEEEecCC
Q 024100 232 DVIWVQWCIGHLTDDDFV--SFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~--~~l~~~~r~LkpgG~liv~E~~ 271 (272)
|+|++++.++|++..... ..-+-++...++||++++.|+.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 999999999999876432 2334456788999999998875
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0049 Score=52.03 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=63.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCce---EEEEeCCCCCCCCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT---NFFCVPLQDFTPETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v---~~~~~d~~~~~~~~~~f 231 (272)
.+.+||++|.|-=.++.-+++... ..|-++|-++..+...++-...-. .+ ..... ++..-..+.. ...++|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~--~s-~~tsc~vlrw~~~~aqsq-~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM--AS-SLTSCCVLRWLIWGAQSQ-QEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc--cc-ccceehhhHHHHhhhHHH-HhhCcc
Confidence 446899999995555554555543 478889988888877665432100 00 01111 1111111111 123589
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|.|++..++.+ ++-...+.+-++..|+|.|.-++
T Consensus 105 DiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 105 DIILAADCLFF--DEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred cEEEeccchhH--HHHHHHHHHHHHHHhCcccceeE
Confidence 99999999844 44455788999999999997554
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.011 Score=54.29 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=78.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 230 (272)
...+.++|=||.|.|.+.+... ++ +.++..+|+....++..++.++... +.-.++.+.++-+|-..|- ...++
T Consensus 119 ~~npkkvlVVgggDggvlrevi-kH~~ve~i~~~eiD~~Vie~sk~y~p~la--~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVI-KHKSVENILLCEIDENVIESSKQYLPTLA--CGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCCCeEEEEecCCccceeeee-ccccccceeeehhhHHHHHHHHHHhHHHh--cccCCCceEEEeccHHHHHHHhccCC
Confidence 4567899999999999999763 54 5678889999999999888765432 1234678888888865441 23479
Q ss_pred ceeeEechh--hhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 231 YDVIWVQWC--IGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 231 fDlIvs~~v--l~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
||+|+.-.. ..-.-..=...++..+.++||+||+++...
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 999994322 111000112468888999999999987654
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.023 Score=54.25 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=19.4
Q ss_pred CCCCCCCCCCcceeeEechhhhhcCh
Q 024100 220 PLQDFTPETGRYDVIWVQWCIGHLTD 245 (272)
Q Consensus 220 d~~~~~~~~~~fDlIvs~~vl~hl~d 245 (272)
.+..--++.++.++++|++++|+++.
T Consensus 152 SFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 152 SFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred cccccccCCCceEEEEeeccceeccc
Confidence 33333356689999999999999863
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.016 Score=53.66 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----CCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETG 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~ 229 (272)
.+++.++|+=+|.|..|..++... ...|+++|.++.+++.|++.+.. ...++.++++++.++.. ..+
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~-------~~~R~~~i~~nF~~l~~~l~~~~~~ 91 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD-------FEGRVVLIHDNFANFFEHLDELLVT 91 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh-------cCCcEEEEeCCHHHHHHHHHhcCCC
Confidence 466799999999999999887443 26899999999999999998743 23578899988876531 224
Q ss_pred cceeeEec--hhhhhcChhh
Q 024100 230 RYDVIWVQ--WCIGHLTDDD 247 (272)
Q Consensus 230 ~fDlIvs~--~vl~hl~d~~ 247 (272)
++|.|+.. .+.+++.+++
T Consensus 92 ~vDgIl~DLGvSS~Qld~~~ 111 (305)
T TIGR00006 92 KIDGILVDLGVSSPQLDDPE 111 (305)
T ss_pred cccEEEEeccCCHhhcCCCC
Confidence 68888853 3445555554
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0057 Score=48.21 Aligned_cols=39 Identities=31% Similarity=0.553 Sum_probs=30.4
Q ss_pred cceeeEechhhh--hcC--hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIG--HLT--DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~--hl~--d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.||+|.|-.+.. |++ |+.+..+|+++++.|+|||.+|+-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 499999865422 553 677899999999999999999863
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.09 Score=47.95 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=59.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~ 229 (272)
..++.+|++-|.|.|.++..+ ++.. .++.-+|..+.-.+.|.+.+... +-..++++..-|+..- .....
T Consensus 103 i~PGsvV~EsGTGSGSlShai-araV~ptGhl~tfefH~~Ra~ka~eeFr~h-----gi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAI-ARAVAPTGHLYTFEFHETRAEKALEEFREH-----GIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred CCCCCEEEecCCCcchHHHHH-HHhhCcCcceEEEEecHHHHHHHHHHHHHh-----CCCcceEEEEeecccCCcccccc
Confidence 678899999999999999988 4653 47778899888888888888654 3467899999888653 33346
Q ss_pred cceeeEec
Q 024100 230 RYDVIWVQ 237 (272)
Q Consensus 230 ~fDlIvs~ 237 (272)
.+|.|+.-
T Consensus 177 ~aDaVFLD 184 (314)
T KOG2915|consen 177 KADAVFLD 184 (314)
T ss_pred ccceEEEc
Confidence 89998854
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.034 Score=50.07 Aligned_cols=107 Identities=15% Similarity=0.066 Sum_probs=62.0
Q ss_pred CCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CCCCc-c
Q 024100 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGR-Y 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~-f 231 (272)
...+||++|+|+|-.+... +. .+.+|...|....+.... .+....+...+.....+.....++.... .-... +
T Consensus 86 ~~~~vlELGsGtglvG~~a-a~~~~~~v~ltD~~~~~~~L~-~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILA-ALLLGAEVVLTDLPKVVENLK-FNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHH-HHHhcceeccCCchhhHHHHH-HhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4568999999999777744 44 577888887555433222 2110000000111224444444443321 11123 9
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|+++-++.+-...+ .+..-++..|..+|.++.
T Consensus 164 DlilasDvvy~~~~~e--~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 164 DLILASDVVYEEESFE--GLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cEEEEeeeeecCCcch--hHHHHHHHHHhcCCeEEE
Confidence 9999999986644444 788888888888885543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.012 Score=55.10 Aligned_cols=89 Identities=8% Similarity=-0.042 Sum_probs=43.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-------C----------CcEEEEe-CCHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-------F----------NEVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-------~----------~~v~~vD-~S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
....+|+|+||..|..|..++... + -+|..-| |+-.+=...+..............--+.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 456699999999999998765331 1 1455556 554444433321100000000001112233
Q ss_pred EeCCCCCCCCCCcceeeEechhhhhcC
Q 024100 218 CVPLQDFTPETGRYDVIWVQWCIGHLT 244 (272)
Q Consensus 218 ~~d~~~~~~~~~~fDlIvs~~vl~hl~ 244 (272)
.+.+..--+++++.|+++|+++||+++
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred CchhhhccCCCCceEEEEEechhhhcc
Confidence 455655445678999999999999885
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.019 Score=55.34 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=62.3
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-CcceeeEec
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWVQ 237 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlIvs~ 237 (272)
..|||||.|||-++..........|+++|.-.+|.+.|+.-... ++...+|+++..--.+....+ -+.|+++..
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k-----ng~SdkI~vInkrStev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK-----NGMSDKINVINKRSTEVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc-----CCCccceeeeccccceeeecCcchhhhhhHh
Confidence 46899999999999955333466899999999999999987643 234567777776555544322 246776654
Q ss_pred hhhhhcChhhHHHHHHHHHHhc
Q 024100 238 WCIGHLTDDDFVSFFKRAKENI 259 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~L 259 (272)
-..-.+.-+....-+++..+.|
T Consensus 143 ~fdtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhhhccccchhHHHHHHHh
Confidence 4433333333334555555544
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.064 Score=49.55 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=44.8
Q ss_pred CCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-C----CCCCCCc
Q 024100 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-D----FTPETGR 230 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~----~~~~~~~ 230 (272)
...++||||+|...+---|.++ +.-+++++|+++..++.|++++..= .....+|++....-. . +....+.
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N----~~L~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN----PNLESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc----cccccceEEEEcCCccccchhhhcccce
Confidence 3568999999987654424333 3558899999999999999998531 123457777755322 1 1122358
Q ss_pred ceeeEechhhhh
Q 024100 231 YDVIWVQWCIGH 242 (272)
Q Consensus 231 fDlIvs~~vl~h 242 (272)
||+.+|+--|+-
T Consensus 178 ~dftmCNPPFy~ 189 (299)
T PF05971_consen 178 FDFTMCNPPFYS 189 (299)
T ss_dssp EEEEEE-----S
T ss_pred eeEEecCCcccc
Confidence 999999988844
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.11 Score=48.14 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=76.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcC----------------------CcEEEEe--CCHHHHHHHHHhcccc---------
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF----------------------NEVDLLE--PVSHFLDAARESLAPE--------- 203 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~----------------------~~v~~vD--~S~~mld~A~~~l~~~--------- 203 (272)
+..+||.||.|.|.=...|. ..+ -++++|| +-...++.-...+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlA-a~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~ 164 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALA-AAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASA 164 (315)
T ss_pred cCceEEEECCChHHHHHHHH-HHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccc
Confidence 34699999999986555452 322 2788998 4455676666655432
Q ss_pred --CCCCCCCCCceEEEEeCCCCCCCCC-------CcceeeEechhhhhcCh---hhHHHHHHHHHHhcccCcEEEEecC
Q 024100 204 --NHMAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHLTD---DDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 204 --~~~~~~~~~~v~~~~~d~~~~~~~~-------~~fDlIvs~~vl~hl~d---~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
........-+++|.+.|+.....++ ...|+|...+.+..+-. .+-.+||.++-..++||-.++|+||
T Consensus 165 ~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 165 ANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 0011122347899999997765321 24789988888766522 2345899999999999999999997
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.032 Score=49.75 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=46.3
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCC---CCCCceEEEEeCCCCCC-CCCCcceee
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMHKATNFFCVPLQDFT-PETGRYDVI 234 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~---~~~~~v~~~~~d~~~~~-~~~~~fDlI 234 (272)
.+|||+=+|-|+-+. +++..+.+|+++|-|+.+-...+.-+..+..... ....+++++.+|..++- .++++||+|
T Consensus 77 ~~VLDaTaGLG~Da~-vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAF-VLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHH-HHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHH-HHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 389999999999999 4467888999999999876655544333211000 01258999999988753 334799999
Q ss_pred Eec
Q 024100 235 WVQ 237 (272)
Q Consensus 235 vs~ 237 (272)
+.-
T Consensus 156 Y~D 158 (234)
T PF04445_consen 156 YFD 158 (234)
T ss_dssp EE-
T ss_pred EEC
Confidence 953
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.077 Score=43.71 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=54.5
Q ss_pred cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CC-CcceeeEechhhhhcChhh---------HHH
Q 024100 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ET-GRYDVIWVQWCIGHLTDDD---------FVS 250 (272)
Q Consensus 182 ~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~-~~fDlIvs~~vl~hl~d~~---------~~~ 250 (272)
+|.++|+-++.|+.+++++.... ...+++++..+=+.+.. -+ +++|+++.|.- |||.-| -..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-----~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-----LEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-----CCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence 58899999999999999997542 23479999877655431 12 48999887654 564322 347
Q ss_pred HHHHHHHhcccCcEEEEe
Q 024100 251 FFKRAKENIARSGTFLLS 268 (272)
Q Consensus 251 ~l~~~~r~LkpgG~liv~ 268 (272)
+++.+.+.|+|||.+++.
T Consensus 74 Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEE
Confidence 888899999999998764
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.095 Score=46.90 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=35.0
Q ss_pred CCeeeEeecccchHHHHHHHhc--C-------CcEEEEeCCHHHHHHHHHhccc
Q 024100 158 HLVALDCGSGIGRITKNLLIRY--F-------NEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~--~-------~~v~~vD~S~~mld~A~~~l~~ 202 (272)
+.+|+|+|+|.|.++..+|... . .++.+||+|+.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4699999999999999987432 1 2689999999999999998854
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.096 Score=49.48 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=65.4
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-C----CCCCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L----QDFTPE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~----~~~~~~ 227 (272)
+.++.+||..|||. |..+..++...+. .+.+++.++++++.+++... ...+.+...+ + .++. .
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---------~~vi~~~~~~~~~~~l~~~~-~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---------AETINFEEVDDVVEALRELT-G 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------cEEEcCCcchHHHHHHHHHc-C
Confidence 45677999999997 8888888655554 59999999999999987531 1122222211 1 1121 1
Q ss_pred CCcceeeEechh-------h----hhc----ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWC-------I----GHL----TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~v-------l----~hl----~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+|+|+-.-. + .|. +++. ..+.++.+.|+++|.++..
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRP--DALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCch--HHHHHHHHHhccCCEEEEE
Confidence 236888875321 1 111 2333 6788899999999998865
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.28 Score=43.04 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=68.3
Q ss_pred cCCCccCCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-
Q 024100 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (272)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~- 225 (272)
.+...++.++.+||=+|+.+|....++ +... ..+.+||.|+.+....-.... .-+|+--+..|+....
T Consensus 68 Gl~~~pi~~g~~VLYLGAasGTTvSHV-SDIv~~G~iYaVEfs~R~~reLl~~a~--------~R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 68 GLKNFPIKEGSKVLYLGAASGTTVSHV-SDIVGEGRIYAVEFSPRPMRELLDVAE--------KRPNIIPILEDARKPEK 138 (231)
T ss_pred CcccCCcCCCCEEEEeeccCCCcHhHH-HhccCCCcEEEEEecchhHHHHHHHHH--------hCCCceeeecccCCcHH
Confidence 333335778899999999999998888 5653 468999988876544433331 1246666666764321
Q ss_pred --CCCCcceeeEechhhhhcChh-hHHHHHHHHHHhcccCcEEEE
Q 024100 226 --PETGRYDVIWVQWCIGHLTDD-DFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 226 --~~~~~fDlIvs~~vl~hl~d~-~~~~~l~~~~r~LkpgG~liv 267 (272)
.--+..|+|+.--+ .+ +..-+..++..-|++||.+++
T Consensus 139 Y~~~Ve~VDviy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 139 YRHLVEKVDVIYQDVA-----QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred hhhhcccccEEEEecC-----CchHHHHHHHHHHHhcccCCeEEE
Confidence 11136888876433 33 333577788899999996654
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.24 Score=49.16 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=64.9
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-----------
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ----------- 222 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~----------- 222 (272)
..++.+|+=+||| .|..+...+...+..|.++|.+++-++.+++. .. ++...+..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA------------~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GA------------EFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEEeccccccccccchhh
Confidence 4568899999999 57777777656688999999999999998873 21 11111110
Q ss_pred CCCC----------CC--CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 223 DFTP----------ET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 223 ~~~~----------~~--~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+... .+ ..+|+|+..-..-.-..+. -+.+++.+.++|||.+++.
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~--lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPK--LITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcc--hHHHHHHHhcCCCCEEEEE
Confidence 0100 11 3599998765531111122 3358999999999999875
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.12 Score=46.55 Aligned_cols=81 Identities=14% Similarity=0.034 Sum_probs=55.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
...+.+|+|||||.=-++...+... ...+.++|++..+++.....+.. .....++...|+..-+++ ...|+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~-------l~~~~~~~v~Dl~~~~~~-~~~Dl 174 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV-------LGVPHDARVRDLLSDPPK-EPADL 174 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH-------TT-CEEEEEE-TTTSHTT-SEESE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh-------hCCCcceeEeeeeccCCC-CCcch
Confidence 3457899999999999888765222 34889999999999999887654 245677888888765443 58999
Q ss_pred eEechhhhhc
Q 024100 234 IWVQWCIGHL 243 (272)
Q Consensus 234 Ivs~~vl~hl 243 (272)
....=+++-+
T Consensus 175 aLllK~lp~l 184 (251)
T PF07091_consen 175 ALLLKTLPCL 184 (251)
T ss_dssp EEEET-HHHH
T ss_pred hhHHHHHHHH
Confidence 9987777554
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.094 Score=47.71 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=50.3
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--CCcceeeEec
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fDlIvs~ 237 (272)
+++|+-||.|.++..+....+..+.++|.++..++..+.+... .++++|+.++... ...+|+|+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------------KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------------CCccCccccCchhhcCCCCCEEEeC
Confidence 6999999999999988433356678899999999999887631 1566777776542 2479999954
Q ss_pred h
Q 024100 238 W 238 (272)
Q Consensus 238 ~ 238 (272)
.
T Consensus 70 p 70 (275)
T cd00315 70 F 70 (275)
T ss_pred C
Confidence 3
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.64 Score=41.13 Aligned_cols=75 Identities=16% Similarity=0.043 Sum_probs=56.3
Q ss_pred CCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CCCCCCcceeeE
Q 024100 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIW 235 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fDlIv 235 (272)
..++.||||-.|++..+|+... ...+++.|+++.-++.|.+++... ...+.++..++|-.. +.++ ..+|+|+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-----~l~~~i~vr~~dgl~~l~~~-d~~d~iv 90 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-----NLSERIDVRLGDGLAVLELE-DEIDVIV 90 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-----CCcceEEEeccCCccccCcc-CCcCEEE
Confidence 3469999999999999987443 457888999999999999998653 345677777877633 3322 3799998
Q ss_pred ech
Q 024100 236 VQW 238 (272)
Q Consensus 236 s~~ 238 (272)
...
T Consensus 91 IAG 93 (226)
T COG2384 91 IAG 93 (226)
T ss_pred EeC
Confidence 654
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.26 Score=46.39 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=64.3
Q ss_pred cCCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-CCCCCCCCCcc
Q 024100 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRY 231 (272)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~f 231 (272)
+..+..+|+=+|+| .|..+.+++...+.+|+++|.|++-++.|++.-+ -.++... -.....-.+.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA------------d~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA------------DHVINSSDSDALEAVKEIA 230 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC------------cEEEEcCCchhhHHhHhhC
Confidence 35677788888766 6688888865578999999999999999987521 1233322 22222112349
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+..-. . ..+....+.|++||.++..
T Consensus 231 d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 231 DAIIDTVG-P--------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred cEEEECCC-h--------hhHHHHHHHHhcCCEEEEE
Confidence 99887655 2 3566678899999998754
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.14 Score=40.36 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=34.0
Q ss_pred HHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeC
Q 024100 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (272)
Q Consensus 138 s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~ 188 (272)
...||..+...... ..+.....|+|||.|-+.. +|.+.+..-.|+|.
T Consensus 42 IAAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~-IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 42 IAAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVY-ILNSEGYPGWGIDA 88 (112)
T ss_pred HHHHHHHHHhcccC---CCCCCceEEccCCchHHHH-HHHhCCCCcccccc
Confidence 35677777665433 2456689999999999998 55677777788863
|
; GO: 0008168 methyltransferase activity |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.37 Score=44.59 Aligned_cols=96 Identities=21% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+||=.||| .|..+..++...+. .|.+++.+++-++.+++ +.. ...++....++.++....+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lGa--------~~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MGA--------DKLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cCC--------cEEecCCcccHHHHhccCCCCCE
Confidence 356788888876 56666666544455 68899999998988876 321 11122112222222211235898
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+-.-. .+ ..+..+.+.|++||.++..
T Consensus 239 vid~~G-----~~---~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 239 SFEVSG-----HP---SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEECCC-----CH---HHHHHHHHHhhcCCEEEEE
Confidence 875432 12 3566778889999998764
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.67 Score=42.01 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=61.1
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC------CCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TPE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~------~~~ 227 (272)
+.++.+||..|+| .|..+..++...+.+|++++.++...+.+++ +. . +.+..+-+.. ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~-~g---------~---~~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE-LG---------A---DEVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-hC---------C---CEEEcCCCcCHHHHHHHhc
Confidence 4566788888876 5888888866677789999999999888855 21 0 1111111110 112
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.+|+|+.+... . ..+.++.+.|+++|.++..
T Consensus 230 ~~~~D~vid~~g~------~--~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT------Q--PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 3479988754321 2 4777888999999998764
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.4 Score=39.77 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=69.4
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHH-HHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CC-------CCCC
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH-FLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-------PETG 229 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~-mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~ 229 (272)
.-|+.+|||-=.-...+ .....+..+|++.. +++.-++.+.... .....+..++.+|+.+ +. +.++
T Consensus 83 ~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~P~v~~~K~~~l~~~~---~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRL--PWPDGTRVFEVDQPAVLAFKEKVLAELG---AEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred cEEEEeCCccccHHHhc--CCCCCCeEEECCChHHHHHHHHHHHHcC---CCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 35999999976555545 22235778885544 5665555554321 1124577888888851 11 1122
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.--++++..++.|++.++..++|+.+.+...||+.++.
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45577788999999999999999999999889887653
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.17 Score=47.07 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----C-C
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~-~ 227 (272)
..+++.++|+=-|.|..|..+|... ...+.++|.++.+++.|++++.. ...++.++..++.++. . .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-------~~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-------FDDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-------CCTTEEEEES-GGGHHHHHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-------ccceEEEEeccHHHHHHHHHHccC
Confidence 3567799999999999999998553 36899999999999999998853 2467888888886542 1 2
Q ss_pred CCcceeeEe--chhhhhcChh
Q 024100 228 TGRYDVIWV--QWCIGHLTDD 246 (272)
Q Consensus 228 ~~~fDlIvs--~~vl~hl~d~ 246 (272)
..++|-|++ ..+.+|+.++
T Consensus 91 ~~~~dgiL~DLGvSS~Qld~~ 111 (310)
T PF01795_consen 91 INKVDGILFDLGVSSMQLDDP 111 (310)
T ss_dssp TS-EEEEEEE-S--HHHHHTG
T ss_pred CCccCEEEEccccCHHHhCCC
Confidence 246777774 2334444443
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.41 Score=47.47 Aligned_cols=99 Identities=10% Similarity=0.090 Sum_probs=64.1
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC------------
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL------------ 221 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~------------ 221 (272)
..++.+|+=+||| .|..+..++...+..|.++|.++.-++.++. +.. +++..+.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa------------~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA------------EFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC------------eEEecccccccccccccee
Confidence 3457899999999 5677776766678899999999998887776 321 1111111
Q ss_pred ---CCCC------CC--CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 222 ---QDFT------PE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 222 ---~~~~------~~--~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++. +. -..+|+|+.+-.+.--+.+. -+.+++.+.+|||+.++|.
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~--Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPK--LITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCe--eehHHHHhhCCCCCEEEEe
Confidence 0110 11 13699998766442222222 3677889999999999875
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.22 Score=43.22 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CC--cEEEEeC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEP 188 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~--~v~~vD~ 188 (272)
+++..+||||||.+|.++.-. .+. .+ -|.+||+
T Consensus 67 l~p~~~VlD~G~APGsWsQVa-vqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVA-VQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHH-HHhhCCCceEEEEee
Confidence 467889999999999999944 344 23 5677763
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.35 Score=41.32 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~ 198 (272)
..+++.++... ..++..|||.=||+|..+... .+.+.+..++|.++...+.|++
T Consensus 178 ~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa-~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAA-EELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHH-HHTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-----hccceeeehhhhccChHHHHH-HHcCCeEEEEeCCHHHHHHhcC
Confidence 34555555422 246789999999999999965 5888999999999999999864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.26 Score=46.63 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=39.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---------CCcEEEEeCCHHHHHHHHHhccc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---------~~~v~~vD~S~~mld~A~~~l~~ 202 (272)
.+.+-.++++|+|+|.++..+|... ..++..||+|++....-++.++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 4556789999999999999987543 23778999999999998888854
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.87 Score=41.23 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=74.8
Q ss_pred CCCeeeEeecccchHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCC-
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPET- 228 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-----~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~- 228 (272)
.....+|+|+|+-.=|+.|+... -....-||+|+..+....+.+... -..-.+.-+++|.+.. .++.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~-----y~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE-----YPGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh-----CCCCeEeehhhhHHHHHhcccCC
Confidence 46689999999998888776322 125688999999887655544211 1123455566776532 1122
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
++==.++...+|..++..+...||.++...|+||-++++-=+
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 334445577889999998888999999999999998876443
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.41 Score=41.92 Aligned_cols=102 Identities=7% Similarity=0.007 Sum_probs=50.5
Q ss_pred CCCeeeEeecccchHHHHHHHh---c---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----
Q 024100 157 QHLVALDCGSGIGRITKNLLIR---Y---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---- 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~---~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---- 226 (272)
+|..|+|+|.=.|..+..+ |. . ..+|.+||+...-.+. ..++. ....++|+|+++|..+...
T Consensus 32 kPd~IIE~Gi~~GGSli~~-A~ml~~~~~~~~VigiDIdir~~~~--~a~e~-----hp~~~rI~~i~Gds~d~~~~~~v 103 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFW-ASMLELLGGKGKVIGIDIDIRPHNR--KAIES-----HPMSPRITFIQGDSIDPEIVDQV 103 (206)
T ss_dssp --SEEEEE--TTSHHHHHH-HHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHTS
T ss_pred CCCeEEEEecCCCchHHHH-HHHHHHhCCCceEEEEeCCcchhch--HHHhh-----ccccCceEEEECCCCCHHHHHHH
Confidence 4669999999998877744 33 2 2699999975432222 11111 0124689999998865421
Q ss_pred ----CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 227 ----ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 227 ----~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
......+|+.- +- |.. +...+.|+.+...+++|+++|+-|
T Consensus 104 ~~~~~~~~~vlVilD-s~-H~~-~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 104 RELASPPHPVLVILD-SS-HTH-EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp GSS----SSEEEEES-S------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred HHhhccCCceEEEEC-CC-ccH-HHHHHHHHHhCccCCCCCEEEEEe
Confidence 01133454422 21 221 224467777899999999998765
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.48 Score=39.66 Aligned_cols=76 Identities=21% Similarity=0.100 Sum_probs=54.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.++.+|+|+|.|++-... ++.+ ...+++|.++-.+..++-..-+. +-.....|..-|+-.++..+ |..+
T Consensus 71 n~~GklvDlGSGDGRiVlaa-ar~g~~~a~GvELNpwLVaysrl~a~R~-----g~~k~trf~RkdlwK~dl~d--y~~v 142 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAA-ARCGLRPAVGVELNPWLVAYSRLHAWRA-----GCAKSTRFRRKDLWKVDLRD--YRNV 142 (199)
T ss_pred CCCCcEEeccCCCceeehhh-hhhCCCcCCceeccHHHHHHHHHHHHHH-----hcccchhhhhhhhhhccccc--cceE
Confidence 46679999999999999866 5665 68899999999988887543221 22456778888887776544 5555
Q ss_pred Eechh
Q 024100 235 WVQWC 239 (272)
Q Consensus 235 vs~~v 239 (272)
++..+
T Consensus 143 viFga 147 (199)
T KOG4058|consen 143 VIFGA 147 (199)
T ss_pred EEeeh
Confidence 54433
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.55 Score=42.81 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcc
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~ 201 (272)
.+++.++.-. -.+++.|||.=||+|..+... .+.+.+..|+|++++.++.|++++.
T Consensus 196 ~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA-~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 196 ALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVA-KASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 4455555421 257889999999999999955 5889999999999999999999984
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.36 Score=44.67 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=51.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~ 224 (272)
..+.+..+|+=-|.|..+..+|.+.. .+++++|.++.+++.|++.+.. ...+++++...+.++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-------~~~r~~~v~~~F~~l 85 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-------FDGRVTLVHGNFANL 85 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-------cCCcEEEEeCcHHHH
Confidence 45678999999999999999986653 4699999999999999998853 246788888877554
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.1 Score=41.52 Aligned_cols=94 Identities=24% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeC---CHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~---S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
.++.+||=+|+| .|.++..++...+.+|++++. ++.-++.+++ +. ...+.....++.+.. ..+.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~-~G---------a~~v~~~~~~~~~~~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE-LG---------ATYVNSSKTPVAEVK-LVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cC---------CEEecCCccchhhhh-hcCCC
Confidence 356789988887 577777775555668999885 6777777764 31 111211111211111 12468
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+-.-. .. ..+.+..+.|++||.++..
T Consensus 240 d~vid~~g------~~--~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 240 DLIIEATG------VP--PLAFEALPALAPNGVVILF 268 (355)
T ss_pred CEEEECcC------CH--HHHHHHHHHccCCcEEEEE
Confidence 98885432 11 3677788899999988753
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.59 Score=44.64 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=34.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~ 198 (272)
..-..|.|+|+|.|.++.-+.-+++-.|.+||-|....+.|+.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3445899999999999996644567799999999888777753
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=91.33 E-value=2.6 Score=37.85 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=54.0
Q ss_pred CCCeeeEeecccchHHHHH-HHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC--Cccee
Q 024100 157 QHLVALDCGSGIGRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~L-La~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fDl 233 (272)
.+.+||-+|=..- ++..+ +.....+|+++|+++.+++.-++..... .-.++.+..|+.+--|+. ++||+
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~-------gl~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEE-------GLPIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH-------T--EEEE---TTS---TTTSS-BSE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc-------CCceEEEEecccccCCHHHhcCCCE
Confidence 4568999985443 22222 1344669999999999999887665432 234899999997643332 79999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCc
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSG 263 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG 263 (272)
+++.-.- |-+.+.-|+.+..+.|+..|
T Consensus 116 f~TDPPy---T~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 116 FFTDPPY---TPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEE---S---SHHHHHHHHHHHHHTB-STT
T ss_pred EEeCCCC---CHHHHHHHHHHHHHHhCCCC
Confidence 9986331 12557789999999998766
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.38 Score=44.01 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHH-Hhccc---cCCCCCCCCCceEEEEeCCCCCCC-CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR-ESLAP---ENHMAPDMHKATNFFCVPLQDFTP-ETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~-~~l~~---~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 229 (272)
.....+|||+|||.|--...........+...|.|...++.-. .++.. +............+.+..+.++.+ ..+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 3467799999999998888653233368888888887773110 00000 000000112223333331212221 112
Q ss_pred --cceeeEechhhhhcChhhHHHH-HHHHHHhcccCcEEEE
Q 024100 230 --RYDVIWVQWCIGHLTDDDFVSF-FKRAKENIARSGTFLL 267 (272)
Q Consensus 230 --~fDlIvs~~vl~hl~d~~~~~~-l~~~~r~LkpgG~liv 267 (272)
.||+|.++-.+.-.+... .+ .......++++|.+++
T Consensus 194 ~~~ydlIlsSetiy~~~~~~--~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLA--VLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ccchhhhhhhhhhhCcchhh--hhHhhhhhhcCCccchhhh
Confidence 799999999885543333 22 4445566788887654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.29 Score=46.82 Aligned_cols=58 Identities=5% Similarity=0.103 Sum_probs=51.0
Q ss_pred CCceEEEEeCCCCCC--CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 211 HKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 211 ~~~v~~~~~d~~~~~--~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+++++..++.++. .++++||.++.+..+.++++.++.+.++++.+.++|||.|+..
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 478999999998762 3457999999999999999999999999999999999998753
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.3 Score=40.46 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+||-.|||. |..+..++...+. .+.+++.++...+.+++ +.. ...+.....++.......+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~g~--------~~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-MGA--------DETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCC--------CEEEcCCchhhhhhhccCCCccEE
Confidence 567888888775 7777777555565 78999999988886654 211 011111111111222222359998
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..... . ..++...+.|+++|.++..
T Consensus 236 ld~~g~------~--~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA------P--AALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC------H--HHHHHHHHHHhcCCEEEEE
Confidence 865331 1 3567788999999998753
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.53 E-value=2.4 Score=40.31 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=64.8
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCC-----cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-- 226 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~-----~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-- 226 (272)
++.++.+|||..+-+|.=|..|+...+. .|.+-|.++.=+......+... ...++.+...++..++-
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l------~~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL------PSPNLLVTNHDASLFPNIY 225 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc------CCcceeeecccceeccccc
Confidence 4678899999999999999988755442 5777787776555444433221 22344444444433321
Q ss_pred -------CCCcceeeEe----c--hhhhhcCh--------------hh-HHHHHHHHHHhcccCcEEEE
Q 024100 227 -------ETGRYDVIWV----Q--WCIGHLTD--------------DD-FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 227 -------~~~~fDlIvs----~--~vl~hl~d--------------~~-~~~~l~~~~r~LkpgG~liv 267 (272)
....||=|.+ + .++.+-++ +. ...++.+..+.|++||.+|=
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY 294 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY 294 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 1136888773 1 11111111 11 23678888899999998863
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.82 Score=42.42 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=45.6
Q ss_pred eeEeecccchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-CcceeeEe
Q 024100 161 ALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWV 236 (272)
Q Consensus 161 VLDiGcGtG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlIvs 236 (272)
|+|+-||.|.++.-| .+.+.+ +.++|.++..++.-+.++. . .++++|+.++.+.+ ..+|+++.
T Consensus 1 vidLF~G~GG~~~Gl-~~aG~~~~~a~e~~~~a~~ty~~N~~-----------~-~~~~~Di~~~~~~~~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGF-EQAGFKCVFASEIDKYAQKTYEANFG-----------N-KVPFGDITKISPSDIPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHH-HHcCCeEEEEEeCCHHHHHHHHHhCC-----------C-CCCccChhhhhhhhCCCcCEEEe
Confidence 689999999999988 455444 5679999999998888763 1 34456777665321 35899884
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.79 Score=42.76 Aligned_cols=100 Identities=9% Similarity=0.061 Sum_probs=72.6
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|.=+|.| .|..+..++...+.+|+.+|.|..-+......+ ..++...-.....+...-..+|+|+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f----------~~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF----------GGRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh----------CceeEEEEcCHHHHHHHhhhccEEE
Confidence 45578888888 577777787677999999999988777777665 2356666666555533335899988
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..-.+---..|. -..+++...++||+.++|.
T Consensus 237 gaVLIpgakaPk--Lvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 237 GAVLIPGAKAPK--LVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEEEecCCCCce--ehhHHHHHhcCCCcEEEEE
Confidence 665543333344 6888999999999999875
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=1.2 Score=39.54 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~ 202 (272)
.++..|||.=||+|...... .+.+.+..++|+++...+.|.+++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa-~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAA-LQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHH-HHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 46779999999999999965 57788999999999999999988753
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.99 E-value=4 Score=38.31 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CC-CC-CCCCC-Cc
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QD-FTPET-GR 230 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~-~~-~~~~~-~~ 230 (272)
+..+|+=+||| .|-++..++...+ ..|+++|.++.=++.|++.... ..+..... +. .. ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCCC
Confidence 44489999999 5777765643333 5888999999999999986531 11111111 10 00 01122 26
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++=.-. .. .++..+.+.++|||.+++.
T Consensus 239 ~D~vie~~G------~~--~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 239 ADVVIEAVG------SP--PALDQALEALRPGGTVVVV 268 (350)
T ss_pred CCEEEECCC------CH--HHHHHHHHHhcCCCEEEEE
Confidence 999984333 11 4888999999999988653
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.85 E-value=3 Score=36.03 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=58.9
Q ss_pred CCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-C-CCCCCcce
Q 024100 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD 232 (272)
.++.+||-.|+|. |..+..++...+.+|.+++.++...+.+++.- . ...++....+... . ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~--------~~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG-A--------DHVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC-C--------ceeccCCcCCHHHHHHHhcCCCCC
Confidence 5677999999984 77777776566789999999988887775431 0 0011111101000 0 01224799
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+.+.. .. ..+..+.+.|+++|.++..
T Consensus 204 ~vi~~~~-----~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 204 VVIDAVG-----GP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEEECCC-----CH---HHHHHHHHhcccCCEEEEE
Confidence 9885432 11 3566667888999988764
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.32 Score=44.34 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=37.7
Q ss_pred CceEEEEeCCCCC--CCCCCcceeeEechhhh----------hcChhh----HHHHHHHHHHhcccCcEEEEe
Q 024100 212 KATNFFCVPLQDF--TPETGRYDVIWVQWCIG----------HLTDDD----FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 212 ~~v~~~~~d~~~~--~~~~~~fDlIvs~~vl~----------hl~d~~----~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+..++++|..++ ..++++||+|++.=-.. .....+ +..+|.++.++|+|||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3557888888764 34457899999852210 000111 247899999999999998764
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.3 Score=35.84 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=55.1
Q ss_pred eecccchHHHHHHHhcCC---cEEEE--eCCHHHHHHHH---HhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcc
Q 024100 164 CGSGIGRITKNLLIRYFN---EVDLL--EPVSHFLDAAR---ESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRY 231 (272)
Q Consensus 164 iGcGtG~~t~~LLa~~~~---~v~~v--D~S~~mld~A~---~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f 231 (272)
||=|.=.++..|+ +.+. +++++ |...+.++... +++...+ .....-.+..|+..+.. ..+.|
T Consensus 3 vGeGdfSFs~sL~-~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-----~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 3 VGEGDFSFSLSLA-RAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-----ELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeccchHHHHHHH-HHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-----hcCCccccCCCCCcccccccccCCcC
Confidence 3444445566564 4433 55554 33333433332 3333221 11223345666665532 34689
Q ss_pred eeeEechhhhhcC-------------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLT-------------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~-------------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|+-++- |.. ..-+..||+.+.+.|+++|.|.++
T Consensus 77 DrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 77 DRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99998876 444 112457999999999999998775
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=88.24 E-value=4 Score=31.25 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=53.7
Q ss_pred cccchHHHHHHH---hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcceeeEech
Q 024100 166 SGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDVIWVQW 238 (272)
Q Consensus 166 cGtG~~t~~LLa---~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fDlIvs~~ 238 (272)
||.|.++..++. +....|.++|.+++-++.+++. .+.++.+|..+... .-.++|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 666777776643 2344899999999998888764 26788898866431 113678777654
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
- +++..-.+....+.+.|...++.
T Consensus 71 ~-----~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 71 D-----DDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp S-----SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred C-----CHHHHHHHHHHHHHHCCCCeEEE
Confidence 3 34444455556677778777664
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=87.87 E-value=5.2 Score=36.21 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+||-.||| .|..+..++...+.+|.+++.++..++.+++ +.. ...+.....+... . ..+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~--------~~~~~~~~~~~~~-~-~~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-LGA--------DEVVDSGAELDEQ-A-AAGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hCC--------cEEeccCCcchHH-h-ccCCCCE
Confidence 4566788889987 8888877765667789999999998888854 310 0011111001000 0 1236898
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.... .. ..+..+.+.|+++|.++..
T Consensus 229 vi~~~~-----~~---~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 229 ILVTVV-----SG---AAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEECCC-----cH---HHHHHHHHhcccCCEEEEE
Confidence 875422 11 3566778899999988764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.85 E-value=3.2 Score=40.18 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=68.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 229 (272)
..++.+|||..|-+|.=|.++++-. -.-+.+.|.+..-+..-.+++.+. ...+.-..+.|..+|+ ++ +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl------Gv~ntiv~n~D~~ef~~~~~~-~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL------GVTNTIVSNYDGREFPEKEFP-G 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh------CCCceEEEccCcccccccccC-c
Confidence 4677899999999998888774332 336678898888888888887654 2344455566666554 23 3
Q ss_pred cceeeE----ech--hhhh---------------cChhhHHHHHHHHHHhcccCcEEEE
Q 024100 230 RYDVIW----VQW--CIGH---------------LTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 230 ~fDlIv----s~~--vl~h---------------l~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+||=|. |+. ++.- ++.- ..++|-...+.+++||+++-
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~L-Qr~LllsAi~lv~~GGvLVY 369 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHL-QRELLLSAIDLVKAGGVLVY 369 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHH-HHHHHHHHHhhccCCcEEEE
Confidence 799887 333 1100 0000 23567777789999999863
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.82 E-value=3.6 Score=32.01 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=55.5
Q ss_pred ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-----CC-CCCcceeeEechhh
Q 024100 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TP-ETGRYDVIWVQWCI 240 (272)
Q Consensus 167 GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~~fDlIvs~~vl 240 (272)
|.|..+..++...+.+|.+++.++.-++.+++.- .-.++..+-.++ .. ....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G------------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG------------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc------------ccccccccccccccccccccccccceEEEEecC-
Confidence 5788888887667889999999999999998641 112222221111 11 1237999885433
Q ss_pred hhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 241 GHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 241 ~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.. ..++.....|+|+|.+++.
T Consensus 68 -----~~--~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 -----SG--DTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp -----SH--HHHHHHHHHEEEEEEEEEE
T ss_pred -----cH--HHHHHHHHHhccCCEEEEE
Confidence 12 5888889999999998865
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.97 E-value=1.3 Score=42.17 Aligned_cols=100 Identities=9% Similarity=-0.017 Sum_probs=55.8
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|+=+|+| .|..+...+...+.+|.++|.++.-++.+...+. ..+.....+.+++...-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g----------~~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFG----------GRIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcC----------ceeEeccCCHHHHHHHHccCCEEE
Confidence 45679999988 6777777766667789999998876666655442 111111111111110013689999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..-..---..+. -+-+++.+.++||+.+++.
T Consensus 236 ~a~~~~g~~~p~--lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 236 GAVLIPGAKAPK--LVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred EccccCCCCCCc--CcCHHHHhcCCCCCEEEEE
Confidence 653210000011 1224455667999998874
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.67 E-value=3 Score=38.84 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=49.5
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC--C-cceeeE
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVIW 235 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~fDlIv 235 (272)
.+++|+=||.|.+..-+-...+.-+.++|+++..++.-+.+.. ...+...|+.++.... . .+|+|+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~-----------~~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP-----------HGDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC-----------CCceeechHhhcChhhccccCCCEEE
Confidence 4899999999999998843345667889999999998888763 2455666666554321 1 689998
Q ss_pred ech
Q 024100 236 VQW 238 (272)
Q Consensus 236 s~~ 238 (272)
...
T Consensus 73 gGp 75 (328)
T COG0270 73 GGP 75 (328)
T ss_pred eCC
Confidence 543
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=85.64 E-value=9.3 Score=34.57 Aligned_cols=94 Identities=23% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC----CCCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~----~~~~ 228 (272)
+.++.+||-+|+| .|..+..++...+.+ +.+++.+++..+.+++ +.. . .++..+-.++ ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-~g~---------~--~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK-LGA---------T--ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCC---------e--EEecCCCCCHHHHHHhcC
Confidence 4566789999876 466777675555656 8889999988888754 210 0 1111111111 0122
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+|+|+.+.. .. ..+..+.+.|+++|.++..
T Consensus 225 ~~vd~v~~~~~------~~--~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 225 YGFDVVIEATG------VP--KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCCcEEEECCC------Ch--HHHHHHHHHHhcCCEEEEE
Confidence 46999885422 12 4677778889999998764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.45 E-value=1.1 Score=39.89 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~ 225 (272)
.-...-|.+||.|+|.+|+.++.....+..+||.+..++.-.+-.. ++ ......++..|+..+.
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~-EA------a~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLS-EA------APGKLRIHHGDVLRFK 111 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHh-hc------CCcceEEeccccceeh
Confidence 3455679999999999999998666678899998887776554322 21 2346677777775443
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.35 E-value=3.9 Score=37.46 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=47.0
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.+.+++...|+|+-+|.+|-.|. ++.-.|+.||.-+ |.. ... ....|+-...|-..|.|...+.|.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLV-kr~m~V~aVDng~-ma~---sL~---------dtg~v~h~r~DGfk~~P~r~~idW 273 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLV-KRNMRVYAVDNGP-MAQ---SLM---------DTGQVTHLREDGFKFRPTRSNIDW 273 (358)
T ss_pred hhcCCceeeecccCCCccchhhh-hcceEEEEeccch-hhh---hhh---------cccceeeeeccCcccccCCCCCce
Confidence 36678999999999999999885 8788999998543 321 111 233455555565555553445666
Q ss_pred eEech
Q 024100 234 IWVQW 238 (272)
Q Consensus 234 Ivs~~ 238 (272)
.+|..
T Consensus 274 mVCDm 278 (358)
T COG2933 274 MVCDM 278 (358)
T ss_pred EEeeh
Confidence 65543
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=84.15 E-value=2.5 Score=40.42 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=67.9
Q ss_pred CCCeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCC-ceEEEEeCCCCCCC-CCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTP-ETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~fD 232 (272)
.+.++||.=+|+|-=+...+.+ ....|++-|.|++.++..++++..- .... .+.+.+.|+..+.. ....||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N-----~~~~~~~~v~~~DAn~ll~~~~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN-----GLEDERIEVSNMDANVLLYSRQERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC-----T-SGCCEEEEES-HHHHHCHSTT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc-----cccCceEEEehhhHHHHhhhccccCC
Confidence 3458999999999666666544 2468899999999999999997431 1222 57888888876531 236899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|=.- .+. .+- .||....+.++.||++.++
T Consensus 124 ~IDlD-PfG---Sp~--pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 124 VIDLD-PFG---SPA--PFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp EEEE---SS-----H--HHHHHHHHHEEEEEEEEEE
T ss_pred EEEeC-CCC---Ccc--HhHHHHHHHhhcCCEEEEe
Confidence 97542 111 244 8999999999999999875
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.13 E-value=4.4 Score=36.46 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=56.5
Q ss_pred HHHHHhccCCCccCCCCCeeeEeecccchHHHHHHH--hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe
Q 024100 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLI--RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (272)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa--~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~ 219 (272)
|..++...-+.. ..+..++||||.|.-.+-- |+- .++-+.+|.|+++..++.|+..+..- ......+++...
T Consensus 64 laDLL~s~~g~~-~~~~i~~LDIGvGAnCIYP-liG~~eYgwrfvGseid~~sl~sA~~ii~~N----~~l~~~I~lr~q 137 (292)
T COG3129 64 LADLLASTSGQI-PGKNIRILDIGVGANCIYP-LIGVHEYGWRFVGSEIDSQSLSSAKAIISAN----PGLERAIRLRRQ 137 (292)
T ss_pred HHHHHHhcCCCC-CcCceEEEeeccCcccccc-cccceeecceeecCccCHHHHHHHHHHHHcC----cchhhheeEEec
Confidence 455554332211 2366789999988754433 432 23558899999999999998876321 112234554432
Q ss_pred CC-----CCCCCCCCcceeeEechhhhh
Q 024100 220 PL-----QDFTPETGRYDVIWVQWCIGH 242 (272)
Q Consensus 220 d~-----~~~~~~~~~fDlIvs~~vl~h 242 (272)
.- +.+.-..+.||+..|+--||-
T Consensus 138 k~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 138 KDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred cCccccccccccccceeeeEecCCCcch
Confidence 22 122112468999999998844
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=83.93 E-value=10 Score=34.88 Aligned_cols=89 Identities=13% Similarity=-0.005 Sum_probs=55.5
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+||=.|+| .|..+..++...+.+|++++.++.-++.+++. . ....++. .+. ..+.+|+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~-G--------a~~vi~~-----~~~--~~~~~d~ 226 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL-G--------AASAGGA-----YDT--PPEPLDA 226 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh-C--------Cceeccc-----ccc--CcccceE
Confidence 4567789988865 55566666544566899999888888888663 1 1111111 111 1235787
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++..-.. . ..+....+.|++||.+++
T Consensus 227 ~i~~~~~-----~---~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 227 AILFAPA-----G---GLVPPALEALDRGGVLAV 252 (329)
T ss_pred EEECCCc-----H---HHHHHHHHhhCCCcEEEE
Confidence 6533221 1 367778889999999875
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.72 E-value=5.4 Score=39.85 Aligned_cols=103 Identities=12% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCeeeEeecccchHHHHHHHh---cCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 158 HLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~---~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
...|+=+|+|-|-+....+.. ... ++.+||=+|..+-..+.+-- ..-...|+++.+|+..+..+....|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~------~~W~~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF------ECWDNRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch------hhhcCeeEEEeccccccCCchhhcc
Confidence 457788899999776655421 233 45778877766554443211 1235689999999999985546899
Q ss_pred eeEechhhhhcChhhH-HHHHHHHHHhcccCcEEEE
Q 024100 233 VIWVQWCIGHLTDDDF-VSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~-~~~l~~~~r~LkpgG~liv 267 (272)
++|+- .|+-+.|.++ .+.|.-+.+.|+|+|..|=
T Consensus 442 I~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 442 IIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 87754 4556666554 4789999999999998763
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=83.29 E-value=0.94 Score=38.36 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=31.9
Q ss_pred CcceeeEechhhhhcC-----hh----hHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLT-----DD----DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~-----d~----~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++||.+.|..+++|+. |+ .-.+.+.++++.|||||.++..
T Consensus 62 ~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 62 GSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred ccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 5899999999998872 21 2347889999999999998764
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=82.98 E-value=3.5 Score=39.61 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHh---ccccCCCCCCCCCceEEEEeCCCCCCC---
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARES---LAPENHMAPDMHKATNFFCVPLQDFTP--- 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~---l~~~~~~~~~~~~~v~~~~~d~~~~~~--- 226 (272)
+.+.....|+|.|.|.....+ +.. ...-.|++++..--+.|..+ +....+........+..+.+++.+-..
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~-aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFV-AAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred cCCCCcccCCCcccchhhHHH-HHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 567788999999999998855 333 22335555333322222211 111100001124456777777644321
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCCC
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSLI 272 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~~ 272 (272)
-....++|+++++. + |+++..=+.++...+++|-.+|-.++|.
T Consensus 269 I~~eatvi~vNN~~-F--dp~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 269 IQTEATVIFVNNVA-F--DPELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred HhhcceEEEEeccc-C--CHHHHHhhHHHHhhCCCcceEecccccc
Confidence 11368999999885 2 4665555668888999999999988874
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=5.6 Score=37.00 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=60.1
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CCCC-C-CCCCC
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~ 229 (272)
+.++.+||=.|+ |.|..+..++...+.+|.+++.++.-.+.+++.+.. ...++.... ++.+ + ....+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF--------DEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC--------CEEEECCCcccHHHHHHHHCCC
Confidence 456778988887 488888888666677899999888888877644421 112222111 1111 0 01123
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+-.-. . ..+..+.+.|++||.++..
T Consensus 228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEE
Confidence 6898874322 1 3566778889999998753
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=82.69 E-value=8.7 Score=33.65 Aligned_cols=103 Identities=14% Similarity=0.021 Sum_probs=66.0
Q ss_pred CCCeeeEeecccchHHHHHHH---hcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC----
Q 024100 157 QHLVALDCGSGIGRITKNLLI---RYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---- 227 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa---~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 227 (272)
++..|+++|.-.|..+..++. +.+ .+|.++|++-.-++.+... .+.+.|+.++-.+....
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCCCHHHHHHHH
Confidence 567899999999988875532 224 4788888887666555432 35799999887554211
Q ss_pred --CCcceee-EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCCC
Q 024100 228 --TGRYDVI-WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSLI 272 (272)
Q Consensus 228 --~~~fDlI-vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~~ 272 (272)
.+.|--| +|-.+-||. +...+-|+-+..+|.-|-++++-|+++
T Consensus 138 ~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 138 RLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred HHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccc
Confidence 1123333 344454442 223355666678889999999888753
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=82.49 E-value=6.7 Score=35.71 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+..++|=+||| .|.++..++...+.+ |.++|.++..++.|.+.. .++. .+. ....+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------------~i~~-----~~~--~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------------VLDP-----EKD--PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------------ccCh-----hhc--cCCCCCEE
Confidence 35578888876 677777775445555 566788877666664321 1110 100 12368988
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+-.-. .. ..+..+.+.|+++|.++.
T Consensus 205 id~~G------~~--~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 205 YDASG------DP--SLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred EECCC------CH--HHHHHHHHhhhcCcEEEE
Confidence 85432 12 466777889999999875
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.29 E-value=0.82 Score=44.23 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=50.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~ 224 (272)
.++..|-|+-||.|-++..+ +.....|++.|.+++|++..+.+++.- .-...++.++.+|..+|
T Consensus 248 k~gevv~D~FaGvGPfa~Pa-~kK~crV~aNDLNpesik~Lk~ni~lN----kv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPA-AKKGCRVYANDLNPESIKWLKANIKLN----KVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccch-hhcCcEEEecCCCHHHHHHHHHhcccc----ccchhheeeecccHHHH
Confidence 46678999999999999988 577799999999999999999987531 11233477887776554
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.00 E-value=0.8 Score=42.44 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=62.2
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+..|.|+=+|.|++|..++-.. ...|.++|.+|..++..++++.. +....+..++.+|-. .+-+.+..|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~-----N~V~~r~~i~~gd~R-~~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEA-----NNVMDRCRITEGDNR-NPKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHh-----cchHHHHHhhhcccc-ccCccccchhee
Confidence 34689999999999999554444 56899999999999999988742 001112222233322 222334666665
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccC-c-EEEEecC
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARS-G-TFLLSHS 270 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~Lkpg-G-~liv~E~ 270 (272)
. +-++..+ +-+--..++|+|. | ++-+.|+
T Consensus 268 L----GLlPSse--~~W~~A~k~Lk~eggsilHIHen 298 (351)
T KOG1227|consen 268 L----GLLPSSE--QGWPTAIKALKPEGGSILHIHEN 298 (351)
T ss_pred e----ccccccc--cchHHHHHHhhhcCCcEEEEecc
Confidence 3 3344444 5555566778774 4 4445554
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=81.98 E-value=16 Score=32.33 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhccCCCccCCCCCeeeEeecccc--hHHHHHH--Hhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCC
Q 024100 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIG--RITKNLL--IRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (272)
Q Consensus 137 ~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG--~~t~~LL--a~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~ 211 (272)
+...||..+... .....+++..|+.| ..|..|+ +++ +.++..|-+.+.-+...++.+... ...
T Consensus 28 ~~aEfISAlAAG-------~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~-----~~~ 95 (218)
T PF07279_consen 28 GVAEFISALAAG-------WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA-----GLS 95 (218)
T ss_pred CHHHHHHHHhcc-------ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc-----ccc
Confidence 345677766542 22347888866543 2344443 333 678888888888777777766432 123
Q ss_pred CceEEEEeCC-CCCCCCCCcceeeEechhhhhcChhhHH-HHHHHHHHhcccCcEEEEecCC
Q 024100 212 KATNFFCVPL-QDFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 212 ~~v~~~~~d~-~~~~~~~~~fDlIvs~~vl~hl~d~~~~-~~l~~~~r~LkpgG~liv~E~~ 271 (272)
..++|+.++. +++.+.-...|.++...=. .++. ++|+-+. +.|.|-+++..+.
T Consensus 96 ~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na 150 (218)
T PF07279_consen 96 DVVEFVVGEAPEEVMPGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNA 150 (218)
T ss_pred ccceEEecCCHHHHHhhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecc
Confidence 4568888774 3332222468887754432 3444 5555433 5677888887654
|
The function of this family is unknown. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=81.97 E-value=7.5 Score=36.54 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=61.3
Q ss_pred cCCCCCeeeEeecc-cchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe--CCCCC----
Q 024100 154 RNNQHLVALDCGSG-IGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQDF---- 224 (272)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~--d~~~~---- 224 (272)
+...+.+||=+||| +|-++. +.++. ..+|.++|+++.-++.|++ +.. ..+..... +.+++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~-l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga---------~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTG-LVAKAMGASDVVITDLVANRLELAKK-FGA---------TVTDPSSHKSSPQELAELV 234 (354)
T ss_pred CcccCCeEEEECCcHHHHHHH-HHHHHcCCCcEEEeecCHHHHHHHHH-hCC---------eEEeeccccccHHHHHHHH
Confidence 46678899999999 566666 44565 4599999999999999998 532 11111111 01111
Q ss_pred --CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 225 --TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 225 --~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
......+|+.+...-+ + ..++.....+++||.++...
T Consensus 235 ~~~~g~~~~d~~~dCsG~-~-------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGA-E-------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HhhccccCCCeEEEccCc-h-------HHHHHHHHHhccCCEEEEec
Confidence 0112347887755443 1 45555677899999976653
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.48 E-value=4.4 Score=38.57 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=68.8
Q ss_pred CCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-CCcceeeE
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fDlIv 235 (272)
+.+|||-=+|||.=++.++..... .|++-|+||..++..++++.. ....+...+..|...+... ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~------N~~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRL------NSGEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHh------cCcccceeecchHHHHHHhcCCCccEEe
Confidence 568999999999777777544444 789999999999999999853 1133455555666554322 24677753
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.- . +..+- .|+....+.++.||++-++
T Consensus 127 iD-P---FGSPa--PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 127 ID-P---FGSPA--PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred cC-C---CCCCc--hHHHHHHHHhhcCCEEEEE
Confidence 31 1 11244 7888889999999998664
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=81.13 E-value=1.2 Score=39.51 Aligned_cols=20 Identities=0% Similarity=0.011 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcccCcEEEE
Q 024100 248 FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 248 ~~~~l~~~~r~LkpgG~liv 267 (272)
+..++.+++|+|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 35789999999999998875
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=80.95 E-value=4.5 Score=36.52 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=47.6
Q ss_pred eeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-C-cceeeEe
Q 024100 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-G-RYDVIWV 236 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~-~fDlIvs 236 (272)
+++|+=||.|.++..|- +. +.-+.++|.++...+.-+.++ + .....|+.++.... . .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~-~ag~~~~~a~e~~~~a~~~y~~N~-----------~--~~~~~Di~~~~~~~l~~~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLE-QAGFEVVWAVEIDPDACETYKANF-----------P--EVICGDITEIDPSDLPKDVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHH-HTTEEEEEEEESSHHHHHHHHHHH-----------T--EEEESHGGGCHHHHHHHT-SEEEE
T ss_pred cEEEEccCccHHHHHHH-hcCcEEEEEeecCHHHHHhhhhcc-----------c--ccccccccccccccccccceEEEe
Confidence 69999999999999884 54 567788999999999998886 1 77788888775221 1 5999984
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=80.52 E-value=15 Score=32.25 Aligned_cols=93 Identities=16% Similarity=0.050 Sum_probs=55.8
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++.++|=.|||. |..+..++...+.+ |.+++.+++..+.+++. ... ...+... +... ....+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~-g~~-------~~~~~~~----~~~~-~~~~~d 161 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL-GPA-------DPVAADT----ADEI-GGRGAD 161 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc-CCC-------ccccccc----hhhh-cCCCCC
Confidence 45667888888764 66777665455667 99999888888877653 100 0001100 0111 224689
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+..-.- . ..+....+.|+++|.++..
T Consensus 162 ~vl~~~~~------~--~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASGS------P--SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccCC------h--HHHHHHHHHhcCCcEEEEE
Confidence 88753221 1 3566677889999988753
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.45 E-value=19 Score=33.10 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=57.1
Q ss_pred CeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHh--ccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 159 ~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~--l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+|+=+||| .|.+....|++.+..|++++-+++.++.-++. +... .......+ ........ ..+.||+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~-----~~g~~~~~-~~~~~~~~-~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV-----EQGQASLY-AIPAETAD-AAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe-----eCCcceee-ccCCCCcc-cccccCEEE
Confidence 368889988 56555545578888999999887666655542 2100 00111111 11111111 124799988
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
..-=-++ ...+++.+...+.++..++...
T Consensus 76 v~vK~~~-----~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 76 LACKAYD-----AEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred EECCHHh-----HHHHHHHHHhhCCCCCEEEEEe
Confidence 6532222 3378889999999998776543
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=80.32 E-value=6.2 Score=36.84 Aligned_cols=97 Identities=18% Similarity=0.025 Sum_probs=56.1
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-CC-CCCCCc
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DF-TPETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~~-~~~~~~ 230 (272)
+.+..+||=.|+| .|..+..++...+. .|.+++.++.-++.+++ +.. ...++....++. .+ ....+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~-~Ga--------~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-LGA--------TATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-cCC--------ceEeCCCchhHHHHHHHHhCCC
Confidence 4556778888876 46666666544555 69999999998888865 311 111111111110 01 011225
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+|+-.-. + . ..+....+.|+++|.++..
T Consensus 260 ~d~vid~~G--~---~---~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 260 VDYAFEMAG--S---V---PALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCEEEECCC--C---h---HHHHHHHHHHhcCCEEEEE
Confidence 898875322 1 1 3566677889999988753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=80.29 E-value=7.9 Score=35.26 Aligned_cols=96 Identities=20% Similarity=0.130 Sum_probs=60.1
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CCCCCCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~~~~~~~ 229 (272)
+.++.+||-.|+|. |..+..++...+.+|+++..+++..+..++ +. ....+.....++ .... ...
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~-~g--------~~~v~~~~~~~~~~~l~~~~-~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE-LG--------ADDTINVGDEDVAARLRELT-DGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH-hC--------CCEEecCcccCHHHHHHHHh-CCC
Confidence 45677899998773 777777866668889999888888887754 21 011112111111 1111 223
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+.... .. ..+..+.+.|+++|.++..
T Consensus 227 ~vd~vld~~g------~~--~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 227 GADVVIDATG------NP--ASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCEEEECCC------CH--HHHHHHHHHHhcCCEEEEE
Confidence 5899886532 11 4567788899999988754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 272 | ||||
| 2ex4_A | 241 | Crystal Structure Of Human Methyltransferase Ad-003 | 9e-36 | ||
| 1xtp_A | 254 | Structural Analysis Of Leishmania Major Lmaj004091a | 4e-32 |
| >pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241 | Back alignment and structure |
|
| >pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 186 bits (472), Expect = 2e-58
Identities = 74/211 (35%), Positives = 111/211 (52%), Gaps = 18/211 (8%)
Query: 61 PKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASV 120
K S + +SG D++GK +++ +EMW+ ++ G+ + + WY + + YW V A+V
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAEL--TGDLYDPEKGWYGKALEYWRTVPATV 64
Query: 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180
GVLGG +V++VDI+GS F+ L A LDCG+GIGRITKNLL + +
Sbjct: 65 SGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA--------LDCGAGIGRITKNLLTKLY 116
Query: 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240
DLLEPV H L+ A+ LA F ++ T YD+I +QW
Sbjct: 117 ATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETATLPPNTYDLIVIQWTA 168
Query: 241 GHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
+LTD DFV FFK ++ + +G +
Sbjct: 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENC 199
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-50
Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 9/176 (5%)
Query: 93 GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
G E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 18 GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 77
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
+ LDCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 78 TGTSCA---LDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG------KR 128
Query: 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268
N+FC LQDFTPE YDVIW+QW IGHLTD F +R K ++ +G ++
Sbjct: 129 VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK 184
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-07
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 3/109 (2%)
Query: 162 LDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
+D G G G + +LL + ++ L A + L + + K+ +
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG 785
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268
+ +F D+ I H+ +D F ++ + ++S
Sbjct: 786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLS-LFHPKLLIVS 833
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 7e-07
Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 20/130 (15%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L L + A+ L+ G G G + +L F +VD + A
Sbjct: 31 SATLTKFLGELPAGAK------ILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASR 83
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKEN 258
+ YD +W C+ H+ D+ K
Sbjct: 84 ------------RLGRPVRTMLFHQL-DAIDAYDAVWAHACLLHVPRDELADVLKLIWRA 130
Query: 259 IARSGTFLLS 268
+ G F S
Sbjct: 131 LKPGGLFYAS 140
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ +G+GR+T L + EV LE + L A R+ LA D+ +
Sbjct: 87 LELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAP---ADVRDRCTLVQGDM 142
Query: 222 QDFTPETGRYD-VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267
F + R+ V+ I L + D + +E++ G FLL
Sbjct: 143 SAFALD-KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-06
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + L + +VD + + + + EN + V
Sbjct: 36 TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVD 88
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268
L + T + +YD I + L + G L+
Sbjct: 89 LNNLTFD-RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 135
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 8e-06
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + LL + F ++ ++ L+ A++ L + + K + F
Sbjct: 34 IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRISLFQSS 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269
L YD V I HL ++ +F K E R T ++S
Sbjct: 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFE-FTRPQTVIVST 140
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-05
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + K LL +F ++ ++ L+ A+E L +
Sbjct: 34 IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ-LIQGA 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268
L YD V I HL +F + E A+ +++
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFE-FAQPKIVIVT 139
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD GSG GR T +L +++ LEP + ++ AR++ H + F
Sbjct: 45 ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT-----------HPSVTFHHGT 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268
+ D + R+ + + + H+ + + + G L+S
Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMS 140
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 39/217 (17%), Positives = 65/217 (29%), Gaps = 22/217 (10%)
Query: 57 AAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV 116
A K E E L G + + ++ E + W G
Sbjct: 138 AGDKNKGFERYFKEARALLGYGVVVRREGPYRVALLEKEKEAPPLPSLWRAFSARI-LGA 196
Query: 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL 176
E + + G F +VD S L+ L P + ++ L G G + L
Sbjct: 197 EYTFHHLPGVFSA-GKVDP-ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLP---L 251
Query: 177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236
R EV +E + + ++ L N + + + E R+D+I
Sbjct: 252 ARMGAEVVGVEDDLASVLSLQKGLE-ANALKAQALHSDVDEAL------TEEARFDII-- 302
Query: 237 QWC-----IGHLTDDDFV-SFFKRAKENIARSGTFLL 267
+G D +F A + G F L
Sbjct: 303 -VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-05
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + Y + + V D S+A N + +
Sbjct: 124 VLDLGCGQGRNS-----LYLSLLGY--DV-TSWDHNENSIAFLNETKEKENLNISTALYD 175
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267
+ + YD I L + S K KE+ G L+
Sbjct: 176 INAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI 221
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 7e-05
Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 16/139 (11%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
+VD K F+ + + LD G G +T+ L F ++
Sbjct: 16 ADVDYKKWSDFIIEKCVENNLVFDD-----YLDLACGTGNLTE-NLCPKFKNTWAVDLSQ 69
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC-IGHLTD-DDF 248
L A + C + + ++D+I ++ D DD
Sbjct: 70 EMLSEAENKFRSQGLKP-------RLACQDISNL-NINRKFDLITCCLDSTNYIIDSDDL 121
Query: 249 VSFFKRAKENIARSGTFLL 267
+FK ++ G F+
Sbjct: 122 KKYFKAVSNHLKEGGVFIF 140
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 19/130 (14%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L+ L + L+ SG G T++L V L+ + + A
Sbjct: 35 PAALERLRAGN-IRGD------VLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR 86
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKEN 258
F L D+TP+ ++D ++ + H+ DD F +F++ +
Sbjct: 87 HGLD----------NVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVRSA 135
Query: 259 IARSGTFLLS 268
+A G
Sbjct: 136 VAPGGVVEFV 145
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 12/108 (11%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G T L EV L+ L AR A + + F +
Sbjct: 46 LDLACGTGIPTL-ELAERGYEVVGLDLHEEMLRVARRK-------AKERNLKIEFLQGDV 97
Query: 222 QDFTPETGRYDVIWVQWC--IGHLTDDDFVSFFKRAKENIARSGTFLL 267
+ + +D + + I + ++D F + E + G F+
Sbjct: 98 LEIAFK-NEFDAV-TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 20/137 (14%)
Query: 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHF 192
D + + L+ R P A + LD G G ++ + + LE
Sbjct: 21 KDYAAEASDIADLVRSRTPEASS-----LLDVACGTGTHLEHFTKEFG-DTAGLELSEDM 74
Query: 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVS 250
L AR+ L DM +DF ++ + + +G+L T ++ +
Sbjct: 75 LTHARKRLPDATLHQGDM-----------RDFRLG-RKFSAVVSMFSSVGYLKTTEELGA 122
Query: 251 FFKRAKENIARSGTFLL 267
E++ G ++
Sbjct: 123 AVASFAEHLEPGGVVVV 139
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 162 LDCGSGIGRITKNLL-------IRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMH 211
L G G G I +L +++EP + + +E +A +++ H
Sbjct: 57 LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWH 116
Query: 212 KATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269
K T+ E ++D I + + ++ D + K + + L+
Sbjct: 117 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIV 172
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 8e-04
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 10/109 (9%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L G GR L + EV +D + LA +A +
Sbjct: 33 ILCLAEGEGRNACFLASLGY-EV-------TAVDQSSVGLAKAKQLAQEKGVKITTVQSN 84
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269
L DF ++ I +C HL + + + + G F+L
Sbjct: 85 LADFDIVADAWEGIVSIFC--HLPSSLRQQLYPKVYQGLKPGGVFILEG 131
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 8e-04
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFL 193
D A L L+ P A + LD G G ++L + V+ LE + L
Sbjct: 32 DYHREAADLAALVRRHSPKAAS-----LLDVACGTGMHLRHLADSFG-TVEGLELSADML 85
Query: 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVSF 251
AR DM +DF+ R+ + + IGHL + +
Sbjct: 86 AIARRRNPDAVLHHGDM-----------RDFSLG-RRFSAVTCMFSSIGHLAGQAELDAA 133
Query: 252 FKRAKENIARSGTFLL 267
+R ++ G ++
Sbjct: 134 LERFAAHVLPDGVVVV 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 272 | |||
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.94 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.9 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.83 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.8 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.8 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.79 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.79 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.79 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.79 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.79 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.79 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.78 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.78 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.77 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.77 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.77 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.77 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.77 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.77 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.76 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.76 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.76 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.76 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.75 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.75 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.75 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.75 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.74 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.74 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.74 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.74 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.74 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.74 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.74 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.73 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.73 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.73 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.73 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.73 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.73 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.72 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.72 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.72 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.72 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.72 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.72 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.72 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.71 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.71 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.71 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.71 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.71 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.7 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.7 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.7 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.7 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.7 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.69 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.69 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.69 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.68 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.68 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.68 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.68 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.67 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.67 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.67 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.67 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.67 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.66 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.66 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.65 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.65 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.64 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.63 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.63 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.63 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.62 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.62 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.62 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.61 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.61 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.61 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.6 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.6 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.59 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.59 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.59 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.59 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.58 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.58 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.58 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.58 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.58 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.57 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.56 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.56 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.55 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.55 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.55 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.55 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.55 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.55 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.55 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.55 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.54 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.54 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.54 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.54 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.53 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.53 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.53 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.53 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.53 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.53 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.53 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.53 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.52 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.52 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.52 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.52 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.52 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.52 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.52 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.52 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.51 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.51 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.5 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.5 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.5 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.5 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.5 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.49 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.49 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.49 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.48 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.48 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.48 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.48 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.48 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.48 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.48 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.48 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.48 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.47 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.47 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.47 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.47 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.47 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.46 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.46 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.46 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.46 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.45 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.45 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.45 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.44 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.44 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.44 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.44 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.44 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.44 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.43 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.43 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.43 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.42 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.42 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.42 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.42 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.42 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.41 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.41 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.41 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.41 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.41 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.41 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.4 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.4 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.4 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.4 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.4 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.39 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.39 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.39 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.38 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.38 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.36 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.36 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.36 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.36 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.35 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.35 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.35 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.35 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.35 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.34 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.34 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.34 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.34 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.34 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.33 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.33 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.33 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.33 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.32 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.32 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.31 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.31 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.31 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.31 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.31 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.3 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.29 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.28 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.27 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.26 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.26 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.26 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.25 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.24 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.23 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.23 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.23 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.22 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.21 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.19 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.18 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.18 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.18 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.17 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.17 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.15 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.13 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.13 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.12 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.11 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.11 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.11 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.1 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.1 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.09 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.09 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.08 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.06 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.06 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.02 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.99 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.97 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.95 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.93 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.91 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.9 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.89 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.82 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.78 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.76 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.74 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.73 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.71 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.71 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.69 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.68 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.67 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.64 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.63 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.6 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.59 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.59 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.57 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.54 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.53 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.52 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.47 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.45 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.43 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.35 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.32 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.18 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.17 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.13 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.13 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.12 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.02 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.02 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.99 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.99 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.91 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.8 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.76 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.69 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.69 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.34 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.05 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.92 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.79 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.47 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.39 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.33 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.31 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.94 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.91 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.85 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.56 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.98 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.39 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.22 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.21 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.2 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.18 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.79 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.72 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.63 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 93.43 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.21 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.14 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.12 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.02 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 92.93 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.91 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.9 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.84 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.79 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.72 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.62 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.46 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.25 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.86 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.73 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.39 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.34 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.21 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.12 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.91 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 90.82 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.71 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 90.5 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.5 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.2 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 89.94 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 89.89 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 89.89 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 89.87 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 89.78 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 89.73 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 89.73 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 89.71 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 89.52 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 89.45 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.35 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.32 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 89.15 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 89.01 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 88.95 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 88.82 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 88.56 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 88.56 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 88.37 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 88.37 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 88.14 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 88.1 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 87.83 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 87.8 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.72 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 87.55 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 87.42 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 87.22 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 87.02 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 87.01 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 86.89 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 86.53 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 86.5 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 86.43 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 86.28 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 86.12 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 86.11 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 86.05 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 85.93 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 85.69 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 85.58 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 85.52 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 85.41 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 84.81 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 84.79 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 84.6 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 84.52 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 84.39 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 83.87 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 83.4 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 83.4 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 83.11 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 83.11 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 82.78 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 82.56 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 81.21 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 80.82 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 80.74 |
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-27 Score=204.11 Aligned_cols=187 Identities=39% Similarity=0.758 Sum_probs=151.3
Q ss_pred CCceeecccCCCCcccCCHHHHHHHHhcccccchhhhhHHHHHHHhhhhcchhhhhccccCCCCCcchhhhhHHHHHHHH
Q 024100 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (272)
Q Consensus 66 ~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~~~~~~~~~~~y~~~~~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L~~l 145 (272)
+..+.+.|.|++|+.|.+++++|++.+..... .....||....+||+.....++++++++...+..+......++..+
T Consensus 12 ~~~~~~~g~d~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 89 (254)
T 1xtp_A 12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASL 89 (254)
T ss_dssp -CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTS
T ss_pred cccccccccCCCCcccccHHHHHHHHHhcccc--ccchhhhhhhhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhh
Confidence 45678999999999999999999998765322 1223599999999999998888888887765544444333333322
Q ss_pred HhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC
Q 024100 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 146 l~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~ 225 (272)
...++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++.. ..+++++++|+.+++
T Consensus 90 --------~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 90 --------PGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETAT 153 (254)
T ss_dssp --------TTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGCC
T ss_pred --------cccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEccHHHCC
Confidence 1346779999999999999988644466799999999999999998742 257999999999887
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+++++||+|++.++++|+++++...+|+++.++|+|||.+++.+.
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 766799999999999999887788999999999999999998764
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=182.58 Aligned_cols=160 Identities=43% Similarity=0.866 Sum_probs=131.9
Q ss_pred hhHHHHHHHhhhhcchhhhhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC
Q 024100 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (272)
Q Consensus 102 ~~~~y~~~~~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~ 181 (272)
...||+...+||+.....+++++++|..++..+......++..++.... ...++.+|||+|||+|.++..++.....
T Consensus 27 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 103 (241)
T 2ex4_A 27 EKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGP---NKTGTSCALDCGAGIGRITKRLLLPLFR 103 (241)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred cchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhcc---cCCCCCEEEEECCCCCHHHHHHHHhcCC
Confidence 4579999999999999988889888887777777777777777655321 1235779999999999999987544456
Q ss_pred cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhccc
Q 024100 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIAR 261 (272)
Q Consensus 182 ~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkp 261 (272)
+|+++|+|+.|++.|++++... ...+++++++|+.++++++++||+|++.++++|++++++..+|+++.++|+|
T Consensus 104 ~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 177 (241)
T 2ex4_A 104 EVDMVDITEDFLVQAKTYLGEE------GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP 177 (241)
T ss_dssp EEEEEESCHHHHHHHHHHTGGG------GGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred EEEEEeCCHHHHHHHHHHhhhc------CCceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999987431 1347899999998887766789999999999999998888999999999999
Q ss_pred CcEEEEecC
Q 024100 262 SGTFLLSHS 270 (272)
Q Consensus 262 gG~liv~E~ 270 (272)
||.+++.+.
T Consensus 178 gG~l~i~~~ 186 (241)
T 2ex4_A 178 NGIIVIKDN 186 (241)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEc
Confidence 999998763
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=165.54 Aligned_cols=118 Identities=12% Similarity=0.242 Sum_probs=97.9
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC----CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~----~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~ 215 (272)
..+..++.+.+ .++.+|||+|||+|.++..|+ +.+ .+|++||+|+.||+.|++++... ....+++
T Consensus 58 ~~i~~l~~~~~-----~~~~~vLDlGcGtG~~~~~la-~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~-----~~~~~v~ 126 (261)
T 4gek_A 58 SMIGMLAERFV-----QPGTQVYDLGCSLGAATLSVR-RNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----KAPTPVD 126 (261)
T ss_dssp HHHHHHHHHHC-----CTTCEEEEETCTTTHHHHHHH-HTCCSSSCEEEEEESCHHHHHHHHHHHHTS-----CCSSCEE
T ss_pred HHHHHHHHHhC-----CCCCEEEEEeCCCCHHHHHHH-HhcCCCCCEEEEEECCHHHHHHHHHHHHhh-----ccCceEE
Confidence 33444544433 467899999999999999885 543 37999999999999999987543 2345899
Q ss_pred EEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 216 FFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 216 ~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+++|+.+++++ +||+|++++++||+++++...+|++++++|+|||.+++.|.
T Consensus 127 ~~~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 127 VIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp EEESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Eeeccccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 999999998764 69999999999999998888999999999999999998874
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-19 Score=151.72 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=91.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+++++|+|+.|++.|++++. .+++++++|+.+++++ ++||+|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~~~~~~~-~~fD~v~~ 112 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKL-LLAGRTVYGIEPSREMRMIAKEKLP----------KEFSITEGDFLSFEVP-TSIDTIVS 112 (220)
T ss_dssp CCSEEEEECCTTSHHHHHH-HHTTCEEEEECSCHHHHHHHHHHSC----------TTCCEESCCSSSCCCC-SCCSEEEE
T ss_pred CCCeEEEeCCCCCHHHHHH-HhCCCeEEEEeCCHHHHHHHHHhCC----------CceEEEeCChhhcCCC-CCeEEEEE
Confidence 5679999999999999988 4668899999999999999999862 4789999999998776 79999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+.+++|+++++...+|+++.++|+|||.+++.+.
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 9999999999866699999999999999998753
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=154.68 Aligned_cols=109 Identities=10% Similarity=-0.000 Sum_probs=89.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC---C---CCCCCceEEEEeCCCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---A---PDMHKATNFFCVPLQDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~---~---~~~~~~v~~~~~d~~~~~~~~ 228 (272)
+.++.+|||+|||+|..+..| ++.+.+|++||+|+.|++.|+++....... . .....+++|+++|+.++++.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~l-a~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWL-SGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHH-HHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred cCCCCEEEEeCCCCcHhHHHH-HHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 346779999999999999988 566779999999999999999885320000 0 001357999999999987654
Q ss_pred -CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcE
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGT 264 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~ 264 (272)
++||+|++..+++|+++++...++++++++|+|||.
T Consensus 99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 135 (203)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 689999999999999988878899999999999998
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=149.99 Aligned_cols=100 Identities=22% Similarity=0.382 Sum_probs=89.8
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|+++. .+++++++|+.++++++++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHL-ASLGHQIEGLEPATRLVELARQTH-----------PSVTFHHGTITDLSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHH-HHTTCCEEEECCCHHHHHHHHHHC-----------TTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHH-HhcCCeEEEEeCCHHHHHHHHHhC-----------CCCeEEeCcccccccCCCCeEEEEeh
Confidence 569999999999999988 466779999999999999999874 36899999999887777899999999
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+++|++..+...+|+++.++|+|||.+++..
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 141 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSF 141 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999986677799999999999999998764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=154.18 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=90.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.++++. ...+++++++|+.++++++++||+|+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~~~d~~~~~~~~~~fD~v~ 121 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKL-SRTGYKAVGVDISEVMIQKGKERG---------EGPDLSFIKGDLSSLPFENEQFEAIM 121 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHTTT---------CBTTEEEEECBTTBCSSCTTCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHH-HHcCCeEEEEECCHHHHHHHHhhc---------ccCCceEEEcchhcCCCCCCCccEEE
Confidence 35679999999999999988 466889999999999999999875 24589999999999887778999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+++|+++.. .+++++.++|+|||.+++.+
T Consensus 122 ~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 122 AINSLEWTEEPL--RALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp EESCTTSSSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EcChHhhccCHH--HHHHHHHHHhCCCeEEEEEE
Confidence 999999997776 99999999999999998765
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=159.88 Aligned_cols=96 Identities=21% Similarity=0.332 Sum_probs=84.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
...+|||||||+|.++..| ++.+.+|++||+|+.|++.|++ .+++++.++|++++++++++||+|++
T Consensus 39 ~~~~vLDvGcGtG~~~~~l-~~~~~~v~gvD~s~~ml~~a~~------------~~~v~~~~~~~e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGL-AEFFERVHAVDPGEAQIRQALR------------HPRVTYAVAPAEDTGLPPASVDVAIA 105 (257)
T ss_dssp CSSEEEEESCTTTTTHHHH-HTTCSEEEEEESCHHHHHTCCC------------CTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHH-HHhCCEEEEEeCcHHhhhhhhh------------cCCceeehhhhhhhcccCCcccEEEE
Confidence 4568999999999999977 6889999999999999987753 25799999999999988899999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..++||++ .+ +++++++|+|||||.|++.
T Consensus 106 ~~~~h~~~-~~--~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 106 AQAMHWFD-LD--RFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp CSCCTTCC-HH--HHHHHHHHHEEEEEEEEEE
T ss_pred eeehhHhh-HH--HHHHHHHHHcCCCCEEEEE
Confidence 99998874 44 7999999999999998764
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-19 Score=155.18 Aligned_cols=106 Identities=16% Similarity=0.289 Sum_probs=92.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ...++.|.++|++++++++++||+|
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~~v~~~~~d~~~l~~~~~~fD~V 107 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAF-APFVKKVVAFDLTEDILKVARAFIEGN------GHQQVEYVQGDAEQMPFTDERFHIV 107 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHH-GGGSSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHH-HHhCCEEEEEeCCHHHHHHHHHHHHhc------CCCceEEEEecHHhCCCCCCCEEEE
Confidence 346779999999999999977 577789999999999999999887432 2357999999999988777899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.++||++|+. .+|++++++|+|||.+++.+
T Consensus 108 ~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 108 TCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EEhhhhHhcCCHH--HHHHHHHHHcCCCCEEEEEE
Confidence 9999999998876 99999999999999998864
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=152.47 Aligned_cols=99 Identities=23% Similarity=0.346 Sum_probs=88.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||||||+|.++..+ ++.+.+|+++|+|+.|++.|+++.. . +++++++|++++. ++++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~~~---------~-~v~~~~~d~~~~~-~~~~fD~v~~ 109 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRL-QEHFNDITCVEASEEAISHAQGRLK---------D-GITYIHSRFEDAQ-LPRRYDNIVL 109 (250)
T ss_dssp CSSCEEEESCTTSHHHHHH-TTTCSCEEEEESCHHHHHHHHHHSC---------S-CEEEEESCGGGCC-CSSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHH-HHhCCcEEEEeCCHHHHHHHHHhhh---------C-CeEEEEccHHHcC-cCCcccEEEE
Confidence 5568999999999999977 5778899999999999999999862 1 7899999998874 4579999999
Q ss_pred chhhhhcChhhHHHHHHHHH-HhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAK-ENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~-r~LkpgG~liv~E 269 (272)
..+++|+++++ .+|++++ ++|+|||.+++.+
T Consensus 110 ~~~l~~~~~~~--~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 110 THVLEHIDDPV--ALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp ESCGGGCSSHH--HHHHHHHHTTEEEEEEEEEEE
T ss_pred hhHHHhhcCHH--HHHHHHHHHhcCCCCEEEEEc
Confidence 99999998876 9999999 9999999998765
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=154.71 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=93.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++... ....+++++++|+.++++++++||+|
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~fD~v 154 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA-----GLADNITVKYGSFLEIPCEDNSYDFI 154 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH-----TCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEEcCcccCCCCCCCEeEE
Confidence 4567899999999999999885444669999999999999999886432 12357999999999988777899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+++.. .+|++++++|+|||.+++.+
T Consensus 155 ~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 155 WSQDAFLHSPDKL--KVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EecchhhhcCCHH--HHHHHHHHHcCCCeEEEEEE
Confidence 9999999998865 99999999999999998875
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=154.93 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=90.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccC------CCCC-----CCCCceEEEEeCCCCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN------HMAP-----DMHKATNFFCVPLQDF 224 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~------~~~~-----~~~~~v~~~~~d~~~~ 224 (272)
.++.+|||+|||+|+.+..| ++.+.+|++||+|+.||+.|+++..... .... ....+++|+++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~L-a~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWF-ADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHH-HHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHH-HHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 35679999999999999977 5778899999999999999987653100 0000 0135799999999998
Q ss_pred CCCC-CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 225 TPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 225 ~~~~-~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++.+ ++||+|++..+|+|+++++...+++++.++|+|||.+++
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 7653 799999999999999988888999999999999999853
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=148.07 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=90.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..++ +.+.+|+++|+|+.|++.|++. ...+++++++|+.++ +++++||+|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~v~~~D~s~~~~~~a~~~----------~~~~~~~~~~d~~~~-~~~~~~D~v 111 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLS-GLADRVTALDGSAEMIAEAGRH----------GLDNVEFRQQDLFDW-TPDRQWDAV 111 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHH-HHSSEEEEEESCHHHHHHHGGG----------CCTTEEEEECCTTSC-CCSSCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHH-hcCCeEEEEeCCHHHHHHHHhc----------CCCCeEEEecccccC-CCCCceeEE
Confidence 3456799999999999999884 6678999999999999999872 235799999999988 456799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.+++|++++++..+|+++.++|+|||.+++.+
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999999999877899999999999999998875
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=152.21 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=93.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++... ....++++.++|+.++++++++||+|
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~fD~v 133 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAA-----GLANRVTFSYADAMDLPFEDASFDAV 133 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEECccccCCCCCCCccEE
Confidence 4577899999999999999886445779999999999999999987532 12347999999999988777899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+++.. .+|+++.++|+|||.+++.+
T Consensus 134 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 134 WALESLHHMPDRG--RALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp EEESCTTTSSCHH--HHHHHHHTTEEEEEEEEEEE
T ss_pred EEechhhhCCCHH--HHHHHHHHHcCCCeEEEEEE
Confidence 9999999998776 99999999999999998875
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=148.47 Aligned_cols=99 Identities=18% Similarity=0.324 Sum_probs=88.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++ ++.+.++|+.+++ .+++||+|+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~d~~~~~-~~~~fD~v~ 107 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAM-LAAGFDVDATDGSPELAAEASRRL------------GRPVRTMLFHQLD-AIDAYDAVW 107 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHH------------TSCCEECCGGGCC-CCSCEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHH-HHcCCeEEEECCCHHHHHHHHHhc------------CCceEEeeeccCC-CCCcEEEEE
Confidence 45779999999999999988 466789999999999999999875 4677889998887 557999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.+++|+++++...+|+++.++|+|||.+++.
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 108 AHACLLHVPRDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999999999777889999999999999999876
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=150.49 Aligned_cols=105 Identities=21% Similarity=0.364 Sum_probs=93.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++..++ +. ..+++++|+|+.|++.|++++.. ..+++++++|+.+++++ ++||+
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~~~-~~fD~ 112 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLM-EKYPEATFTLVDMSEKMLEIAKNRFRG--------NLKVKYIEADYSKYDFE-EKYDM 112 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHH-HHCTTCEEEEEESCHHHHHHHHHHTCS--------CTTEEEEESCTTTCCCC-SCEEE
T ss_pred CCCCeEEEecCCCCHHHHHHH-HhCCCCeEEEEECCHHHHHHHHHhhcc--------CCCEEEEeCchhccCCC-CCceE
Confidence 466899999999999999885 65 55999999999999999998743 23899999999998876 79999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+++.+++|+++++...++++++++|+|||.+++.+.
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999988877899999999999999998763
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=145.05 Aligned_cols=104 Identities=13% Similarity=0.219 Sum_probs=91.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++.. ..+++++++|+.+++ ++++||+|+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~-~~~~fD~v~ 119 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKL-APHCKRLTVIDVMPRAIGRACQRTKR--------WSHISWAATDILQFS-TAELFDLIV 119 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHH-GGGEEEEEEEESCHHHHHHHHHHTTT--------CSSEEEEECCTTTCC-CSCCEEEEE
T ss_pred CCCCcEEEEcCCCCHHHHHH-HHcCCEEEEEECCHHHHHHHHHhccc--------CCCeEEEEcchhhCC-CCCCccEEE
Confidence 45679999999999999977 57778999999999999999998742 348999999999987 457999999
Q ss_pred echhhhhcCh-hhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTD-DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+++|+++ +++..+|+++.++|+|||.+++..
T Consensus 120 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 120 VAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp EESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999997 455689999999999999998753
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=149.39 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=94.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|.++..++.....+|+++|+|+.|++.|+++... ..+++++++|+.++++++++||+|
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG--------NNKIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS--------CTTEEEEECCTTTCCCCTTCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc--------CCCeEEEECccccCCCCCCcEEEE
Confidence 567789999999999999988544477999999999999999998742 168999999999988777899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|++.++...+|+++.++|+|||.+++.+
T Consensus 125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 125 YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999999977777799999999999999998875
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-18 Score=150.41 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=92.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|.++..++...+.+|+++|+|+.|++.|++++... ....++++.++|+.+++ ++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~---~~fD~v 133 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS-----ENLRSKRVLLAGWEQFD---EPVDRI 133 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC-----CCCSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-----CCCCCeEEEECChhhCC---CCeeEE
Confidence 5677899999999999999886466779999999999999999987532 12357999999998774 689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+++++...+|+++.++|+|||.+++.+
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999977667799999999999999998765
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=163.67 Aligned_cols=219 Identities=18% Similarity=0.182 Sum_probs=142.5
Q ss_pred CCeeEEEeccchh--HHHHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHh---ccc-cc-chhh-hhHHH
Q 024100 35 KPTLHLLHVGRRK--EKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQI---GED-GE-QQEK-KTQWY 106 (272)
Q Consensus 35 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~---~~~-~~-~~~~-~~~~y 106 (272)
...+-|+.+||+| ++++.++++|++.. ++ ++.|++.|.+++| ++..-+..- +.. .. +.+. +..|+
T Consensus 101 ~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l-~~-g~~i~~~g~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 173 (381)
T 3dmg_A 101 AYDLVVLALPAGRGTAYVQASLVAAARAL-RM-GGRLYLAGDKNKG-----FERYFKEARALLGYGVVVRREGPYRVALL 173 (381)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHHHHHE-EE-EEEEEEEEEGGGT-----HHHHHHHHHHHHSCEEEEEEETTEEEEEE
T ss_pred CCCEEEEECCcchhHHHHHHHHHHHHHhC-CC-CCEEEEEEccHHH-----HHHHHHHHHhhhccccccccccCcEEEEE
Confidence 3467788899887 67899999988743 22 7888999999999 666665542 210 00 1111 11222
Q ss_pred H------HHHhhhhcchhhhhc----cccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHH
Q 024100 107 R------EGISYWEGVEASVDG----VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL 176 (272)
Q Consensus 107 ~------~~~~YW~~~~~~~~~----~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LL 176 (272)
. .....|......+.+ +...-..++....+....++...+.+.+.. ...++.+|||+|||+|.++..++
T Consensus 174 ~~~~~~p~~~~~w~~~~~~~~g~~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~-~~~~~~~VLDlGcG~G~~~~~la 252 (381)
T 3dmg_A 174 EKEKEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGP-EGVRGRQVLDLGAGYGALTLPLA 252 (381)
T ss_dssp ECCSCCCCCCCCCEEEEEEETTEEEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCT-TTTTTCEEEEETCTTSTTHHHHH
T ss_pred EccCCCCCCccccceeeEEecCceEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcc-cCCCCCEEEEEeeeCCHHHHHHH
Confidence 1 113445433222111 000001122222222333333333322210 01356699999999999999884
Q ss_pred HhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhh---cChhhHHHHHH
Q 024100 177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH---LTDDDFVSFFK 253 (272)
Q Consensus 177 a~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~h---l~d~~~~~~l~ 253 (272)
+.+.+|+++|+|+.|++.|++++... ...++|+++|+.+..+++++||+|+++..+|| ....+...+++
T Consensus 253 -~~g~~V~gvDis~~al~~A~~n~~~~-------~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~ 324 (381)
T 3dmg_A 253 -RMGAEVVGVEDDLASVLSLQKGLEAN-------ALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVN 324 (381)
T ss_dssp -HTTCEEEEEESBHHHHHHHHHHHHHT-------TCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHH
T ss_pred -HcCCEEEEEECCHHHHHHHHHHHHHc-------CCCeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHH
Confidence 66789999999999999999987532 23489999999988765579999999999987 34455669999
Q ss_pred HHHHhcccCcEEEEec
Q 024100 254 RAKENIARSGTFLLSH 269 (272)
Q Consensus 254 ~~~r~LkpgG~liv~E 269 (272)
++.+.|+|||.++++-
T Consensus 325 ~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 325 VAAARLRPGGVFFLVS 340 (381)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhcCcCcEEEEEE
Confidence 9999999999988753
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-18 Score=144.55 Aligned_cols=112 Identities=17% Similarity=0.109 Sum_probs=91.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++..+ ++.+ .+|+++|+|+.|++.|++++...... .....+++++++|+...+...++||+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~ 105 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKIL-LKDSFFEQITGVDVSYRSLEIAQERLDRLRLP-RNQWERLQLIQGALTYQDKRFHGYDA 105 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHH-HHCTTCSEEEEEESCHHHHHHHHHHHTTCCCC-HHHHTTEEEEECCTTSCCGGGCSCSE
T ss_pred cCCCEEEEeCCCCCHHHHHH-HhhCCCCEEEEEECCHHHHHHHHHHHHHhcCC-cccCcceEEEeCCcccccccCCCcCE
Confidence 35679999999999999987 4655 49999999999999999987532100 00012799999999777665579999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++..+++|+++++...+++++.++|+|||.++...
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 999999999998878899999999999999887764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-18 Score=147.67 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=93.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ...++++.++|++++++++++||+|
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~v 91 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAF-SPYVQECIGVDATKEMVEVASSFAQEK------GVENVRFQQGTAESLPFPDDSFDII 91 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHH-GGGSSEEEEEESCHHHHHHHHHHHHHH------TCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred cCCCCEEEEEccCcCHHHHHH-HHhCCEEEEEECCHHHHHHHHHHHHHc------CCCCeEEEecccccCCCCCCcEEEE
Confidence 457789999999999999977 577889999999999999999887432 2347999999999988777899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+++.. .+|+++.++|+|||.+++.+
T Consensus 92 ~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 92 TCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EECCchhhccCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 9999999998766 99999999999999998865
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=149.91 Aligned_cols=107 Identities=13% Similarity=0.048 Sum_probs=92.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++... ....+++|.++|+.++++ +++||+|
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~-~~~fD~V 107 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL-----GVSERVHFIHNDAAGYVA-NEKCDVA 107 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEESCCTTCCC-SSCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEECChHhCCc-CCCCCEE
Confidence 4567899999999999999885444669999999999999999987532 123579999999999876 6799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+++.. .+|++++++|+|||.+++.+
T Consensus 108 ~~~~~~~~~~~~~--~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 108 ACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp EEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEE
T ss_pred EECCChHhcCCHH--HHHHHHHHHcCCCeEEEEec
Confidence 9999999998776 99999999999999998875
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-18 Score=147.50 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=90.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..++ +.+. +|+++|+|+.|++.|++++. ..+++++++|+.++++++++||+|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAA-EHGAKKVLGIDLSERMLTEAKRKTT---------SPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHCC---------CTTEEEEECCGGGCCCCTTCEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHH-HcCCCEEEEEECCHHHHHHHHHhhc---------cCCeEEEEcchhhCCCCCCCeEEE
Confidence 467899999999999999884 6666 99999999999999999863 358999999999888767899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++..+++|+.+.. .+|++++++|+|||.+++.
T Consensus 113 ~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 113 LSSLALHYIASFD--DICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEE
T ss_pred EEchhhhhhhhHH--HHHHHHHHHcCCCcEEEEE
Confidence 9999999997665 9999999999999999875
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-18 Score=143.60 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=91.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++..+ ++.+ .+|+++|+|+.|++.|++++...... .....+++++++|+...+..+++||+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~ 105 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLL-LKDKSFEQITGVDVSYSVLERAKDRLKIDRLP-EMQRKRISLFQSSLVYRDKRFSGYDA 105 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHH-HTSTTCCEEEEEESCHHHHHHHHHHHTGGGSC-HHHHTTEEEEECCSSSCCGGGTTCSE
T ss_pred cCCCEEEEecCCCCHHHHHH-HhcCCCCEEEEEECCHHHHHHHHHHHHhhccc-cccCcceEEEeCcccccccccCCCCE
Confidence 35679999999999999977 4665 59999999999999999987432100 00012799999999877766679999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++..+++|++++++..+++++.+.|+|||.++...
T Consensus 106 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 106 ATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 999999999998888899999999999999877653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=148.24 Aligned_cols=105 Identities=16% Similarity=0.112 Sum_probs=90.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-----C
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----G 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~ 229 (272)
+.++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++. ..+++|+++|+.+++... .
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~l-a~~~~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~~~~~ 123 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFL-SQFFPRVIGLDVSKSALEIAAKENT---------AANISYRLLDGLVPEQAAQIHSEI 123 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHH-HHHSSCEEEEESCHHHHHHHHHHSC---------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHH-HHhCCCEEEEECCHHHHHHHHHhCc---------ccCceEEECccccccccccccccc
Confidence 346679999999999999988 5777799999999999999999862 347999999998865321 2
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.||+|+++.++||+++.+...+|++++++|+|||.+++.+
T Consensus 124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4999999999999997777899999999999999988765
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-18 Score=143.36 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=90.4
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEech
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~ 238 (272)
.+|||+|||+|.++..++.....+++++|+|+.|++.|++++... ....+++++++|+.++++++++||+|+++.
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADA-----NLNDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhc-----cccCceEEEEcCHHHCCCCcccccEEEECc
Confidence 399999999999999885433559999999999999999987542 123579999999999887778999999999
Q ss_pred hhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 239 CIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 239 vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+++|+.+.. .+|+++.++|+|||.+++.+.
T Consensus 120 ~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 120 SVFFWEDVA--TAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp CGGGCSCHH--HHHHHHHHHEEEEEEEEEEEC
T ss_pred hHhhccCHH--HHHHHHHHhCCCCCEEEEEec
Confidence 999997666 999999999999999998753
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=150.31 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=97.5
Q ss_pred HHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE
Q 024100 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (272)
Q Consensus 141 ~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~ 218 (272)
.+..++.... .+.++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.|++++... ...++++++
T Consensus 24 ~l~~~l~~~~---~~~~~~~vLDiG~G~G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~ 93 (276)
T 3mgg_A 24 TLEKLLHHDT---VYPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDISPESLEKARENTEKN------GIKNVKFLQ 93 (276)
T ss_dssp HHHHHHHTTC---CCCTTCEEEETTCTTSHHHHHHH-HHCTTSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEE
T ss_pred HHHHHHhhcc---cCCCCCeEEEecCCCCHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEE
Confidence 3445544332 24577899999999999999885 55 458999999999999999987532 235799999
Q ss_pred eCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 219 VPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 219 ~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.|+.++++++++||+|+++.+++|+++++ .+++++.++|+|||.+++.+
T Consensus 94 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 94 ANIFSLPFEDSSFDHIFVCFVLEHLQSPE--EALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp CCGGGCCSCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred cccccCCCCCCCeeEEEEechhhhcCCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 99998887778999999999999998887 99999999999999998865
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-18 Score=142.73 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=92.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..++++.+.+|+++|+|+.|++.|++++... ..+++++++|+.++++++++||+|+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~ 94 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------NFKLNISKGDIRKLPFKDESMSFVY 94 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH-------TCCCCEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEECchhhCCCCCCceeEEE
Confidence 456799999999999866565677779999999999999999886431 2468999999998877667999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+++|++.++...+++++.++|+|||.+++.+
T Consensus 95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999977777799999999999999998764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-18 Score=150.72 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=90.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ....+++++++|+.+++ +.+++||+|+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 141 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKM-AERGHQVILCDLSAQMIDRAKQAAEAK-----GVSDNMQFIHCAAQDVASHLETPVDLIL 141 (285)
T ss_dssp SCCEEEEETCTTCHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHC------CCGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred CCCEEEEeCCcchHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcceEEEEcCHHHhhhhcCCCceEEE
Confidence 3569999999999999988 466889999999999999999987532 12368999999999886 4567999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+++|++++. .+|+++.++|+|||.+++..
T Consensus 142 ~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 142 FHAVLEWVADPR--SVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp EESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEE
T ss_pred ECchhhcccCHH--HHHHHHHHHcCCCeEEEEEE
Confidence 999999998776 99999999999999998754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=148.77 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=91.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|.++..++...+.+|+++|+|+.|++.|++++... ....++++.++|+.+++ ++||+|
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~---~~fD~v 159 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI-----DTNRSRQVLLQGWEDFA---EPVDRI 159 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS-----CCSSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEECChHHCC---CCcCEE
Confidence 4577899999999999999885443779999999999999999987532 12356999999998774 689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+++++...+|+++.++|+|||.+++.+
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999987777799999999999999998765
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=143.72 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=89.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..++ +.+. +|+++|+|+.|++.|+++.. ..+++++++|+.++++++++||+|
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAH-EHGASYVLGLDLSEKMLARARAAGP---------DTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHH-HTTCSEEEEEESCHHHHHHHHHTSC---------SSSEEEEECCGGGCCCCTTCEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHH-HCCCCeEEEEcCCHHHHHHHHHhcc---------cCCceEEEcChhhccCCCCCceEE
Confidence 456799999999999999884 6666 99999999999999998863 237899999998887666799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+++.. .+|+++.++|+|||.+++..
T Consensus 112 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 112 YSSLALHYVEDVA--RLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EEeccccccchHH--HHHHHHHHhcCcCcEEEEEe
Confidence 9999999997665 99999999999999998754
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-17 Score=138.88 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=89.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..++ +.+. +|+++|+|+.|++.|+++... ..++++.++|+.++++++++||+|
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~-~~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~fD~v 111 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELF-LGGFPNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVRKLDFPSASFDVV 111 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHH-HTTCCCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTTSCCSCSSCEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHH-HcCCCcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchhcCCCCCCcccEE
Confidence 456799999999999999885 5554 999999999999999998742 357899999999887666799999
Q ss_pred EechhhhhcC-------------hhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLT-------------DDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~-------------d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.+++|+. ..+...+++++.++|+|||.+++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 112 LEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp EEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 9999998876 3455699999999999999998765
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=147.02 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=91.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|.++..++.....+|+++|+|+.|++.|++++... ....++++.++|+.++ +++||+|
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~---~~~fD~v 141 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV-----DSPRRKEVRIQGWEEF---DEPVDRI 141 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHS-----CCSSCEEEEECCGGGC---CCCCSEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEECCHHHc---CCCccEE
Confidence 4677899999999999999885443789999999999999999987542 1234799999999887 4699999
Q ss_pred EechhhhhcChh-------hHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDD-------DFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~-------~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|++++ ++..+|+++.++|+|||.+++.+
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999663 45699999999999999998765
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=139.77 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=90.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+++++++|+|+.|++.|++++.. ...+++++++|+.++++++++||+|++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLL-EDYGFEVVGVDISEDMIRKAREYAKS-------RESNVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp SCCEEEEETCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHH-------TTCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHh-------cCCCceEEECchhcCCCCCCcEEEEEE
Confidence 4679999999999999977 57788999999999999999998743 125789999999988766679999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.++++...++...+++++.++|+|||.+++.+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 142 (227)
T 1ve3_A 110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 142 (227)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999666656666799999999999999998764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=139.71 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=91.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..++ +.+.+++++|+|+.|++.|++++... ...+++++++|+.++++ +++||+|++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~-~~~~D~v~~ 103 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLA-ANGYDVDAWDKNAMSIANVERIKSIE------NLDNLHTRVVDLNNLTF-DRQYDFILS 103 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEECCGGGCCC-CCCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHHhC------CCCCcEEEEcchhhCCC-CCCceEEEE
Confidence 56699999999999999884 66779999999999999999887432 23469999999988876 679999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.+++|++.++...+++++.++|+|||.+++.+
T Consensus 104 ~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 104 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 999999987777899999999999999987654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=145.31 Aligned_cols=106 Identities=14% Similarity=0.225 Sum_probs=90.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+.++.+|||+|||+|.++..++ +.++ +|+++|+|+.|++.|++++... ....+++++++|+.++++++++||+
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~fD~ 117 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLA-DYVKGQITGIDLFPDFIEIFNENAVKA-----NCADRVKGITGSMDNLPFQNEELDL 117 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHH-HHCCSEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTSCSSCTTCEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHH-HhCCCeEEEEECCHHHHHHHHHHHHHc-----CCCCceEEEECChhhCCCCCCCEEE
Confidence 4567799999999999999885 6555 9999999999999999987542 1234599999999998877789999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+++.+++|+ +.. .+++++.++|+|||.+++.+
T Consensus 118 v~~~~~l~~~-~~~--~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 118 IWSEGAIYNI-GFE--RGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp EEEESCSCCC-CHH--HHHHHHHTTEEEEEEEEEEE
T ss_pred EEecChHhhc-CHH--HHHHHHHHHcCCCcEEEEEE
Confidence 9999999998 444 89999999999999998876
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=145.39 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=91.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|.++..++ +.+.+|+++|+|+.|++.|++++. ....++++.++|++++++++++||+|
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~~~d~~~~~~~~~~fD~v 108 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLI-ARGYRYIALDADAAMLEVFRQKIA-------GVDRKVQVVQADARAIPLPDESVHGV 108 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHH-TTTCEEEEEESCHHHHHHHHHHTT-------TSCTTEEEEESCTTSCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhh-------ccCCceEEEEcccccCCCCCCCeeEE
Confidence 4567799999999999999884 668899999999999999999862 13468999999999988777899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++.++||+++.. .+++++.++|+|||.+++.
T Consensus 109 ~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 109 IVVHLWHLVPDWP--KVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EEESCGGGCTTHH--HHHHHHHHHEEEEEEEEEE
T ss_pred EECCchhhcCCHH--HHHHHHHHHCCCCcEEEEE
Confidence 9999999998766 9999999999999998764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=144.57 Aligned_cols=99 Identities=21% Similarity=0.346 Sum_probs=88.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++ .+++++++|+.++++ +++||+|++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~-~~~fD~v~~ 116 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHL-ADSFGTVEGLELSADMLAIARRRN-----------PDAVLHHGDMRDFSL-GRRFSAVTC 116 (263)
T ss_dssp TCCEEEEETCTTSHHHHHH-TTTSSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTTCCC-SCCEEEEEE
T ss_pred CCCcEEEeCCcCCHHHHHH-HHcCCeEEEEECCHHHHHHHHhhC-----------CCCEEEECChHHCCc-cCCcCEEEE
Confidence 4579999999999999977 577889999999999999999975 268999999999876 579999999
Q ss_pred ch-hhhhcCh-hhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QW-CIGHLTD-DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~-vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.. +++|+.+ .+...+|+++.++|+|||.+++.
T Consensus 117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 98 9999976 46679999999999999999885
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=149.08 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=91.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|.++..++...+.+|+++|+|+.|++.|++++... ....+++|+++|+.++++++++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL-----RIDDHVRSRVCNMLDTPFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCceEEEECChhcCCCCCCCEeEE
Confidence 4567899999999999999885333789999999999999999987542 12347999999999988777899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+ + ...+|+++.++|+|||.+++.+
T Consensus 190 ~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 190 WNNESTMYV-D--LHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCchhhC-C--HHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999 4 4599999999999999998765
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=147.28 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=91.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+.++.+|||+|||+|.++..++ +.. .+|+++|+|+.|++.|++++... ....+++++++|+.++++++++||+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la-~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~fD~ 117 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLA-GHVTGQVTGLDFLSGFIDIFNRNARQS-----GLQNRVTGIVGSMDDLPFRNEELDL 117 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHH-TTCSSEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTSCCCCTTCEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHH-hccCCEEEEEeCCHHHHHHHHHHHHHc-----CCCcCcEEEEcChhhCCCCCCCEEE
Confidence 4567899999999999999885 554 49999999999999999987542 1235799999999998877789999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++..+++|+ +.. .+|+++.++|+|||.+++.+
T Consensus 118 i~~~~~~~~~-~~~--~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 118 IWSEGAIYNI-GFE--RGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp EEESSCGGGT-CHH--HHHHHHGGGEEEEEEEEEEE
T ss_pred EEEcCCceec-CHH--HHHHHHHHHcCCCCEEEEEE
Confidence 9999999998 444 89999999999999998875
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-18 Score=143.36 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=91.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|++++... ...+++++++|+.++++++++|
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~~~~f 107 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLS-KMVGEKGKVYAIDVQEEMVNYAWEKVNKL------GLKNVEVLKSEENKIPLPDNTV 107 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHH-HHHTTTCEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEECBTTBCSSCSSCE
T ss_pred CCCCCEEEEEecCCCHHHHHHH-HHhCCCcEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEecccccCCCCCCCe
Confidence 3567799999999999999885 554 68999999999999999987432 2347999999999988777899
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|+++.+++|+++.. .+++++.+.|+|||.+++.+
T Consensus 108 D~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~ 143 (219)
T 3dh0_A 108 DFIFMAFTFHELSEPL--KFLEELKRVAKPFAYLAIID 143 (219)
T ss_dssp EEEEEESCGGGCSSHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEeehhhhhcCCHH--HHHHHHHHHhCCCeEEEEEE
Confidence 9999999999997766 99999999999999998875
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=140.34 Aligned_cols=97 Identities=14% Similarity=0.216 Sum_probs=85.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ...+++++|+|+.|++.|+++. .+++++++|+.++++++++||+|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcccccCCCCCCcEEEEEE
Confidence 5679999999999999855 2348999999999999999875 3678999999988877779999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
..+++|+++.. .+++++.++|+|||.+++..
T Consensus 102 ~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 102 FTTLEFVEDVE--RVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp ESCTTTCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred cChhhhcCCHH--HHHHHHHHHcCCCCEEEEEe
Confidence 99999998766 99999999999999998764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=144.81 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=88.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.++++. .+++++++|+++++ ++++||
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~-~~~~fD 97 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLT-DRYGVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADLATWK-PAQKAD 97 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHH-HHHCTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCTTTCC-CSSCEE
T ss_pred CCCCCEEEEecCcCCHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECChhhcC-ccCCcC
Confidence 3567799999999999999885 55 679999999999999999873 36899999999887 557999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|+++.++||+++.. .+|+++.++|+|||.+++..
T Consensus 98 ~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 98 LLYANAVFQWVPDHL--AVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp EEEEESCGGGSTTHH--HHHHHHGGGEEEEEEEEEEE
T ss_pred EEEEeCchhhCCCHH--HHHHHHHHhcCCCeEEEEEe
Confidence 999999999997766 99999999999999998764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=147.20 Aligned_cols=99 Identities=15% Similarity=0.271 Sum_probs=88.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..++ +.+.+|+++|+|+.|++.|++++ .++.+.++|++++++ +++||+|+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~-~~~fD~v~ 122 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIA-QSGAEVLGTDNAATMIEKARQNY-----------PHLHFDVADARNFRV-DKPLDAVF 122 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHC-----------TTSCEEECCTTTCCC-SSCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHH-hCCCeEEEEECCHHHHHHHHhhC-----------CCCEEEECChhhCCc-CCCcCEEE
Confidence 456799999999999999885 67789999999999999999875 368899999999876 47999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+++|++++. .+|++++++|+|||.+++..
T Consensus 123 ~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 123 SNAMLHWVKEPE--AAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp EESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EcchhhhCcCHH--HHHHHHHHhcCCCcEEEEEe
Confidence 999999998777 99999999999999998753
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=147.47 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=86.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|+++ .+++|+++|++++++++++||+|
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVAL-ANQGLFVYAVEPSIVMRQQAVVH------------PQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHH-HTTTCEEEEECSCHHHHHSSCCC------------TTEEEECCCTTSCCSCTTCBSEE
T ss_pred CCCCCEEEEEcCcccHHHHHH-HhCCCEEEEEeCCHHHHHHHHhc------------cCCEEEECchhhCCCCCCCEeEE
Confidence 356789999999999999988 46778999999999999887653 17999999999988777899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.++++|+++.. .++++++++|+ ||.+++.+
T Consensus 99 ~~~~~l~~~~~~~--~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 99 ISILAIHHFSHLE--KSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp EEESCGGGCSSHH--HHHHHHHHHBC-SSCEEEEE
T ss_pred EEcchHhhccCHH--HHHHHHHHHhC-CcEEEEEE
Confidence 9999999997766 99999999999 99776654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-17 Score=145.99 Aligned_cols=105 Identities=14% Similarity=0.257 Sum_probs=91.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..+ ++. ..+|+++|+|+.|++.|++++.. ...+++|.++|+.+++++ ++|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l-~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~~v~~~~~d~~~~~~~-~~f 90 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVL-MPLLPEGSKYTGIDSGETLLAEARELFRL-------LPYDSEFLEGDATEIELN-DKY 90 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHH-TTTSCTTCEEEEEESCHHHHHHHHHHHHS-------SSSEEEEEESCTTTCCCS-SCE
T ss_pred cCCCCeEEEecCCCCHHHHHH-HHhCCCCCEEEEEECCHHHHHHHHHHHHh-------cCCceEEEEcchhhcCcC-CCe
Confidence 456789999999999999988 465 35899999999999999998743 234899999999998764 699
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+|++..+++|+++.. .++++++++|+|||.+++.+.
T Consensus 91 D~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 91 DIAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp EEEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEEC
T ss_pred eEEEECChhhcCCCHH--HHHHHHHHHcCCCCEEEEEec
Confidence 9999999999998877 999999999999999998763
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-17 Score=138.65 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=93.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..++ +.+.+|+++|+|+.|++.|++++...... .....++++.++|+.++++++++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELA-SKGYSVTGIDINSEAIRLAETAARSPGLN-QKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTTCCSCC-SSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHhcCCc-cccCcceEEEEecccccCCCCCceeEEE
Confidence 356799999999999999884 66789999999999999999987542110 0112478999999999887778999999
Q ss_pred echhhhhcChhh-HHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDD-FVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~-~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+++|+++++ ...+++++.++|+|||.+++.+
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 999999998754 6689999999999999998864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-17 Score=140.59 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=87.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..++ +.+.+++++|+|+.|++.|++++ .+++++++|+.++++ +++||+|+|
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~-~~~~D~v~~ 106 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFT-KEFGDTAGLELSEDMLTHARKRL-----------PDATLHQGDMRDFRL-GRKFSAVVS 106 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHH-HHHSEEEEEESCHHHHHHHHHHC-----------TTCEEEECCTTTCCC-SSCEEEEEE
T ss_pred CCCeEEEecccCCHHHHHHH-HhCCcEEEEeCCHHHHHHHHHhC-----------CCCEEEECCHHHccc-CCCCcEEEE
Confidence 56799999999999999884 66779999999999999999875 358999999998876 569999996
Q ss_pred c-hhhhhcCh-hhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 Q-WCIGHLTD-DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~-~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
. .+++|+.+ ++...+|+++.++|+|||.+++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 4 59999965 567799999999999999998864
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=143.42 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=91.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ....+++|+++|+.++++. ++||+|++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~-~~fD~v~~ 138 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAM-ASPERFVVGLDISESALAKANETYGSS-----PKAEYFSFVKEDVFTWRPT-ELFDLIFD 138 (235)
T ss_dssp CCEEEEEETCTTCHHHHHH-CBTTEEEEEECSCHHHHHHHHHHHTTS-----GGGGGEEEECCCTTTCCCS-SCEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHH-HhCCCeEEEEECCHHHHHHHHHHhhcc-----CCCcceEEEECchhcCCCC-CCeeEEEE
Confidence 3469999999999999977 577789999999999999999987531 1235799999999998754 59999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.+++|+++++...+++++.++|+|||.+++.+
T Consensus 139 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 171 (235)
T 3lcc_A 139 YVFFCAIEPEMRPAWAKSMYELLKPDGELITLM 171 (235)
T ss_dssp ESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 999999997777799999999999999998754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=146.33 Aligned_cols=104 Identities=19% Similarity=0.138 Sum_probs=91.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ..+++++++|+.++++ +++||+|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l-~~~g~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~-~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYL-SLLGYDVTSWDHNENSIAFLNETKEKE-------NLNISTALYDINAANI-QENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHT-------TCCEEEEECCGGGCCC-CSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHH-HHCCCeEEEEECCHHHHHHHHHHHHHc-------CCceEEEEeccccccc-cCCccEEEE
Confidence 5679999999999999988 466779999999999999999987532 2279999999998876 579999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.+++|+++++...+++++.+.|+|||.+++..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999998888899999999999999976653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=143.96 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=86.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
+.++.+|||||||+|.++..+ ++.+.+|+++|+|+.|++.|+++ ++++++|+.++ ++++++||
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~--------------~~~~~~d~~~~~~~~~~~~fD 103 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELC-KEEGIESIGVDINEDMIKFCEGK--------------FNVVKSDAIEYLKSLPDKYLD 103 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHH-HHHTCCEEEECSCHHHHHHHHTT--------------SEEECSCHHHHHHTSCTTCBS
T ss_pred hcCCCeEEEEeCCCCHHHHHH-HhCCCcEEEEECCHHHHHHHHhh--------------cceeeccHHHHhhhcCCCCee
Confidence 345679999999999999977 56678999999999999999863 57788887765 55567999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++..+++|++++++..+|+++.++|+|||.+++..
T Consensus 104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999999999998888899999999999999988754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-18 Score=149.93 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=95.4
Q ss_pred HHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 138 s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
...++..++. ..++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|+++...... .....++.+.
T Consensus 45 ~~~~l~~~l~-------~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~ 114 (293)
T 3thr_A 45 YKAWLLGLLR-------QHGCHRVLDVACGTGVDSIML-VEEGFSVTSVDASDKMLKYALKERWNRRK--EPAFDKWVIE 114 (293)
T ss_dssp HHHHHHHHHH-------HTTCCEEEETTCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTT--SHHHHTCEEE
T ss_pred HHHHHHHHhc-------ccCCCEEEEecCCCCHHHHHH-HHCCCeEEEEECCHHHHHHHHHhhhhccc--ccccceeeEe
Confidence 3445555544 235679999999999999988 47777999999999999999887522100 0112467899
Q ss_pred EeCCCCCC---CCCCcceeeEec-hhhhhcCh-----hhHHHHHHHHHHhcccCcEEEEec
Q 024100 218 CVPLQDFT---PETGRYDVIWVQ-WCIGHLTD-----DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 218 ~~d~~~~~---~~~~~fDlIvs~-~vl~hl~d-----~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++|+.+++ +.+++||+|++. .+++|+++ .+...+|++++++|+|||.+++..
T Consensus 115 ~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 115 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp ECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99988765 556799999998 89999998 556699999999999999998653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-17 Score=140.37 Aligned_cols=117 Identities=18% Similarity=0.244 Sum_probs=94.0
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~ 218 (272)
..++..++.... ..++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ..++++++
T Consensus 27 ~~~~~~~~~~~~----~~~~~~vLDlGcG~G~~~~~l-~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~ 94 (252)
T 1wzn_A 27 IDFVEEIFKEDA----KREVRRVLDLACGTGIPTLEL-AERGYEVVGLDLHEEMLRVARRKAKER-------NLKIEFLQ 94 (252)
T ss_dssp HHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHT-------TCCCEEEE
T ss_pred HHHHHHHHHHhc----ccCCCEEEEeCCCCCHHHHHH-HHCCCeEEEEECCHHHHHHHHHHHHhc-------CCceEEEE
Confidence 455666665332 245679999999999999988 466789999999999999999987431 23689999
Q ss_pred eCCCCCCCCCCcceeeEec-hhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 219 VPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 219 ~d~~~~~~~~~~fDlIvs~-~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+.+++++ ++||+|++. .+++|++.++...+|+++.++|+|||.+++.
T Consensus 95 ~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 95 GDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp SCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 999887754 689999987 4566777777889999999999999998753
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=149.43 Aligned_cols=107 Identities=17% Similarity=0.258 Sum_probs=80.4
Q ss_pred CCCCeeeEeecccchHHHHHHH---hcCCcE----EEEeCCHHHHHHHHHhccccCCCCCCCCCceEE--EEeCCCCCC-
Q 024100 156 NQHLVALDCGSGIGRITKNLLI---RYFNEV----DLLEPVSHFLDAARESLAPENHMAPDMHKATNF--FCVPLQDFT- 225 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa---~~~~~v----~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~--~~~d~~~~~- 225 (272)
.++.+|||||||+|.++..++. ..++.+ +++|+|+.|++.|++++... ....++.+ .++++++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~-----~~~~~v~~~~~~~~~~~~~~ 125 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT-----SNLENVKFAWHKETSSEYQS 125 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC-----SSCTTEEEEEECSCHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc-----cCCCcceEEEEecchhhhhh
Confidence 4567999999999987764432 233433 99999999999999987421 11234444 455554443
Q ss_pred -----CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 226 -----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 226 -----~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++++||+|++++++||++|++ ++|++++++|||||.+++.+
T Consensus 126 ~~~~~~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 126 RMLEKKELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp HHHTTTCCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEE
T ss_pred hhccccCCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 3457999999999999998887 99999999999999998753
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=141.85 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=89.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDl 233 (272)
.++.+|||+|||+|.++..++ +.. .+|+++|+|+.|++.|++++... ....+++++++|+.+.++ .+++||+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~fD~ 136 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYE-RAGIGEYYGVDIAEVSINDARVRARNM-----KRRFKVFFRAQDSYGRHMDLGKEFDV 136 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHH-HHTCSEEEEEESCHHHHHHHHHHHHTS-----CCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred CCCCeEEEECCCCCHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCccEEEEECCccccccCCCCCcCE
Confidence 466799999999999999874 544 49999999999999999987532 122478999999998765 4579999
Q ss_pred eEechhhhh--cChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGH--LTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~h--l~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++..++|| .+.++...+|+++.++|+|||.+++..
T Consensus 137 v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 137 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999988 445667799999999999999998753
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-17 Score=150.50 Aligned_cols=210 Identities=16% Similarity=0.192 Sum_probs=132.3
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhccccc---chhhhhHHHH----
Q 024100 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGE---QQEKKTQWYR---- 107 (272)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~~~---~~~~~~~~y~---- 107 (272)
...+-++.+||.|++++.+++++++.. .| ++.+.+.|....| ..++.++... +..... ..++...|..
T Consensus 76 ~~~~~~~~~pk~~~~~~~~l~~~~~~~-~~-~~~~~~~g~~~~~--~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~ 150 (343)
T 2pjd_A 76 DCDTLIYYWPKNKPEAQFQLMNLLSLL-PV-GTDIFVVGENRSG--VRSAEQMLAD-YAPLNKVDSARRCGLYFGRLEKQ 150 (343)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHTTS-CT-TCEEEEEEEGGGT--GGGHHHHHTT-TSCCEEECCCTTEEEEEEECCSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHHhC-CC-CCEEEEEEecCCC--HHhHHHHHHH-hcCcchhhhhhcceeEEeecccC
Confidence 457889999999999999999999854 23 6677888888877 2234333322 221000 0111111110
Q ss_pred ---HHHhhhhcchh---hhhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC-
Q 024100 108 ---EGISYWEGVEA---SVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF- 180 (272)
Q Consensus 108 ---~~~~YW~~~~~---~~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~- 180 (272)
....||..-.. .+. ...|. ++....+....++...+. ..++.+|||+|||+|.++..++ +.+
T Consensus 151 ~~~~~~~~~~~y~~~~~~~~-~~~gv--f~~~~~d~~~~~ll~~l~-------~~~~~~VLDlGcG~G~~~~~la-~~~~ 219 (343)
T 2pjd_A 151 PVFDAEKFWGEYSVDGLTVK-TLPGV--FSRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSVAFA-RHSP 219 (343)
T ss_dssp CCCCGGGGCEEEEETTEEEE-ECTTC--TTSSSCCHHHHHHHHHSC-------TTCCSBCCBTTCTTSHHHHHHH-HHCT
T ss_pred CCCCchhhcceeeccceEEE-ecCCc--cCCCCCcHHHHHHHHhcC-------cCCCCeEEEecCccCHHHHHHH-HHCC
Confidence 01223322110 000 00111 111222222333333321 1245699999999999999885 555
Q ss_pred -CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhc---ChhhHHHHHHHHH
Q 024100 181 -NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDDFVSFFKRAK 256 (272)
Q Consensus 181 -~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl---~d~~~~~~l~~~~ 256 (272)
.+|+++|+|+.|++.|++++... ...++++++|+.++. +++||+|+++.++|+. ...+...+++++.
T Consensus 220 ~~~v~~vD~s~~~l~~a~~~~~~~-------~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~ 290 (343)
T 2pjd_A 220 KIRLTLCDVSAPAVEASRATLAAN-------GVEGEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAV 290 (343)
T ss_dssp TCBCEEEESBHHHHHHHHHHHHHT-------TCCCEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHh-------CCCCEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHH
Confidence 38999999999999999987531 224678899987754 4689999999998752 3345669999999
Q ss_pred HhcccCcEEEEec
Q 024100 257 ENIARSGTFLLSH 269 (272)
Q Consensus 257 r~LkpgG~liv~E 269 (272)
++|+|||.+++..
T Consensus 291 ~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 291 RHLNSGGELRIVA 303 (343)
T ss_dssp GGEEEEEEEEEEE
T ss_pred HhCCCCcEEEEEE
Confidence 9999999988764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-17 Score=146.22 Aligned_cols=105 Identities=21% Similarity=0.287 Sum_probs=89.6
Q ss_pred CCCCeeeEeecccchHHHHHHH--hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-----
Q 024100 156 NQHLVALDCGSGIGRITKNLLI--RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET----- 228 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa--~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~----- 228 (272)
.++.+|||+|||+|.++..++. ..+.+|+++|+|+.|++.|++++... .....+++|+++|++++++..
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~v~~~~~d~~~~~~~~~~~~~ 110 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS----PDTYKNVSFKISSSDDFKFLGADSVD 110 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC----C-CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc----cCCCCceEEEEcCHHhCCcccccccc
Confidence 3677999999999999998853 35779999999999999999987431 012468999999999987665
Q ss_pred -CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++||+|+++.++||+ +.. .+++++.++|+|||.+++
T Consensus 111 ~~~fD~V~~~~~l~~~-~~~--~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF-DFE--KFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SSCEEEEEEESCGGGS-CHH--HHHHHHHHHEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh-CHH--HHHHHHHHhcCCCcEEEE
Confidence 799999999999999 555 999999999999999987
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-17 Score=139.59 Aligned_cols=115 Identities=19% Similarity=0.343 Sum_probs=94.2
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~ 218 (272)
..++..++... ..++.+|||+|||+|.++..+ ++.+.+++++|+|+.|++.|++++... ..++++++
T Consensus 24 ~~~~~~~l~~~-----~~~~~~vLdiG~G~G~~~~~l-~~~~~~~~~~D~s~~~~~~a~~~~~~~-------~~~~~~~~ 90 (246)
T 1y8c_A 24 SDFIIEKCVEN-----NLVFDDYLDLACGTGNLTENL-CPKFKNTWAVDLSQEMLSEAENKFRSQ-------GLKPRLAC 90 (246)
T ss_dssp HHHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHH-GGGSSEEEEECSCHHHHHHHHHHHHHT-------TCCCEEEC
T ss_pred HHHHHHHHHHh-----CCCCCeEEEeCCCCCHHHHHH-HHCCCcEEEEECCHHHHHHHHHHHhhc-------CCCeEEEe
Confidence 34455555422 125679999999999999977 577789999999999999999987431 22789999
Q ss_pred eCCCCCCCCCCcceeeEech-hhhhcCh-hhHHHHHHHHHHhcccCcEEEE
Q 024100 219 VPLQDFTPETGRYDVIWVQW-CIGHLTD-DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 219 ~d~~~~~~~~~~fDlIvs~~-vl~hl~d-~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+.+++++ ++||+|++.. +++|+++ ++...+|++++++|+|||.+++
T Consensus 91 ~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 91 QDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999888765 7999999998 9999954 5677999999999999999886
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-17 Score=144.95 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~ 229 (272)
+.++.+|||+|||+|.++..| ++.+.+|+++|+|+.|++.|++++.. . +++.++.+++. .++
T Consensus 43 l~~g~~VLDlGcGtG~~a~~L-a~~g~~V~gvD~S~~ml~~Ar~~~~~-------~-----~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKA-LERGASVTVFDFSQRMCDDLAEALAD-------R-----CVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHTSS-------S-----CCEEEECCTTSCCCGGGTT
T ss_pred CCCcCEEEEEeCcchHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHh-------c-----cceeeeeecccccccccCC
Confidence 456789999999999999988 57788999999999999999998742 1 22333333322 136
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+||+|+++.++||++.++...+++++.++| |||.++++
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 899999999999999888889999999999 99999876
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=145.96 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=84.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCC------------CC-----------CC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA------------PD-----------MH 211 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~------------~~-----------~~ 211 (272)
..++.+|||||||+|.++..++...+.+|+++|+|+.|++.|++++......- .. ..
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 34667999999999988875533344579999999999999998763210000 00 00
Q ss_pred CceE-EEEeCCCCCCC----CCCcceeeEechhhhhcC-h-hhHHHHHHHHHHhcccCcEEEEec
Q 024100 212 KATN-FFCVPLQDFTP----ETGRYDVIWVQWCIGHLT-D-DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 212 ~~v~-~~~~d~~~~~~----~~~~fDlIvs~~vl~hl~-d-~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.++. ++++|+.+..+ ..++||+|+++++|||+. + +++..+|++++++|||||.+++..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1233 88999987422 235899999999999973 3 567799999999999999998874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=149.87 Aligned_cols=217 Identities=13% Similarity=0.132 Sum_probs=133.9
Q ss_pred CCeeEEEeccchhHHHHHHHHhhcCCCCCCCCCceeecccCCCCcccCCHHHHHHHHhccc---ccchhhhhHHHHHHH-
Q 024100 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED---GEQQEKKTQWYREGI- 110 (272)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~---~~~~~~~~~~y~~~~- 110 (272)
...+-++.+||++++++..+++.++.- ++ +..+++.|.+..|. .+..++..+..+.. ....+....|.....
T Consensus 100 ~~~~v~~~lpk~~~~l~~~L~~l~~~l-~~-~~~i~~~g~~~~~~--~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 175 (375)
T 4dcm_A 100 QPGVVLIKVPKTLALLEQQLRALRKVV-TS-DTRIIAGAKARDIH--TSTLELFEKVLGPTTTTLAWKKARLINCTFNEP 175 (375)
T ss_dssp SCSEEEEECCSCHHHHHHHHHHHHTTC-CT-TSEEEEEEEGGGCC--HHHHHHHHHHTCCEEECCCBTTEEEEEECCCCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhhC-CC-CCEEEEEecccchH--HHHHHHHHhhcCccchhhhhceeEEEEEeCCCC
Confidence 466789999999999999999998854 23 66888888888883 34555555543331 111111111111000
Q ss_pred --------hhhhcchhhhhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc--C
Q 024100 111 --------SYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--F 180 (272)
Q Consensus 111 --------~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~--~ 180 (272)
..|.-....+ .+...-..++...+.....++...+. ..++.+|||+|||+|.++..++ +. .
T Consensus 176 ~~~~~~~~~~~~~~~~~~-~~~~~pg~Fs~~~~d~~~~~ll~~l~-------~~~~~~VLDlGcG~G~~s~~la-~~~p~ 246 (375)
T 4dcm_A 176 QLADAPQTVSWKLEGTDW-TIHNHANVFSRTGLDIGARFFMQHLP-------ENLEGEIVDLGCGNGVIGLTLL-DKNPQ 246 (375)
T ss_dssp CCCCCCSCEEEEETTTTE-EEEECTTCTTCSSCCHHHHHHHHTCC-------CSCCSEEEEETCTTCHHHHHHH-HHCTT
T ss_pred CCCCCCCceEEEecCCce-EEEeCCCcccCCcccHHHHHHHHhCc-------ccCCCeEEEEeCcchHHHHHHH-HHCCC
Confidence 0111000000 00000011222233333333333222 2345799999999999999885 55 4
Q ss_pred CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhh---cChhhHHHHHHHHHH
Q 024100 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH---LTDDDFVSFFKRAKE 257 (272)
Q Consensus 181 ~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~h---l~d~~~~~~l~~~~r 257 (272)
.+|+++|+|+.|++.|++++..... ....+++|+++|+.+.. ++++||+|+++..+|+ +++....++|+++.+
T Consensus 247 ~~V~gvD~s~~al~~Ar~n~~~ngl---~~~~~v~~~~~D~~~~~-~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~ 322 (375)
T 4dcm_A 247 AKVVFVDESPMAVASSRLNVETNMP---EALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARR 322 (375)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHCG---GGGGGEEEEECSTTTTC-CTTCEEEEEECCCC-------CCHHHHHHHHHHH
T ss_pred CEEEEEECcHHHHHHHHHHHHHcCC---CcCceEEEEechhhccC-CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHH
Confidence 6899999999999999998753210 01135889999998743 4468999999999876 334445579999999
Q ss_pred hcccCcEEEEe
Q 024100 258 NIARSGTFLLS 268 (272)
Q Consensus 258 ~LkpgG~liv~ 268 (272)
.|+|||.++++
T Consensus 323 ~LkpgG~l~iv 333 (375)
T 4dcm_A 323 CLKINGELYIV 333 (375)
T ss_dssp HEEEEEEEEEE
T ss_pred hCCCCcEEEEE
Confidence 99999998774
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-17 Score=144.86 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=83.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
.++.+|||||||+|..+..+ ++. ..++++||+|+.|++.|+++... ...++.++.+|+++. ++++++||
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~-~~~~~~~v~~id~~~~~~~~a~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~FD 130 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKV-QEAPIDEHWIIECNDGVFQRLRDWAPR-------QTHKVIPLKGLWEDVAPTLPDGHFD 130 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHH-TTSCEEEEEEEECCHHHHHHHHHHGGG-------CSSEEEEEESCHHHHGGGSCTTCEE
T ss_pred cCCCeEEEECCCccHHHHHH-HHhCCcEEEEEeCCHHHHHHHHHHHhh-------CCCceEEEeehHHhhcccccccCCc
Confidence 46779999999999999977 455 45899999999999999998753 346788999988654 34557899
Q ss_pred eeE-----echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIW-----VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIv-----s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.|+ +.++++|+.+.+ .++++++|+|||||.|+..
T Consensus 131 ~i~~D~~~~~~~~~~~~~~~--~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 131 GILYDTYPLSEETWHTHQFN--FIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EEEECCCCCBGGGTTTHHHH--HHHHTHHHHEEEEEEEEEC
T ss_pred eEEEeeeecccchhhhcchh--hhhhhhhheeCCCCEEEEE
Confidence 987 466777876665 9999999999999998754
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-17 Score=134.00 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=84.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..++ +.+.+++++|+|+.|++.++++. .++++.++| .++++++||+|+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d---~~~~~~~~D~v~ 80 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLL-EFATKLYCIDINVIALKEVKEKF-----------DSVITLSDP---KEIPDNSVDFIL 80 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHH-TTEEEEEEECSCHHHHHHHHHHC-----------TTSEEESSG---GGSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHH-hhcCeEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC---CCCCCCceEEEE
Confidence 466799999999999999884 66569999999999999999873 378899888 444567999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+++|+++.. .+++++.+.|+|||.+++.+
T Consensus 81 ~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~ 112 (170)
T 3i9f_A 81 FANSFHDMDDKQ--HVISEVKRILKDDGRVIIID 112 (170)
T ss_dssp EESCSTTCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EccchhcccCHH--HHHHHHHHhcCCCCEEEEEE
Confidence 999999997766 99999999999999998875
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-17 Score=142.40 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=85.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
.++.+|||+|||+|.++..+ ++.. .+|+++|+|+.|++.|+++... ...++.++++|++++ ++++++||
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l-~~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~v~~~~~d~~~~~~~~~~~~fD 130 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKV-QEAPIDEHWIIECNDGVFQRLRDWAPR-------QTHKVIPLKGLWEDVAPTLPDGHFD 130 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHH-HTSCEEEEEEEECCHHHHHHHHHHGGG-------CSSEEEEEESCHHHHGGGSCTTCEE
T ss_pred CCCCeEEEEeccCCHHHHHH-HhcCCCeEEEEcCCHHHHHHHHHHHHh-------cCCCeEEEecCHHHhhcccCCCceE
Confidence 35679999999999999987 4644 4899999999999999998743 236799999999887 66668999
Q ss_pred eeEe-chhh--hhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWV-QWCI--GHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs-~~vl--~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++ .+.+ ++....++..++++++++|+|||.+++.+
T Consensus 131 ~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999 6653 22223445588999999999999998654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-17 Score=136.14 Aligned_cols=102 Identities=20% Similarity=0.170 Sum_probs=86.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
+. +|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ..++.++++|+.++++++++||+|++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFL-ASLGYEVTAVDQSSVGLAKAKQLAQEK-------GVKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp SS-EEEECCCSCTHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHH-------TCCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CC-CEEEECCCCCHhHHHH-HhCCCeEEEEECCHHHHHHHHHHHHhc-------CCceEEEEcChhhcCCCcCCccEEEE
Confidence 44 9999999999999977 466779999999999999999987431 23789999999988766679999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++ .|++..+...+++++.++|+|||.+++..
T Consensus 101 ~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 101 IF--CHLPSSLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp EC--CCCCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred Eh--hcCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 64 46666677799999999999999998764
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=130.43 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=88.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..++ +.+.+++++|+|+.|++.+++++ .++.++++|+.++++++++||+|++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~~D~~~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLS-KQGHDVLGTDLDPILIDYAKQDF-----------PEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHH-HTTCEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHH-HCCCcEEEEcCCHHHHHHHHHhC-----------CCCcEEEcccccCCCCCCceeEEEE
Confidence 56799999999999999884 66789999999999999999875 2589999999987766679999999
Q ss_pred c-hhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 Q-WCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~-~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+ .+++|+++++...+++++.+.|+|||.+++.
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~ 146 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIG 146 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 8 7899998887889999999999999998874
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=132.04 Aligned_cols=117 Identities=9% Similarity=0.049 Sum_probs=87.0
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~ 219 (272)
.+...++... +.++.+|||+|||+|.++..+ ++...+|+++|+|+.|++.|++++... ...++++++.
T Consensus 10 ~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~l-a~~~~~v~~vD~s~~~l~~a~~~~~~~------~~~~v~~~~~ 77 (185)
T 3mti_A 10 HMSHDFLAEV-----LDDESIVVDATMGNGNDTAFL-AGLSKKVYAFDVQEQALGKTSQRLSDL------GIENTELILD 77 (185)
T ss_dssp HHHHHHHHTT-----CCTTCEEEESCCTTSHHHHHH-HTTSSEEEEEESCHHHHHHHHHHHHHH------TCCCEEEEES
T ss_pred HHHHHHHHHh-----CCCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeC
Confidence 3444555433 346779999999999999988 466889999999999999999987532 2257999998
Q ss_pred CCCCCC-CCCCcceeeEechhhhhc-------ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 220 PLQDFT-PETGRYDVIWVQWCIGHL-------TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 220 d~~~~~-~~~~~fDlIvs~~vl~hl-------~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+.++ +.+++||+|+++....+. ...+...+++++.+.|+|||.+++.
T Consensus 78 ~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 78 GHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp CGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 877742 235689999987422221 1244558999999999999998765
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=148.23 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=90.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCC--CCCCCCceEEEEeCCCCC------
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHM--APDMHKATNFFCVPLQDF------ 224 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~--~~~~~~~v~~~~~d~~~~------ 224 (272)
..++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++...... ......+++|+++|++++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 3467799999999999999885433 349999999999999999876321000 000125899999999987
Q ss_pred CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 225 ~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++++++||+|+++.+++|+++.. .+|++++++|+|||.+++.+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCCCCEEEEEE
Confidence 66668999999999999998766 99999999999999998865
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=142.23 Aligned_cols=108 Identities=24% Similarity=0.341 Sum_probs=89.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
.+.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++..... ....+++|+++|+.++++ +++||+|++
T Consensus 82 ~~~~vLDlGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~v~~~~~d~~~~~~-~~~fD~v~~ 156 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPF-LDLGWEVTALELSTSVLAAFRKRLAEAPA---DVRDRCTLVQGDMSAFAL-DKRFGTVVI 156 (299)
T ss_dssp CCSCEEEETCTTTTTHHHH-HTTTCCEEEEESCHHHHHHHHHHHHTSCH---HHHTTEEEEECBTTBCCC-SCCEEEEEE
T ss_pred CCCcEEEEeccCCHHHHHH-HHcCCeEEEEECCHHHHHHHHHHHhhccc---ccccceEEEeCchhcCCc-CCCcCEEEE
Confidence 3459999999999999988 46688999999999999999998753100 000579999999999876 579999986
Q ss_pred c-hhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 Q-WCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~-~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
. .+++|+++++...+|+++.++|+|||.+++..
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 157 SSGSINELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 77888877778899999999999999998753
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-16 Score=134.80 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=86.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
+..+|||+|||+|.++..+ ++. .+|+++|+|+.|++.|++++... ..+++++++|+.+++++ ++||+|++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l-~~~-~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~-~~fD~v~~ 102 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLL-ADH-YEVTGVDLSEEMLEIAQEKAMET-------NRHVDFWVQDMRELELP-EPVDAITI 102 (243)
T ss_dssp TTCEEEEESCTTCHHHHHH-TTT-SEEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHH-hhC-CeEEEEECCHHHHHHHHHhhhhc-------CCceEEEEcChhhcCCC-CCcCEEEE
Confidence 4579999999999999977 466 89999999999999999987431 24789999999888765 68999999
Q ss_pred ch-hhhhcC-hhhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QW-CIGHLT-DDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~-vl~hl~-d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.. +++|+. .++...+++++.++|+|||.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 87 999994 45677999999999999999876
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=145.78 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=82.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC------CC--CCCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ------DF--TPET 228 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~------~~--~~~~ 228 (272)
++.+|||||||+|..+..++...+.+|+|+|+|+.||+.|+++............-+++|.+.|+. ++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 467999999999987776655556799999999999999999864321000000013678888872 21 1234
Q ss_pred CcceeeEechhhhhc-ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHL-TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl-~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++||+|+|.+++||+ .+++...+|++++++|+|||.+++.
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~ 168 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLIT 168 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 699999999999986 3345679999999999999999865
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=141.88 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=88.0
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCC----------------------------
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHM---------------------------- 206 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~---------------------------- 206 (272)
++.+|||||||+|.++..++ +. ..+|++||+|+.|++.|++++......
T Consensus 46 ~~~~VLDiGCG~G~~~~~la-~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIA-CKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHH-HHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 56799999999999999885 55 459999999999999999986532100
Q ss_pred ------------------------CCCCCCceEEEEeCCCCCC-----CCCCcceeeEechhhhhc----ChhhHHHHHH
Q 024100 207 ------------------------APDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHL----TDDDFVSFFK 253 (272)
Q Consensus 207 ------------------------~~~~~~~v~~~~~d~~~~~-----~~~~~fDlIvs~~vl~hl----~d~~~~~~l~ 253 (272)
......+++|.++|+.... +..++||+|+|..+++|+ .+++...+|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 0001158999999997654 345799999999999887 5667789999
Q ss_pred HHHHhcccCcEEEEec
Q 024100 254 RAKENIARSGTFLLSH 269 (272)
Q Consensus 254 ~~~r~LkpgG~liv~E 269 (272)
+++++|+|||.+++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999998753
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-16 Score=135.31 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=83.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|+++.. . .++++|+.++++++++||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~l~~a~~~~~----------~--~~~~~d~~~~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFL-QERGFEVVLVDPSKEMLEVAREKGV----------K--NVVEAKAEDLPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHH-HTTTCEEEEEESCHHHHHHHHHHTC----------S--CEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHH-HHcCCeEEEEeCCHHHHHHHHhhcC----------C--CEEECcHHHCCCCCCCEEEEEE
Confidence 5679999999999999988 4667899999999999999998752 1 2889999988876789999999
Q ss_pred chhhhhc-ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHL-TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl-~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+++|+ ++ ...+|+++.++|+|||.+++.
T Consensus 121 ~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~ 151 (260)
T 2avn_A 121 LGDVLSYVEN--KDKAFSEIRRVLVPDGLLIAT 151 (260)
T ss_dssp CSSHHHHCSC--HHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhhhcccc--HHHHHHHHHHHcCCCeEEEEE
Confidence 8877776 44 459999999999999999875
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=134.65 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=81.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCCC-Ccce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPET-GRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~~-~~fD 232 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|+++ .++.+.+.|+.++ ++.. ++||
T Consensus 52 ~~~~vLdiG~G~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRAL-ADRGIEAVGVDGDRTLVDAARAA------------GAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHH-HTTTCEEEEEESCHHHHHHHHHT------------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHH-HHCCCEEEEEcCCHHHHHHHHHh------------cccccchhhHHhhcccccccCCCcc
Confidence 4579999999999999988 46688999999999999999986 2467778777665 3333 4699
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|+++.+++ ..+.. .++++++++|+|||.+++.+.
T Consensus 119 ~v~~~~~l~-~~~~~--~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 119 LICANFALL-HQDII--ELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp EEEEESCCC-SSCCH--HHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEECchhh-hhhHH--HHHHHHHHHhCCCeEEEEEec
Confidence 999999997 55555 999999999999999998653
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-16 Score=138.37 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=87.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCC------------CC-----------CC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMA------------PD-----------MH 211 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~------------~~-----------~~ 211 (272)
.++.+|||+|||+|.++..+ ++.+. +|+++|+|+.|++.|++++....... .+ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l-~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLS-ACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTT-GGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHH-hhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 45679999999999999966 56666 99999999999999999874310000 00 00
Q ss_pred Cce-EEEEeCCCCCCC-CC---CcceeeEechhhhhcChh--hHHHHHHHHHHhcccCcEEEEec
Q 024100 212 KAT-NFFCVPLQDFTP-ET---GRYDVIWVQWCIGHLTDD--DFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 212 ~~v-~~~~~d~~~~~~-~~---~~fDlIvs~~vl~hl~d~--~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.++ .++++|+.+..+ ++ ++||+|++.++++|++.. +...+|+++.++|+|||.+++.+
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 127 899999988654 44 689999999999966543 66799999999999999998865
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=142.62 Aligned_cols=109 Identities=13% Similarity=0.025 Sum_probs=90.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++... ....+++|+++|+.+++++ ++||
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~-~~fD 189 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH-----ALAGQITLHRQDAWKLDTR-EGYD 189 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-----TTGGGEEEEECCGGGCCCC-SCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEECchhcCCcc-CCeE
Confidence 3567799999999999999773122 459999999999999999998542 1234699999999998766 7999
Q ss_pred eeEechhhhhcChhh-HHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDD-FVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|+++.+++|+++++ ...+++++.++|+|||.+++.+
T Consensus 190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999999998765 3468999999999999999865
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=141.01 Aligned_cols=107 Identities=17% Similarity=0.318 Sum_probs=91.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 232 (272)
...+|||||||+|.++..++ +.++ +++++|. +.|++.|++++... ....+++|..+|+.+.. ++ ++||
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~p-~~~D 250 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCV-QYNKEVEVTIVDL-PQQLEMMRKQTAGL-----SGSERIHGHGANLLDRDVPFP-TGFD 250 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHH-HHSTTCEEEEEEC-HHHHHHHHHHHTTC-----TTGGGEEEEECCCCSSSCCCC-CCCS
T ss_pred CCCEEEEeCCCcCHHHHHHH-HhCCCCEEEEEeC-HHHHHHHHHHHHhc-----CcccceEEEEccccccCCCCC-CCcC
Confidence 45699999999999999885 5443 7999999 99999999987532 12358999999998763 33 6899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++.+++||+++++...+|++++++|+|||.+++.|.+
T Consensus 251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 999999999999998889999999999999999998864
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=134.70 Aligned_cols=121 Identities=16% Similarity=0.083 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhccCCCccCCCCCeeeEeeccc---chHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCC
Q 024100 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGI---GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (272)
Q Consensus 137 ~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGt---G~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~ 211 (272)
..+.|+..++..... .....+|||||||+ |.++..+ .+. ..+|+++|.|+.|++.|++++.. .
T Consensus 60 ~~~~~~~~~~~~l~~---~~~~~~vLDlGcG~pt~G~~~~~~-~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------~ 127 (274)
T 2qe6_A 60 ENRKVLVRGVRFLAG---EAGISQFLDLGSGLPTVQNTHEVA-QSVNPDARVVYVDIDPMVLTHGRALLAK--------D 127 (274)
T ss_dssp HHHHHHHHHHHHHHT---TTCCCEEEEETCCSCCSSCHHHHH-HHHCTTCEEEEEESSHHHHHHHHHHHTT--------C
T ss_pred HHhHHHHHHHHHHhh---ccCCCEEEEECCCCCCCChHHHHH-HHhCCCCEEEEEECChHHHHHHHHhcCC--------C
Confidence 334556555442211 12346999999999 9988744 454 35899999999999999998732 3
Q ss_pred CceEEEEeCCCCCC-----------CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 212 KATNFFCVPLQDFT-----------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 212 ~~v~~~~~d~~~~~-----------~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+++|+++|+.+.. ++..+||+|+++.+|||+++.+...+|++++++|+|||++++.+
T Consensus 128 ~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 128 PNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp TTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 57999999997631 12247999999999999998777799999999999999998875
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-16 Score=138.96 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=81.9
Q ss_pred CCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCC------------CCC------------C
Q 024100 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMA------------PDM------------H 211 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~------------~~~------------~ 211 (272)
++.+|||||||+|.++. +++. .+.+|+++|+|+.|++.|++++....... ... .
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 56799999999999655 4333 46799999999999999998764210000 000 0
Q ss_pred CceEEEEeCCCC-CCC-----CCCcceeeEechhhhhcChh--hHHHHHHHHHHhcccCcEEEEec
Q 024100 212 KATNFFCVPLQD-FTP-----ETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 212 ~~v~~~~~d~~~-~~~-----~~~~fDlIvs~~vl~hl~d~--~~~~~l~~~~r~LkpgG~liv~E 269 (272)
..+.++.+|+.+ .++ ++++||+|+++++|+|+... +...+|++++++|+|||.+++.+
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 125677788877 332 23579999999999996543 66699999999999999998763
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=130.47 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=83.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC--CCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++ +...+++++|+|+.|++.++++. .++.++|+.+ .++++++||+|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~-~~~~~~~~~D~~~~~~~~~~~~~-------------~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIK-ENGTRVSGIEAFPEAAEQAKEKL-------------DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHH-TTTCEEEEEESSHHHHHHHHTTS-------------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHH-hcCCeEEEEeCCHHHHHHHHHhC-------------CcEEEcchhhcCCCCCCCccCEE
Confidence 56799999999999999885 55789999999999999998754 2688899876 34455799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.+++|++++. .+++++.++|+|||.+++..
T Consensus 98 ~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 98 IFGDVLEHLFDPW--AVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp EEESCGGGSSCHH--HHHHHTGGGEEEEEEEEEEE
T ss_pred EECChhhhcCCHH--HHHHHHHHHcCCCCEEEEEe
Confidence 9999999998876 99999999999999998764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=150.35 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=91.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
++.+|||||||+|.++..| ++.+ .+|++||+|+.|++.|++++............+++|+++|+.++++.+++||+
T Consensus 721 ~g~rVLDVGCGTG~lai~L-Ar~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSL-LDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp CCSEEEEETCSSSHHHHHH-TSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred CCCEEEEECCCCCHHHHHH-HHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 5679999999999999977 5776 69999999999999999865421100011345899999999999887789999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++..+++|++++....+++++.++|+|| .+++.
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEE
Confidence 99999999999988888999999999999 55554
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=135.47 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=90.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+..+|||+|||+|.++..++ +.++ +++++|+ +.|++.|++++... ....+++|..+|+.+ +.+ .+||
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~-~~p-~~~D 237 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALL-TAHEDLSGTVLDL-QGPASAAHRRFLDT-----GLSGRAQVVVGSFFD-PLP-AGAG 237 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTS-CCC-CSCS
T ss_pred CCCCCEEEEeCCChhHHHHHHH-HHCCCCeEEEecC-HHHHHHHHHhhhhc-----CcCcCeEEecCCCCC-CCC-CCCc
Confidence 3456799999999999999885 5444 6899999 99999999987532 123679999999973 223 2899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++.+++||+++++..++|++++++|+|||++++.|..
T Consensus 238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 999999999999998889999999999999999998864
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-16 Score=145.92 Aligned_cols=144 Identities=12% Similarity=0.037 Sum_probs=102.8
Q ss_pred ccccCCCCCcchhhhh-HHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHh
Q 024100 122 GVLGGFGNVNEVDIKG-SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (272)
Q Consensus 122 ~~lggy~~~s~~d~~~-s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~ 199 (272)
..+.+|..++..-+.. ...++..++... .+.++.+|||||||+|.++..++..... +|+|||+|+.|++.|+++
T Consensus 141 ~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l----~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n 216 (438)
T 3uwp_A 141 EKLNNYEPFSPEVYGETSFDLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 216 (438)
T ss_dssp GGSCCCSSSCGGGGGGTHHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHH
T ss_pred HHhcCcccCCCcccCCCCHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 3455676655554433 344555665532 2567889999999999999988544444 599999999999999886
Q ss_pred ccccCCC--CCC-CCCceEEEEeCCCCCCCCC--CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCCC
Q 024100 200 LAPENHM--APD-MHKATNFFCVPLQDFTPET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSLI 272 (272)
Q Consensus 200 l~~~~~~--~~~-~~~~v~~~~~d~~~~~~~~--~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~~ 272 (272)
...++.. ..+ ...+++|+++|+.+.++.+ ..||+|+++..+ | ++++...|+++.+.|+|||.||..|.+.
T Consensus 217 ~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F--~pdl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 217 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F--GPEVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp HHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C--CHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred HHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccc-c--CchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 4221000 000 1258999999998876532 379999998776 3 3566689999999999999999998763
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=137.53 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=87.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC-CCCCCCceEEEEeCCCCCC----C--CCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT----P--ETG 229 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~-~~~~~~~v~~~~~d~~~~~----~--~~~ 229 (272)
++.+|||+|||+|.++..++.....+++++|+|+.|++.|+++....... ......+++++++|+++.+ + +++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 56799999999999999886444669999999999999999886421000 0002247899999998865 3 235
Q ss_pred cceeeEechhhhhc-Ch-hhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHL-TD-DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl-~d-~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+||+|+++.++||+ .+ ++...+|+++.++|+|||.+++.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT 154 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 89999999999998 33 55679999999999999999875
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=131.29 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=78.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-CCCCCC-CCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPE-TGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-~~~~~~-~~~fDl 233 (272)
.++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|+++. .+++|+++|+ +.++++ +++||+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~~fD~ 114 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARF-GPQAARWAAYDFSPELLKLARANA-----------PHADVYEWNGKGELPAGLGAPFGL 114 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHH-GGGSSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCSSCCTTCCCCEEE
T ss_pred CCCCeEEEeCCCCCHHHHHH-HHcCCEEEEEECCHHHHHHHHHhC-----------CCceEEEcchhhccCCcCCCCEEE
Confidence 35679999999999999977 577889999999999999999873 3689999999 456655 679999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+++ .+.. .+++++.++|+|||.++
T Consensus 115 v~~~------~~~~--~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 115 IVSR------RGPT--SVILRLPELAAPDAHFL 139 (226)
T ss_dssp EEEE------SCCS--GGGGGHHHHEEEEEEEE
T ss_pred EEeC------CCHH--HHHHHHHHHcCCCcEEE
Confidence 9987 2444 89999999999999987
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=133.77 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=86.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHH------HHHHHHHhccccCCCCCCCCCceEEEEeC-C--CC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSH------FLDAARESLAPENHMAPDMHKATNFFCVP-L--QD 223 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~------mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~--~~ 223 (272)
+.++.+|||||||+|.++..++...+ .+|+++|+|+. |++.|++++... ....+++++++| + ..
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~ 115 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG-----PLGDRLTVHFNTNLSDDL 115 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-----TTGGGEEEECSCCTTTCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-----CCCCceEEEECChhhhcc
Confidence 45678999999999999998853323 69999999997 999999987532 123579999998 3 34
Q ss_pred CCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 224 ~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.++++++||+|++..+++|+++++ .+++.+.++++|||.+++.+
T Consensus 116 ~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 116 GPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp GGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEE
T ss_pred CCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEE
Confidence 444557999999999999998887 67777778888899998865
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=135.70 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=91.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.+..+|||+|||+|.++..++ +. ..+++++|+| .|++.|++++... ....+++|..+|+.+.+++. .||+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~~-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~-~~D~ 235 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVA-QHNPNAEIFGVDWA-SVLEVAKENARIQ-----GVASRYHTIAGSAFEVDYGN-DYDL 235 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHH-HHCTTCEEEEEECH-HHHHHHHHHHHHH-----TCGGGEEEEESCTTTSCCCS-CEEE
T ss_pred CCCCEEEEECCCcCHHHHHHH-HHCCCCeEEEEecH-HHHHHHHHHHHhc-----CCCcceEEEecccccCCCCC-CCcE
Confidence 466799999999999999885 55 3489999999 9999999987432 12346999999998765543 5999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
|++.+++||+++++...++++++++|+|||.+++.|..
T Consensus 236 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 236 VLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 99999999999888889999999999999999887753
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=128.33 Aligned_cols=107 Identities=11% Similarity=0.008 Sum_probs=86.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fDl 233 (272)
.++.+|||+|||+|.++..+++....+|+++|+|+.|++.|++++... ...+++++++|+.++. +++++||+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~fD~ 116 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEAL------GLSGATLRRGAVAAVVAAGTTSPVDL 116 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH------TCSCEEEEESCHHHHHHHCCSSCCSE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc------CCCceEEEEccHHHHHhhccCCCccE
Confidence 356799999999999999876544558999999999999999987542 2257999999998763 23468999
Q ss_pred eEechhhhhcChhhHHHHHHHHHH--hcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKE--NIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r--~LkpgG~liv~E 269 (272)
|+++..+++. .++..++++++.+ +|+|||.+++..
T Consensus 117 i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 117 VLADPPYNVD-SADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp EEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred EEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 9999887653 3456699999999 999999998754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=128.37 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=81.4
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+.+|||+|||+|.++..++ .. +++|+|+.|++.++++ +++++++|+.++++++++||+|++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~-~~----~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLK-IK----IGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHT-CC----EEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHH-HH----hccCCCHHHHHHHHhc-------------CCEEEEcccccCCCCCCCeeEEEEc
Confidence 6699999999999999774 44 9999999999999874 4789999998887766799999999
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+++|++++. .+|+++.++|+|||.+++.+
T Consensus 110 ~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 110 TTICFVDDPE--RALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp SCGGGSSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred chHhhccCHH--HHHHHHHHHcCCCcEEEEEE
Confidence 9999997776 99999999999999998764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-15 Score=124.44 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=85.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|++++... ...+++++++|+.+.....++||
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~D 110 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEAS-NLMPNGRIFALERNPQYLGFIRDNLKKF------VARNVTLVEAFAPEGLDDLPDPD 110 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHH-HHCTTSEEEEEECCHHHHHHHHHHHHHH------TCTTEEEEECCTTTTCTTSCCCS
T ss_pred CCCCCEEEEECCCCCHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEeCChhhhhhcCCCCC
Confidence 4567899999999999999884 666 68999999999999999987532 23579999999976544436899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++..+++ +...+++++.+.|+|||.+++..
T Consensus 111 ~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 111 RVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp EEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEe
Confidence 999998874 34589999999999999998764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=127.28 Aligned_cols=99 Identities=16% Similarity=0.080 Sum_probs=84.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ ++...+|+++|+|+.+++.|++++... ...+++++++|+.+..+..++||+|
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l-a~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~D~i 147 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAIL-AHLVQHVCSVERIKGLQWQARRRLKNL------DLHNVSTRHGDGWQGWQARAPFDAI 147 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHH-HHHSSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEecCHHHHHHHHHHHHHc------CCCceEEEECCcccCCccCCCccEE
Confidence 456789999999999999977 466889999999999999999987542 2347999999998765555799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++.+++|+++ ++.+.|+|||.+++.
T Consensus 148 ~~~~~~~~~~~--------~~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 148 IVTAAPPEIPT--------ALMTQLDEGGILVLP 173 (210)
T ss_dssp EESSBCSSCCT--------HHHHTEEEEEEEEEE
T ss_pred EEccchhhhhH--------HHHHhcccCcEEEEE
Confidence 99999999875 478999999998875
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=136.47 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=90.2
Q ss_pred CCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCccee
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fDl 233 (272)
..+|||||||+|.++..++ +.++ +++++|+ +.|++.|++++... ....+++|..+|+.+.+ ++ +.||+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~-~~~D~ 251 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVL-RRHPQLTGQIWDL-PTTRDAARKTIHAH-----DLGGRVEFFEKNLLDARNFEG-GAADV 251 (352)
T ss_dssp CCEEEEETCTTCHHHHHHH-HHCTTCEEEEEEC-GGGHHHHHHHHHHT-----TCGGGEEEEECCTTCGGGGTT-CCEEE
T ss_pred CCEEEEeCCCcCHHHHHHH-HhCCCCeEEEEEC-HHHHHHHHHHHHhc-----CCCCceEEEeCCcccCcccCC-CCccE
Confidence 7799999999999999885 5543 7899999 88999999887532 12357999999998875 33 57999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
|++.+++||+++++...+|+++++.|+|||.+++.|.+
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 99999999999988889999999999999999998754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-15 Score=136.46 Aligned_cols=108 Identities=22% Similarity=0.309 Sum_probs=90.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+..+|||+|||+|.++..++ +.++ +++++|+ +.+++.|++++... ....+++|..+|+.+ +.+ ..||
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~l~~~v~~~~~d~~~-~~p-~~~D 270 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVL-DAFPGLRGTLLER-PPVAEEARELLTGR-----GLADRCEILPGDFFE-TIP-DGAD 270 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTT-CCC-SSCS
T ss_pred CccCcEEEEeCCCccHHHHHHH-HHCCCCeEEEEcC-HHHHHHHHHhhhhc-----CcCCceEEeccCCCC-CCC-CCce
Confidence 4567899999999999999885 5554 7899999 99999999987532 124679999999973 223 3799
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++.+++||+++++..++|+++++.|+|||++++.|.+
T Consensus 271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999999999999998889999999999999999998754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-15 Score=134.84 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=84.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+.++.+|||||||+|.++..++++ ...+|++||+|+.|++.|++++... ...+++|.++|+.+++ +++||+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~------gl~~v~~v~gDa~~l~--d~~FDv 191 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL------GVDGVNVITGDETVID--GLEFDV 191 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH------TCCSEEEEESCGGGGG--GCCCSE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc------CCCCeEEEECchhhCC--CCCcCE
Confidence 678899999999999887656566 4679999999999999999987543 1268999999998875 479999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++... . ++..++++++.+.|+|||.+++.+
T Consensus 192 V~~~a~---~--~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 192 LMVAAL---A--EPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EEECTT---C--SCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCC---c--cCHHHHHHHHHHHcCCCcEEEEEc
Confidence 998654 3 344599999999999999998764
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-15 Score=121.67 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=86.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCc--eEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA--TNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++..++ +...+++++|+|+.|++.|++++... ...+ ++++++|+.+... +++||+
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~~~~d~~~~~~-~~~~D~ 122 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALA-DEVKSTTMADINRRAIKLAKENIKLN------NLDNYDIRVVHSDLYENVK-DRKYNK 122 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHG-GGSSEEEEEESCHHHHHHHHHHHHHT------TCTTSCEEEEECSTTTTCT-TSCEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHH-HcCCeEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECchhcccc-cCCceE
Confidence 466799999999999999884 55889999999999999999987532 2234 9999999987543 468999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+++.+++| ...+...+++++.+.|+|||.+++..
T Consensus 123 v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 123 IITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEE
Confidence 999998865 23455699999999999999998764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=134.61 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=89.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+..+|||+|||+|.++..++ +.+ .+++++|+ +.|++.|++++... ....+++|+++|+.+. .+ ..||
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~-~~~~~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~-~~-~~~D 250 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIA-LRAPHLRGTLVEL-AGPAERARRRFADA-----GLADRVTVAEGDFFKP-LP-VTAD 250 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTSC-CS-CCEE
T ss_pred CCCCCEEEEECCCcCHHHHHHH-HHCCCCEEEEEeC-HHHHHHHHHHHHhc-----CCCCceEEEeCCCCCc-CC-CCCC
Confidence 3467799999999999999885 554 47899999 99999999987432 1234799999998762 23 2599
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|++++++||+++++...+|++++++|+|||.+++.|.
T Consensus 251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 251 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999999999998888999999999999999998775
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-15 Score=135.25 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=90.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+..+|||||||+|.++..++ +.++ +++++|+ +.|++.|++++... ....+++|+.+|+.+.++++ +|
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~--~D 258 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAML-KHFPELDSTILNL-PGAIDLVNENAAEK-----GVADRMRGIAVDIYKESYPE--AD 258 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHH-HHCTTCEEEEEEC-GGGHHHHHHHHHHT-----TCTTTEEEEECCTTTSCCCC--CS
T ss_pred CCCCCEEEEECCcccHHHHHHH-HHCCCCeEEEEec-HHHHHHHHHHHHhc-----CCCCCEEEEeCccccCCCCC--CC
Confidence 4567799999999999999885 6554 8899999 99999999987532 12346999999998875543 49
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|++.+++||+++++..++|+++++.|+|||.+++.|.
T Consensus 259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 259 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred EEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 99999999999998888999999999999999988774
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=119.86 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=80.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.|++++... ....++ ++++|..+ ++..+++|
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~-~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~~-~~~~d~~~~~~~~~~~~ 95 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWL-RSTPQTTAVCFEISEERRERILSNAINL-----GVSDRI-AVQQGAPRAFDDVPDNP 95 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHH-TTSSSEEEEEECSCHHHHHHHHHHHHTT-----TCTTSE-EEECCTTGGGGGCCSCC
T ss_pred ccCCCeEEEeCCCCCHHHHHHH-HHCCCCeEEEEeCCHHHHHHHHHHHHHh-----CCCCCE-EEecchHhhhhccCCCC
Confidence 3567799999999999999884 55 468999999999999999987532 122367 88888754 33222689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|+++.+++| . .+++++.+.|+|||.+++..
T Consensus 96 D~i~~~~~~~~----~--~~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 96 DVIFIGGGLTA----P--GVFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp SEEEECC-TTC----T--THHHHHHHTCCTTCEEEEEE
T ss_pred CEEEECCcccH----H--HHHHHHHHhcCCCCEEEEEe
Confidence 99999999977 3 79999999999999998765
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-15 Score=131.87 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=84.4
Q ss_pred CCCeeeEeecccch----HHHHHHHhc-C-----CcEEEEeCCHHHHHHHHHhccccCC----------------CCCCC
Q 024100 157 QHLVALDCGSGIGR----ITKNLLIRY-F-----NEVDLLEPVSHFLDAARESLAPENH----------------MAPDM 210 (272)
Q Consensus 157 ~~~~VLDiGcGtG~----~t~~LLa~~-~-----~~v~~vD~S~~mld~A~~~l~~~~~----------------~~~~~ 210 (272)
++.+|||+|||||. ++..| ++. . .+|+++|+|+.||+.|++..-.... .....
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L-~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~ 183 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITL-ADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 183 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHH-HHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCcEEEEeeccCChhHHHHHHHH-HHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence 35699999999998 55534 343 1 3899999999999999987521000 00000
Q ss_pred ---------CCceEEEEeCCCCCCCC-CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 211 ---------HKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 211 ---------~~~v~~~~~d~~~~~~~-~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
..++.|.+.|+.+.+++ .++||+|+|.++++|++++...++++++++.|+|||++++
T Consensus 184 ~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 184 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 13689999999885433 4689999999999999988788999999999999999987
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-16 Score=145.16 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=81.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|.++..+ ++.+.+|+++|+|+.|++.|+++-. ......|...+.+.+++++++||+|
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l-~~~g~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~~~~~~l~~~~~~fD~I 175 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTI-QEAGVRHLGFEPSSGVAAKAREKGI--------RVRTDFFEKATADDVRRTEGPANVI 175 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHH-HHTTCEEEEECCCHHHHHHHHTTTC--------CEECSCCSHHHHHHHHHHHCCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHH-HHcCCcEEEECCCHHHHHHHHHcCC--------CcceeeechhhHhhcccCCCCEEEE
Confidence 456779999999999999988 5777899999999999999987610 0111112233334444445799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.++++|++++. .+|++++++|+|||.+++..
T Consensus 176 ~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 176 YAANTLCHIPYVQ--SVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp EEESCGGGCTTHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EECChHHhcCCHH--HHHHHHHHHcCCCeEEEEEe
Confidence 9999999998766 99999999999999998753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-16 Score=138.05 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=84.0
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ....+++|+++|+.++++ +++||+|++
T Consensus 78 ~~~~vLD~gcG~G~~~~~l-a~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~-~~~~D~v~~ 150 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQF-ALTGMRVIAIDIDPVKIALARNNAEVY-----GIADKIEFICGDFLLLAS-FLKADVVFL 150 (241)
T ss_dssp CCSEEEETTCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHGG-GCCCSEEEE
T ss_pred CCCEEEECccccCHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHHc-----CCCcCeEEEECChHHhcc-cCCCCEEEE
Confidence 5679999999999999988 577899999999999999999987542 112589999999988763 469999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+.+++|+.+.. ..+.+++++|+|||.+++
T Consensus 151 ~~~~~~~~~~~--~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 151 SPPWGGPDYAT--AETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp CCCCSSGGGGG--SSSBCTTTSCSSCHHHHH
T ss_pred CCCcCCcchhh--hHHHHHHhhcCCcceeHH
Confidence 99998877665 567778888888887543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=122.28 Aligned_cols=109 Identities=10% Similarity=0.011 Sum_probs=84.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 232 (272)
.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++... ....+++++++|+.+++ ..+++||
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~fD 95 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL-----NLIDRVTLIKDGHQNMDKYIDCPVK 95 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-----TCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCCeEEEECCHHHHhhhccCCce
Confidence 466799999999999999885432 249999999999999999987542 12358999999988774 3447899
Q ss_pred eeEechhhh------hc-ChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIG------HL-TDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~------hl-~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|+++..+. +. ...+...+++++.+.|+|||.+++..
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 999887541 11 12244579999999999999988763
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=122.96 Aligned_cols=102 Identities=9% Similarity=0.065 Sum_probs=82.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..++ +...+|+++|+|+.|++.|++++... ....+++++++|+.+......+||+|
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la-~~~~~v~~vD~s~~~~~~a~~~~~~~-----g~~~~v~~~~~d~~~~~~~~~~~D~v 126 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWC-LAGGRAITIEPRADRIENIQKNIDTY-----GLSPRMRAVQGTAPAALADLPLPEAV 126 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEESCTTGGGTTSCCCSEE
T ss_pred CCCCCEEEEecCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCCEEEEeCchhhhcccCCCCCEE
Confidence 4567799999999999999885 66889999999999999999987542 11237999999998843333589999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++...+ +.. +++++.+.|+|||.+++..
T Consensus 127 ~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 127 FIGGGG------SQA-LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp EECSCC------CHH-HHHHHHHHSCTTCEEEEEE
T ss_pred EECCcc------cHH-HHHHHHHhcCCCcEEEEEe
Confidence 988754 233 9999999999999998753
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-15 Score=126.99 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=81.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCC--CceEEEEeCCCCCCCC--CCc-c
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH--KATNFFCVPLQDFTPE--TGR-Y 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~~-f 231 (272)
++.+|||+|||+|.++..++++....|+++|+|+.|++.|++++... .. .+++++++|+.++.+. +++ |
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~~f 126 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL------KCSSEQAEVINQSSLDFLKQPQNQPHF 126 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT------TCCTTTEEEECSCHHHHTTSCCSSCCE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHh------CCCccceEEEECCHHHHHHhhccCCCC
Confidence 35689999999999999876555568999999999999999987542 12 5799999998765332 468 9
Q ss_pred eeeEechhhhhcChhhHHHHHHHH--HHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRA--KENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~--~r~LkpgG~liv~E 269 (272)
|+|+++..++ .. +...+++.+ .++|+|||.+++..
T Consensus 127 D~I~~~~~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~ 163 (201)
T 2ift_A 127 DVVFLDPPFH-FN--LAEQAISLLCENNWLKPNALIYVET 163 (201)
T ss_dssp EEEEECCCSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CEEEECCCCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEE
Confidence 9999988853 33 344888888 56799999987653
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=122.11 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=83.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 232 (272)
++.+|||+|||+|.++..++ +.+ .+++++|+|+.|++.|++++... ...++.++++|+.+++ +++++||
T Consensus 41 ~~~~vLDiGcG~G~~~~~la-~~~p~~~v~gvD~s~~~l~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~D 113 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMA-KQNPDINYIGIDIQKSVLSYALDKVLEV------GVPNIKLLWVDGSDLTDYFEDGEID 113 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHH-HHCTTSEEEEEESCHHHHHHHHHHHHHH------CCSSEEEEECCSSCGGGTSCTTCCS
T ss_pred CCCeEEEEccCcCHHHHHHH-HHCCCCCEEEEEcCHHHHHHHHHHHHHc------CCCCEEEEeCCHHHHHhhcCCCCCC
Confidence 45689999999999999884 553 58999999999999999987532 2358999999998865 4567899
Q ss_pred eeEechhhhhcChh------hHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDD------DFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~------~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++++...+.... ....+++++.+.|+|||.+++.-
T Consensus 114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 99998764322111 12479999999999999987653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=123.43 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=83.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..+ ++. ..+|+++|+|+.|++.|++++... ...++++.++|+.++. +++||+|
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l-~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~--~~~fD~i 129 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAA-HKLGAKSVLATDISDESMTAAEENAALN------GIYDIALQKTSLLADV--DGKFDLI 129 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHH-HHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCCCEEEESSTTTTC--CSCEEEE
T ss_pred cCCCEEEEECCCCCHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEeccccccC--CCCceEE
Confidence 35679999999999999987 465 449999999999999999987532 2234999999998764 3689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.+++| +..+++++.+.|+|||.+++.+
T Consensus 130 ~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 130 VANILAEI-----LLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp EEESCHHH-----HHHHGGGSGGGEEEEEEEEEEE
T ss_pred EECCcHHH-----HHHHHHHHHHhcCCCCEEEEEe
Confidence 99998876 3589999999999999998753
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=132.98 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=88.2
Q ss_pred CeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
.+|||+|||+|.++..++ +.+ .+++++|+ +.|++.|++++... ....+++|..+|+.+ +++ ++||+|++
T Consensus 169 ~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~-~~~-~~~D~v~~ 239 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAIL-QAEPSARGVMLDR-EGSLGVARDNLSSL-----LAGERVSLVGGDMLQ-EVP-SNGDIYLL 239 (334)
T ss_dssp CEEEEETCTTCHHHHHHH-HHCTTCEEEEEEC-TTCTHHHHHHTHHH-----HHTTSEEEEESCTTT-CCC-SSCSEEEE
T ss_pred CEEEEeCCCchHHHHHHH-HHCCCCEEEEeCc-HHHHHHHHHHHhhc-----CCCCcEEEecCCCCC-CCC-CCCCEEEE
Confidence 799999999999999885 553 37999999 99999999886431 112479999999977 333 57999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
.+++||+++++...+++++++.|+|||.+++.|..
T Consensus 240 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 240 SRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred chhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99999999988889999999999999999998754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=123.22 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=81.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC----CCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~----~~~~~ 228 (272)
+.++.+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|+++... ..++.++++|+.+ .++.
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la-~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~v~~~~~d~~~~~~~~~~~- 141 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVA-DIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEYANIV- 141 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHH-HHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGGTTTS-
T ss_pred CCCCCEEEEEcccCCHHHHHHH-HHcCCcEEEEEECCHHHHHHHHHHhhc--------CCCeEEEECCCCCcccccccC-
Confidence 4567799999999999999884 554 6899999999999999988632 2689999999988 6655
Q ss_pred CcceeeEechhhhhcChhh-HHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDD-FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~liv~ 268 (272)
++||+|+ |++++++ ...+++++.+.|+|||.+++.
T Consensus 142 ~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 142 EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 6899999 4555552 247899999999999999873
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=131.16 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=88.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+..+|||+|||+|.++..++ +.++ +++++|+ +.|++.|++++... ....+++|+++|+.+. .+ ..||
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~-~~~~~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~-~~-~~~D 251 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIA-RRAPHVSATVLEM-AGTVDTARSYLKDE-----GLSDRVDVVEGDFFEP-LP-RKAD 251 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-TTHHHHHHHHHHHT-----TCTTTEEEEECCTTSC-CS-SCEE
T ss_pred CccCcEEEEeCCcCcHHHHHHH-HhCCCCEEEEecC-HHHHHHHHHHHHhc-----CCCCceEEEeCCCCCC-CC-CCcc
Confidence 3466799999999999999885 5544 6778888 99999999987432 1234799999998763 23 2599
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++.+++||+++++...+++++++.|+|||.+++.|..
T Consensus 252 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 252 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999999999999988889999999999999999988754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=131.91 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=87.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..++ +.+ .+|+++|+|+ |++.|++++... +...+++++++|+++++++ ++||+|
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~-----~l~~~v~~~~~d~~~~~~~-~~~D~I 120 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAA-QAGARKIYAVEAST-MAQHAEVLVKSN-----NLTDRIVVIPGKVEEVSLP-EQVDII 120 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHH-HTTCSEEEEEECST-HHHHHHHHHHHT-----TCTTTEEEEESCTTTCCCS-SCEEEE
T ss_pred CCcCEEEEcCCCccHHHHHHH-hCCCCEEEEECCHH-HHHHHHHHHHHc-----CCCCcEEEEEcchhhCCCC-CceeEE
Confidence 467799999999999999774 554 5999999996 999999887432 1235799999999998755 589999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++.+.++|+..+....++.++++.|+|||.++.
T Consensus 121 vs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 121 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp EECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence 999999999887777899999999999999874
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=122.90 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=81.6
Q ss_pred CCCCeeeEeecc-cchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcce
Q 024100 156 NQHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcG-tG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 232 (272)
.++.+|||+||| +|.++..++ +. ..+|+++|+|+.|++.|++++... ..+++++++|+..+. .++++||
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la-~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~fD 125 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAE-KFFNCKVTATEVDEEFFEYARRNIERN-------NSNVRLVKSNGGIIKGVVEGTFD 125 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHH-HHHCCEEEEEECCHHHHHHHHHHHHHT-------TCCCEEEECSSCSSTTTCCSCEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHHh-------CCCcEEEeCCchhhhhcccCcee
Confidence 467799999999 999999874 65 789999999999999999987542 227899999975442 2347999
Q ss_pred eeEechhhhhcChhh-----------------HHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDD-----------------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~-----------------~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++..+++..+.+ ...+++++.+.|+|||.+++.
T Consensus 126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 999987765544321 358999999999999998763
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-15 Score=127.90 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=81.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-C--CCCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~f 231 (272)
+..+|||||||+|.++..+ ++.++ .|++||+|+.|++.|++++... ...++.|+++|+.++ + +++++|
T Consensus 34 ~~~~vLDiGcG~G~~~~~l-A~~~p~~~v~giD~s~~~l~~a~~~~~~~------~l~nv~~~~~Da~~~l~~~~~~~~~ 106 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAM-AKDRPEQDFLGIEVHSPGVGACLASAHEE------GLSNLRVMCHDAVEVLHKMIPDNSL 106 (218)
T ss_dssp CCCEEEEESCTTCHHHHHH-HHHCTTSEEEEECSCHHHHHHHHHHHHHT------TCSSEEEECSCHHHHHHHHSCTTCE
T ss_pred CCCeEEEEeeeChHHHHHH-HHHCCCCeEEEEEecHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHHHcCCCCh
Confidence 4568999999999999988 56655 5999999999999999987532 345799999998774 2 456799
Q ss_pred eeeEechhhhhcChhhH------HHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDF------VSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~------~~~l~~~~r~LkpgG~liv~E 269 (272)
|.|++++...+...... ..+++++.++|+|||.+++.-
T Consensus 107 d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 107 RMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp EEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred heEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 99999865433222111 159999999999999987653
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=122.57 Aligned_cols=101 Identities=10% Similarity=0.047 Sum_probs=75.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~ 229 (272)
+.++.+|||+|||+|.++..+ ++.. .+|+++|+|+.|++.+.+.... ..++.++++|+... .+..+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~l-a~~~~~~~V~gvD~s~~~l~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~~ 125 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHL-ADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIVE 125 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHH-HHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTCC
T ss_pred CCCCCEEEEECCcCCHHHHHH-HHHcCCCEEEEEECCHHHHHHHHHHHhc--------CCCeEEEEcCCCCchhhccccc
Confidence 456779999999999999977 4554 5899999999988766554321 23688888888763 22236
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+||+|+++. .++ .+...++++++++|||||.+++.
T Consensus 126 ~fD~V~~~~-~~~---~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 126 KVDLIYQDI-AQK---NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp CEEEEEECC-CST---THHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEec-cCh---hHHHHHHHHHHHHhCCCCEEEEE
Confidence 899999973 222 23335799999999999998875
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=132.41 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=84.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..++ +.+ .+|+++|+| +|++.|++++... ....+++++++|++++++++++||+|
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la-~~g~~~v~gvD~s-~~l~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~fD~I 137 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAA-KAGARKVIGIECS-SISDYAVKIVKAN-----KLDHVVTIIKGKVEEVELPVEKVDII 137 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHH-HTTCSEEEEEECS-THHHHHHHHHHHT-----TCTTTEEEEESCTTTCCCSSSCEEEE
T ss_pred CCCCEEEEEeccchHHHHHHH-HCCCCEEEEECcH-HHHHHHHHHHHHc-----CCCCcEEEEECcHHHccCCCCceEEE
Confidence 356799999999999999774 654 499999999 5999999987532 22346999999999987776899999
Q ss_pred EechhhhhcC-hhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLT-DDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~-d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++.++.+++. ...+..++..+.++|+|||.++.
T Consensus 138 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 138 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 9987655542 24455899999999999999863
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-15 Score=127.72 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=81.6
Q ss_pred CCCCeeeEeecccchHHHHHHH-hcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC---CCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa-~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~f 231 (272)
.++.+|||+|||+|.++..++. ....+|+++|+|+.|++.|++++... ...+++++++|++++++. +++|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~f 142 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL------QLENTTFCHDRAETFGQRKDVRESY 142 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEESCHHHHTTCTTTTTCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCEEEEeccHHHhcccccccCCc
Confidence 3567999999999999997742 23568999999999999999987532 234699999999877542 4689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++..+ .+ +..+++.+.++|+|||.+++..
T Consensus 143 D~V~~~~~----~~--~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 143 DIVTARAV----AR--LSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp EEEEEECC----SC--HHHHHHHHGGGEEEEEEEEEEE
T ss_pred cEEEEecc----CC--HHHHHHHHHHhcCCCCEEEEEe
Confidence 99999763 23 4589999999999999998754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=123.27 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=81.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++... . +++++++|+.+..+.+++||+|
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l-~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~-~v~~~~~d~~~~~~~~~~fD~v 138 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALI-AEIVDKVVSVEINEKMYNYASKLLSYY-------N-NIKLILGDGTLGYEEEKPYDRV 138 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHH-HHHSSEEEEEESCHHHHHHHHHHHTTC-------S-SEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHH-HHHcCEEEEEeCCHHHHHHHHHHHhhc-------C-CeEEEECCcccccccCCCccEE
Confidence 456779999999999999977 466789999999999999999987431 2 7999999997733334689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++|+.+ ++.+.|+|||.+++..
T Consensus 139 ~~~~~~~~~~~--------~~~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 139 VVWATAPTLLC--------KPYEQLKEGGIMILPI 165 (231)
T ss_dssp EESSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred EECCcHHHHHH--------HHHHHcCCCcEEEEEE
Confidence 99999999863 5789999999988764
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=124.22 Aligned_cols=105 Identities=11% Similarity=0.243 Sum_probs=81.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 232 (272)
+..+|||||||+|.++..++ +. ..++++||+|+.|++.|++++... ...++.++++|+.+++ +++++||
T Consensus 38 ~~~~vLDiGcG~G~~~~~la-~~~p~~~v~giD~s~~~l~~a~~~~~~~------~~~nv~~~~~d~~~l~~~~~~~~~d 110 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMA-KQNPDINYIGIELFKSVIVTAVQKVKDS------EAQNVKLLNIDADTLTDVFEPGEVK 110 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHH-HHCTTSEEEEECSCHHHHHHHHHHHHHS------CCSSEEEECCCGGGHHHHCCTTSCC
T ss_pred CCceEEEEecCCCHHHHHHH-HHCCCCCEEEEEechHHHHHHHHHHHHc------CCCCEEEEeCCHHHHHhhcCcCCcC
Confidence 45689999999999999884 55 458999999999999999987532 2357999999998754 4557899
Q ss_pred eeEechhhhhcChh------hHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDD------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.|++++...+.... ....+++++.++|+|||.+++.
T Consensus 111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~ 152 (213)
T 2fca_A 111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 152 (213)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence 99987643222110 0247999999999999998765
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=129.36 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=83.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+|||+|||+|.++..+ ++.+ .+|+++|+|+ |++.|++++... ....+++++++|++++++++++||+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~l-a~~g~~~v~gvD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~D~ 134 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFA-AKAGAKKVLGVDQSE-ILYQAMDIIRLN-----KLEDTITLIKGKIEEVHLPVEKVDV 134 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHH-HHTTCSEEEEEESST-HHHHHHHHHHHT-----TCTTTEEEEESCTTTSCCSCSCEEE
T ss_pred hcCCCEEEEeeccCcHHHHHH-HHcCCCEEEEEChHH-HHHHHHHHHHHc-----CCCCcEEEEEeeHHHhcCCCCcEEE
Confidence 356779999999999999977 4654 4899999996 999999887532 1236899999999998776679999
Q ss_pred eEech---hhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 234 IWVQW---CIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 234 Ivs~~---vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
|++.+ .++|. ..+..++.++.+.|+|||.++
T Consensus 135 Ivs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 135 IISEWMGYFLLFE--SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEECCCBTTBTTT--CHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEcCchhhccCH--HHHHHHHHHHHhhcCCCcEEE
Confidence 99877 34443 344589999999999999987
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=123.92 Aligned_cols=107 Identities=16% Similarity=0.182 Sum_probs=79.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.+.++..... ......+++|+++|++++++.+++ |.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la-~~~p~~~v~gvD~s~~~l~~~~~~a~~~~--~~~~~~~v~~~~~d~~~l~~~~~~-d~ 101 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVA-RQNPSRLVVALDADKSRMEKISAKAAAKP--AKGGLPNLLYLWATAERLPPLSGV-GE 101 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHH-HHCTTEEEEEEESCGGGGHHHHHHHTSCG--GGTCCTTEEEEECCSTTCCSCCCE-EE
T ss_pred cCCCEEEEecCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHhh--hhcCCCceEEEecchhhCCCCCCC-CE
Confidence 456799999999999999884 65 4689999999999996433221100 012345899999999998876555 66
Q ss_pred eE---echhh--hhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IW---VQWCI--GHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Iv---s~~vl--~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+ +...+ ||++++. .+|+++.++|+|||.+++.
T Consensus 102 v~~~~~~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 102 LHVLMPWGSLLRGVLGSSP--EMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp EEEESCCHHHHHHHHTSSS--HHHHHHHHTEEEEEEEEEE
T ss_pred EEEEccchhhhhhhhccHH--HHHHHHHHHcCCCcEEEEE
Confidence 55 33344 3777777 9999999999999999874
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=126.14 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=80.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CC--CCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~--~~~~~ 230 (272)
.+..+|||||||+|.++..+ ++.+ ..|+|||+|+.|++.|++++...+........++.++++|+.+ ++ +++++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~l-a~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVEL-SPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHH-GGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHH-HHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 35568999999999999987 5664 4799999999999999887532110001134689999999987 44 45679
Q ss_pred ceeeEechhhhhcChhh------HHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDD------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~------~~~~l~~~~r~LkpgG~liv~ 268 (272)
||.|++++.-.+..... ...+|+++.++|+|||.|++.
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 99999765432211000 136999999999999998764
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=142.89 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=85.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fDlI 234 (272)
++.+|||||||+|.++..| ++.+.+|+|||+|+.+|+.|+...... ...+++|.+++++++ ..++++||+|
T Consensus 66 ~~~~vLDvGCG~G~~~~~l-a~~ga~V~giD~~~~~i~~a~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSL-ASKGATIVGIDFQQENINVCRALAEEN------PDFAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp SCCEEEEETCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTS------TTSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCeEEEECCCCcHHHHHH-HhCCCEEEEECCCHHHHHHHHHHHHhc------CCCceEEEECCHHHHhhhccCCCccEE
Confidence 5679999999999999988 688999999999999999999876421 234799999999887 3445789999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|..+|+|++|++....+..+.+.|+++|..++
T Consensus 139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~ 171 (569)
T 4azs_A 139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI 171 (569)
T ss_dssp EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred EECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence 999999999988744555667777888775443
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=132.77 Aligned_cols=100 Identities=13% Similarity=0.307 Sum_probs=83.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.+..+|||||||+|.++..++ +.++ +++++|. +.|++.|++ ..+++|+.+|+.+ +.+. . |
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~p~-~-D 263 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIV-AKYPSINAINFDL-PHVIQDAPA------------FSGVEHLGGDMFD-GVPK-G-D 263 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCC-C-S
T ss_pred ccCCCEEEEeCCCcCHHHHHHH-HhCCCCEEEEEeh-HHHHHhhhh------------cCCCEEEecCCCC-CCCC-C-C
Confidence 4566899999999999999885 5544 6788899 888876643 2479999999987 4443 3 9
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++.+++||+++++..++|++++++|+|||.+++.|.+
T Consensus 264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 264 AIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp EEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999999999999998889999999999999999998864
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=130.29 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=89.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcE--EEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEV--DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v--~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.....+|+|||||+|.++..++ +.++++ ++.|. +.+++.|++.+.. ....+++|..+|+.+.++ ..+|
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~-~~~p~~~~~~~dl-p~v~~~a~~~~~~------~~~~rv~~~~gD~~~~~~--~~~D 246 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECM-SLYPGCKITVFDI-PEVVWTAKQHFSF------QEEEQIDFQEGDFFKDPL--PEAD 246 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHH-HHCSSCEEEEEEC-HHHHHHHHHHSCC--------CCSEEEEESCTTTSCC--CCCS
T ss_pred cccCCeEEeeCCCCCHHHHHHH-HhCCCceeEeccC-HHHHHHHHHhhhh------cccCceeeecCccccCCC--CCce
Confidence 4456799999999999999884 777755 45565 8899999998753 235789999999976543 3589
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSLI 272 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~~ 272 (272)
+|++.++||+++|++..++|+++++.|+|||.+++.|.++
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence 9999999999999998999999999999999999998764
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=132.23 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=87.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..++.+|||+|||+|.++..+ ++.+. +|++||+| .|++.|++++... ....+++++++|+++++++ ++||+
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~l-a~~g~~~V~gvD~s-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~-~~~D~ 132 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWS-AQAGARKVYAVEAT-KMADHARALVKAN-----NLDHIVEVIEGSVEDISLP-EKVDV 132 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHH-HHTTCSEEEEEESS-TTHHHHHHHHHHT-----TCTTTEEEEESCGGGCCCS-SCEEE
T ss_pred cCCCCEEEEeccCcCHHHHHH-HhcCCCEEEEEccH-HHHHHHHHHHHHc-----CCCCeEEEEECchhhcCcC-CcceE
Confidence 456789999999999999977 46655 99999999 9999999987532 2235699999999998766 79999
Q ss_pred eEechhhhhcCh-hhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTD-DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++.++.+++.. ..+..+++.+.+.|+|||.++..+
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 999887666643 346689999999999999997654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=121.82 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=72.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ..+++++|+|+. ++++.++|+.++++++++||+|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~---------------------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI----RNPVHCFDLASL---------------------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS---------------------STTEEESCTTSCSCCTTCEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC---------------------CceEEEeccccCCCCCCCEeEEE
Confidence 45679999999999999866 268999999886 24678899988877677999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.++|| .+ ...+|+++.++|+|||.+++.+
T Consensus 121 ~~~~l~~-~~--~~~~l~~~~~~L~~gG~l~i~~ 151 (215)
T 2zfu_A 121 FCLSLMG-TN--IRDFLEEANRVLKPGGLLKVAE 151 (215)
T ss_dssp EESCCCS-SC--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eehhccc-cC--HHHHHHHHHHhCCCCeEEEEEE
Confidence 9999964 44 4499999999999999999875
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.8e-15 Score=125.14 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=81.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|-++..++ .. ..++.++|+|+.|++.+++++... +...++++ .|..... ++++||+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~-~~~p~a~~~A~Di~~~~leiar~~~~~~-----g~~~~v~~--~d~~~~~-~~~~~Dv 118 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQW-NENEKIIYHAYDIDRAEIAFLSSIIGKL-----KTTIKYRF--LNKESDV-YKGTYDV 118 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHH-CSSCCCEEEEECSCHHHHHHHHHHHHHS-----CCSSEEEE--ECCHHHH-TTSEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHH-hcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCccEEE--ecccccC-CCCCcCh
Confidence 467899999999999999774 44 448999999999999999998542 11225555 6665443 3478999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++..++||+.+.+ ..+.++.+.|+|||.||--+
T Consensus 119 VLa~k~LHlL~~~~--~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 119 VFLLKMLPVLKQQD--VNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp EEEETCHHHHHHTT--CCHHHHHHTCEEEEEEEEEE
T ss_pred hhHhhHHHhhhhhH--HHHHHHHHHhCCCCEEEEeC
Confidence 99999999994444 67779999999999998765
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=130.69 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=82.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.+..+|||||||+|.++..++ +.++ +++++|. +.++. +++... .....+++|..+|+.+. .+ +||
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~--~~~~~~-----~~~~~~v~~~~~d~~~~--~p-~~D 249 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVL-REHPGLQGVLLDR-AEVVA--RHRLDA-----PDVAGRWKVVEGDFLRE--VP-HAD 249 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHH-HHCTTEEEEEEEC-HHHHT--TCCCCC-----GGGTTSEEEEECCTTTC--CC-CCS
T ss_pred ccCCceEEEECCccCHHHHHHH-HHCCCCEEEEecC-HHHhh--cccccc-----cCCCCCeEEEecCCCCC--CC-CCc
Confidence 4567899999999999999885 6555 5677888 44554 333221 12245799999999632 22 899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++.+++||+++++..++|++++++|+|||.+++.|.+
T Consensus 250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred EEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999999999998889999999999999999998754
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=132.34 Aligned_cols=100 Identities=13% Similarity=0.270 Sum_probs=84.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..+..+|||||||+|.++..++ +.++ +++++|. +.|++.|++ ..+++|+.+|+.+ +.+. . |
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~-~~p~-~-D 261 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIA-AHYPTIKGVNFDL-PHVISEAPQ------------FPGVTHVGGDMFK-EVPS-G-D 261 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCC-C-S
T ss_pred ccCCCEEEEeCCCCCHHHHHHH-HHCCCCeEEEecC-HHHHHhhhh------------cCCeEEEeCCcCC-CCCC-C-C
Confidence 4466799999999999999885 5544 6788899 888876643 2479999999987 4444 3 9
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++.+++||+++++..++|++++++|+|||.+++.|.+
T Consensus 262 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999999999999999899999999999999999998864
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.4e-14 Score=127.42 Aligned_cols=103 Identities=15% Similarity=0.213 Sum_probs=83.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..+ ++.+ .+|+++|+| .|++.|++++... ....+++++++|++++++++++||+|+
T Consensus 38 ~~~~VLDiGcGtG~ls~~l-a~~g~~~v~~vD~s-~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~D~Iv 110 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFA-AKHGAKHVIGVDMS-SIIEMAKELVELN-----GFSDKITLLRGKLEDVHLPFPKVDIII 110 (328)
T ss_dssp TTCEEEEETCTTSHHHHHH-HHTCCSEEEEEESS-THHHHHHHHHHHT-----TCTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred CCCEEEEecCccHHHHHHH-HHCCCCEEEEEChH-HHHHHHHHHHHHc-----CCCCCEEEEECchhhccCCCCcccEEE
Confidence 5669999999999999977 4654 489999999 6999999887532 223579999999999876657999999
Q ss_pred echhhhhcC-hhhHHHHHHHHHHhcccCcEEE
Q 024100 236 VQWCIGHLT-DDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 236 s~~vl~hl~-d~~~~~~l~~~~r~LkpgG~li 266 (272)
+.+..+++. ...+..++.++.+.|+|||.++
T Consensus 111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 987655543 2345589999999999999987
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=133.50 Aligned_cols=99 Identities=10% Similarity=0.172 Sum_probs=82.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.+..+|||||||+|.++..++ +.++ +++++|+ +.|++.|++ ..+++|+.+|+.+ +++ . ||
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~-~~~~~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~~-~-~D 269 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELII-SKYPLIKGINFDL-PQVIENAPP------------LSGIEHVGGDMFA-SVP-Q-GD 269 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCC-C-EE
T ss_pred cCCCCEEEEeCCCCcHHHHHHH-HHCCCCeEEEeCh-HHHHHhhhh------------cCCCEEEeCCccc-CCC-C-CC
Confidence 3466799999999999999885 6655 4566799 889876653 1369999999977 444 3 99
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|++.++|||+++++...+|++++++|+|||.+++.|.
T Consensus 270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999999999888999999999999999998763
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-14 Score=122.11 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=80.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..++++...+|+++|.|+.|++.|++++... ...+++++++|+.++ +...++||+|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~------~~~~v~~~~~D~~~~~~~~~~~fD~V~ 127 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL------KAGNARVVNSNAMSFLAQKGTPHNIVF 127 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHhhcCCCCCEEE
Confidence 35699999999999999876555569999999999999999987542 225799999998774 33446899999
Q ss_pred echhhhhcChhhHHHHHHHHHH--hcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKE--NIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r--~LkpgG~liv~ 268 (272)
++..++ .. ....+++.+.+ +|+|||.+++.
T Consensus 128 ~~~p~~-~~--~~~~~l~~l~~~~~L~pgG~l~i~ 159 (202)
T 2fpo_A 128 VDPPFR-RG--LLEETINLLEDNGWLADEALIYVE 159 (202)
T ss_dssp ECCSSS-TT--THHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ECCCCC-CC--cHHHHHHHHHhcCccCCCcEEEEE
Confidence 987753 33 33478888876 49999998765
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.5e-14 Score=114.86 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=83.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..++ +.+.+|+++|+|+.+++.+++++... ....+++++++|+.+..+..++||+|
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~-~~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~D~v 104 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELA-GRVRRVYAIDRNPEAISTTEMNLQRH-----GLGDNVTLMEGDAPEALCKIPDIDIA 104 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHT-----TCCTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHH-HhcCEEEEEECCHHHHHHHHHHHHHc-----CCCcceEEEecCHHHhcccCCCCCEE
Confidence 4567799999999999999884 66689999999999999999987532 12257899999987621222589999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++..+++| +..+++++.+.|+|||.+++..
T Consensus 105 ~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCchHH-----HHHHHHHHHHhcCCCcEEEEEe
Confidence 99988765 3589999999999999998754
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-14 Score=120.28 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=80.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|++++... ...++++.++|+....+..++|
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~~~~~f 147 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTA-EIVGEDGLVVSIERIPELAEKAERTLRKL------GYDNVIVIVGDGTLGYEPLAPY 147 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHHCTTSEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEESCGGGCCGGGCCE
T ss_pred CCCCCEEEEECCCccHHHHHHH-HHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccCCCCCCCe
Confidence 4567799999999999999885 544 68999999999999999987432 2346899999985443334689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++..+++|+. .++.+.|+|||.+++.
T Consensus 148 D~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~ 176 (215)
T 2yxe_A 148 DRIYTTAAGPKIP--------EPLIRQLKDGGKLLMP 176 (215)
T ss_dssp EEEEESSBBSSCC--------HHHHHTEEEEEEEEEE
T ss_pred eEEEECCchHHHH--------HHHHHHcCCCcEEEEE
Confidence 9999999999986 3679999999998765
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=129.06 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=82.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCc---EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~---v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|.++..+ ++.+.. |+++|+|+.|++.|++++... ...++++.++|+.+..+..++|
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~l-a~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------g~~~v~~~~~d~~~~~~~~~~f 145 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVM-SRVVGEKGLVVSVEYSRKICEIAKRNVERL------GIENVIFVCGDGYYGVPEFSPY 145 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHH-HHHHCTTCEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCGGGCCE
T ss_pred CCCcCEEEEecCCchHHHHHH-HHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCeEEEECChhhccccCCCe
Confidence 456789999999999999977 465555 999999999999999987532 2346999999998765445789
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++..+++|+. +++.+.|+|||.+++..
T Consensus 146 D~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 146 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp EEEEECSBBSCCC--------HHHHHHEEEEEEEEEEB
T ss_pred EEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEE
Confidence 9999999999986 46788999999998753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=121.77 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=81.6
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD 232 (272)
++.+|||+|||+|..+..++ +. ..+|+++|+|+.|++.|++++... ....+++++++|+.++.+ .+++||
T Consensus 71 ~~~~vLDiG~G~G~~~~~la-~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~fD 144 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFA-SISDDIHVTTIERNETMIQYAKQNLATY-----HFENQVRIIEGNALEQFENVNDKVYD 144 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHH-TTCTTCEEEEEECCHHHHHHHHHHHHHT-----TCTTTEEEEESCGGGCHHHHTTSCEE
T ss_pred CCCEEEEEeCchhHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEECCHHHHHHhhccCCcc
Confidence 46699999999999999885 53 569999999999999999988543 123489999999977633 246899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++.... .....+++++.+.|+|||.+++.
T Consensus 145 ~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 145 MIFIDAAK-----AQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp EEEEETTS-----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEcCcH-----HHHHHHHHHHHHhcCCCeEEEEe
Confidence 99977543 33558999999999999999873
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-14 Score=118.01 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=80.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++... ....+++++++|+.++ +..+++||+|
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~fD~i 104 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT-----KAENRFTLLKMEAERAIDCLTGRFDLV 104 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT-----TCGGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCceEEEECcHHHhHHhhcCCCCEE
Confidence 356799999999999999885332469999999999999999987532 1224799999998774 2233579999
Q ss_pred EechhhhhcChhhHHHHHHHHH--HhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAK--ENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~--r~LkpgG~liv~E 269 (272)
+++..+++ .....+++.+. ++|+|||.+++..
T Consensus 105 ~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~ 138 (177)
T 2esr_A 105 FLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCET 138 (177)
T ss_dssp EECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEE
Confidence 99877643 22346777776 9999999988653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-14 Score=129.64 Aligned_cols=98 Identities=15% Similarity=0.291 Sum_probs=83.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.+..+|||||||+|.++..++ +.++ +++++|+ +.|++.|++. .+++|..+|+.+ +.+ .||+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~p--~~D~ 249 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIIC-ETFPKLKCIVFDR-PQVVENLSGS------------NNLTYVGGDMFT-SIP--NADA 249 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHTTCCCB------------TTEEEEECCTTT-CCC--CCSE
T ss_pred ccCceEEEeCCCccHHHHHHH-HHCCCCeEEEeeC-HHHHhhcccC------------CCcEEEeccccC-CCC--CccE
Confidence 456799999999999999885 5543 7999999 9998877541 359999999966 333 3999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhccc---CcEEEEecC
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIAR---SGTFLLSHS 270 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~Lkp---gG~liv~E~ 270 (272)
|++.+++||+++++...+|++++++|+| ||.+++.|.
T Consensus 250 v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred EEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 9999999999998888999999999999 999998874
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-14 Score=121.96 Aligned_cols=104 Identities=11% Similarity=0.155 Sum_probs=81.1
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CC-C----
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TP-E---- 227 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~-~---- 227 (272)
++.+|||+|||+|..+..++ +. ..+|+++|+|+.|++.|++++... ....+++++++|+.++ +. .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~l~~~~~~~~ 131 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMA-RLLQPGARLLTMEINPDCAAITQQMLNFA-----GLQDKVTILNGASQDLIPQLKKKYD 131 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHH-TTSCTTCEEEEEESCHHHHHHHHHHHHHH-----TCGGGEEEEESCHHHHGGGTTTTSC
T ss_pred CCCEEEEECCCCCHHHHHHH-HhCCCCCEEEEEeCChHHHHHHHHHHHHc-----CCCCceEEEECCHHHHHHHHHHhcC
Confidence 45699999999999999884 53 458999999999999999987543 1234699999997543 21 1
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.++||+|++....++..+. ..++..+ +.|+|||.+++.+
T Consensus 132 ~~~fD~V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 132 VDTLDMVFLDHWKDRYLPD--TLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp CCCCSEEEECSCGGGHHHH--HHHHHHT-TCCCTTCEEEESC
T ss_pred CCceEEEEEcCCcccchHH--HHHHHhc-cccCCCeEEEEeC
Confidence 1589999998877665333 3788888 9999999998754
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-14 Score=117.51 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=80.4
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++ .. ..+++++|+|+.|++.|++++... ...+++++++|+.++++ .++||+|
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~-~~~~D~i 136 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLS-IVRPEAHFTLLDSLGKRVRFLRQVQHEL------KLENIEPVQSRVEEFPS-EPPFDGV 136 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHH-HHCTTSEEEEEESCHHHHHHHHHHHHHT------TCSSEEEEECCTTTSCC-CSCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEecchhhCCc-cCCcCEE
Confidence 35699999999999999885 54 459999999999999999987532 23459999999988763 4689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.+ .+ ...+++++.+.|+|||.+++..
T Consensus 137 ~~~~~----~~--~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 137 ISRAF----AS--LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ECSCS----SS--HHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEecc----CC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 98643 22 4489999999999999988763
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-14 Score=121.61 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=80.8
Q ss_pred CCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCC-CceEEEEeCCCCCC--CCCCcce
Q 024100 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFT--PETGRYD 232 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~fD 232 (272)
..+|||+|||+|..+..++... ..+|+++|+|+.|++.|++++... +.. .+++++++|+.++. ..+++||
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----g~~~~~i~~~~gda~~~l~~~~~~~fD 131 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA-----GYSPSRVRFLLSRPLDVMSRLANDSYQ 131 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT-----TCCGGGEEEECSCHHHHGGGSCTTCEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCcCcEEEEEcCHHHHHHHhcCCCcC
Confidence 3489999999999999885332 468999999999999999998643 122 58999999987653 2247999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++.... .....+++++.+.|+|||.+++.+
T Consensus 132 ~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 132 LVFGQVSP-----MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp EEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred eEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 99987653 234579999999999999998754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-14 Score=125.32 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHhccCCCccCCCCCeeeEeeccc--chHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCC
Q 024100 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (272)
Q Consensus 136 ~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGt--G~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~ 211 (272)
...+.|+...+..... ......|||||||+ +..+..++.+. ..+|++||.|+.||+.|++++... ..
T Consensus 60 ~~nr~fl~rav~~l~~---~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~------~~ 130 (277)
T 3giw_A 60 RANRDWMNRAVAHLAK---EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST------PE 130 (277)
T ss_dssp HHHHHHHHHHHHHHHH---TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC------SS
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC------CC
Confidence 4456777766553221 01235899999997 44445464443 458999999999999999998531 23
Q ss_pred CceEEEEeCCCCCCC----C--CCcce-----eeEechhhhhcChhh-HHHHHHHHHHhcccCcEEEEec
Q 024100 212 KATNFFCVPLQDFTP----E--TGRYD-----VIWVQWCIGHLTDDD-FVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 212 ~~v~~~~~d~~~~~~----~--~~~fD-----lIvs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+++|+++|+.++.. + .+.|| .|+++.+|||+++.+ ...+++++.+.|+|||+|++++
T Consensus 131 ~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 131 GRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp SEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred CcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 479999999987521 0 13455 588999999999865 4689999999999999999874
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-14 Score=117.29 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=78.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD 232 (272)
++.+|||+|||+|.++..+ ++.++.|+++|+|+.|++.|++++... .. +++++++|+.++.+ ..++||
T Consensus 41 ~~~~vLD~GcG~G~~~~~l-~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~~~~~~~~~~~~D 112 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEA-ASEGWEAVLVEKDPEAVRLLKENVRRT------GL-GARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp TCCEEEEETCSSCHHHHHH-HHTTCEEEEECCCHHHHHHHHHHHHHH------TC-CCEEECSCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCcCHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHHc------CC-ceEEEeccHHHHHHhhhccCCceE
Confidence 4569999999999999988 577778999999999999999987532 12 78999999876421 123799
Q ss_pred eeEechhhhhcChhhHHHHHHHHH--HhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAK--ENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~--r~LkpgG~liv~E 269 (272)
+|+++.+++ .+.+ .+++.+. ++|+|||.+++.-
T Consensus 113 ~i~~~~~~~--~~~~--~~~~~~~~~~~L~~gG~~~~~~ 147 (171)
T 1ws6_A 113 VAFMAPPYA--MDLA--ALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EEEECCCTT--SCTT--HHHHHHHHHTCEEEEEEEEEEE
T ss_pred EEEECCCCc--hhHH--HHHHHHHhhcccCCCcEEEEEe
Confidence 999998765 3333 5666666 9999999987653
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.5e-14 Score=123.28 Aligned_cols=108 Identities=16% Similarity=0.060 Sum_probs=83.7
Q ss_pred CC-CCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCc
Q 024100 155 NN-QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (272)
Q Consensus 155 ~~-~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 230 (272)
.. ++.+|||+|||+|.++..+ ++.++ +|+++|+++.|++.|++++... ....+++++++|+.++. +++++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~l-a~~~~~~v~gvDi~~~~~~~a~~n~~~~-----~~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLL-STRTKAKIVGVEIQERLADMAKRSVAYN-----QLEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHH-HTTCCCEEEEECCSHHHHHHHHHHHHHT-----TCTTTEEEECSCGGGGGGTSCTTC
T ss_pred CCCCCCEEEEcCCchhHHHHHH-HHhcCCcEEEEECCHHHHHHHHHHHHHC-----CCcccEEEEECcHHHhhhhhccCC
Confidence 34 6779999999999999977 46655 9999999999999999987542 12346999999998875 23579
Q ss_pred ceeeEechhhhhc------------------ChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHL------------------TDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl------------------~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
||+|+++-.+.+. ....+..+++.+.+.|+|||.+++.
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 9999997544322 1134568999999999999998764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-14 Score=121.75 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=83.0
Q ss_pred CCCeeeEeecccchHHHHHHHhc----CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCc-------------------
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA------------------- 213 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~----~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~------------------- 213 (272)
++.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.|++++...... .....
T Consensus 51 ~~~~vLD~gcGsG~~~~~la-~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 127 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLG-LLHRRSLRQVIASDVDPAPLELAAKNLALLSPA--GLTARELERREQSERFGKPSYLEA 127 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHH-HHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHH--HHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHhccCCCeEEEEECCHHHHHHHHHHHHHhhhc--cccccchhhhhhhhhcccccchhh
Confidence 56799999999999999885 44 458999999999999999876431000 00001
Q ss_pred ------eE-------------EEEeCCCCCCC-----CCCcceeeEechhhhhcCh-------hhHHHHHHHHHHhcccC
Q 024100 214 ------TN-------------FFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKENIARS 262 (272)
Q Consensus 214 ------v~-------------~~~~d~~~~~~-----~~~~fDlIvs~~vl~hl~d-------~~~~~~l~~~~r~Lkpg 262 (272)
++ |.++|+.+... ..++||+|+++..+++..+ .....+++++.++|+||
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 207 (250)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence 56 99999987542 2348999999987776654 44568999999999999
Q ss_pred cEEEEec
Q 024100 263 GTFLLSH 269 (272)
Q Consensus 263 G~liv~E 269 (272)
|.+++..
T Consensus 208 G~l~~~~ 214 (250)
T 1o9g_A 208 AVIAVTD 214 (250)
T ss_dssp CEEEEEE
T ss_pred cEEEEeC
Confidence 9988753
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=120.97 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=81.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-------C
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------P 226 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-------~ 226 (272)
.++.+|||+|||+|.++..++ +.+ .+|++||+++.|++.|++++..... .....+++++++|+.++. +
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la-~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~--~~l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVA-ARLEKAEVTLYERSQEMAEFARRSLELPDN--AAFSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHH-HHCTTEEEEEEESSHHHHHHHHHHTTSGGG--TTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred cCCCEEEEeCChHhHHHHHHH-HhCCCCeEEEEECCHHHHHHHHHHHHhhhh--CCCcceEEEEeCCHHHHhhhhhhhcc
Confidence 456799999999999999774 654 4899999999999999999753000 012236999999998872 3
Q ss_pred CCCcceeeEechhhh----------------hcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIG----------------HLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~----------------hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++++||+|+++-.+. |.....+..+++.+.+.|+|||.+++.
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 456899999983321 222334668999999999999998753
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.1e-14 Score=115.73 Aligned_cols=94 Identities=20% Similarity=0.116 Sum_probs=77.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+ +|+++|+|+.|++. . .+++++++|+.+. .++++||+|++
T Consensus 23 ~~~~vLD~GcG~G~~~~~l-~~~~-~v~gvD~s~~~~~~----~-----------~~~~~~~~d~~~~-~~~~~fD~i~~ 84 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQL-RKRN-TVVSTDLNIRALES----H-----------RGGNLVRADLLCS-INQESVDVVVF 84 (170)
T ss_dssp CSCEEEEETCTTCHHHHHH-TTTS-EEEEEESCHHHHHT----C-----------SSSCEEECSTTTT-BCGGGCSEEEE
T ss_pred CCCeEEEeccCccHHHHHH-HhcC-cEEEEECCHHHHhc----c-----------cCCeEEECChhhh-cccCCCCEEEE
Confidence 4569999999999999977 5777 99999999999987 1 2578999999874 33479999999
Q ss_pred chhhhhcChh-------hHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDD-------DFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~-------~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+..+++.++. +...+++++.+.| |||.+++.+
T Consensus 85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence 9998876554 3347899999999 999998754
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=120.96 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=78.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++ +. +.+|+++|+|+.|++.|+++. .++.+..+|++++++.+++||+|
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~-~~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v 152 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFA-DALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMDAI 152 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHH-HTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcchhhCCCCCCceeEE
Confidence 56799999999999999885 54 569999999999999999874 35789999999887777899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.++. .+++++.++|+|||.+++..
T Consensus 153 ~~~~~~---------~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 153 IRIYAP---------CKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp EEESCC---------CCHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCh---------hhHHHHHHhcCCCcEEEEEE
Confidence 987652 36899999999999988764
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-14 Score=118.19 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=80.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f 231 (272)
.++.+|||+|||+|.++..++.....+|+++|+|+.|++.|++++... ....+++++++|+.++.. .+++|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~f 117 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT-----KEPEKFEVRKMDANRALEQFYEEKLQF 117 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH-----TCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh-----CCCcceEEEECcHHHHHHHHHhcCCCC
Confidence 356799999999999999885433469999999999999999987532 112479999999876432 14689
Q ss_pred eeeEechhhhhcChhhHHHHHHHH--HHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRA--KENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~--~r~LkpgG~liv~ 268 (272)
|+|+++..+++ .+. ..+++.+ .++|+|||.+++.
T Consensus 118 D~i~~~~~~~~-~~~--~~~~~~l~~~~~L~~gG~l~~~ 153 (187)
T 2fhp_A 118 DLVLLDPPYAK-QEI--VSQLEKMLERQLLTNEAVIVCE 153 (187)
T ss_dssp EEEEECCCGGG-CCH--HHHHHHHHHTTCEEEEEEEEEE
T ss_pred CEEEECCCCCc-hhH--HHHHHHHHHhcccCCCCEEEEE
Confidence 99999988543 222 2566666 7889999998764
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=118.95 Aligned_cols=89 Identities=8% Similarity=0.095 Sum_probs=76.3
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---CCCc
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGR 230 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~ 230 (272)
+..++.+|||+|||. | .+|+|+.|++.|+++.. .++++.++|++++++ ++++
T Consensus 9 g~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~----------~~~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTG----------NEGRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp TCCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTT----------TTSEEEEEEGGGGGGGCCCSSC
T ss_pred CCCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhcc----------cCcEEEEechhcCccccCCCCC
Confidence 356788999999996 1 38999999999999862 248999999998876 5679
Q ss_pred ceeeEechhhhhc-ChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 231 YDVIWVQWCIGHL-TDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 231 fDlIvs~~vl~hl-~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
||+|++++++||+ ++.+ .+|++++++|+|||.+++.+
T Consensus 64 fD~V~~~~~l~~~~~~~~--~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 64 FDIILSGLVPGSTTLHSA--EILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp EEEEEECCSTTCCCCCCH--HHHHHHHHHEEEEEEEEEEE
T ss_pred EeEEEECChhhhcccCHH--HHHHHHHHHCCCCEEEEEEc
Confidence 9999999999999 7766 99999999999999998754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=117.15 Aligned_cols=108 Identities=7% Similarity=-0.047 Sum_probs=83.2
Q ss_pred cCCCccCCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--
Q 024100 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (272)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-- 224 (272)
.+...++.++.+|||+|||+|.++..++...++ .|+++|+|+.|++.++++... ..|+..+..|....
T Consensus 69 gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~--------~~ni~~V~~d~~~p~~ 140 (233)
T 4df3_A 69 GLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--------RRNIFPILGDARFPEK 140 (233)
T ss_dssp TCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT--------CTTEEEEESCTTCGGG
T ss_pred chhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh--------hcCeeEEEEeccCccc
Confidence 333345788999999999999999988433343 799999999999999988642 35888888888653
Q ss_pred -CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 225 -~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+...+++|+|++... |..+. ..++.++++.|||||.+++.
T Consensus 141 ~~~~~~~vDvVf~d~~--~~~~~--~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 141 YRHLVEGVDGLYADVA--QPEQA--AIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp GTTTCCCEEEEEECCC--CTTHH--HHHHHHHHHHEEEEEEEEEE
T ss_pred cccccceEEEEEEecc--CChhH--HHHHHHHHHhccCCCEEEEE
Confidence 233468999987543 33334 48999999999999998875
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=112.22 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=81.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..++ +...+++++|+|+.|++.|++++... ...+++++++|+.+ ++++++||+|
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~-~~~~~~~D~i 104 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIA-KRCKFVYAIDYLDGAIEVTKQNLAKF------NIKNCQIIKGRAED-VLDKLEFNKA 104 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHH-TTSSEEEEEECSHHHHHHHHHHHHHT------TCCSEEEEESCHHH-HGGGCCCSEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHc------CCCcEEEEECCccc-cccCCCCcEE
Confidence 3466799999999999999884 67779999999999999999987532 22579999999877 3344689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++.+ .+...+++++.+. |||.+++..
T Consensus 105 ~~~~~------~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 105 FIGGT------KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp EECSC------SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred EECCc------ccHHHHHHHHhhC--CCCEEEEEe
Confidence 99988 2244899999988 999998765
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=131.60 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=87.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..+ ++.+ .+|+++|+|+ |++.|++++... +...+++++.+|+.+++++ ++||+|
T Consensus 157 ~~~~~VLDiGcGtG~la~~l-a~~~~~~V~gvD~s~-~l~~A~~~~~~~-----gl~~~v~~~~~d~~~~~~~-~~fD~I 228 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFA-AQAGARKIYAVEAST-MAQHAEVLVKSN-----NLTDRIVVIPGKVEEVSLP-EQVDII 228 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHH-HHTTCSEEEEEECHH-HHHHHHHHHHHT-----TCTTTEEEEESCTTTCCCS-SCEEEE
T ss_pred cCCCEEEEecCcccHHHHHH-HHcCCCEEEEEEcHH-HHHHHHHHHHHc-----CCCCcEEEEECchhhCccC-CCeEEE
Confidence 45679999999999999977 4553 5899999998 999999887532 1235799999999987654 589999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++..++|+.+++....+.++++.|+|||.++.
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998898877777888899999999999874
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=120.07 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=80.9
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CC--CCCc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TP--ETGR 230 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~~ 230 (272)
++.+|||||||+|..+..++ +. ..+|+++|+|+.|++.|++++... ....+++++++|+.++ +. ..++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----g~~~~v~~~~~d~~~~l~~~~~~~~ 136 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMA-RELPADGQLLTLEADAHHAQVARENLQLA-----GVDQRVTLREGPALQSLESLGECPA 136 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHH-TTSCTTCEEEEEECCHHHHHHHHHHHHHT-----TCTTTEEEEESCHHHHHHTCCSCCC
T ss_pred CCCEEEEecCCchHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEcCHHHHHHhcCCCCC
Confidence 46799999999999999884 65 458999999999999999998543 1235799999998663 21 1248
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
||+|++.... .....+|+++.+.|+|||.+++.+
T Consensus 137 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 137 FDLIFIDADK-----PNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp CSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred eEEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEeC
Confidence 9999986542 345589999999999999888754
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=117.71 Aligned_cols=102 Identities=17% Similarity=0.097 Sum_probs=80.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-----C
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-----T 228 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~ 228 (272)
++.+|||+|||+|..+..++ +. ..+|+++|+++.+++.|++++... ....+++++++|+.+..+. .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~ 131 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLA-RGLSSGGRVVTLEASEKHADIARSNIERA-----NLNDRVEVRTGLALDSLQQIENEKY 131 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHH-TTCCSSCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred CCCEEEEecCCccHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEcCHHHHHHHHHhcCC
Confidence 46799999999999999884 65 458999999999999999988543 1234699999998654211 1
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++||+|++.... .....+|+++.+.|+|||.+++.+
T Consensus 132 ~~fD~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 132 EPFDFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp CCCSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEES
T ss_pred CCcCEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeC
Confidence 579999987663 335589999999999999887654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=118.87 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=80.9
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CC---
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ET--- 228 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~--- 228 (272)
++.+|||+|||+|..+..++ +. ..+|+++|+|+.|++.|++++... ....+++++++|+.+..+ ..
T Consensus 64 ~~~~vLdiG~G~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~ 137 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMG-LALPKDGTLITCDVDEKSTALAKEYWEKA-----GLSDKIGLRLSPAKDTLAELIHAGQ 137 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHH-TTCCTTCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEESCHHHHHHHHHTTTC
T ss_pred CCCEEEEeCCcchHHHHHHH-HhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----CCCCceEEEeCCHHHHHHHhhhccC
Confidence 45699999999999999884 65 568999999999999999988543 123469999999865421 11
Q ss_pred -CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
++||+|++.... .+...+++++.+.|+|||.+++.+-
T Consensus 138 ~~~fD~v~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 138 AWQYDLIYIDADK-----ANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp TTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CCCccEEEECCCH-----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 689999976542 3455899999999999999987553
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-14 Score=121.83 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCCCeeeEeecccchHHHHHHHh-cCCcEEEEeCC-HHHHHHH---HHhccccCCCCCCCCCceEEEEeCCCCCCCC-CC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPV-SHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQDFTPE-TG 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~-~~~~v~~vD~S-~~mld~A---~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 229 (272)
.++.+|||||||+|.++..++.. ....|++||+| +.|++.| +++... ....++.|.++|+++++.. .+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~------~~~~~v~~~~~d~~~l~~~~~d 96 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK------GGLSNVVFVIAAAESLPFELKN 96 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG------TCCSSEEEECCBTTBCCGGGTT
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH------cCCCCeEEEEcCHHHhhhhccC
Confidence 35679999999999999987422 24579999999 7888877 655432 1345799999999988531 13
Q ss_pred cceeeEechhhhh----c-ChhhHHHHHHHHHHhcccCcEEEE
Q 024100 230 RYDVIWVQWCIGH----L-TDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 230 ~fDlIvs~~vl~h----l-~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.+|.|++++...+ . .+. ..+|++++++|||||.+++
T Consensus 97 ~v~~i~~~~~~~~~~~~~~~~~--~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 97 IADSISILFPWGTLLEYVIKPN--RDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp CEEEEEEESCCHHHHHHHHTTC--HHHHHHHHTTEEEEEEEEE
T ss_pred eEEEEEEeCCCcHHhhhhhcch--HHHHHHHHHhcCCCcEEEE
Confidence 5666665543221 1 122 3689999999999999987
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=121.80 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=83.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.+++.|++++... ....+++++++|+.+. +++++|
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~g~~~v~~~~~d~~~~-~~~~~f 180 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYIL-YALNGKGTLTVVERDEDNLKKAMDNLSEF-----YDIGNVRTSRSDIADF-ISDQMY 180 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHHTTSSEEEEECSCHHHHHHHHHHHHTT-----SCCTTEEEECSCTTTC-CCSCCE
T ss_pred CCCcCEEEEecCCCCHHHHHHH-HHcCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCCcEEEEECchhcc-CcCCCc
Confidence 4567799999999999999885 54 569999999999999999987431 0135799999999874 344689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+|++ |+++++ .+++++.+.|+|||.+++...
T Consensus 181 D~Vi~-----~~~~~~--~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 181 DAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp EEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEES
T ss_pred cEEEE-----cCcCHH--HHHHHHHHHcCCCCEEEEEeC
Confidence 99998 566666 899999999999999987653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-14 Score=123.30 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=81.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC---CCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~ 230 (272)
.++.+|||+|||+|..+..+ +.. ..+|+++|+|+.|++.|++++... ...+++++++|++++.+. .++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~l-a~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~l~~v~~~~~d~~~~~~~~~~~~~ 151 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPL-KIVRPELELVLVDATRKKVAFVERAIEVL------GLKGARALWGRAEVLAREAGHREA 151 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHH-HHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEECCHHHHTTSTTTTTC
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCceEEEECcHHHhhcccccCCC
Confidence 45679999999999999977 454 458999999999999999987543 234699999999887643 368
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
||+|++..+ . ++..+++.+.+.|+|||.++..
T Consensus 152 fD~I~s~a~----~--~~~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 152 YARAVARAV----A--PLCVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp EEEEEEESS----C--CHHHHHHHHGGGEEEEEEEEEE
T ss_pred ceEEEECCc----C--CHHHHHHHHHHHcCCCeEEEEE
Confidence 999999754 2 2448999999999999988764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=117.09 Aligned_cols=102 Identities=13% Similarity=-0.031 Sum_probs=78.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~ 229 (272)
+.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.+.++... ..++.++++|+.+. +..++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--------RTNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------CTTEEEECSCTTCGGGGGGGCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--------cCCeEEEEcccCChhhhcccCC
Confidence 4567899999999999999885433 26899999999988877766532 15799999999873 33456
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+||+|++... . ......++.++.+.|+|||.+++.
T Consensus 147 ~~D~V~~~~~--~--~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 147 MVDVIFADVA--Q--PDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp CEEEEEECCC--C--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEEEcCC--C--ccHHHHHHHHHHHHcCCCeEEEEE
Confidence 8999999655 1 222346789999999999998873
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-14 Score=121.94 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=62.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-----
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET----- 228 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~----- 228 (272)
.++.+|||+|||+|.++..++ +.++ +++++|+|+.|++.|++++... ..+++++++|+.+ ++++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~-~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~-~~~~~~~~~ 99 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIA-LACPGVSVTAVDLSMDALAVARRNAERF-------GAVVDWAAADGIE-WLIERAERG 99 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHH-HHCTTEEEEEEECC--------------------------CCHHHHHH-HHHHHHHTT
T ss_pred CCCCEEEEecCCHhHHHHHHH-HhCCCCeEEEEECCHHHHHHHHHHHHHh-------CCceEEEEcchHh-hhhhhhhcc
Confidence 467799999999999999885 6543 8999999999999999887432 1168888888876 3233
Q ss_pred CcceeeEechhh------hhcChhhH------------------HHHHHHHHHhcccCcE-EEE
Q 024100 229 GRYDVIWVQWCI------GHLTDDDF------------------VSFFKRAKENIARSGT-FLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl------~hl~d~~~------------------~~~l~~~~r~LkpgG~-liv 267 (272)
++||+|+++..+ +|++.... ..+++++.++|+|||. +++
T Consensus 100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 689999996443 33332211 5899999999999999 444
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=116.36 Aligned_cols=101 Identities=13% Similarity=0.197 Sum_probs=79.6
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD 232 (272)
++.+|||+|||+|..+..++ +. ..+|+++|+|+.|++.|++++... ....+++++++|+.++ +..++ ||
T Consensus 56 ~~~~vLdiG~G~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~-fD 128 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFA-RAISISSRVVMIDPDRDNVEHARRMLHDN-----GLIDRVELQVGDPLGIAAGQRD-ID 128 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHH-TTSCTTCEEEEEESCHHHHHHHHHHHHHH-----SGGGGEEEEESCHHHHHTTCCS-EE
T ss_pred CCCEEEEEcCCccHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHC-----CCCceEEEEEecHHHHhccCCC-CC
Confidence 45699999999999999884 55 459999999999999999987542 1234699999998664 33345 99
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++.... .+...+++++.++|+|||.+++.+
T Consensus 129 ~v~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 129 ILFMDCDV-----FNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEEETTT-----SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EEEEcCCh-----hhhHHHHHHHHHhcCCCeEEEEEC
Confidence 99987432 335589999999999999998743
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-13 Score=114.02 Aligned_cols=102 Identities=11% Similarity=0.008 Sum_probs=79.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 229 (272)
+.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.++++... ..+++++++|+.+.. ..++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--------cCCCEEEEccCCCcchhhcccC
Confidence 4567799999999999999885332 26899999999999999988742 258999999998732 1235
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+||+|++... + ......++.++.+.|+|||.+++.
T Consensus 143 ~~D~v~~~~~--~--~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVA--Q--PTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC--S--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC--C--HhHHHHHHHHHHHhcCCCCEEEEE
Confidence 8999997655 1 122235699999999999998764
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=117.19 Aligned_cols=102 Identities=13% Similarity=0.189 Sum_probs=82.4
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCC--CCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPE--TGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~--~~~f 231 (272)
++.+|||+|||+|..+..++ +. ..+|+++|+|+.+++.|++++... ....+++++++|+.+. +.. +++|
T Consensus 54 ~~~~vLdiG~G~G~~~~~la-~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~f 127 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMA-QALPEATIVSIERDERRYEEAHKHVKAL-----GLESRIELLFGDALQLGEKLELYPLF 127 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHH-HHCTTCEEEEECCCHHHHHHHHHHHHHT-----TCTTTEEEECSCGGGSHHHHTTSCCE
T ss_pred CCCEEEEecCCCcHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEECCHHHHHHhcccCCCc
Confidence 45699999999999999875 55 468999999999999999987542 1224699999998775 221 3689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++....+ +...+++++.+.|+|||.+++.+
T Consensus 128 D~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 128 DVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEET
T ss_pred cEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEc
Confidence 9999988753 35589999999999999998864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=121.54 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=81.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..++ +.+. +|+++|.|+.|++.|++++... ....+++|+++|+.++.+ +++||+|+
T Consensus 125 ~~~~VLDlgcG~G~~~~~la-~~~~~~V~~vD~s~~~~~~a~~n~~~n-----~~~~~v~~~~~D~~~~~~-~~~fD~Vi 197 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIA-VYGKAKVIAIEKDPYTFKFLVENIHLN-----KVEDRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHH-HHTCCEEEEECCCHHHHHHHHHHHHHT-----TCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred CCCEEEEecccCCHHHHHHH-HhCCCEEEEEECCHHHHHHHHHHHHHc-----CCCceEEEEECCHHHhcc-cCCccEEE
Confidence 56799999999999999884 6655 5999999999999999987532 123458999999999876 56999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++... +.. .++.++.++|+|||.+++.+
T Consensus 198 ~~~p~----~~~--~~l~~~~~~LkpgG~l~~~~ 225 (278)
T 2frn_A 198 MGYVV----RTH--EFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp ECCCS----SGG--GGHHHHHHHEEEEEEEEEEE
T ss_pred ECCch----hHH--HHHHHHHHHCCCCeEEEEEE
Confidence 96542 233 79999999999999998754
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=118.47 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=83.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.+++.|++++.... ...++++.++|+.+.++++++|
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-----g~~~v~~~~~d~~~~~~~~~~~ 167 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLA-RAVGEKGLVESYEARPHHLAQAERNVRAFW-----QVENVRFHLGKLEEAELEEAAY 167 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHHCTTSEEEEEESCHHHHHHHHHHHHHHC-----CCCCEEEEESCGGGCCCCTTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHH-HHhCCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCCCEEEEECchhhcCCCCCCc
Confidence 4567799999999999999885 54 5699999999999999999874310 1357999999998875555789
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+|++ +++++. .+++++.+.|+|||.+++...
T Consensus 168 D~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 168 DGVAL-----DLMEPW--KVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp EEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEES
T ss_pred CEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeC
Confidence 99998 345555 899999999999999987653
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=118.58 Aligned_cols=107 Identities=12% Similarity=0.172 Sum_probs=79.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCC--CCCceEEEEeCCCC-CC--CCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPD--MHKATNFFCVPLQD-FT--PET 228 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~--~~~~v~~~~~d~~~-~~--~~~ 228 (272)
.++.+|||||||+|.++..++ +.++ .|++||+|+.|++.|++++...+..... ...++.++++|+.+ ++ ++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la-~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLS-PAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHH-HHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHH-HhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 456799999999999999884 6553 6999999999999998876432100000 23579999999987 33 445
Q ss_pred CcceeeEechhhhhcChhhH-----------HHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDF-----------VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~-----------~~~l~~~~r~LkpgG~liv~ 268 (272)
+++|.|++.+ +++.. ..+++++.++|+|||.+++.
T Consensus 127 ~~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TCEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 7899998543 34321 37999999999999998874
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=118.69 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++ +. ..+|+++|+|+.+++.|++++... ....+++++++|+.+.. ++++|
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~-~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~-~~~~~ 163 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLA-NIVGPEGRVVSYEIREDFAKLAWENIKWA-----GFDDRVTIKLKDIYEGI-EEENV 163 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHHCTTSEEEEECSCHHHHHHHHHHHHHH-----TCTTTEEEECSCGGGCC-CCCSE
T ss_pred CCCCCEEEEecCCchHHHHHHH-HHhCCCeEEEEEecCHHHHHHHHHHHHHc-----CCCCceEEEECchhhcc-CCCCc
Confidence 4567899999999999999885 54 569999999999999999987542 12234999999998653 44689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|+++ ++++. .+++++.+.|+|||.+++..
T Consensus 164 D~v~~~-----~~~~~--~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 164 DHVILD-----LPQPE--RVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp EEEEEC-----SSCGG--GGHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEC-----CCCHH--HHHHHHHHHcCCCCEEEEEE
Confidence 999983 44555 89999999999999998764
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=117.61 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=80.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC-------cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN-------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~-------~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-- 225 (272)
+.++.+|||+|||+|.++..+ ++.+. +|+++|+|+.+++.|++++...... .....+++++++|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~l-a~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~ 155 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCM-AIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE-LLKIDNFKIIHKNIYQVNEE 155 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHH-HHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG-GGSSTTEEEEECCGGGCCHH
T ss_pred CCCCCEEEEECCCCCHHHHHH-HHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcc-ccccCCEEEEECChHhcccc
Confidence 346679999999999999977 46543 9999999999999999987532100 000357999999987754
Q ss_pred --CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 --~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..++||+|++..+++|+ ++++.+.|+|||.+++.
T Consensus 156 ~~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~ 192 (227)
T 2pbf_A 156 EKKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIP 192 (227)
T ss_dssp HHHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEE
T ss_pred cCccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEE
Confidence 344689999999998765 36778999999998764
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=121.55 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=81.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++.+.+|+++|+|+.+++.|++++... ... ++++++|+.+. +++++||+|+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~l-a~~g~~v~gvDi~~~~v~~a~~n~~~~------~~~-v~~~~~d~~~~-~~~~~fD~Vv 189 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAA-EKLGGKALGVDIDPMVLPQAEANAKRN------GVR-PRFLEGSLEAA-LPFGPFDLLV 189 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHHT------TCC-CEEEESCHHHH-GGGCCEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHH-HHhCCeEEEEECCHHHHHHHHHHHHHc------CCc-EEEEECChhhc-CcCCCCCEEE
Confidence 35679999999999999977 577779999999999999999987431 122 88999988663 2346899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++...++ +..++.++.+.|+|||.++++.
T Consensus 190 ~n~~~~~-----~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 190 ANLYAEL-----HAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp EECCHHH-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcHHH-----HHHHHHHHHHHcCCCCEEEEEe
Confidence 9877654 4589999999999999998764
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=123.65 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=80.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~f 231 (272)
.++.+|||||||+|.++..++ +. ..+|++||+|+.|++.|++++..... ....++++++.+|+.++.. .+++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~-~~~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~~~~f 170 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVL-RHGTVEHCDLVDIDGEVMEQSKQHFPQISR--SLADPRATVRVGDGLAFVRQTPDNTY 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHH-TCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred CCCCeEEEEcCCCCHHHHHHH-hCCCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHHhccCCce
Confidence 356799999999999999885 55 45899999999999999998732100 0124679999999877643 25689
Q ss_pred eeeEechhhhhcChhhH--HHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDF--VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~--~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++....++.+...+ .+++++++++|+|||.+++.
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 209 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ 209 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99999876655433333 48999999999999998874
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=122.82 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=74.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE--EeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~fD 232 (272)
+.++.+|||+|||+|.++..+ ++. .+|++||+|+ |+..+++.... ......++.|+ ++|+.+++ +++||
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~l-a~~-~~V~gvD~s~-m~~~a~~~~~~----~~~~~~~v~~~~~~~D~~~l~--~~~fD 142 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYA-ASR-PHVMDVRAYT-LGVGGHEVPRI----TESYGWNIVKFKSRVDIHTLP--VERTD 142 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHH-HTS-TTEEEEEEEC-CCCSSCCCCCC----CCBTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCEEEEeCcCCCHHHHHH-HHc-CcEEEEECch-hhhhhhhhhhh----hhccCCCeEEEecccCHhHCC--CCCCc
Confidence 456789999999999999977 466 8999999998 64333221100 00112278999 89998875 46899
Q ss_pred eeEechhhhhcChhh-----HHHHHHHHHHhcccCc--EEEEe
Q 024100 233 VIWVQWCIGHLTDDD-----FVSFFKRAKENIARSG--TFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~-----~~~~l~~~~r~LkpgG--~liv~ 268 (272)
+|+|..+ ++..++. ...+|..+.++|+||| .+++.
T Consensus 143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~k 184 (265)
T 2oxt_A 143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVK 184 (265)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 9999877 4443321 1248999999999999 88764
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.5e-13 Score=116.31 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=78.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-CCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD 232 (272)
..++.+|||+|||+|.++..++ +.+ .+|+++|+|+.+++.|++++... ...++++.++|+. .++ ...+||
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la-~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~-~~~~fD 160 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALIS-EIVKTDVYTIERIPELVEFAKRNLERA------GVKNVHVILGDGSKGFP-PKAPYD 160 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHH-HHHCSCEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCG-GGCCEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHH-HHhCCEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEECCcccCCC-CCCCcc
Confidence 3567799999999999999774 655 79999999999999999987532 2346899999973 222 223699
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++..+++|+.+ ++.+.|+|||.+++.
T Consensus 161 ~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~ 188 (235)
T 1jg1_A 161 VIIVTAGAPKIPE--------PLIEQLKIGGKLIIP 188 (235)
T ss_dssp EEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred EEEECCcHHHHHH--------HHHHhcCCCcEEEEE
Confidence 9999999988764 578999999998765
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-13 Score=125.05 Aligned_cols=97 Identities=18% Similarity=0.358 Sum_probs=81.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
...+|||||||+|.++..++ +.++ +++++|+ +.|++.|++ ..+++|..+|+.+ +.+ .||+|
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~~--~~D~v 255 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIH-EIFPHLKCTVFDQ-PQVVGNLTG------------NENLNFVGGDMFK-SIP--SADAV 255 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHH-HHCTTSEEEEEEC-HHHHSSCCC------------CSSEEEEECCTTT-CCC--CCSEE
T ss_pred CCCEEEEECCCcCHHHHHHH-HHCCCCeEEEecc-HHHHhhccc------------CCCcEEEeCccCC-CCC--CceEE
Confidence 45699999999999999885 6555 6788899 788866543 1359999999977 443 49999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhccc---CcEEEEecC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIAR---SGTFLLSHS 270 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~Lkp---gG~liv~E~ 270 (272)
+++++|||+++++..++|++++++|+| ||.+++.|.
T Consensus 256 ~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred EEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 999999999998888999999999999 999998774
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=117.25 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=80.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC-cEEEEeC-CHHHHHHHHHhccccCCCCCCCC----CceEEEEeCCCCCC--C-
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEP-VSHFLDAARESLAPENHMAPDMH----KATNFFCVPLQDFT--P- 226 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~-S~~mld~A~~~l~~~~~~~~~~~----~~v~~~~~d~~~~~--~- 226 (272)
.++.+|||+|||+|.++..+ ++.+. +|+++|+ |+.|++.|++++..-........ .++++...++.+.. .
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~-a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVA-FLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHH-HHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHH-HHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 35679999999999999976 56655 8999999 89999999998721000000011 36888877765531 1
Q ss_pred ---CCCcceeeEechhhhhcChhhHHHHHHHHHHhcc---c--CcEEEE
Q 024100 227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIA---R--SGTFLL 267 (272)
Q Consensus 227 ---~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lk---p--gG~liv 267 (272)
.+++||+|+++.+++|..+. ..+++.+.++|+ | ||.+++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~~~--~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQAH--DALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGGGH--HHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred hhccCCCCCEEEEeCcccChHHH--HHHHHHHHHHhcccCCCCCCEEEE
Confidence 24689999999999886544 499999999999 9 997654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-13 Score=118.15 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=81.7
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++... ...+++++++|+.+.. ++++||+|+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~------~~~~v~~~~~d~~~~~-~~~~fD~Iv 181 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL------AIKNIHILQSDWFSAL-AGQQFAMIV 181 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCSTTGGG-TTCCEEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEEcchhhhc-ccCCccEEE
Confidence 45699999999999999885333 458999999999999999987532 2237999999997743 246899999
Q ss_pred ech-------------hhhhcCh----------hhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQW-------------CIGHLTD----------DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~-------------vl~hl~d----------~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++. +++|-+. .....+++++.+.|+|||.+++.
T Consensus 182 ~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 182 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 983 4444331 23568999999999999998875
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.6e-14 Score=122.79 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=81.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC------
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------ 227 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~------ 227 (272)
++.+|||+|||+|..+..++ +. ..+|+++|+|+.|++.|++++... ....+++++++|+.++.+.
T Consensus 60 ~~~~VLDiG~G~G~~t~~la-~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----g~~~~i~~~~gda~~~l~~~~~~~~ 133 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMS-LALPDDGQVITCDINEGWTKHAHPYWREA-----KQEHKIKLRLGPALDTLHSLLNEGG 133 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHH-HTSCTTCEEEEEECCCSSCCCSHHHHHHT-----TCTTTEEEEESCHHHHHHHHHHHHC
T ss_pred CcCEEEEeeCCcCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEcCHHHHHHHHhhccC
Confidence 45699999999999999884 54 458999999999999999988643 1235899999998765322
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++||+|++.... .....+|+++.+.|+|||.+++.+
T Consensus 134 ~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 134 EHQFDFIFIDADK-----TNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp SSCEEEEEEESCG-----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCEeEEEEcCCh-----HHhHHHHHHHHHhcCCCeEEEEEC
Confidence 3689999987652 345589999999999999998754
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=122.66 Aligned_cols=113 Identities=10% Similarity=0.030 Sum_probs=78.5
Q ss_pred HHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE--Ee
Q 024100 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CV 219 (272)
Q Consensus 142 L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~--~~ 219 (272)
+..+..+. .+.++.+|||+|||+|.++..+ ++. .+|++||+|+ |+..++++... ......++.|+ ++
T Consensus 71 L~~i~~~~----~~~~g~~VLDlGcGtG~~s~~l-a~~-~~V~gVD~s~-m~~~a~~~~~~----~~~~~~~v~~~~~~~ 139 (276)
T 2wa2_A 71 LAWIDERG----GVELKGTVVDLGCGRGSWSYYA-ASQ-PNVREVKAYT-LGTSGHEKPRL----VETFGWNLITFKSKV 139 (276)
T ss_dssp HHHHHHTT----SCCCCEEEEEESCTTCHHHHHH-HTS-TTEEEEEEEC-CCCTTSCCCCC----CCCTTGGGEEEECSC
T ss_pred HHHHHHcC----CCCCCCEEEEeccCCCHHHHHH-HHc-CCEEEEECch-hhhhhhhchhh----hhhcCCCeEEEeccC
Confidence 45555432 2456789999999999999977 466 7999999998 75443322100 01112378999 88
Q ss_pred CCCCCCCCCCcceeeEechhhhhcChhh-----HHHHHHHHHHhcccCc--EEEEe
Q 024100 220 PLQDFTPETGRYDVIWVQWCIGHLTDDD-----FVSFFKRAKENIARSG--TFLLS 268 (272)
Q Consensus 220 d~~~~~~~~~~fDlIvs~~vl~hl~d~~-----~~~~l~~~~r~LkpgG--~liv~ 268 (272)
|+.+++ +++||+|+|.++ ++..++. ...+|+.+.++|+||| .+++.
T Consensus 140 D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 140 DVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 998875 468999999887 4433321 1247899999999999 87764
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-13 Score=117.45 Aligned_cols=102 Identities=6% Similarity=0.071 Sum_probs=80.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-------
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~------- 226 (272)
++.+|||+|||+|..+..++ +. ..+|+++|+|+.+++.|++++... ....+++++++|+.+..+
T Consensus 60 ~~~~VLdiG~G~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----g~~~~v~~~~~d~~~~~~~~~~~~~ 133 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFA-SALPEDGKILCCDVSEEWTNVARKYWKEN-----GLENKIFLKLGSALETLQVLIDSKS 133 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHH-HHSCTTCEEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHHHHHHHCSS
T ss_pred CcCEEEEEeCCCCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCCEEEEECCHHHHHHHHHhhcc
Confidence 46699999999999999885 54 469999999999999999987542 122459999998755311
Q ss_pred --------C-C-CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 227 --------E-T-GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 227 --------~-~-~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+ + ++||+|++.... +....+|+++.+.|+|||.+++.+
T Consensus 134 ~~~~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 134 APSWASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp CCGGGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 1 1 689999998654 335589999999999999998754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-13 Score=111.70 Aligned_cols=97 Identities=9% Similarity=0.137 Sum_probs=77.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--------
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-------- 225 (272)
.++.+|||+|||+|.++..++... ..+++++|+|+ |++. .++++.++|+.+.+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTTSHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccccchhhhhhhcc
Confidence 466799999999999999885442 36999999998 7522 36889999998865
Q ss_pred CCCCcceeeEechhhhhcChhh---------HHHHHHHHHHhcccCcEEEEec
Q 024100 226 PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~---------~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++++||+|+++.++++..+.. ...+++++.+.|+|||.+++..
T Consensus 84 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4557899999998887765541 1489999999999999998754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-13 Score=118.66 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=83.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhcccc-CCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++... . ....++++.++|+.+.++++++|
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g----~~~~~v~~~~~d~~~~~~~~~~~ 172 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG----QPPDNWRLVVSDLADSELPDGSV 172 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT----SCCTTEEEECSCGGGCCCCTTCE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC----CCCCcEEEEECchHhcCCCCCce
Confidence 4567799999999999999885333 569999999999999999987421 0 01357999999998876556789
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++ +++++. .+++++.++|+|||.+++..
T Consensus 173 D~v~~-----~~~~~~--~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 173 DRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp EEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEE
T ss_pred eEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEe
Confidence 99998 444565 89999999999999998764
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=117.45 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=79.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~ 227 (272)
+.++.+|||+|||+|.++..++.... .+|+++|+++.+++.|++++...... .....+++++++|+.+..+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-HHHHTSEEEEESCGGGCCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc-ccCCCceEEEECCcccCCCc
Confidence 34667999999999999997753233 48999999999999999987431000 00024789999998763222
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.++||+|++..+++|+. +++.+.|+|||.+++.
T Consensus 161 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~ 193 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVP 193 (227)
T ss_dssp GCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEE
T ss_pred CCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEE
Confidence 36899999999998864 5679999999998764
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=112.82 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=83.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..++ +...+|+++|+|+.+++.|++++... ....++++...|+.+..+++++||+|
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~-~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~D~v 162 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLS-EVAGEVWTFEAVEEFYKTAQKNLKKF-----NLGKNVKFFNVDFKDAEVPEGIFHAA 162 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHSSEEEEECSCHHHHHHHHHHHHHT-----TCCTTEEEECSCTTTSCCCTTCBSEE
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCEEEEEecCHHHHHHHHHHHHHc-----CCCCcEEEEEcChhhcccCCCcccEE
Confidence 4567799999999999999885 44789999999999999999987432 12257899999998865244689999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+++ .+++. .+++++.+.|+|||.+++...
T Consensus 163 ~~~-----~~~~~--~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 163 FVD-----VREPW--HYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp EEC-----SSCGG--GGHHHHHHHBCTTCEEEEEES
T ss_pred EEC-----CcCHH--HHHHHHHHHcCCCCEEEEEeC
Confidence 973 44555 799999999999999987643
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-13 Score=114.05 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=80.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|..+..++ +. . .+|+++|+|+.|++.|++++...... .....+++++++|+....+..++|
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~f 152 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFA-RMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPY 152 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHH-HHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-HHHTSSEEEEESCGGGCCGGGCCE
T ss_pred CCCCCEEEEEcCCcCHHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc-ccCCCcEEEEECCcccCcccCCCc
Confidence 3467799999999999999875 54 3 48999999999999999887431000 000247899999987654445689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|++..+++++. +++.+.|+|||.+++..
T Consensus 153 D~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 153 DAIHVGAAAPVVP--------QALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEEEECSBBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred CEEEECCchHHHH--------HHHHHhcCCCcEEEEEE
Confidence 9999998886653 57789999999988753
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-13 Score=125.91 Aligned_cols=110 Identities=15% Similarity=0.023 Sum_probs=81.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHH-------HHhccccCCCCCCCCCceEEEEeCCC-CC-
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAA-------RESLAPENHMAPDMHKATNFFCVPLQ-DF- 224 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A-------~~~l~~~~~~~~~~~~~v~~~~~d~~-~~- 224 (272)
+.++.+|||+|||+|.++..++.... ..|++||.|+.+++.| ++++.... ....+++++++|.. ..
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G----l~~~nV~~i~gD~~~~~~ 315 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG----MRLNNVEFSLKKSFVDNN 315 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT----BCCCCEEEEESSCSTTCH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC----CCCCceEEEEcCcccccc
Confidence 45678999999999999998843333 4799999999999999 66653210 00258899987543 21
Q ss_pred CC--CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 225 TP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 225 ~~--~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
++ ..++||+|+++.++ +. ++...+|+++.+.|+|||.+++.+.+
T Consensus 316 ~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 316 RVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp HHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred ccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 11 13589999998776 32 45558999999999999999998765
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=119.11 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=83.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++.+|||+|||+|.++..+ ++.++ +|+++|.|+.|++.|++++... ...++.++++|+.++ +..++||
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~l-a~~~~~~~V~~vD~s~~av~~a~~n~~~n------~l~~~~~~~~d~~~~-~~~~~~D 188 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPL-AKYSKPKLVYAIEKNPTAYHYLCENIKLN------KLNNVIPILADNRDV-ELKDVAD 188 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHH-HHHTCCSEEEEEECCHHHHHHHHHHHHHT------TCSSEEEEESCGGGC-CCTTCEE
T ss_pred cCCCCEEEEecCcCCHHHHHH-HHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCEEEEECChHHc-CccCCce
Confidence 346679999999999999988 46654 9999999999999999987532 234788999999888 3356899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|++.... +.. .++.++.+.|+|||.++++.+
T Consensus 189 ~Vi~d~p~----~~~--~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 189 RVIMGYVH----KTH--KFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp EEEECCCS----SGG--GGHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCcc----cHH--HHHHHHHHHcCCCCEEEEEEc
Confidence 99998664 233 799999999999999987653
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-13 Score=117.25 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=80.7
Q ss_pred CCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-------
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~------- 226 (272)
++.+|||||||+|..+..++ +. ..+|+++|+|+.|++.|++++... ....+++++++|+.++.+
T Consensus 79 ~~~~VLeiG~G~G~~~~~la-~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----g~~~~i~~~~gda~~~l~~l~~~~~ 152 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATA-LAIPEDGKILAMDINKENYELGLPVIKKA-----GVDHKIDFREGPALPVLDEMIKDEK 152 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHH-HHSCTTCEEEEEESCCHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHHHHHHHSGG
T ss_pred CcCEEEEeCCCcCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCCeEEEECCHHHHHHHHHhccC
Confidence 45699999999999999885 54 468999999999999999988543 123579999999866421
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+++||+|++.... .....+++++.+.|+|||.+++.+
T Consensus 153 ~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 153 NHGSYDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp GTTCBSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CCCCEEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEec
Confidence 14689999987542 335589999999999999987643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-13 Score=117.63 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=76.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc------CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE 227 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~------~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~ 227 (272)
++.+|||||||+|..+..|+ +. ..+|++||+|+.|++.|+. + ..+++++++|+.++ +..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la-~~~~~~~~~~~V~gvD~s~~~l~~a~~-~----------~~~v~~~~gD~~~~~~l~~~ 148 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFR-DLTKIMGIDCQVIGIDRDLSRCQIPAS-D----------MENITLHQGDCSDLTTFEHL 148 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHH-HHHHHTTCCCEEEEEESCCTTCCCCGG-G----------CTTEEEEECCSSCSGGGGGG
T ss_pred CCCEEEEEeCCCCHHHHHHH-HhhhhcCCCCEEEEEeCChHHHHHHhc-c----------CCceEEEECcchhHHHHHhh
Confidence 35699999999999999774 54 5689999999999988862 1 25799999999885 332
Q ss_pred C-CcceeeEechhhhhcChhhHHHHHHHHHH-hcccCcEEEEec
Q 024100 228 T-GRYDVIWVQWCIGHLTDDDFVSFFKRAKE-NIARSGTFLLSH 269 (272)
Q Consensus 228 ~-~~fDlIvs~~vl~hl~d~~~~~~l~~~~r-~LkpgG~liv~E 269 (272)
. .+||+|++... |. +...+|.++.+ .|+|||.+++.+
T Consensus 149 ~~~~fD~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 149 REMAHPLIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SSSCSSEEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred ccCCCCEEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 2 37999998765 42 44589999997 999999998854
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.6e-13 Score=121.00 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=79.9
Q ss_pred CCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcceee
Q 024100 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fDlI 234 (272)
+.+|||||||+|.++..++... ..+|++||+++.|++.|++++... ...+++++.+|..++. ..+++||+|
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~------~~~rv~v~~~Da~~~l~~~~~~~fDvI 163 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP------RAPRVKIRVDDARMVAESFTPASRDVI 163 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC------CTTTEEEEESCHHHHHHTCCTTCEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc------CCCceEEEECcHHHHHhhccCCCCCEE
Confidence 3499999999999999886423 348999999999999999998531 3468999999987652 234689999
Q ss_pred EechhhhhcChhhH--HHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDF--VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~--~~~l~~~~r~LkpgG~liv~ 268 (272)
++....+.-....+ .+|+++|+++|+|||.+++.
T Consensus 164 i~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~ 199 (317)
T 3gjy_A 164 IRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVAN 199 (317)
T ss_dssp EECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 98644322111111 47999999999999998764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=110.26 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..++ +.+ .+|+++|+|+.|++.|++++. +++++++|+.+++ ++||+|
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~-~~~~~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~---~~~D~v 114 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSY-LLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTW 114 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHH-HTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHH-HcCCCEEEEEECCHHHHHHHHHhcC-----------CCEEEECcHHHCC---CCeeEE
Confidence 356799999999999999874 554 469999999999999999861 6899999998864 589999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+++..++|+.+.....+++++.+.+ |+.++
T Consensus 115 ~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~ 144 (200)
T 1ne2_A 115 IMNPPFGSVVKHSDRAFIDKAFETS--MWIYS 144 (200)
T ss_dssp EECCCC-------CHHHHHHHHHHE--EEEEE
T ss_pred EECCCchhccCchhHHHHHHHHHhc--CcEEE
Confidence 9999999987644457899999998 55443
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=112.93 Aligned_cols=102 Identities=10% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC----CCCC-
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET- 228 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~----~~~~- 228 (272)
++.+|||+|||+|..+..++ +.. .+|+++|+|+.+++.|++++... ....+++++++|+.+. +..+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----g~~~~i~~~~~d~~~~l~~l~~~~~ 145 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMA-LQLPPDGQIIACDQDPNATAIAKKYWQKA-----GVAEKISLRLGPALATLEQLTQGKP 145 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHH-TTSCTTCEEEEEESCHHHHHHHHHHHHHH-----TCGGGEEEEESCHHHHHHHHHTSSS
T ss_pred CCCEEEEecCCCCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEcCHHHHHHHHHhcCC
Confidence 45699999999999999885 553 48999999999999999987542 1234799999997542 1122
Q ss_pred -CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++||+|++.... .+...+++++.+.|+|||.+++.+
T Consensus 146 ~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 146 LPEFDLIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp CCCEEEEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred CCCcCEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 689999987552 345689999999999999998754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=113.28 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=80.7
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-------C
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------E 227 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-------~ 227 (272)
++.+|||||||+|..+..++... ..+++++|+|+.+++.|++++... +...+++++++|+.++.+ +
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----g~~~~i~~~~gda~~~l~~l~~~~~~ 144 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA-----GVEHKINFIESDAMLALDNLLQGQES 144 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEcCHHHHHHHHHhccCC
Confidence 45699999999999999885332 469999999999999999988643 123479999999865421 1
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.++||+|++.... .....+++++.+.|+|||.+++.+
T Consensus 145 ~~~fD~I~~d~~~-----~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 145 EGSYDFGFVDADK-----PNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcCEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEec
Confidence 4689999986432 345689999999999999987643
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8e-13 Score=118.93 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=82.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 232 (272)
.++.+|||+|||+|.++..++ +. ..+|+++|+++.|++.|++++..... .-..++++++.+|+.++. ..+++||
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~-~~~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~l~~~~~~fD 153 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELC-KYKSVENIDICEIDETVIEVSKIYFKNISC--GYEDKRVNVFIEDASKFLENVTNTYD 153 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCTTTSG--GGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCCCeEEEEeCCcCHHHHHHH-HcCCCCEEEEEECCHHHHHHHHHHhHHhcc--ccCCCcEEEEECChHHHHHhCCCCce
Confidence 356799999999999999885 55 36899999999999999998753200 001468999999987642 1246899
Q ss_pred eeEechhhhhcChhhH--HHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDF--VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~--~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++....++.+...+ .+++++++++|+|||.+++.
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9998654333223333 58999999999999999865
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=112.79 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=80.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CC-C-
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE-T- 228 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~-~- 228 (272)
.++.+|||+|||+|..+..++ +. ..+|+++|+|+.+++.|++++... ....+++++++|+.+.. .. .
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----g~~~~i~~~~~d~~~~~~~~~~~~ 141 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALA-LALPADGRVVTCEVDAQPPELGRPLWRQA-----EAEHKIDLRLKPALETLDELLAAG 141 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHH-TTSCTTCEEEEEESCSHHHHHHHHHHHHT-----TCTTTEEEEESCHHHHHHHHHHTT
T ss_pred cCCCEEEEEcCCccHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHC-----CCCCeEEEEEcCHHHHHHHHHhcC
Confidence 356699999999999999885 54 458999999999999999987542 12357999999885541 11 1
Q ss_pred --CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 229 --GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 229 --~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++||+|++... ......+++++.+.|+|||.+++.+
T Consensus 142 ~~~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 142 EAGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp CTTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 58999998654 2345589999999999999998754
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=120.59 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=81.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 231 (272)
..+.+|||||||+|.++..++ +. ..+|++||+|+.|++.|++++..... .-...+++++++|+.++. ..+++|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la-~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~--gl~~~rv~~~~~D~~~~l~~~~~~~f 195 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVA-RHASIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKNAAEGSY 195 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCCEEEEECCCccHHHHHHH-HcCCCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEECCHHHHHHhccCCCc
Confidence 356799999999999999884 65 35899999999999999998742100 001357999999987642 234689
Q ss_pred eeeEechh--hhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWC--IGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~v--l~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++... +++..+.....++++++++|+|||.+++.
T Consensus 196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99998654 22211111358999999999999999875
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=116.76 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=79.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
.+.+|||||||+|.++..++.. ..+|+++|+++.|++.|++++..... ....++++++.+|..++. ++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~--~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHH--HHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 4579999999999999988644 57899999999999999987642100 002357999999988775 68999998
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
. .+++. .+++++++.|+|||.+++.
T Consensus 146 d-----~~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 146 L-----QEPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp S-----SCCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred C-----CCChH--HHHHHHHHhcCCCcEEEEE
Confidence 6 34565 6999999999999999874
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=109.11 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=72.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-------
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------- 225 (272)
.+..+|||+|||+|.++..++... ..+|+++|+|+.. ...++.+.++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------------~~~~v~~~~~d~~~~~~~~~~~~ 83 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------------PIPNVYFIQGEIGKDNMNNIKNI 83 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------------CCTTCEEEECCTTTTSSCCC---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------------CCCCceEEEccccchhhhhhccc
Confidence 456799999999999999885333 2589999999821 1246889999998765
Q ss_pred ------------------CCCCcceeeEechhhhhcC----hhh-----HHHHHHHHHHhcccCcEEEEe
Q 024100 226 ------------------PETGRYDVIWVQWCIGHLT----DDD-----FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ------------------~~~~~fDlIvs~~vl~hl~----d~~-----~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++++||+|++..++++.. +.. ...+++++.++|+|||.+++.
T Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 153 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK 153 (201)
T ss_dssp --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 3446899999988776532 211 124899999999999998864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=114.48 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=82.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++... ....+++++++|+.+. +++++||
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~-~~~~~~D 183 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-----GLIERVTIKVRDISEG-FDEKDVD 183 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-----TCGGGEEEECCCGGGC-CSCCSEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-----CCCCCEEEEECCHHHc-ccCCccC
Confidence 4567799999999999999885442 468999999999999999987532 1125799999998876 3446899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|+++ .+++. .+++++.+.|+|||.+++...
T Consensus 184 ~V~~~-----~~~~~--~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 184 ALFLD-----VPDPW--NYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp EEEEC-----CSCGG--GTHHHHHHHEEEEEEEEEEES
T ss_pred EEEEC-----CcCHH--HHHHHHHHHcCCCCEEEEEeC
Confidence 99983 44555 899999999999999987653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-13 Score=120.41 Aligned_cols=110 Identities=13% Similarity=0.198 Sum_probs=81.9
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fDl 233 (272)
.+.+|||||||+|.++..++ +. ..+|++||+|+.|++.|++++..... ..-..++++++.+|+.++ +..+++||+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~-~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVL-KHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHT-TSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCeEEEEcCCcCHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHHhHhhcc-ccccCCceEEEEchHHHHHHhcCCCccE
Confidence 45799999999999999885 55 45899999999999999998742100 000146899999998764 223468999
Q ss_pred eEechhhhh---cChhh--HHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGH---LTDDD--FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~h---l~d~~--~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++....++ -+... ..+++++++++|+|||.+++.
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 999866533 11111 258999999999999998865
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=120.69 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=81.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||||||+|.++. ++++.+ .+|++||.|+ |++.|++.+.. ++...+|+++.+++++++++ ++||+||
T Consensus 83 ~~k~VLDvG~GtGiLs~-~Aa~aGA~~V~ave~s~-~~~~a~~~~~~-----n~~~~~i~~i~~~~~~~~lp-e~~Dviv 154 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSI-FCAQAGARRVYAVEASA-IWQQAREVVRF-----NGLEDRVHVLPGPVETVELP-EQVDAIV 154 (376)
T ss_dssp TTCEEEEETCTTSHHHH-HHHHTTCSEEEEEECST-THHHHHHHHHH-----TTCTTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred CCCEEEEeCCCccHHHH-HHHHhCCCEEEEEeChH-HHHHHHHHHHH-----cCCCceEEEEeeeeeeecCC-ccccEEE
Confidence 46699999999999998 546776 4799999996 89999987643 23456799999999999876 5899999
Q ss_pred echhhhhcChh-hHHHHHHHHHHhcccCcEEE
Q 024100 236 VQWCIGHLTDD-DFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 236 s~~vl~hl~d~-~~~~~l~~~~r~LkpgG~li 266 (272)
|.+.-..+..+ .+..++....+.|+|||.+|
T Consensus 155 sE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 155 SEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp CCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred eecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 96654444333 45688888999999999886
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-13 Score=118.73 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=79.1
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCC-------CCCceEEEEeCCCCCCCCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPD-------MHKATNFFCVPLQDFTPET 228 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~-------~~~~v~~~~~d~~~~~~~~ 228 (272)
.+.+|||+|||+|.++..++ +. ..+|++||+++.|++.|++++ ... ..- ..++++++++|..++...+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~-~~~~~~v~~vDid~~~i~~ar~~~-~~~--~~l~~~~~~~~~~~v~~~~~D~~~~l~~~ 150 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVL-QHDVDEVIMVEIDEDVIMVSKDLI-KID--NGLLEAMLNGKHEKAKLTIGDGFEFIKNN 150 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHT-TSCCSEEEEEESCHHHHHHHHHHT-CTT--TTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCeEEEEcCCcCHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHH-hhc--cccccccccCCCCcEEEEECchHHHhccc
Confidence 45799999999999999885 55 458999999999999999987 320 000 2467999999976542114
Q ss_pred CcceeeEechhhhhcChhhH--HHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDF--VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~--~~~l~~~~r~LkpgG~liv~ 268 (272)
++||+|++....+.-+...+ .++++++++.|+|||.+++.
T Consensus 151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 68999998765321111222 57999999999999998764
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-13 Score=125.71 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=76.1
Q ss_pred CCCeeeEeecc------cchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-
Q 024100 157 QHLVALDCGSG------IGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE- 227 (272)
Q Consensus 157 ~~~~VLDiGcG------tG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~- 227 (272)
++.+||||||| +|..+..++.+. ..+|++||+|+.|. . ...+++|+++|+.++++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---------~~~rI~fv~GDa~dlpf~~ 280 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---------DELRIRTIQGDQNDAEFLD 280 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---------CBTTEEEEECCTTCHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---------cCCCcEEEEecccccchhh
Confidence 56799999999 777788786554 35899999999982 1 135899999999987655
Q ss_pred -----CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 228 -----~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+++||+|++..+ ||. .+...+|++++++|||||.+++.|
T Consensus 281 ~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 281 RIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp HHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEe
Confidence 579999998754 554 445599999999999999998865
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.6e-12 Score=109.96 Aligned_cols=101 Identities=13% Similarity=0.007 Sum_probs=73.6
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---CC
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~~ 227 (272)
++.++.+|||+|||+|.++..++ +. ...|+++|.|+.|++...+.... ..++.++++|+.... ..
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la-~~v~~~G~V~avD~s~~~l~~l~~~a~~--------r~nv~~i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVS-DIIELNGKAYGVEFSPRVVRELLLVAQR--------RPNIFPLLADARFPQSYKSV 143 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHH-HHHTTTSEEEEEECCHHHHHHHHHHHHH--------CTTEEEEECCTTCGGGTTTT
T ss_pred CCCCCCEEEEEeecCCHHHHHHH-HHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCeEEEEcccccchhhhcc
Confidence 36778899999999999999774 54 23899999999987554433211 247999999987542 12
Q ss_pred CCcceeeEechhhhhcChhhHHH-HHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVS-FFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~-~l~~~~r~LkpgG~liv~ 268 (272)
.++||+|++..+. ++... ++..+.+.|+|||.++++
T Consensus 144 ~~~~D~I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 144 VENVDVLYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp CCCEEEEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccceEEEEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 3589999998653 22224 455666799999999875
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=118.83 Aligned_cols=107 Identities=17% Similarity=0.071 Sum_probs=84.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
..++.+|||+|||+|.++..++ ..+ ..++++|+|+.|++.|++++... ...+++|.++|+.+++++.+.|
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a-~~~~~~~~v~g~Di~~~~i~~a~~n~~~~------g~~~i~~~~~D~~~~~~~~~~~ 273 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAA-STLGPTSPVYAGDLDEKRLGLAREAALAS------GLSWIRFLRADARHLPRFFPEV 273 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHH-HHHCTTSCEEEEESCHHHHHHHHHHHHHT------TCTTCEEEECCGGGGGGTCCCC
T ss_pred CCCCCEEEeCCCCcCHHHHHHH-HhhCCCceEEEEECCHHHHHHHHHHHHHc------CCCceEEEeCChhhCccccCCC
Confidence 4567799999999999999884 544 79999999999999999998643 2237999999999987666679
Q ss_pred eeeEechhhhhcCh------hhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTD------DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d------~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+++-.++.-.. .....+++++.+.|+|||.+++.
T Consensus 274 D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~ 316 (354)
T 3tma_A 274 DRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL 316 (354)
T ss_dssp SEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred CEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999754432111 11358999999999999988764
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=116.73 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=81.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+|||+|..+..++... ...|+++|+|+.|++.+++++... ...++.++++|+.+++..+++||
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~------g~~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL------GVLNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------TCCSEEEESSCGGGGGGGCCCEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh------CCCeEEEEECChhhcccccccCC
Confidence 3567799999999999999885332 258999999999999999988543 23478999999988764456899
Q ss_pred eeEec------hhhhhcCh-------hh-------HHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQ------WCIGHLTD-------DD-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~------~vl~hl~d-------~~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++. .++++.++ .+ ...+|+++.+.|+|||.++.+
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s 245 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99974 22333221 11 148999999999999998864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=116.89 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=81.2
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fDl 233 (272)
.+.+|||+|||+|.++..++ +. ..+|++||+++.|++.|++++..... ....++++++.+|..++ ...+++||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~-~~~~~~~v~~vEid~~~v~~ar~~~~~~~~--~~~~~rv~v~~~D~~~~l~~~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREIL-KHPSVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAKSENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHT-TCTTCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHH-hCCCCceEEEEECCHHHHHHHHHHhHhhcc--ccCCCceEEEECcHHHHHhhCCCCeeE
Confidence 46799999999999999885 55 35999999999999999998743100 01246899999998764 222468999
Q ss_pred eEechhhhhcChhh--HHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDD--FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++....++.+... ..+++++++++|+|||.+++.
T Consensus 152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99965432222111 137999999999999999875
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=118.94 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=79.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD 232 (272)
..+.+|||||||+|.++..++ +.. .+|++||+|+.|++.|++++..... .-..++++++.+|..++ +..+++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~-~~~~~~~v~~vDid~~~i~~ar~~~~~~~~--~~~~~rv~v~~~Da~~~l~~~~~~fD 170 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVV-KHPSVESVVQCEIDEDVIQVSKKFLPGMAI--GYSSSKLTLHVGDGFEFMKQNQDAFD 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CCCCEEEEECCCchHHHHHHH-HcCCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHhhCCCCce
Confidence 356799999999999999885 554 6899999999999999998742100 00146799999998664 22346899
Q ss_pred eeEechhhhhcChhh--HHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDD--FVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++....+.-+... ..+++++++++|+|||.+++..
T Consensus 171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 999865542211111 2379999999999999988653
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-13 Score=117.51 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=65.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE-eCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||||.++..++ +.+ .+|+++|+|+.|++.|+++...... ....++.+.. .++....+...+||++
T Consensus 37 ~g~~VLDiGcGtG~~t~~la-~~g~~~V~gvDis~~ml~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~D~v 112 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVML-QNGAKLVYALDVGTNQLAWKIRSDERVVV---MEQFNFRNAVLADFEQGRPSFTSIDVS 112 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHH-HTTCSEEEEECSSCCCCCHHHHTCTTEEE---ECSCCGGGCCGGGCCSCCCSEEEECCS
T ss_pred CCCEEEEEccCCCHHHHHHH-hcCCCEEEEEcCCHHHHHHHHHhCccccc---cccceEEEeCHhHcCcCCCCEEEEEEE
Confidence 45699999999999999885 555 5999999999999998875432100 0011233333 3332211222356666
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++. ..+|++++++|+|||.+++.
T Consensus 113 ~~~l----------~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 113 FISL----------DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp SSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred hhhH----------HHHHHHHHHhccCCCEEEEE
Confidence 5542 37999999999999988764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-13 Score=117.01 Aligned_cols=106 Identities=13% Similarity=0.021 Sum_probs=71.8
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCC---CC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE---TG 229 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~---~~ 229 (272)
++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++... ....+++++++|+.+. +++ ++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-----NLSDLIKVVKVPQKTLLMDALKEESEI 139 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc-----CCCccEEEEEcchhhhhhhhhhcccCC
Confidence 46699999999999999885433 469999999999999999987542 1223599999997652 222 25
Q ss_pred cceeeEechhhhhcC-h------------hhHHHHHHHHHHhcccCcEEEE
Q 024100 230 RYDVIWVQWCIGHLT-D------------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~-d------------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+||+|+++-.+++.. + .....++.+++++|+|||.+.+
T Consensus 140 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 140 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp CBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred cccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 899999986554432 0 0112466777888888886543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.1e-13 Score=119.51 Aligned_cols=96 Identities=10% Similarity=0.027 Sum_probs=69.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE-EEEeCCCCCC---CCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT---PETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~-~~~~d~~~~~---~~~~~fD 232 (272)
++.+|||+|||||.+|..++.....+|++||+|+.|++.+.++- .++. +...++..++ ++..+||
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~-----------~rv~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD-----------DRVRSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC-----------TTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------cccceecccCceecchhhCCCCCCC
Confidence 45699999999999999775333459999999999999865432 1111 1122322222 1223599
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++..+++++ ..+|.++.++|+|||.+++.
T Consensus 154 ~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 154 FASIDVSFISL-----NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp EEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred EEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEE
Confidence 99999888764 37999999999999998765
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-12 Score=116.04 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=78.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-C--CcEEEEeCCHHHHHHHHHhccccC----CC-CCCCCCceEEEEeCCCCC--
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-F--NEVDLLEPVSHFLDAARESLAPEN----HM-APDMHKATNFFCVPLQDF-- 224 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~--~~v~~vD~S~~mld~A~~~l~~~~----~~-~~~~~~~v~~~~~d~~~~-- 224 (272)
+.++.+|||+|||+|.++..++ +. + .+|+++|+++.+++.|++++.... .. ......+++++++|+.+.
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la-~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLS-KAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCEEEEeCCCcCHHHHHHH-HHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 4567799999999999999885 54 3 689999999999999999875310 00 000125799999999876
Q ss_pred CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 225 ~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++++++||+|+++.. ++. .++.++.+.|+|||.+++..
T Consensus 182 ~~~~~~fD~V~~~~~-----~~~--~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 182 DIKSLTFDAVALDML-----NPH--VTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp ------EEEEEECSS-----STT--TTHHHHGGGEEEEEEEEEEE
T ss_pred ccCCCCeeEEEECCC-----CHH--HHHHHHHHhcCCCcEEEEEe
Confidence 334468999998543 344 58999999999999998654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-12 Score=117.78 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=80.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDl 233 (272)
.+.+|||+|||+|.++..++ +. ..+|+++|+|+.|++.|++++..... .-..++++++++|+.++. ..+++||+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~-~~~~~~~v~~vDis~~~l~~ar~~~~~~~~--~~~~~~v~~~~~D~~~~l~~~~~~fDv 192 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELC-KYKSVENIDICEIDETVIEVSKIYFKNISC--GYEDKRVNVFIEDASKFLENVTNTYDV 192 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCTTTSG--GGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCEEEEEcCCccHHHHHHH-HcCCCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEEccHHHHHhhcCCCceE
Confidence 45799999999999999885 55 46899999999999999998753100 001457999999986642 12468999
Q ss_pred eEechhhhhcC-hhhH--HHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLT-DDDF--VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~-d~~~--~~~l~~~~r~LkpgG~liv~ 268 (272)
|++...- ++. ...+ .++++++++.|+|||.+++.
T Consensus 193 Ii~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 193 IIVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EEEECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9986531 221 1222 58999999999999998874
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=118.62 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=78.0
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fDl 233 (272)
.+.+|||||||+|.++..++ +. ..+|+++|+|+.|++.|++++..... .-..++++++.+|+.++ +..+++||+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~-~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~--~~~~~rv~~~~~D~~~~l~~~~~~fD~ 184 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVL-KHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFDV 184 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHT-TCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHH-HcCCCCEEEEEECCHHHHHHHHHHHHHhcc--ccCCCCEEEEEChHHHHHHhcCCCceE
Confidence 45799999999999999885 55 46899999999999999998853200 00146799999998664 223468999
Q ss_pred eEechhhhhcC-hhhH--HHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLT-DDDF--VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~-d~~~--~~~l~~~~r~LkpgG~liv~ 268 (272)
|++...- ++. ...+ .+++++++++|+|||.+++.
T Consensus 185 Ii~d~~~-~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~ 221 (314)
T 2b2c_A 185 IITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQ 221 (314)
T ss_dssp EEECCC--------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCC-CCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence 9986543 332 2222 58999999999999999875
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.4e-12 Score=112.71 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=77.6
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc---e
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY---D 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f---D 232 (272)
++.+|||+|||+|.++..++ +. ..+|+++|+|+.+++.|++++... ....+++|+++|+.+.. + ++| |
T Consensus 123 ~~~~vLDlG~GsG~~~~~la-~~~~~~v~~vDis~~al~~A~~n~~~~-----~l~~~v~~~~~D~~~~~-~-~~f~~~D 194 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERH-----GVSDRFFVRKGEFLEPF-K-EKFASIE 194 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHT-----TCTTSEEEEESSTTGGG-G-GGTTTCC
T ss_pred CCCEEEEEeCchhHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCceEEEECcchhhc-c-cccCCCC
Confidence 44689999999999999885 55 568999999999999999987542 12235999999998742 2 479 9
Q ss_pred eeEech------------hhhhcChh------hHHHHHHHHH-HhcccCcEEEE
Q 024100 233 VIWVQW------------CIGHLTDD------DFVSFFKRAK-ENIARSGTFLL 267 (272)
Q Consensus 233 lIvs~~------------vl~hl~d~------~~~~~l~~~~-r~LkpgG~liv 267 (272)
+|+++- +. |-+.. +-..+++++. +.|+|||.+++
T Consensus 195 ~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 195 MILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp EEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred EEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 999972 22 22111 1127899999 99999999876
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-12 Score=118.10 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=79.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCC-ceEEEEeCCCCCCCC----CCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTPE----TGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~-~v~~~~~d~~~~~~~----~~~f 231 (272)
++.+|||+|||+|.++..++ +.+.+|++||.|+.|++.|++++.... ... +++++++|+.++... .++|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la-~~ga~V~~VD~s~~al~~a~~n~~~~g-----l~~~~v~~i~~D~~~~l~~~~~~~~~f 226 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAA-AAGAEVTHVDASKKAIGWAKENQVLAG-----LEQAPIRWICEDAMKFIQREERRGSTY 226 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHT-----CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred CCCcEEEcccccCHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHHcC-----CCccceEEEECcHHHHHHHHHhcCCCc
Confidence 45699999999999999884 666699999999999999999875321 112 489999998775421 3589
Q ss_pred eeeEechh----------hhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWC----------IGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~v----------l~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+++-. +++ ..+...+++++.++|+|||.+++.
T Consensus 227 D~Ii~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~ 271 (332)
T 2igt_A 227 DIILTDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVL 271 (332)
T ss_dssp SEEEECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred eEEEECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEE
Confidence 99998532 112 234568999999999999987654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=103.99 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||+|||+|.++..++ +.+ ..|+++|+|+.|++.|++++... ..+++++++|+.+++ ++||+|
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~-~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~---~~~D~v 116 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGAL-LLGAKEVICVEVDKEAVDVLIENLGEF-------KGKFKVFIGDVSEFN---SRVDIV 116 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHTGGG-------TTSEEEEESCGGGCC---CCCSEE
T ss_pred CCcCEEEEeeCCCCHHHHHHH-HcCCCEEEEEECCHHHHHHHHHHHHHc-------CCCEEEEECchHHcC---CCCCEE
Confidence 356799999999999999874 554 47999999999999999987532 127899999998873 489999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++..+++........+++++.+.+ ||.++.
T Consensus 117 ~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 117 IMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp EECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred EEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 9999887765444457899999888 665543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-12 Score=114.97 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=78.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fDl 233 (272)
.+.+|||+|||+|.++..++ +. ..+|++||+|+.+++.|++++..... .-..++++++++|+.++ +..+++||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~-~~~~~~~v~~vDid~~~~~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~l~~~~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVL-KHDSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHT-TSTTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHHhHhhcc--ccCCCceEEEECcHHHHHhhCCCCceE
Confidence 45799999999999999885 55 46899999999999999998742100 00136899999997654 223468999
Q ss_pred eEechhhhhcCh-h--hHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTD-D--DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d-~--~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++...-+.+.. . ...++++++++.|+|||.+++.
T Consensus 167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 998643211211 1 1248999999999999998875
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-12 Score=115.81 Aligned_cols=102 Identities=8% Similarity=0.016 Sum_probs=72.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeC----CHHHHHHHHHhccccCCCCCCCCCceEEEEe-CCCCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~----S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~ 229 (272)
+.++.+|||+|||+|.++..+ ++. ..|++||. ++.+++.++ . .....+++.|+++ |+..++ ++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~l-a~~-~~V~gvD~~~~~~~~~~~~~~--~------~~~~~~~v~~~~~~D~~~l~--~~ 147 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYC-GGL-KNVREVKGLTKGGPGHEEPIP--M------STYGWNLVRLQSGVDVFFIP--PE 147 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHH-HTS-TTEEEEEEECCCSTTSCCCCC--C------CSTTGGGEEEECSCCTTTSC--CC
T ss_pred CCCCCEEEEEcCCCCHHHHHH-Hhc-CCEEEEeccccCchhHHHHHH--h------hhcCCCCeEEEeccccccCC--cC
Confidence 356679999999999999977 466 68999998 565542111 1 0112357899998 887764 35
Q ss_pred cceeeEechhhh---hcChhh-HHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIG---HLTDDD-FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~---hl~d~~-~~~~l~~~~r~LkpgG~liv~ 268 (272)
+||+|+|.++++ +..+.. ...+|..+.++|+|||.|++.
T Consensus 148 ~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 148 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 899999987652 222222 225899999999999988764
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=111.65 Aligned_cols=103 Identities=11% Similarity=0.100 Sum_probs=76.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..++ +.+.+|+++|+|+.|++.+++++... ....+++++++|+.+++++ +||+|
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~-~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~v~~~~~D~~~~~~~--~fD~v 97 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDPRLVAELHKRVQGT-----PVASKLQVLVGDVLKTDLP--FFDTC 97 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHH-HHSSEEEEEESCHHHHHHHHHHHTTS-----TTGGGEEEEESCTTTSCCC--CCSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHH-hhCCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEcceecccch--hhcEE
Confidence 4567799999999999999884 66789999999999999999987431 1125899999999887654 79999
Q ss_pred EechhhhhcChhhHHHHH--------------HHH--HHhcccCcEEE
Q 024100 235 WVQWCIGHLTDDDFVSFF--------------KRA--KENIARSGTFL 266 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l--------------~~~--~r~LkpgG~li 266 (272)
+++..+ |++.+.+..++ +++ +++|+|||.++
T Consensus 98 v~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 98 VANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp EEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred EEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 997554 33333333333 233 36899999653
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=114.84 Aligned_cols=97 Identities=8% Similarity=0.030 Sum_probs=78.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CCC-CCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTP-ETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~~fD 232 (272)
++.+|||+| |+|.++..+ +..+ .+|+++|+|+.|++.|++++... ...+++++++|+.+ ++. .+++||
T Consensus 172 ~~~~VLDlG-G~G~~~~~l-a~~~~~~~v~~vDi~~~~l~~a~~~~~~~------g~~~v~~~~~D~~~~l~~~~~~~fD 243 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIAL-MLSGLPKRIAVLDIDERLTKFIEKAANEI------GYEDIEIFTFDLRKPLPDYALHKFD 243 (373)
T ss_dssp TTCEEEEES-CTTCHHHHH-HHHTCCSEEEEECSCHHHHHHHHHHHHHH------TCCCEEEECCCTTSCCCTTTSSCBS
T ss_pred CCCEEEEEC-CCCHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCEEEEEChhhhhchhhccCCcc
Confidence 467999999 999999987 4654 48999999999999999997542 12279999999988 543 235899
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGT 264 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~ 264 (272)
+|+++..+++. ....+++++.+.|+|||.
T Consensus 244 ~Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~ 272 (373)
T 2qm3_A 244 TFITDPPETLE---AIRAFVGRGIATLKGPRC 272 (373)
T ss_dssp EEEECCCSSHH---HHHHHHHHHHHTBCSTTC
T ss_pred EEEECCCCchH---HHHHHHHHHHHHcccCCe
Confidence 99998766443 246899999999999993
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=108.86 Aligned_cols=103 Identities=10% Similarity=-0.071 Sum_probs=86.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|-++..+. ....+.++|+|+.|++.+++++.. ...+.++..+|+..-+++ ++||+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~-------~g~~~~~~v~D~~~~~~~-~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFARE-------KDWDFTFALQDVLCAPPA-EAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHH-------TTCEEEEEECCTTTSCCC-CBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHh-------cCCCceEEEeecccCCCC-CCcchHH
Confidence 457799999999999999763 556999999999999999999753 246789999999877765 5999999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.-++||+.+.+....+ ++.+.|+++|.+|-.+
T Consensus 174 llk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 174 IFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp EESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 99999999776555666 8888999999998765
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-12 Score=111.42 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=80.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~ 228 (272)
..++.+|||+|||+|..+..++... . ..|+++|+|+.+++.+++++... ...+++++++|+.+++. ..
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~------g~~~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM------GVLNTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCHHHHHHHHHHTT
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh------CCCcEEEEeCChHhcchhhhhcc
Confidence 3466799999999999999885332 2 68999999999999999987543 23479999999877653 24
Q ss_pred CcceeeEec------hhhh--------hcCh--hhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQ------WCIG--------HLTD--DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~------~vl~--------hl~d--~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++||+|++. .+++ ++.. .....+++++.+.|+|||.++.+
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s 210 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS 210 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 689999976 2221 1110 22358999999999999998764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-12 Score=105.54 Aligned_cols=98 Identities=20% Similarity=0.216 Sum_probs=70.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC----------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE-EeCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF----------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQD 223 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~----------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~-~~d~~~ 223 (272)
+.++.+|||+|||+|.++..++.... .+|+++|+|+.+ ...++.++ .+|+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------------~~~~~~~~~~~d~~~ 82 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------------PLEGATFLCPADVTD 82 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------------CCTTCEEECSCCTTS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------------cCCCCeEEEeccCCC
Confidence 34677999999999999998853333 579999999831 12357888 888765
Q ss_pred CC--------CCCCcceeeEechhh----hhcChhh-----HHHHHHHHHHhcccCcEEEEec
Q 024100 224 FT--------PETGRYDVIWVQWCI----GHLTDDD-----FVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 224 ~~--------~~~~~fDlIvs~~vl----~hl~d~~-----~~~~l~~~~r~LkpgG~liv~E 269 (272)
.+ +++++||+|++..++ +|..+.. ...+++++.++|+|||.+++..
T Consensus 83 ~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 83 PRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 43 223589999986543 3322321 1478999999999999998763
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=107.73 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=80.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+++.+|||||||+|.++..+ ++.++ +|+++|+++.+++.|++++... +...++++.++|..+...+.++||+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~l-a~~~~~~~V~AvDi~~~al~~A~~N~~~~-----gl~~~I~~~~gD~l~~~~~~~~~D~ 93 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFL-LQMGYCDFAIAGEVVNGPYQSALKNVSEH-----GLTSKIDVRLANGLSAFEEADNIDT 93 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHH-HHTTCEEEEEEEESSHHHHHHHHHHHHHT-----TCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred CCCCEEEEECCchHHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEECchhhccccccccCE
Confidence 45679999999999999977 56654 7999999999999999998643 2235799999998765443337999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++..... +-...++....+.|+++|.+|++
T Consensus 94 IviaGmGg----~lI~~IL~~~~~~l~~~~~lIlq 124 (230)
T 3lec_A 94 ITICGMGG----RLIADILNNDIDKLQHVKTLVLQ 124 (230)
T ss_dssp EEEEEECH----HHHHHHHHHTGGGGTTCCEEEEE
T ss_pred EEEeCCch----HHHHHHHHHHHHHhCcCCEEEEE
Confidence 98766542 23557888888899999988875
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-11 Score=113.56 Aligned_cols=108 Identities=10% Similarity=0.046 Sum_probs=82.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 230 (272)
..++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++... ...++.++++|+.+++ +++++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~------g~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM------GIKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCTTCCSSSSCSSC
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEEEcChhhcchhhccCC
Confidence 35667999999999999998854322 58999999999999999987543 2347999999998875 33368
Q ss_pred ceeeEe------chhhhhcChh-------hH-------HHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWV------QWCIGHLTDD-------DF-------VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs------~~vl~hl~d~-------~~-------~~~l~~~~r~LkpgG~liv~ 268 (272)
||+|++ ..++++.++. ++ ..+|+++.+.|+|||.++.+
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~ 388 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYT 388 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999995 3345443332 11 47899999999999998864
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=107.97 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=80.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+++.+|||||||+|.++..+ ++.++ .|+++|+++.+++.|++++... +...++++.++|..+...+..+||+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~l-a~~~~~~~V~avDi~~~al~~A~~N~~~~-----gl~~~I~v~~gD~l~~~~~~~~~D~ 93 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFA-VKNQTASFAIAGEVVDGPFQSAQKQVRSS-----GLTEQIDVRKGNGLAVIEKKDAIDT 93 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHH-HHTTSEEEEEEEESSHHHHHHHHHHHHHT-----TCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred CCCCEEEEECCccHHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCceEEEEecchhhccCccccccE
Confidence 45679999999999999977 56654 7999999999999999998542 2234699999998765433235999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++..... .-...++.+..+.|+++|.+|++
T Consensus 94 IviagmGg----~lI~~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 94 IVIAGMGG----TLIRTILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp EEEEEECH----HHHHHHHHHTGGGGTTCCEEEEE
T ss_pred EEEeCCch----HHHHHHHHHHHHHhCCCCEEEEE
Confidence 99765432 23557888889999999988875
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=106.61 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=79.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-CCCCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD 232 (272)
+++.+|||||||+|.++..+ ++.++ +|+++|+++.+++.|++++... +...++++.++|.. .+++. .+||
T Consensus 14 ~~g~~VlDIGtGsG~l~i~l-a~~~~~~~V~avDi~~~al~~A~~N~~~~-----gl~~~i~~~~~d~l~~l~~~-~~~D 86 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIEL-VERGQIKSAIAGEVVEGPYQSAVKNVEAH-----GLKEKIQVRLANGLAAFEET-DQVS 86 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHH-HHTTSEEEEEEEESSHHHHHHHHHHHHHT-----TCTTTEEEEECSGGGGCCGG-GCCC
T ss_pred CCCCEEEEeCCCcHHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCceEEEEECchhhhcccC-cCCC
Confidence 45679999999999999977 56654 7999999999999999998643 22347999999985 44432 2699
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++...-. .-...++..+.+.|+|+|.+|++
T Consensus 87 ~IviaG~Gg----~~i~~Il~~~~~~L~~~~~lVlq 118 (225)
T 3kr9_A 87 VITIAGMGG----RLIARILEEGLGKLANVERLILQ 118 (225)
T ss_dssp EEEEEEECH----HHHHHHHHHTGGGCTTCCEEEEE
T ss_pred EEEEcCCCh----HHHHHHHHHHHHHhCCCCEEEEE
Confidence 999765532 22558999999999999998875
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=109.08 Aligned_cols=104 Identities=9% Similarity=-0.021 Sum_probs=86.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
..+.+|||+|||+|-++..++ .. ..++.++|+++.|++.+++++... ....++...|+..-+++ ++||+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~-~~~p~a~y~a~DId~~~le~a~~~l~~~-------g~~~~~~v~D~~~~~p~-~~~Dv 201 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWM-GLPAETVYIASDIDARLVGFVDEALTRL-------NVPHRTNVADLLEDRLD-EPADV 201 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTT-TCCTTCEEEEEESBHHHHHHHHHHHHHT-------TCCEEEEECCTTTSCCC-SCCSE
T ss_pred CCCceeeeeccCccHHHHHHH-hhCCCCEEEEEeCCHHHHHHHHHHHHhc-------CCCceEEEeeecccCCC-CCcch
Confidence 457799999999999999774 44 348999999999999999998542 34578899998766544 68999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++.-++||+.+......| ++.+.|+|+|.+|..+
T Consensus 202 aL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 202 TLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp EEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred HHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence 9999999999887666777 8999999999998654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=112.76 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=80.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++..+ +..+. +|+++|+|+.|++.|++++... +...+++|.++|+.++++++++||+
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~-a~~~~~~~v~g~Dis~~~l~~A~~n~~~~-----gl~~~i~~~~~D~~~~~~~~~~fD~ 289 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIEL-ALRRYSGEIIGIEKYRKHLIGAEMNALAA-----GVLDKIKFIQGDATQLSQYVDSVDF 289 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHH-HHTTCCSCEEEEESCHHHHHHHHHHHHHT-----TCGGGCEEEECCGGGGGGTCSCEEE
T ss_pred CCCCEEEEccCcCcHHHHHH-HHhCCCCeEEEEeCCHHHHHHHHHHHHHc-----CCCCceEEEECChhhCCcccCCcCE
Confidence 35679999999999999988 57666 9999999999999999998543 1235899999999998766679999
Q ss_pred eEechhhhhcC-----hhh-HHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLT-----DDD-FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~-----d~~-~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+++-.++.-. -.+ ...++++++++| +|+.+++.
T Consensus 290 Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~ 329 (373)
T 3tm4_A 290 AISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT 329 (373)
T ss_dssp EEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE
T ss_pred EEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 99976543321 112 357889999999 44444443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-11 Score=101.00 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=70.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC-------
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------- 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~------- 227 (272)
+.++.+|||+|||+|.++..+ ++....|++||+++.. ...+++++++|+.+.+..
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~l-a~~~~~V~gvD~~~~~-----------------~~~~v~~~~~D~~~~~~~~~~~~~~ 84 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVL-NSLARKIISIDLQEME-----------------EIAGVRFIRCDIFKETIFDDIDRAL 84 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHH-TTTCSEEEEEESSCCC-----------------CCTTCEEEECCTTSSSHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHH-HHcCCcEEEEeccccc-----------------cCCCeEEEEccccCHHHHHHHHHHh
Confidence 346789999999999999977 5668899999998631 124789999999876421
Q ss_pred ----CCcceeeEechh--------hhhcCh-hhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 ----TGRYDVIWVQWC--------IGHLTD-DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ----~~~fDlIvs~~v--------l~hl~d-~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.++||+|++... ..|... .....+++.+.++|+|||.+++.
T Consensus 85 ~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k 138 (191)
T 3dou_A 85 REEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK 138 (191)
T ss_dssp HHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 038999998542 222111 12347899999999999999864
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-11 Score=114.95 Aligned_cols=107 Identities=9% Similarity=0.082 Sum_probs=80.0
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCC-ceEEEEeCCCCCCC----CCCc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTP----ETGR 230 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~-~v~~~~~d~~~~~~----~~~~ 230 (272)
++.+|||+|||+|.++..++ +. ..+|++||.|+.|++.|++++... .... +++|+++|+.++.. ..++
T Consensus 212 ~~~~VLDl~cGtG~~sl~la-~~ga~~V~~vD~s~~al~~A~~N~~~n-----~~~~~~v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAA-MGGAMATTSVDLAKRSRALSLAHFEAN-----HLDMANHQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHH-HTTBSEEEEEESCTTHHHHHHHHHHHT-----TCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEEeeccCHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCccceEEEECCHHHHHHHHHHhCCC
Confidence 45699999999999999885 54 458999999999999999987532 1122 79999999876421 1348
Q ss_pred ceeeEechhh-----hhcCh--hhHHHHHHHHHHhcccCcEEEEec
Q 024100 231 YDVIWVQWCI-----GHLTD--DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 231 fDlIvs~~vl-----~hl~d--~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
||+|++.-.. .++.+ ..+.++++.+.+.|+|||.+++..
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999985332 22222 335568889999999999998764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=115.87 Aligned_cols=106 Identities=17% Similarity=0.072 Sum_probs=81.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC----CCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~fD 232 (272)
++.+|||+|||+|.++..++ +...+|+++|+|+.+++.|++++... ...+++|+++|+.++.+. .++||
T Consensus 209 ~~~~VLDlg~G~G~~~~~la-~~~~~v~~vD~s~~~~~~a~~n~~~n------~~~~~~~~~~d~~~~~~~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLA-LGFREVVAVDSSAEALRRAEENARLN------GLGNVRVLEANAFDLLRRLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHH-HHEEEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHc------CCCCceEEECCHHHHHHHHHhcCCCee
Confidence 45699999999999999885 55779999999999999999987532 223589999998776321 45899
Q ss_pred eeEechhhhhcC-------hhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLT-------DDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~-------d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|++.-.....+ ......++.++.+.|+|||.+++..
T Consensus 282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 325 (382)
T 1wxx_A 282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 325 (382)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999853211111 1334589999999999999988764
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.2e-11 Score=107.94 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=73.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.+++++... ...+++++++|+.++++ .+||+|
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~L-a~~~~~v~~vDi~~~~~~~a~~~~~~~------~~~~v~~~~~D~~~~~~--~~~D~V 110 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKL-LPLAKKVITIDIDSRMISEVKKRCLYE------GYNNLEVYEGDAIKTVF--PKFDVC 110 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHH-TTTSSEEEEECSCHHHHHHHHHHHHHT------TCCCEEC----CCSSCC--CCCSEE
T ss_pred CCCcCEEEEEcCcCcHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEECchhhCCc--ccCCEE
Confidence 346679999999999999987 577889999999999999999987421 23579999999988765 379999
Q ss_pred EechhhhhcChhhHHHHH---------------HHHHHhcccCc
Q 024100 235 WVQWCIGHLTDDDFVSFF---------------KRAKENIARSG 263 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l---------------~~~~r~LkpgG 263 (272)
+++... |++.+.+..++ ....++++++|
T Consensus 111 v~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 111 TANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp EEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred EEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 997665 45555545555 33567788776
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-11 Score=113.91 Aligned_cols=106 Identities=9% Similarity=0.033 Sum_probs=80.4
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~f 231 (272)
++.+|||+|||+|.++..++ +. ..+|+++|.|+.+++.|++++... ....+++|+++|+.++.+ ..++|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la-~~g~~~v~~vD~s~~~l~~a~~n~~~n-----~~~~~v~~~~~d~~~~~~~~~~~~~~f 290 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAA-IAGADEVIGIDKSPRAIETAKENAKLN-----GVEDRMKFIVGSAFEEMEKLQKKGEKF 290 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEecCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCccceEEECCHHHHHHHHHhhCCCC
Confidence 56799999999999999884 65 459999999999999999987532 112379999999876532 14589
Q ss_pred eeeEechhhhhcC-------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLT-------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~-------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++.-.....+ ......++.++.+.|+|||.++..
T Consensus 291 D~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 334 (396)
T 2as0_A 291 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 334 (396)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999853221111 133558999999999999988765
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=112.67 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=81.0
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDl 233 (272)
++.+|||+|||+|..|..++... ...|+++|+|+.+++.+++++... ...++.++++|+.+++. .+++||+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~------g~~nv~~~~~D~~~~~~~~~~~fD~ 190 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC------GISNVALTHFDGRVFGAAVPEMFDA 190 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCCSTTHHHHSTTCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCCHHHhhhhccccCCE
Confidence 67799999999999999885433 258999999999999999998643 23478999999988753 3468999
Q ss_pred eEec------hhhhhcChh-------h-------HHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQ------WCIGHLTDD-------D-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~------~vl~hl~d~-------~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++. .++.+-++. + ..++|+++.+.|+|||.++.+
T Consensus 191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvys 245 (479)
T 2frx_A 191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS 245 (479)
T ss_dssp EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 9972 233332221 1 246899999999999998764
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-11 Score=112.81 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=81.2
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCC-CCceEEEEeCCCCCCCC----CCc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDM-HKATNFFCVPLQDFTPE----TGR 230 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~-~~~v~~~~~d~~~~~~~----~~~ 230 (272)
++.+|||+|||+|.++..++ +. ..+|+++|.|+.+++.|++++... .. ..+++|+++|+.++... .++
T Consensus 220 ~~~~VLDl~cG~G~~sl~la-~~g~~~V~~vD~s~~al~~a~~n~~~n-----gl~~~~v~~~~~D~~~~~~~~~~~~~~ 293 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSAL-MGGCSQVVSVDTSQEALDIARQNVELN-----KLDLSKAEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHT-----TCCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEeeccCCHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCccceEEEECCHHHHHHHHHhcCCC
Confidence 45699999999999999884 65 569999999999999999987531 11 22799999998776321 358
Q ss_pred ceeeEechhhhh-----cC--hhhHHHHHHHHHHhcccCcEEEEec
Q 024100 231 YDVIWVQWCIGH-----LT--DDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 231 fDlIvs~~vl~h-----l~--d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
||+|++.-.... +. ......++.++.+.|+|||.++++.
T Consensus 294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999998632211 10 1345589999999999999998754
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=109.42 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=82.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 230 (272)
..++.+|||+|||+|..+..++ +.. ..|+++|+|+.+++.+++++... ..++.++++|+.+++ +++++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la-~~~~~~~v~a~D~~~~~l~~~~~~~~~~-------g~~~~~~~~D~~~~~~~~~~~~ 315 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHIL-EVAPEAQVVAVDIDEQRLSRVYDNLKRL-------GMKATVKQGDGRYPSQWCGEQQ 315 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHH-HHCTTCEEEEEESSTTTHHHHHHHHHHT-------TCCCEEEECCTTCTHHHHTTCC
T ss_pred CCCcCeEEEECCCchHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHHHHHc-------CCCeEEEeCchhhchhhcccCC
Confidence 3467799999999999999885 544 48999999999999999987542 224789999998875 34468
Q ss_pred ceeeEe------chhhhhcChh-------h-------HHHHHHHHHHhcccCcEEEEec
Q 024100 231 YDVIWV------QWCIGHLTDD-------D-------FVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 231 fDlIvs------~~vl~hl~d~-------~-------~~~~l~~~~r~LkpgG~liv~E 269 (272)
||+|++ ..++++.++. + ...+++++.+.|+|||.++.+.
T Consensus 316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst 374 (429)
T 1sqg_A 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374 (429)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999995 2345443332 1 1478999999999999988653
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-10 Score=105.39 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=80.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcC------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 230 (272)
+..+|||+|||+|.++..++.... .+++|+|+++.+++.|+.++... ..+++++++|.....+ .++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~-------g~~~~i~~~D~l~~~~-~~~ 201 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-------RQKMTLLHQDGLANLL-VDP 201 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-------TCCCEEEESCTTSCCC-CCC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC-------CCCceEEECCCCCccc-cCC
Confidence 456999999999999997753321 57999999999999999986432 1257899999866443 368
Q ss_pred ceeeEechhhhhcChhhH----------------HHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDF----------------VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~----------------~~~l~~~~r~LkpgG~liv~ 268 (272)
||+|+++-.+++++.++. ..++.++.+.|+|||.+++.
T Consensus 202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v 255 (344)
T 2f8l_A 202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 255 (344)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence 999999988777654432 25899999999999987653
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=104.02 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=80.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..++.....+|+++|.|+.+++.+++++..- +...+++++++|..++... +.||.|+
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N-----~v~~~v~~~~~D~~~~~~~-~~~D~Vi 197 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN-----KVEDRMSAYNMDNRDFPGE-NIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT-----TCTTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEeCcHHHhccc-cCCCEEE
Confidence 467799999999999999885333468999999999999999998542 2345799999999988754 6899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++... ... .++..+.+.|+|||.+.+
T Consensus 198 ~~~p~----~~~--~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 198 MGYVV----RTH--EFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp ECCCS----SGG--GGHHHHHHHEEEEEEEEE
T ss_pred ECCCC----cHH--HHHHHHHHHcCCCCEEEE
Confidence 87431 233 688888899999998854
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-12 Score=115.04 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=76.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-Cccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDl 233 (272)
..++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|++++. ...+++++++|+.+++++. ++| .
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l-~~~~~~v~~id~~~~~~~~a~~~~~--------~~~~v~~~~~D~~~~~~~~~~~f-~ 96 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKL-AKISKQVTSIELDSHLFNLSSEKLK--------LNTRVTLIHQDILQFQFPNKQRY-K 96 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHH-HHHSSEEEESSSSCSSSSSSSCTTT--------TCSEEEECCSCCTTTTCCCSSEE-E
T ss_pred CCCCCEEEEEeCCCCHHHHHH-HHhCCeEEEEECCHHHHHHHHHHhc--------cCCceEEEECChhhcCcccCCCc-E
Confidence 346679999999999999988 4667899999999999999887653 2358999999999887653 588 6
Q ss_pred eEechh-----------hhhcChhhHHHHH----HHHHHhcccCcEEEE
Q 024100 234 IWVQWC-----------IGHLTDDDFVSFF----KRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~v-----------l~hl~d~~~~~~l----~~~~r~LkpgG~liv 267 (272)
|+++-. +.|..+.. .+| +.+.++|+|||.+++
T Consensus 97 vv~n~Py~~~~~~~~~~~~~~~~~~--~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 97 IVGNIPYHLSTQIIKKVVFESRASD--IYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp EEEECCSSSCHHHHHHHHHHCCCEE--EEEEEESSHHHHHHCGGGSHHH
T ss_pred EEEeCCccccHHHHHHHHhCCCCCe--EEEEeeHHHHHHHhCCCCchhh
Confidence 666532 23322332 445 678999999997643
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9e-11 Score=106.58 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=71.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||||||+|.+|..|+ +...+|++||.++.|++.+++++.. ..+++++++|+.++++++.+||+|
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La-~~~~~V~aVEid~~li~~a~~~~~~--------~~~v~vi~gD~l~~~~~~~~fD~I 118 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELA-KNAKKVYVIEIDKSLEPYANKLKEL--------YNNIEIIWGDALKVDLNKLDFNKV 118 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHSSEEEEEESCGGGHHHHHHHHHH--------CSSEEEEESCTTTSCGGGSCCSEE
T ss_pred CCCcCEEEEECCCchHHHHHHH-hcCCEEEEEECCHHHHHHHHHHhcc--------CCCeEEEECchhhCCcccCCccEE
Confidence 4567799999999999999885 6688999999999999999998742 358999999999987766689999
Q ss_pred EechhhhhcChhhHHHHHH
Q 024100 235 WVQWCIGHLTDDDFVSFFK 253 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~ 253 (272)
+++... |++.+-+.+++.
T Consensus 119 v~NlPy-~is~pil~~lL~ 136 (295)
T 3gru_A 119 VANLPY-QISSPITFKLIK 136 (295)
T ss_dssp EEECCG-GGHHHHHHHHHH
T ss_pred EEeCcc-cccHHHHHHHHh
Confidence 988765 444444334443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=106.64 Aligned_cols=97 Identities=8% Similarity=0.144 Sum_probs=78.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++.. + +...+|+++|.|+.+++.|++++... ....+++++++|+.++. ++||+|++
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a-~~~~~V~~vD~s~~ai~~a~~n~~~n-----~l~~~v~~~~~D~~~~~---~~fD~Vi~ 264 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-C-KNAKKIYAIDINPHAIELLKKNIKLN-----KLEHKIIPILSDVREVD---VKGNRVIM 264 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-T-TTSSEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEESCGGGCC---CCEEEEEE
T ss_pred CCCEEEEccCccCHHHHh-c-cCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEECChHHhc---CCCcEEEE
Confidence 567999999999999997 5 56779999999999999999987542 12247999999998875 68999998
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.... + .. .++..+.+.|+|||.++..+
T Consensus 265 dpP~-~---~~--~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 265 NLPK-F---AH--KFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp CCTT-T---GG--GGHHHHHHHEEEEEEEEEEE
T ss_pred CCcH-h---HH--HHHHHHHHHcCCCCEEEEEE
Confidence 7432 1 12 68999999999999887653
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-10 Score=99.40 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=59.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-Cccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDl 233 (272)
..++.+|||+|||+|.++..++ +.+.+|+++|+|+.|++.+++++.. ..+++++++|+.++++++ ..| .
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~-~~~~~v~~vD~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~~-~ 97 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELV-QRCNFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSY-K 97 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHSSEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCC-E
T ss_pred CCCCCEEEEEeCCchHHHHHHH-HcCCeEEEEECCHHHHHHHHHhhcc--------CCCeEEEEChHHhCCcccCCCe-E
Confidence 4567799999999999999885 6678999999999999999998742 257999999999887653 355 4
Q ss_pred eEech
Q 024100 234 IWVQW 238 (272)
Q Consensus 234 Ivs~~ 238 (272)
|+++.
T Consensus 98 vv~nl 102 (244)
T 1qam_A 98 IFGNI 102 (244)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 55543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.8e-11 Score=110.58 Aligned_cols=104 Identities=13% Similarity=-0.023 Sum_probs=76.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..+ ++.+..|+++|.|+.|++.|++++... ....++.++|+.++. ...+.||+|+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~-a~~ga~V~avDis~~al~~a~~n~~~n-------g~~~~~~~~D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRA-ARKGAYALAVDKDLEALGVLDQAALRL-------GLRVDIRHGEALPTLRGLEGPFHHVL 285 (393)
T ss_dssp TTCEEEEESCTTTHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHH-------TCCCEEEESCHHHHHHTCCCCEEEEE
T ss_pred CCCeEEEcccchhHHHHHH-HHcCCeEEEEECCHHHHHHHHHHHHHh-------CCCCcEEEccHHHHHHHhcCCCCEEE
Confidence 4679999999999999988 466777999999999999999987532 112357788886642 1123599999
Q ss_pred echhhhhcC-------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLT-------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~-------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.-....-+ -.+...++..+.+.|+|||.++..
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~ 325 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLS 325 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 864321110 123458999999999999999744
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=117.18 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=81.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCC-CceEEEEeCCCCC-CCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDF-TPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~fDlI 234 (272)
++.+|||+|||||.++..++.....+|++||.|+.|++.|++++... +.. .+++++++|+.++ +...++||+|
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~n-----gl~~~~v~~i~~D~~~~l~~~~~~fD~I 613 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLN-----GLTGRAHRLIQADCLAWLREANEQFDLI 613 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----TCCSTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCccceEEEecCHHHHHHhcCCCccEE
Confidence 45699999999999999885333446999999999999999997532 112 4799999998774 2234689999
Q ss_pred Eechh-----------hhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 235 WVQWC-----------IGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 235 vs~~v-----------l~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
++.-. +.+ ..+...++..+.++|+|||.++++-+
T Consensus 614 i~DPP~f~~~~~~~~~~~~--~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 614 FIDPPTFSNSKRMEDAFDV--QRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp EECCCSBC-------CCBH--HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCccccCCccchhHHHH--HHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 98542 112 13456899999999999999986543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.3e-10 Score=104.88 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=75.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~f 231 (272)
.+..+|||+|||+|.++..| ++...+|+++|+|+.|++.|++++... ...+++|+++|+.+.. ..+++|
T Consensus 285 ~~~~~VLDlgcG~G~~~~~l-a~~~~~V~gvD~s~~al~~A~~n~~~~------~~~~v~f~~~d~~~~l~~~~~~~~~f 357 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPL-ATQAASVVGVEGVPALVEKGQQNARLN------GLQNVTFYHENLEEDVTKQPWAKNGF 357 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHH-HTTSSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCTTSCCSSSGGGTTCC
T ss_pred CCCCEEEECCCCCCHHHHHH-HhhCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEECCHHHHhhhhhhhcCCC
Confidence 45679999999999999988 577889999999999999999987432 2348999999998742 234689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|+|+++-.-.-+ ..+++.+.+ ++|++.++++-
T Consensus 358 D~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 358 DKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp SEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEES
T ss_pred CEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEEC
Confidence 999986442111 134444443 68888887764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=112.01 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=79.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 231 (272)
..++.+|||+|||+|..|..+++... ..|+++|+|+.+++.+++++... ... +.++++|+.++.. .+++|
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~------G~~-v~~~~~Da~~l~~~~~~~F 171 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW------GAP-LAVTQAPPRALAEAFGTYF 171 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------CCC-CEEECSCHHHHHHHHCSCE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCe-EEEEECCHHHhhhhccccC
Confidence 34677999999999999998854432 47999999999999999998643 234 8899999877642 34689
Q ss_pred eeeEec------hhhhhcChh-------h-------HHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~------~vl~hl~d~-------~-------~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++. .++.+-++. + ..++|+++.+.|+|||.++.+
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys 228 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS 228 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999951 233332221 1 157999999999999998753
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-10 Score=102.07 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=71.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-Cccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDl 233 (272)
..++ +|||||||+|.+|..|+ +.+.+|+++|.++.|++.+++++. ..+++++++|+.++++++ ..+|.
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~-~~~~~V~avEid~~~~~~l~~~~~---------~~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALL-EAGAEVTAIEKDLRLRPVLEETLS---------GLPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHH-HTTCCEEEEESCGGGHHHHHHHTT---------TSSEEEEESCGGGSCGGGSCTTEE
T ss_pred CCCC-eEEEEeCchHHHHHHHH-HcCCEEEEEECCHHHHHHHHHhcC---------CCCEEEEECChhhCChhhccCccE
Confidence 4556 99999999999999884 777899999999999999999873 257999999999887653 26899
Q ss_pred eEechhhhhcChhhHHHHHHH
Q 024100 234 IWVQWCIGHLTDDDFVSFFKR 254 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~ 254 (272)
|+++... +++.+-+.+++..
T Consensus 114 iv~NlPy-~iss~il~~ll~~ 133 (271)
T 3fut_A 114 LVANLPY-HIATPLVTRLLKT 133 (271)
T ss_dssp EEEEECS-SCCHHHHHHHHHH
T ss_pred EEecCcc-cccHHHHHHHhcC
Confidence 9988775 6666665566654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.9e-10 Score=105.48 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=75.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++.+|||+|||+|.++..+ ++.+.+|+++|.|+.|++.|++++... ... ++|+++|+.++.+. +||+|++
T Consensus 290 ~~~~VLDlgcG~G~~sl~l-a~~~~~V~gvD~s~~ai~~A~~n~~~n------gl~-v~~~~~d~~~~~~~--~fD~Vv~ 359 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYL-AKRGFNVKGFDSNEFAIEMARRNVEIN------NVD-AEFEVASDREVSVK--GFDTVIV 359 (425)
T ss_dssp CSSEEEEETCTTTHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHH------TCC-EEEEECCTTTCCCT--TCSEEEE
T ss_pred CCCEEEEeeccchHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHHc------CCc-EEEEECChHHcCcc--CCCEEEE
Confidence 5669999999999999987 577889999999999999999987431 123 89999999987533 8999998
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.-.-..+ .+ .+++.+. .|+|+|.++++
T Consensus 360 dPPr~g~--~~--~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 360 DPPRAGL--HP--RLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp CCCTTCS--CH--HHHHHHH-HHCCSEEEEEE
T ss_pred cCCccch--HH--HHHHHHH-hcCCCcEEEEE
Confidence 6542221 11 3555554 48999999886
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-10 Score=109.27 Aligned_cols=107 Identities=12% Similarity=0.049 Sum_probs=79.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 231 (272)
..++.+|||+|||+|..|..+++.. ...|+++|+|+.+++.+++++... ...++.+.++|..++.. .+++|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~------g~~nv~v~~~Da~~l~~~~~~~F 176 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW------GVSNAIVTNHAPAELVPHFSGFF 176 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH------TCSSEEEECCCHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhhhhccccC
Confidence 3567799999999999999885443 248999999999999999998653 23578999999877641 24689
Q ss_pred eeeEech------hhhhcCh-------h-------hHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQW------CIGHLTD-------D-------DFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~------vl~hl~d-------~-------~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++.- ++.+-++ . ...++|.++.+.|+|||.++.
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY 232 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIY 232 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999632 2222111 0 112789999999999999875
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=97.36 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=68.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC----Cc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET----GR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~ 230 (272)
..++.+|||||||+|.+|..| ++.+.+|+++|.++.|++.+++++.. ..+++++++|+.+++++. ++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L-a~~~~~V~avEid~~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~~ 97 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYL-LTECDNLALVEIDRDLVAFLQKKYNQ--------QKNITIYQNDALQFDFSSVKTDKP 97 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHH-TTTSSEEEEEECCHHHHHHHHHHHTT--------CTTEEEEESCTTTCCGGGSCCSSC
T ss_pred CCCcCEEEEEcccccHHHHHH-HHhCCEEEEEECCHHHHHHHHHHHhh--------CCCcEEEEcchHhCCHHHhccCCC
Confidence 456779999999999999988 57778999999999999999998742 358999999999887532 46
Q ss_pred ceeeEechhhhhcChhhHHHHHH
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFK 253 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~ 253 (272)
|| |+++.-. +++.+-+.+++.
T Consensus 98 ~~-vv~NlPY-~is~~il~~ll~ 118 (255)
T 3tqs_A 98 LR-VVGNLPY-NISTPLLFHLFS 118 (255)
T ss_dssp EE-EEEECCH-HHHHHHHHHHHH
T ss_pred eE-EEecCCc-ccCHHHHHHHHh
Confidence 88 7777654 444444334443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.5e-10 Score=103.89 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=71.1
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--CC-------
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ET------- 228 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~~------- 228 (272)
+.+|||+|||+|.++..+ ++.+.+|+++|.|+.|++.|++++... ...+++|+++|++++.. ..
T Consensus 214 ~~~vLDl~cG~G~~~l~l-a~~~~~V~gvd~~~~ai~~a~~n~~~n------g~~~v~~~~~d~~~~~~~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLAL-ARNFDRVLATEIAKPSVAAAQYNIAAN------HIDNVQIIRMAAEEFTQAMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHH-GGGSSEEEEECCCHHHHHHHHHHHHHT------TCCSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEECCHHHHHHHHhhccccccc
Confidence 468999999999999976 678889999999999999999987532 23579999999876521 11
Q ss_pred -------CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 -------GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 -------~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+||+|++.-.- ..+..++.+.|+++|.++..
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr--------~g~~~~~~~~l~~~g~ivyv 325 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPR--------SGLDSETEKMVQAYPRILYI 325 (369)
T ss_dssp GGSCGGGCCEEEEEECCCT--------TCCCHHHHHHHTTSSEEEEE
T ss_pred cccccccCCCCEEEECcCc--------cccHHHHHHHHhCCCEEEEE
Confidence 279999864321 12344566667788877643
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=101.38 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=79.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC----------------------------------------CcEEEEeCCHHHHH
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF----------------------------------------NEVDLLEPVSHFLD 194 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~----------------------------------------~~v~~vD~S~~mld 194 (272)
..+...+||.+||+|.++.+++ ... ..|+++|.|+.|++
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa-~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~ 277 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAA-LIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIE 277 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHH-HHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHH-HHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHH
Confidence 4566789999999999998774 332 24999999999999
Q ss_pred HHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhh-hcC-hhhHHHHHHHHHHhccc--CcEEEE
Q 024100 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLT-DDDFVSFFKRAKENIAR--SGTFLL 267 (272)
Q Consensus 195 ~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~-hl~-d~~~~~~l~~~~r~Lkp--gG~liv 267 (272)
.|++++... +....++|.++|+.+++++ .+||+|+++--++ .+. ..++..+.+.+.+.|++ ||.+++
T Consensus 278 ~Ar~Na~~~-----gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 278 IAKQNAVEA-----GLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp HHHHHHHHT-----TCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred HHHHHHHHc-----CCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998643 1234699999999988765 5899999994321 222 24566788888877776 776544
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.8e-09 Score=98.45 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=80.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC----------------------------------------CcEEEEeCCHHHHH
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF----------------------------------------NEVDLLEPVSHFLD 194 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~----------------------------------------~~v~~vD~S~~mld 194 (272)
..+...+||.+||+|.+..+.+ ... ..++++|.|+.|++
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa-~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~ 270 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAA-MIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVE 270 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHH-HHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHH-HHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHH
Confidence 4566799999999999998774 332 24999999999999
Q ss_pred HHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhh-hc-ChhhHHHHHHHHHHhccc--CcEEEE
Q 024100 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HL-TDDDFVSFFKRAKENIAR--SGTFLL 267 (272)
Q Consensus 195 ~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~-hl-~d~~~~~~l~~~~r~Lkp--gG~liv 267 (272)
.|++++... +....++|.++|+.+++++ .+||+|+++--++ .+ ...++..+++.+.+.|++ ||.+++
T Consensus 271 ~Ar~Na~~~-----gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 271 IARKNAREV-----GLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp HHHHHHHHT-----TCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHc-----CCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999998643 2234699999999998765 4899999984322 23 335677888888888876 776543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-09 Score=100.46 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=71.4
Q ss_pred CCCeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+|||+|||+|.++..++.. ...+++++|+++.+++.| .+++++++|+.++.+. ++||+|
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~~~~~~-~~fD~I 102 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEPG-EAFDLI 102 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCCS-SCEEEE
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChhhcCcc-CCCCEE
Confidence 4569999999999999988533 246899999999988655 2578999999887643 589999
Q ss_pred Eechhhh----------hcChhh-----------------HHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIG----------HLTDDD-----------------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~----------hl~d~~-----------------~~~~l~~~~r~LkpgG~liv 267 (272)
+++-.+. |+.++. ...++.++.+.|+|||.+++
T Consensus 103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~ 162 (421)
T 2ih2_A 103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 162 (421)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence 9962221 122221 22679999999999998754
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-09 Score=100.59 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=79.5
Q ss_pred CCCCeeeEeecccchHHHHHHHh--------------cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR--------------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~--------------~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~ 221 (272)
.+..+|||.|||+|.++..++.. ....+.|+|.++.+++.|+.++.... ....++++.++|.
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g----~~~~~~~i~~gD~ 245 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG----IGTDRSPIVCEDS 245 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT----CCSSCCSEEECCT
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC----CCcCCCCEeeCCC
Confidence 34569999999999999877432 13589999999999999998764321 0011678999998
Q ss_pred CCCCCCCCcceeeEechhhhhcChhh---------------HHHHHHHHHHhcccCcEEEE
Q 024100 222 QDFTPETGRYDVIWVQWCIGHLTDDD---------------FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 222 ~~~~~~~~~fDlIvs~~vl~hl~d~~---------------~~~~l~~~~r~LkpgG~liv 267 (272)
...+.. .+||+|+++-.+++..+.+ -..|++++.+.|+|||.+.+
T Consensus 246 l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~ 305 (445)
T 2okc_A 246 LEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV 305 (445)
T ss_dssp TTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence 776544 4899999987766543211 13799999999999998754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.8e-09 Score=96.58 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=80.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC----------------------------------------CcEEEEeCCHHHHH
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF----------------------------------------NEVDLLEPVSHFLD 194 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~----------------------------------------~~v~~vD~S~~mld 194 (272)
..+..+|||.|||+|.++.+++ ... ..|+++|.|+.|++
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa-~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~ 271 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAA-MIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESID 271 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHH-HHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHH-HHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHH
Confidence 4567799999999999999874 332 36999999999999
Q ss_pred HHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhh-hcC-hhhHHHHHHHHHHhccc--CcEEEE
Q 024100 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLT-DDDFVSFFKRAKENIAR--SGTFLL 267 (272)
Q Consensus 195 ~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~-hl~-d~~~~~~l~~~~r~Lkp--gG~liv 267 (272)
.|++++... +...+++|.++|+.+++++ ++||+|+++-.++ .+. .+++..+++++.+.|++ ||.+++
T Consensus 272 ~Ar~Na~~~-----gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 272 IARENAEIA-----GVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp HHHHHHHHH-----TCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred HHHHHHHHc-----CCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 999997543 1234799999999998764 5899999976542 222 24566788888888876 776543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.7e-09 Score=92.96 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=65.8
Q ss_pred CCCCCeeeEeec------ccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEE-EEeCCCCC
Q 024100 155 NNQHLVALDCGS------GIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF-FCVPLQDF 224 (272)
Q Consensus 155 ~~~~~~VLDiGc------GtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~-~~~d~~~~ 224 (272)
+.++.+|||+|| |+|. . ++++. ...|+++|+|+. + .+++| +++|+.++
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~-~~a~~~~~~~~V~gvDis~~--------v-----------~~v~~~i~gD~~~~ 118 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--A-VLRQWLPTGTLLVDSDLNDF--------V-----------SDADSTLIGDCATV 118 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--H-HHHHHSCTTCEEEEEESSCC--------B-----------CSSSEEEESCGGGC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--H-HHHHHcCCCCEEEEEECCCC--------C-----------CCCEEEEECccccC
Confidence 567789999999 5576 2 22343 358999999987 2 15778 99999887
Q ss_pred CCCCCcceeeEechhhh--------hcCh-hhHHHHHHHHHHhcccCcEEEEe
Q 024100 225 TPETGRYDVIWVQWCIG--------HLTD-DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 225 ~~~~~~fDlIvs~~vl~--------hl~d-~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++. ++||+|+++...+ |... ..+..+|+++.++|+|||.|++.
T Consensus 119 ~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~ 170 (290)
T 2xyq_A 119 HTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 170 (290)
T ss_dssp CCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Ccc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 654 6899999874321 1111 22457999999999999999874
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.9e-09 Score=94.62 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=60.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCH-------HHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS-------HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE 227 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~-------~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~ 227 (272)
++.+|||+|||+|..+..+ ++.+.+|+++|.|+ .|++.|++++... ....+++++++|+.++. ++
T Consensus 83 ~~~~VLDlgcG~G~~a~~l-A~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~-----~~~~ri~~~~~d~~~~l~~~~ 156 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVL-ASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQ-----DTAARINLHFGNAAEQMPALV 156 (258)
T ss_dssp GCCCEEETTCTTCHHHHHH-HHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHH-----HHHTTEEEEESCHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHH-HHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhh-----CCccCeEEEECCHHHHHHhhh
Confidence 4568999999999999977 57788999999999 9999998775321 01134999999998752 22
Q ss_pred C--CcceeeEechhhhh
Q 024100 228 T--GRYDVIWVQWCIGH 242 (272)
Q Consensus 228 ~--~~fDlIvs~~vl~h 242 (272)
+ ++||+|++.-.++|
T Consensus 157 ~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 157 KTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHCCCSEEEECCCC--
T ss_pred ccCCCccEEEECCCCCC
Confidence 2 58999999655544
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.74 E-value=8.5e-09 Score=91.35 Aligned_cols=86 Identities=8% Similarity=0.096 Sum_probs=62.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCc--EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC----
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---- 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~--v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---- 228 (272)
..++.+|||||||+|.+|. + ++ +.+ |+++|+++.|++.+++++.. ..+++++++|+.++++++
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l-~~-~~~~~v~avEid~~~~~~a~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~ 87 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-P-VG-ERLDQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFNFGELAEK 87 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-H-HH-TTCSCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCCHHHHHHH
T ss_pred CCCcCEEEEECCCCcHHHH-h-hh-CCCCeEEEEECCHHHHHHHHHHhcc--------CCceEEEECchhhCCHHHhhcc
Confidence 3466799999999999999 6 45 567 99999999999999987632 258999999998876532
Q ss_pred -CcceeeEechhhhhcChhhHHHHH
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l 252 (272)
+..|.|+++... +++.+-+.+++
T Consensus 88 ~~~~~~vvsNlPY-~i~~~il~~ll 111 (252)
T 1qyr_A 88 MGQPLRVFGNLPY-NISTPLMFHLF 111 (252)
T ss_dssp HTSCEEEEEECCT-TTHHHHHHHHH
T ss_pred cCCceEEEECCCC-CccHHHHHHHH
Confidence 124677776553 44444333333
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-08 Score=89.56 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=60.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---C
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---G 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~ 229 (272)
..++.+|||+|||+|..|..++... ...|+++|.++.+++.+++++... ...++.++++|+.++.... +
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~------g~~~v~~~~~D~~~~~~~~~~~~ 173 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVSCCELAEEDFLAVSPSDPRYH 173 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGGSCTTCGGGT
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCChHhcCccccccC
Confidence 3467799999999999999885432 358999999999999999998653 2357999999988765422 4
Q ss_pred cceeeEe
Q 024100 230 RYDVIWV 236 (272)
Q Consensus 230 ~fDlIvs 236 (272)
+||.|++
T Consensus 174 ~fD~Vl~ 180 (309)
T 2b9e_A 174 EVHYILL 180 (309)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 7999996
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-08 Score=89.91 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=60.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCC-cce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fD 232 (272)
..++.+|||+|||+|.+|..+ ++. ..+|+++|.|+.|++.++++ . ..+++++++|+.++++++. ...
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L-~~~~~~~v~avEid~~~~~~~~~~-~---------~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVL-LQHPLKKLYVIELDREMVENLKSI-G---------DERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHH-TTSCCSEEEEECCCHHHHHHHTTS-C---------CTTEEEECSCTTTCCGGGSCSSE
T ss_pred CCCcCEEEEEcCchHHHHHHH-HHcCCCeEEEEECCHHHHHHHHhc-c---------CCCeEEEEcchhhCChhHccCCc
Confidence 456779999999999999988 466 47999999999999999875 2 2478999999998876531 122
Q ss_pred eeEechhhhhcChhh
Q 024100 233 VIWVQWCIGHLTDDD 247 (272)
Q Consensus 233 lIvs~~vl~hl~d~~ 247 (272)
.|+++... +++.+-
T Consensus 98 ~vv~NlPy-~i~~~i 111 (249)
T 3ftd_A 98 KVVGNLPY-NVASLI 111 (249)
T ss_dssp EEEEECCT-TTHHHH
T ss_pred EEEEECch-hccHHH
Confidence 55555544 554443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.6e-08 Score=86.82 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=81.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 232 (272)
+.+.+||=||.|.|.++++++ +. ..+|++||+++.+++.|++.+..... ..-..++++++.+|...+- -..++||
T Consensus 82 p~pk~VLIiGgGdG~~~revl-k~~~v~~v~~VEID~~Vv~~a~~~lp~~~~-~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVT-RHKNVESITMVEIDAGVVSFCRQYLPNHNA-GSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHH-TCTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred CCCCeEEEECCCchHHHHHHH-HcCCcceEEEEcCCHHHHHHHHhcCccccc-cccCCCcEEEEechHHHHHhhccccCC
Confidence 457799999999999999996 54 46899999999999999998743210 0123578999999998763 2346999
Q ss_pred eeEechh-----hhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWC-----IGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~v-----l~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++-.. -.++-.. +|++.|+++|+|||.++..
T Consensus 160 vIi~D~~dp~~~~~~L~t~---eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTS---AFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEEESCCCCCCTTCCSSCC---HHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeCCCcCCCchhhcCH---HHHHHHHHHhCCCCEEEEe
Confidence 9995422 1122222 6999999999999998864
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-08 Score=90.63 Aligned_cols=80 Identities=9% Similarity=0.088 Sum_probs=60.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCc----EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCC-
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNE----VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG- 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~----v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 229 (272)
..++.+|||||||+|.+|..|+ +.+.. |+++|+|+.|++.++++. ..+++++++|+.++++++-
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La-~~~~~~~~~V~avDid~~~l~~a~~~~----------~~~v~~i~~D~~~~~~~~~~ 108 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVI-ARLATPGSPLHAVELDRDLIGRLEQRF----------GELLELHAGDALTFDFGSIA 108 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHH-HHHCBTTBCEEEEECCHHHHHHHHHHH----------GGGEEEEESCGGGCCGGGGS
T ss_pred CCCcCEEEEEccccHHHHHHHH-HhCCCcCCeEEEEECCHHHHHHHHHhc----------CCCcEEEECChhcCChhHhc
Confidence 4567799999999999999885 66666 999999999999999873 2479999999988876431
Q ss_pred -----cceeeEechhhhhcChh
Q 024100 230 -----RYDVIWVQWCIGHLTDD 246 (272)
Q Consensus 230 -----~fDlIvs~~vl~hl~d~ 246 (272)
..+.|+++.-. +++.+
T Consensus 109 ~~~~~~~~~vv~NlPY-~iss~ 129 (279)
T 3uzu_A 109 RPGDEPSLRIIGNLPY-NISSP 129 (279)
T ss_dssp CSSSSCCEEEEEECCH-HHHHH
T ss_pred ccccCCceEEEEccCc-cccHH
Confidence 22356666543 44333
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=87.74 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCCeeeEeecccchHHHHHHHh-------cC-------C--cEEEEeCCHHHHHHHHHhccccCCCC------CCCCCce
Q 024100 157 QHLVALDCGSGIGRITKNLLIR-------YF-------N--EVDLLEPVSHFLDAARESLAPENHMA------PDMHKAT 214 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~-------~~-------~--~v~~vD~S~~mld~A~~~l~~~~~~~------~~~~~~v 214 (272)
.+.+|+|+|||+|..|..++.. .+ + +|...|.-...-+.-=+.+....... .......
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 4679999999999999966321 11 2 44555633333222222232211000 0000011
Q ss_pred EEEE---eCCCCCCCCCCcceeeEechhhhhcCh-h-----------------------------------hHHHHHHHH
Q 024100 215 NFFC---VPLQDFTPETGRYDVIWVQWCIGHLTD-D-----------------------------------DFVSFFKRA 255 (272)
Q Consensus 215 ~~~~---~d~~~~~~~~~~fDlIvs~~vl~hl~d-~-----------------------------------~~~~~l~~~ 255 (272)
.|.. +.+..-.+++++||+|+|+++||++.+ + |+..||+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 333333456789999999999999873 1 566789999
Q ss_pred HHhcccCcEEEEe
Q 024100 256 KENIARSGTFLLS 268 (272)
Q Consensus 256 ~r~LkpgG~liv~ 268 (272)
++.|+|||.+++.
T Consensus 212 a~eL~pGG~mvl~ 224 (374)
T 3b5i_A 212 AAEVKRGGAMFLV 224 (374)
T ss_dssp HHHEEEEEEEEEE
T ss_pred HHHhCCCCEEEEE
Confidence 9999999998753
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.8e-08 Score=88.91 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=72.1
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~ 218 (272)
.-|.++..+.+ +.+..+|||+|||+|.++..++.+. ...|.++|++..+. ... .. ......++.++.
T Consensus 61 ~KL~ei~ek~~----l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~----~~p-i~---~~~~g~~ii~~~ 128 (277)
T 3evf_A 61 AKLRWFHERGY----VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH----EKP-MN---VQSLGWNIITFK 128 (277)
T ss_dssp HHHHHHHHTTS----SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC----CCC-CC---CCBTTGGGEEEE
T ss_pred HHHHHHHHhCC----CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc----ccc-cc---cCcCCCCeEEEe
Confidence 33555555432 5677899999999999999664222 33678888774431 000 00 000122555667
Q ss_pred eCCCCCCCCCCcceeeEechhhh---hcChh-hHHHHHHHHHHhcccC-cEEEEe
Q 024100 219 VPLQDFTPETGRYDVIWVQWCIG---HLTDD-DFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 219 ~d~~~~~~~~~~fDlIvs~~vl~---hl~d~-~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
.+++...+.+++||+|+|..+.+ +..|. ....+|+.+.++|+|| |.|+++
T Consensus 129 ~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 129 DKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp CSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 76655555667899999987554 11121 1124578889999999 998863
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-08 Score=93.40 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=76.0
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCC---C------CCCCceEEEEeCCCCCCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMA---P------DMHKATNFFCVPLQDFTP 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~---~------~~~~~v~~~~~d~~~~~~ 226 (272)
++.+|||+|||+|..+..++... ..+|+++|.++.+++.+++++....... . ....+++++++|+.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 35689999999999999886442 3579999999999999999985420000 0 012348999999866532
Q ss_pred -CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 -ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 -~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..++||+|++.- .. ... .++..+.+.|+|||.++++
T Consensus 127 ~~~~~fD~I~lDP-~~---~~~--~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG---SPM--EFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HSTTCEEEEEECC-SS---CCH--HHHHHHHHHEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC---CHH--HHHHHHHHhcCCCCEEEEE
Confidence 124799999642 21 123 7899999999999988764
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-08 Score=90.49 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=60.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--C---C
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--E---T 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--~---~ 228 (272)
..++.+|||+|||+|..+..++... ..+|+++|.|+.|++.|++++... ..+++|+++|+.+++. . .
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~-------g~~v~~v~~d~~~l~~~l~~~g~ 96 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGI 96 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-------CCcEEEEECCHHHHHHHHHhcCC
Confidence 3467799999999999999886433 469999999999999999987532 2589999999987641 1 1
Q ss_pred CcceeeEec
Q 024100 229 GRYDVIWVQ 237 (272)
Q Consensus 229 ~~fDlIvs~ 237 (272)
++||.|++.
T Consensus 97 ~~~D~Vl~D 105 (301)
T 1m6y_A 97 EKVDGILMD 105 (301)
T ss_dssp SCEEEEEEE
T ss_pred CCCCEEEEc
Confidence 479999974
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.5e-08 Score=92.08 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=76.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCc-eEEEEeCCCCCCC--CCCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQDFTP--ETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~-v~~~~~d~~~~~~--~~~~f 231 (272)
++.+|||++||+|.++..++.+. + ..|+++|.++.+++.+++++..- +...+ ++++++|+.++.. ..++|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N-----gl~~~~v~v~~~Da~~~l~~~~~~~f 126 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN-----NIPEDRYEIHGMEANFFLRKEWGFGF 126 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT-----TCCGGGEEEECSCHHHHHHSCCSSCE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCceEEEEeCCHHHHHHHhhCCCC
Confidence 45699999999999999886432 3 58999999999999999998542 11233 8999999865421 13579
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++.- . .... .++..+.+.|+|||.++++
T Consensus 127 D~V~lDP-~---g~~~--~~l~~a~~~Lk~gGll~~t 157 (392)
T 3axs_A 127 DYVDLDP-F---GTPV--PFIESVALSMKRGGILSLT 157 (392)
T ss_dssp EEEEECC-S---SCCH--HHHHHHHHHEEEEEEEEEE
T ss_pred cEEEECC-C---cCHH--HHHHHHHHHhCCCCEEEEE
Confidence 9999875 1 1123 6888999999999988765
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-08 Score=90.07 Aligned_cols=83 Identities=18% Similarity=0.086 Sum_probs=60.0
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCC---CCceEEEEeCCCCCCC-CCCcceee
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM---HKATNFFCVPLQDFTP-ETGRYDVI 234 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~---~~~v~~~~~d~~~~~~-~~~~fDlI 234 (272)
.+|||+|||+|..+..+ ++.+.+|++||.++.+.+.+++++..++...... ..+++++++|..++.. ...+||+|
T Consensus 90 ~~VLDl~~G~G~dal~l-A~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVL-ASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHH-HHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 69999999999999977 4667799999999998777776654331110111 1479999999876421 12379999
Q ss_pred Eechhhhh
Q 024100 235 WVQWCIGH 242 (272)
Q Consensus 235 vs~~vl~h 242 (272)
++.-.+.+
T Consensus 169 ~lDP~y~~ 176 (258)
T 2oyr_A 169 YLDPMFPH 176 (258)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99766644
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-07 Score=92.66 Aligned_cols=103 Identities=10% Similarity=0.073 Sum_probs=73.1
Q ss_pred CCCeeeEeecccchHHH---HHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 157 QHLVALDCGSGIGRITK---NLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~---~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
....|||+|||+|-+.. ...++... +|.+||-|+ |...|++.... +.-...|+++.+|++++..+ +++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~-----N~~~dkVtVI~gd~eev~LP-EKV 429 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQF-----EEWGSQVTVVSSDMREWVAP-EKA 429 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHH-----HTTGGGEEEEESCTTTCCCS-SCE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHh-----ccCCCeEEEEeCcceeccCC-ccc
Confidence 34579999999998844 33223333 579999997 66777776532 23457899999999999876 599
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
|+|||-|.=..+-.+-....+....+.|||||.+|
T Consensus 430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 99998654222222333456666679999999875
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.6e-08 Score=87.71 Aligned_cols=182 Identities=12% Similarity=0.082 Sum_probs=89.0
Q ss_pred ceeecccCCC-CcccCCHHHHHHHHhcccccchhhhhHHHHHHHhhhhc-chhhhhccccCCCCCcchhhhhHHHHHHHH
Q 024100 68 AMEVSGLDSD-GKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEG-VEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (272)
Q Consensus 68 ~~~~~g~~~~-G~~~~~~~e~W~~~~~~~~~~~~~~~~~y~~~~~YW~~-~~~~~~~~lggy~~~s~~d~~~s~~~L~~l 145 (272)
.+.-+|+..- |-.-.++-+.||+.++.- +..+..-|.. ..-++- +....+....|-. . ..-...+..-|.++
T Consensus 9 ~~~~~~~~~g~~~~~~tlg~~wk~~ln~l---~k~~f~~y~~-~~i~e~~r~~ar~~l~~~~~-~-g~YrSRAAfKL~ei 82 (282)
T 3gcz_A 9 GLVPRGSHMGGTGSGMTPGEAWKKQLNKL---GKTQFEQYKR-SCILEVDRTHARDSLENGIQ-N-GIAVSRGSAKLRWM 82 (282)
T ss_dssp ---------------CCHHHHHHHHHHHC---CHHHHHHHHT-TTCEEECCHHHHHHHHHTCC-S-SBCSSTHHHHHHHH
T ss_pred CcccccccCCCCCCCCcHHHHHHHHHHhh---hHHHHHhhhh-hceeeccHHHHHHHHhcCCc-C-CCEecHHHHHHHHH
Confidence 3344555554 556677899999998751 0111122222 111111 0111111111111 1 11122333345566
Q ss_pred HhccCCCccCCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC
Q 024100 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (272)
Q Consensus 146 l~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~ 224 (272)
..+.+ +.+..+|||+|||+|.++..++.+. ...|+++|++..+...+... .....++.++..+.+..
T Consensus 83 ~eK~~----Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~--------~~~g~~ii~~~~~~dv~ 150 (282)
T 3gcz_A 83 EERGY----VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR--------TTLGWNLIRFKDKTDVF 150 (282)
T ss_dssp HHTTS----CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC--------CBTTGGGEEEECSCCGG
T ss_pred HHhcC----CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc--------ccCCCceEEeeCCcchh
Confidence 55432 5677899999999999999664232 23678888876542222110 00123444445444333
Q ss_pred CCCCCcceeeEechhhhhcC----hh-hHHHHHHHHHHhcccC--cEEEEe
Q 024100 225 TPETGRYDVIWVQWCIGHLT----DD-DFVSFFKRAKENIARS--GTFLLS 268 (272)
Q Consensus 225 ~~~~~~fDlIvs~~vl~hl~----d~-~~~~~l~~~~r~Lkpg--G~liv~ 268 (272)
.+.++++|+|+|..+.. -. |. ....+|.-+.++|+|| |.|+++
T Consensus 151 ~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 151 NMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp GSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 34557899999877654 21 11 1124577778999999 988764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-08 Score=93.81 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=60.7
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CC-CCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TP-ETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~-~~~~fDlI 234 (272)
++.+|||+|||+|..+..+ ++.+.+|++||.|+.|++.|++++.... ....+++++++|+.++ +. .+++||+|
T Consensus 93 ~g~~VLDLgcG~G~~al~L-A~~g~~V~~VD~s~~~l~~Ar~N~~~~~----~gl~~i~~i~~Da~~~L~~~~~~~fDvV 167 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIAL-MSKASQGIYIERNDETAVAARHNIPLLL----NEGKDVNILTGDFKEYLPLIKTFHPDYI 167 (410)
T ss_dssp TTCEEEESSCSSSHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHHS----CTTCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred CCCEEEEeCCCchHHHHHH-HhcCCEEEEEECCHHHHHHHHHhHHHhc----cCCCcEEEEECcHHHhhhhccCCCceEE
Confidence 3679999999999999976 6888899999999999999999975310 0125799999999876 21 12489999
Q ss_pred Eec
Q 024100 235 WVQ 237 (272)
Q Consensus 235 vs~ 237 (272)
++.
T Consensus 168 ~lD 170 (410)
T 3ll7_A 168 YVD 170 (410)
T ss_dssp EEC
T ss_pred EEC
Confidence 984
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=75.36 Aligned_cols=95 Identities=20% Similarity=0.113 Sum_probs=71.1
Q ss_pred CCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCC--CCceEEEEeCCCCC----------
Q 024100 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDM--HKATNFFCVPLQDF---------- 224 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~--~~~v~~~~~d~~~~---------- 224 (272)
..+|||+||| +.|.-+ ++. ..+|+.+|.++++.+.|++++... +. ..+++++.+|+.+.
T Consensus 31 a~~VLEiGtG--ySTl~l-A~~~~g~VvtvE~d~~~~~~ar~~l~~~-----g~~~~~~I~~~~gda~~~~~wg~p~~~~ 102 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVA-AELPGKHVTSVESDRAWARMMKAWLAAN-----PPAEGTEVNIVWTDIGPTGDWGHPVSDA 102 (202)
T ss_dssp CSEEEEESCS--HHHHHH-HTSTTCEEEEEESCHHHHHHHHHHHHHS-----CCCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred CCEEEEECch--HHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCCCceEEEEeCchhhhcccccccch
Confidence 4599999985 677755 565 579999999999999999998653 12 45899999996542
Q ss_pred -----C--------C-CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 225 -----T--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 225 -----~--------~-~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+ . ..++||+|++..-. ....+..+.+.|+|||.|++
T Consensus 103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp TGGGTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEE
T ss_pred hhhhHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEE
Confidence 1 1 12689999987642 12566667799999998854
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-07 Score=92.80 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=76.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-------------------------------------------CCcEEEEeCCHH
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSH 191 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-------------------------------------------~~~v~~vD~S~~ 191 (272)
..+...+||.+||+|.+..+++... ...+.|+|.++.
T Consensus 188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~ 267 (703)
T 3v97_A 188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR 267 (703)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence 3456789999999999998764221 147999999999
Q ss_pred HHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--CCcceeeEechhhh-hc-ChhhHHHHHHHHHHhc---ccCcE
Q 024100 192 FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIG-HL-TDDDFVSFFKRAKENI---ARSGT 264 (272)
Q Consensus 192 mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fDlIvs~~vl~-hl-~d~~~~~~l~~~~r~L---kpgG~ 264 (272)
|++.|+.++..+ +....++|.++|+.++..+ .++||+|+++--++ -+ ..+++..+.+.+.+.| .|||.
T Consensus 268 av~~A~~N~~~a-----gv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 268 VIQRARTNARLA-----GIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp HHHHHHHHHHHT-----TCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHc-----CCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 999999998653 2234699999999887433 23899999994332 12 2345556666555544 57997
Q ss_pred EEEe
Q 024100 265 FLLS 268 (272)
Q Consensus 265 liv~ 268 (272)
+++.
T Consensus 343 ~~il 346 (703)
T 3v97_A 343 LSLF 346 (703)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-07 Score=89.19 Aligned_cols=106 Identities=10% Similarity=-0.037 Sum_probs=76.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-------------------CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCC----
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHK---- 212 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-------------------~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~---- 212 (272)
.+..+|||.+||+|.+...++... ...+.|+|.++.++..|+.++... ...
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~------gi~~~~~ 241 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH------DIEGNLD 241 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT------TCCCBGG
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh------CCCcccc
Confidence 345699999999999988764221 137999999999999999876421 112
Q ss_pred -ceEEEEeCCCCCC-CCCCcceeeEechhhhhcCh------------hhHHHHHHHHHHhcccCcEEEE
Q 024100 213 -ATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTD------------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 213 -~v~~~~~d~~~~~-~~~~~fDlIvs~~vl~hl~d------------~~~~~~l~~~~r~LkpgG~liv 267 (272)
..++.++|....+ ...++||+|+++-.+....+ ..-..|+.++.+.|+|||++.+
T Consensus 242 ~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 242 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp GTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence 2788999876543 22358999999865544321 1123799999999999998754
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=8.5e-07 Score=83.13 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCeeeEeecccchHHHHHHHh-------------c---CC--cEEEEeCC-----------HHHHHHHHHhccccCCCCC
Q 024100 158 HLVALDCGSGIGRITKNLLIR-------------Y---FN--EVDLLEPV-----------SHFLDAARESLAPENHMAP 208 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~-------------~---~~--~v~~vD~S-----------~~mld~A~~~l~~~~~~~~ 208 (272)
..+|+|+|||+|..|..++.. . .+ +|...|.- +.+.+..++...
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g------- 125 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG------- 125 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC-------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc-------
Confidence 578999999999999977644 0 13 44556755 555555444321
Q ss_pred CCCCceEEEEeCCCCC---CCCCCcceeeEechhhhhcChh-------------------------------------hH
Q 024100 209 DMHKATNFFCVPLQDF---TPETGRYDVIWVQWCIGHLTDD-------------------------------------DF 248 (272)
Q Consensus 209 ~~~~~v~~~~~d~~~~---~~~~~~fDlIvs~~vl~hl~d~-------------------------------------~~ 248 (272)
......|+.+....| .++++++|+|+|+++||++.+. |+
T Consensus 126 -~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~ 204 (384)
T 2efj_A 126 -RKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDF 204 (384)
T ss_dssp -CCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHH
T ss_pred -CCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHH
Confidence 111235666555443 4567899999999999998652 12
Q ss_pred HHHHHHHHHhcccCcEEEEe
Q 024100 249 VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 249 ~~~l~~~~r~LkpgG~liv~ 268 (272)
..||+..++.|+|||.+++.
T Consensus 205 ~~FL~~Ra~eL~pGG~mvl~ 224 (384)
T 2efj_A 205 TTFLRIHSEELISRGRMLLT 224 (384)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEE
Confidence 23477778999999998764
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-07 Score=95.03 Aligned_cols=103 Identities=11% Similarity=0.073 Sum_probs=72.9
Q ss_pred CCeeeEeecccchHHHHHH-H-h-cC-----------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC
Q 024100 158 HLVALDCGSGIGRITKNLL-I-R-YF-----------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LL-a-~-~~-----------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~ 223 (272)
...|||+|||+|-++...+ + + .. .+|.+||-|+..+...+.+... +-...|+++.+|+++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N------g~~d~VtVI~gd~ee 483 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR------TWKRRVTIIESDMRS 483 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH------TTTTCSEEEESCGGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc------CCCCeEEEEeCchhh
Confidence 4589999999999974321 1 1 11 2899999999766555544321 234579999999999
Q ss_pred CCCC-----CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 224 FTPE-----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 224 ~~~~-----~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
+..+ +++.|+|||-+.=..+.++-..+.|..+.+.|+|||.+|
T Consensus 484 v~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 484 LPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 8762 468999998776322233434568888889999999875
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-07 Score=84.65 Aligned_cols=113 Identities=11% Similarity=0.054 Sum_probs=78.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCC--CCCCCceEEEEeCCCCCC----CCCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA--PDMHKATNFFCVPLQDFT----PETG 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~--~~~~~~v~~~~~d~~~~~----~~~~ 229 (272)
.++.+||=||.|.|...++++.....+|++||+++.+++.|++.+....... ....++++++..|...+- ...+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 3467999999999999999975445689999999999999999875321100 011245889999876542 1235
Q ss_pred cceeeEechh-------hhhcChhhH-HHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWC-------IGHLTDDDF-VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~v-------l~hl~d~~~-~~~l~~~~r~LkpgG~liv~ 268 (272)
+||+|+.-.. -.......+ .+|++.|+++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 8999996421 111112222 47999999999999998763
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-06 Score=80.47 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=74.8
Q ss_pred CCCCeeeEeecccchHHHHHHHh---------------cCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR---------------YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~---------------~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~ 218 (272)
+...+|+|+||++|..|..++.. ..+ +|...|......+..-+.+.... ......|..
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-----~~~~~~f~~ 124 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-----DVDGVCFIN 124 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-----SCTTCEEEE
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-----ccCCCEEEE
Confidence 34568999999999888855433 123 56677877777777766664321 001234555
Q ss_pred eCCCC---CCCCCCcceeeEechhhhhcCh-------------------------------hhHHHHHHHHHHhcccCcE
Q 024100 219 VPLQD---FTPETGRYDVIWVQWCIGHLTD-------------------------------DDFVSFFKRAKENIARSGT 264 (272)
Q Consensus 219 ~d~~~---~~~~~~~fDlIvs~~vl~hl~d-------------------------------~~~~~~l~~~~r~LkpgG~ 264 (272)
+.... -.++++++|+|+|+++||.+.+ .|+..||+..++.|+|||.
T Consensus 125 gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~ 204 (359)
T 1m6e_X 125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR 204 (359)
T ss_dssp EEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred ecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 44333 3456789999999999999865 1455679999999999999
Q ss_pred EEEe
Q 024100 265 FLLS 268 (272)
Q Consensus 265 liv~ 268 (272)
++..
T Consensus 205 mvl~ 208 (359)
T 1m6e_X 205 MVLT 208 (359)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.4e-06 Score=75.35 Aligned_cols=104 Identities=12% Similarity=-0.033 Sum_probs=62.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.+..+|||+||++|.++..++ +. ...|+++|+...+...... . .....++.....+...+.+.++++|
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~-~~~gv~sV~Gvdlg~~~~~~P~~-~-------~~~~~~iv~~~~~~di~~l~~~~~D 149 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAA-AQKEVMSVKGYTLGIEGHEKPIH-M-------QTLGWNIVKFKDKSNVFTMPTEPSD 149 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHH-TSTTEEEEEEECCCCTTSCCCCC-C-------CBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred CCCCCEEEEcCCCCCHHHHHHH-HhcCCceeeeEEecccccccccc-c-------cccCCceEEeecCceeeecCCCCcC
Confidence 4577899999999999999775 43 3367888876543111000 0 0012233334444433344456899
Q ss_pred eeEechhhhhcC----hh-hHHHHHHHHHHhcccC-cEEEEe
Q 024100 233 VIWVQWCIGHLT----DD-DFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~----d~-~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
+|+|..+-. -. |. ....+|.-+.++|+|| |.|+++
T Consensus 150 lVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 150 TLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp EEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 999865543 11 11 1124577778999999 998864
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-06 Score=77.09 Aligned_cols=109 Identities=13% Similarity=0.140 Sum_probs=68.4
Q ss_pred CCCeeeEeecccchHHHHHHHhc------CC-------cEEEEeCCH---HHHH-----------HHHHhccccCC----
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY------FN-------EVDLLEPVS---HFLD-----------AARESLAPENH---- 205 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~------~~-------~v~~vD~S~---~mld-----------~A~~~l~~~~~---- 205 (272)
+..+|||+|+|+|..+..++... .+ +++.+|..+ +++. .|++.+.....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 45699999999999998764321 33 678889654 5555 44544321000
Q ss_pred ----CCCCCCCceEEEEeCCCCC-CCCC----CcceeeEec-hhhhhcChhh--HHHHHHHHHHhcccCcEEEE
Q 024100 206 ----MAPDMHKATNFFCVPLQDF-TPET----GRYDVIWVQ-WCIGHLTDDD--FVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 206 ----~~~~~~~~v~~~~~d~~~~-~~~~----~~fDlIvs~-~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv 267 (272)
.-.....+++++.+|+.+. +..+ ..||+|+.- ++-.. +++ -..+|+.+.+.|+|||.++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~--~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT--CGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc--ChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 0001224788999998763 2211 279999984 33211 222 23799999999999999874
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.1e-06 Score=83.15 Aligned_cols=108 Identities=14% Similarity=0.085 Sum_probs=70.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-----CcEEEEeCCHHHHHHH--HHhccccCCCCCCCCCceEEEEeCCCCCCC-CC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAA--RESLAPENHMAPDMHKATNFFCVPLQDFTP-ET 228 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-----~~v~~vD~S~~mld~A--~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 228 (272)
++.+|||.|||+|.+...++ +.. .++.|+|+++.+++.| +.++..... ........+...|+..... ..
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA-~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L--lhGi~~~~I~~dD~L~~~~~~~ 397 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVS-AGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL--VSSNNAPTITGEDVCSLNPEDF 397 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHH-HTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT--CBTTBCCEEECCCGGGCCGGGG
T ss_pred CCCEEEECCCCccHHHHHHH-HHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh--hcCCCcceEEecchhccccccc
Confidence 46799999999999999774 544 3789999999999999 444321000 0111223555666654321 23
Q ss_pred CcceeeEechhhhh-cC-hh-------------------------hHHHHHHHHHHhcccCcEEEE
Q 024100 229 GRYDVIWVQWCIGH-LT-DD-------------------------DFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~h-l~-d~-------------------------~~~~~l~~~~r~LkpgG~liv 267 (272)
++||+|+++--+.. .. +. -...|+..+.+.|+|||.+.+
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf 463 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA 463 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence 58999998744311 00 00 123588999999999998754
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=78.93 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=74.6
Q ss_pred CCCeeeEeecccchHHHHHHHhc----CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--C-CCCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-PETG 229 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~----~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~-~~~~ 229 (272)
+..+|+|.+||+|.+...++... ...+.|+|.++.++..|+.++.... ....++.+.++|.... + ....
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g----i~~~~~~I~~gDtL~~d~p~~~~~ 296 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG----VPIENQFLHNADTLDEDWPTQEPT 296 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT----CCGGGEEEEESCTTTSCSCCSSCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC----CCcCccceEecceecccccccccc
Confidence 56699999999999988775331 3579999999999999998763321 0114678999997654 2 2346
Q ss_pred cceeeEechhhhh-------------------cC---hhhHHHHHHHHHHhcc-cCcEEE
Q 024100 230 RYDVIWVQWCIGH-------------------LT---DDDFVSFFKRAKENIA-RSGTFL 266 (272)
Q Consensus 230 ~fDlIvs~~vl~h-------------------l~---d~~~~~~l~~~~r~Lk-pgG~li 266 (272)
+||+|+++--+.. ++ +.+ -.|+..+.+.|+ |||++.
T Consensus 297 ~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 297 NFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp CBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEE
T ss_pred cccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEE
Confidence 8999998632210 10 111 258999999999 999874
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=7.9e-06 Score=76.09 Aligned_cols=72 Identities=13% Similarity=0.040 Sum_probs=57.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+||++|.+|..+ .+.+..|++||+.+ |-.... ..++|+++.+|...+.++.++||+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l-~~rg~~V~aVD~~~-l~~~l~------------~~~~V~~~~~d~~~~~~~~~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQL-VKRNMWVYSVDNGP-MAQSLM------------DTGQVTWLREDGFKFRPTRSNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHH-HHTTCEEEEECSSC-CCHHHH------------TTTCEEEECSCTTTCCCCSSCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHH-HHCCCEEEEEEhhh-cChhhc------------cCCCeEEEeCccccccCCCCCcCEE
Confidence 457889999999999999977 57788999999764 322221 2468999999999988776789999
Q ss_pred Eechhh
Q 024100 235 WVQWCI 240 (272)
Q Consensus 235 vs~~vl 240 (272)
+|-.+.
T Consensus 275 vsDm~~ 280 (375)
T 4auk_A 275 VCDMVE 280 (375)
T ss_dssp EECCSS
T ss_pred EEcCCC
Confidence 998875
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=71.46 Aligned_cols=115 Identities=12% Similarity=0.027 Sum_probs=64.1
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
.-|.++-.+.+ +.+..+|||+||++|.++... ++. ...|.+..+.... ...+... ......-+.|.
T Consensus 60 yKL~EIdeK~l----ikpg~~VVDLGaAPGGWSQvA-a~~~~vg~V~G~vig~D~-----~~~P~~~--~~~Gv~~i~~~ 127 (269)
T 2px2_A 60 AKLRWLVERRF----VQPIGKVVDLGCGRGGWSYYA-ATMKNVQEVRGYTKGGPG-----HEEPMLM--QSYGWNIVTMK 127 (269)
T ss_dssp HHHHHHHHTTS----CCCCEEEEEETCTTSHHHHHH-TTSTTEEEEEEECCCSTT-----SCCCCCC--CSTTGGGEEEE
T ss_pred HHHHHHHHcCC----CCCCCEEEEcCCCCCHHHHHH-hhhcCCCCceeEEEcccc-----ccCCCcc--cCCCceEEEee
Confidence 33555555433 678899999999999999966 454 3344555433221 0111000 00011223555
Q ss_pred Ee-CCCCCCCCCCcceeeEechhh---hhcChhh-HHHHHHHHHHhcccCc-EEEEe
Q 024100 218 CV-PLQDFTPETGRYDVIWVQWCI---GHLTDDD-FVSFFKRAKENIARSG-TFLLS 268 (272)
Q Consensus 218 ~~-d~~~~~~~~~~fDlIvs~~vl---~hl~d~~-~~~~l~~~~r~LkpgG-~liv~ 268 (272)
++ |+.++. +.++|+|+|-.+= +...|.. -..+|.-+.++|+||| .|+++
T Consensus 128 ~G~Df~~~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK 182 (269)
T 2px2_A 128 SGVDVFYKP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK 182 (269)
T ss_dssp CSCCGGGSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ccCCccCCC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 46 887653 3579999975421 1111111 1136777779999999 77653
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.1e-06 Score=80.64 Aligned_cols=105 Identities=10% Similarity=-0.100 Sum_probs=70.8
Q ss_pred CCeeeEeecccchHHHHHHHhc----------------CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC
Q 024100 158 HLVALDCGSGIGRITKNLLIRY----------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~----------------~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~ 221 (272)
..+|||.+||+|.+...++... ...+.|+|+++.++..|+.++... +...++.+.++|.
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~-----gi~~~i~i~~gDt 319 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR-----GIDFNFGKKNADS 319 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT-----TCCCBCCSSSCCT
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh-----CCCcccceeccch
Confidence 3499999999999888663211 247899999999999999876432 1122344477776
Q ss_pred CCCC-CCCCcceeeEechhhhh-------------------------cCh--hhHHHHHHHHHHhcccCcEEEE
Q 024100 222 QDFT-PETGRYDVIWVQWCIGH-------------------------LTD--DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 222 ~~~~-~~~~~fDlIvs~~vl~h-------------------------l~d--~~~~~~l~~~~r~LkpgG~liv 267 (272)
...+ ....+||+|+++-.+.. ++. ..--.|+..+.+.|+|||++.+
T Consensus 320 L~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai 393 (544)
T 3khk_A 320 FLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL 393 (544)
T ss_dssp TTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred hcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence 5443 23468999998744332 111 0112699999999999998643
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-05 Score=69.06 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=89.7
Q ss_pred CCceeecccCCCCcccCCHHHHHHHHhcccccchhhhhHHH--HHHHhhhhc-chhhhhccccCCCCCcchhhhhHHHHH
Q 024100 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWY--REGISYWEG-VEASVDGVLGGFGNVNEVDIKGSEAFL 142 (272)
Q Consensus 66 ~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~~~~~~~~~~~y--~~~~~YW~~-~~~~~~~~lggy~~~s~~d~~~s~~~L 142 (272)
++.+.-+|+..-|-.-.+.-+.||+.++. -.+.+|+ .. ..-++- +....+.+-.|-... ..-...+..-|
T Consensus 11 ~~~~~~~~~~rg~~~g~tlG~~wK~~LN~-----l~k~~F~~Yk~-~gi~Evdr~~ar~~l~~g~~~~-g~y~SR~~~KL 83 (321)
T 3lkz_A 11 SSGLVPRGSHMGGAKGRTLGEVWKERLNQ-----MTKEEFTRYRK-EAIIEVDRSAAKHARKEGNVTG-GHPVSRGTAKL 83 (321)
T ss_dssp ---------------CCSHHHHHHHHHTT-----SCHHHHHHHTT-TTCEEECCHHHHHHHHHTCCSS-CCCSSTHHHHH
T ss_pred ccCcccccCcCCCCCCCchHHHHHHHHhc-----cCHHHHHHHhh-cCceeechHHHHHHHhcCcCcC-CCccchHHHHH
Confidence 33444566666666778899999999886 2223332 21 111111 111111111111100 11122233345
Q ss_pred HHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-C
Q 024100 143 QMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-P 220 (272)
Q Consensus 143 ~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d 220 (272)
..+..+.+ +.+..+|||+||++|.++...+...+ ..|.++|.-...-+. .... .+-.-..+.|++. |
T Consensus 84 ~ei~~~~~----l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~------~ql~w~lV~~~~~~D 152 (321)
T 3lkz_A 84 RWLVERRF----LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLV------QSYGWNIVTMKSGVD 152 (321)
T ss_dssp HHHHHTTS----CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCC------CBTTGGGEEEECSCC
T ss_pred HHHHHhcC----CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchh------hhcCCcceEEEeccC
Confidence 56655432 56788999999999999996643443 368999855431100 0000 0112245888887 8
Q ss_pred CCCCCCCCCcceeeEechhhhhcChhhH-----HHHHHHHHHhcccC-cEEEE
Q 024100 221 LQDFTPETGRYDVIWVQWCIGHLTDDDF-----VSFFKRAKENIARS-GTFLL 267 (272)
Q Consensus 221 ~~~~~~~~~~fDlIvs~~vl~hl~d~~~-----~~~l~~~~r~Lkpg-G~liv 267 (272)
+..+++ .++|+|+|--. .--+++.. ..+|.-+.++|++| |-|++
T Consensus 153 v~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 153 VFYRPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp TTSSCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HhhCCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 877765 57999998655 33233222 23666667889888 76665
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.99 E-value=9.1e-06 Score=73.03 Aligned_cols=81 Identities=19% Similarity=0.090 Sum_probs=62.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-----CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~ 229 (272)
+.+++.+||++||.|..|..++.+ ...|+++|.++.+++.|++ +. . .+++++++++.+++. ..+
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~--------~-~rv~lv~~~f~~l~~~L~~~g~~ 88 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LH--------L-PGLTVVQGNFRHLKRHLAALGVE 88 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TC--------C-TTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hc--------c-CCEEEEECCcchHHHHHHHcCCC
Confidence 456779999999999999998754 6799999999999999998 73 1 589999999987631 124
Q ss_pred cceeeEe--chhhhhcChh
Q 024100 230 RYDVIWV--QWCIGHLTDD 246 (272)
Q Consensus 230 ~fDlIvs--~~vl~hl~d~ 246 (272)
++|.|++ ..+.+++.++
T Consensus 89 ~vDgIL~DLGvSS~Qld~~ 107 (285)
T 1wg8_A 89 RVDGILADLGVSSFHLDDP 107 (285)
T ss_dssp CEEEEEEECSCCHHHHHCG
T ss_pred CcCEEEeCCcccccccccc
Confidence 7999995 3344444433
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.8e-06 Score=67.43 Aligned_cols=77 Identities=9% Similarity=-0.000 Sum_probs=54.7
Q ss_pred CCCCeeeEeecccc-hHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-Cccee
Q 024100 156 NQHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG-~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDl 233 (272)
..+.+|||+|||.| +++..|..+.+.+|+++|+++..++ |++.|+.+..+.. ..||+
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------------~v~dDiF~P~~~~Y~~~DL 92 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------------IVRDDITSPRMEIYRGAAL 92 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------------EECCCSSSCCHHHHTTEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------------eEEccCCCCcccccCCcCE
Confidence 35679999999999 7999774337889999998875433 6677776643321 37999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHh
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKEN 258 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~ 258 (272)
|++... .+|+...+-++.+.
T Consensus 93 IYsirP-----P~El~~~i~~lA~~ 112 (153)
T 2k4m_A 93 IYSIRP-----PAEIHSSLMRVADA 112 (153)
T ss_dssp EEEESC-----CTTTHHHHHHHHHH
T ss_pred EEEcCC-----CHHHHHHHHHHHHH
Confidence 987665 35666666666644
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=6e-05 Score=69.95 Aligned_cols=111 Identities=11% Similarity=-0.012 Sum_probs=76.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 231 (272)
..++.+|||+.||+|.=|..++ .... .++++|.|+.-+...++++.+..........++.+.+.|...+. ...+.|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la-~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALL-QTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHH-HTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCEEEEecCCccHHHHHHH-HhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 4677899999999999999885 5544 68999999998888888775432211112357888888877653 234689
Q ss_pred eeeE----echh----hh-------hcChhh-------HHHHHHHHHHhcccCcEEE
Q 024100 232 DVIW----VQWC----IG-------HLTDDD-------FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 232 DlIv----s~~v----l~-------hl~d~~-------~~~~l~~~~r~LkpgG~li 266 (272)
|.|+ |+.. +. ..+..+ ..++|.+..+.|||||.+|
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LV 281 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVV 281 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 9999 3431 11 111111 1367888889999999876
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.76 E-value=7.5e-05 Score=67.11 Aligned_cols=105 Identities=9% Similarity=0.028 Sum_probs=73.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-------CCcEEEEeCCHH--------------------------HHHHHHHhccc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-------FNEVDLLEPVSH--------------------------FLDAARESLAP 202 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-------~~~v~~vD~S~~--------------------------mld~A~~~l~~ 202 (272)
..+++|||||+.+|..+..+ +.. ..+++++|..+. .++.+++++..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~m-a~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~ 183 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILM-RGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN 183 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHH-HHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred CCCCcEEEeecCchHHHHHH-HHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence 34679999999999999866 332 457899985421 46778888765
Q ss_pred cCCCCCCCCCceEEEEeCCCCC-C-CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 203 ENHMAPDMHKATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 203 ~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
... ...+++++.+++.+. + .+.++||+|++-.-. + .....+|..+...|+|||+|++-+
T Consensus 184 ~gl----~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-y---~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 184 YDL----LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-Y---ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TTC----CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-H---HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred cCC----CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-c---ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 311 136899999998653 2 223589999976532 2 123478999999999999887643
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00023 Score=62.36 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
..-|..+..+.+ +.+..+|||+||++|.++...+.+.+ ..|.++|.-...- +. .....+-.-..++|.
T Consensus 64 ~~KL~ei~ek~~----l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh----e~---P~~~~s~gwn~v~fk 132 (267)
T 3p8z_A 64 SAKLQWFVERNM----VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH----EE---PVPMSTYGWNIVKLM 132 (267)
T ss_dssp HHHHHHHHHTTS----SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS----CC---CCCCCCTTTTSEEEE
T ss_pred HHHHHHHHHhcC----CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc----cC---cchhhhcCcCceEEE
Confidence 334555655442 56788999999999999997754443 3689998554321 10 000011234679999
Q ss_pred Ee-CCCCCCCCCCcceeeEechhhhhcChh--hH---HHHHHHHHHhcccCcEEEE
Q 024100 218 CV-PLQDFTPETGRYDVIWVQWCIGHLTDD--DF---VSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 218 ~~-d~~~~~~~~~~fDlIvs~~vl~hl~d~--~~---~~~l~~~~r~LkpgG~liv 267 (272)
++ |+...++ .++|+|+|-..= --+++ |- ..+|.-+.++|++ |.+++
T Consensus 133 ~gvDv~~~~~--~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 133 SGKDVFYLPP--EKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CSCCGGGCCC--CCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred eccceeecCC--ccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 98 8866654 579999985431 11111 11 2356666788988 55544
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=6.7e-06 Score=92.63 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=54.8
Q ss_pred CCCeeeEeecccchHHHHHHHhc------CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG 229 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~------~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 229 (272)
+..+||+||+|+|..+..++... +.+.+.+|+|+.+.+.|++++... .+..-..|.++. .+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------di~~~~~d~~~~~~~~~~ 1310 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------HVTQGQWDPANPAPGSLG 1310 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------TEEEECCCSSCCCC----
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------ccccccccccccccCCCC
Confidence 46799999999998887765432 347889999999988888876321 222221233222 11345
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.||+|++++++|-..+.. ..|+++++.|+|||+++..|
T Consensus 1311 ~ydlvia~~vl~~t~~~~--~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1311 KADLLVCNCALATLGDPA--VAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp -CCEEEEECC----------------------CCEEEEEE
T ss_pred ceeEEEEcccccccccHH--HHHHHHHHhcCCCcEEEEEe
Confidence 799999999995444444 89999999999999998765
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00021 Score=64.05 Aligned_cols=46 Identities=24% Similarity=0.148 Sum_probs=41.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~ 202 (272)
.++..|||++||+|.++..+ ++.+.+++++|.++.+++.|++++..
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a-~~~g~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAA-ARWGRRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH-HHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 35679999999999999977 58889999999999999999998754
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0029 Score=57.87 Aligned_cols=112 Identities=9% Similarity=0.127 Sum_probs=79.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCC-HHHHHHHHHhccccCCC----------CC-----CCCCceEEEEeC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHM----------AP-----DMHKATNFFCVP 220 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S-~~mld~A~~~l~~~~~~----------~~-----~~~~~v~~~~~d 220 (272)
+...|+.+|||.......|. ..++.+..+|++ |.+++.-++.+...... .. -...+..++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~-~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLL-QMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHH-HHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhc-CcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 34689999999999999885 444567776644 77777776665432000 00 012578899999
Q ss_pred CCCCC--------C-CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 221 LQDFT--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 221 ~~~~~--------~-~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+.+.. . ..+...++++-.++.|++.++..++|+.+.+.. |+|.+++.|.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~ 233 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDP 233 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence 97631 1 224678899999999999999899999999887 7887766654
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0053 Score=59.59 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=68.6
Q ss_pred CCCCeeeEeecccchHHHHHHHh---c-----------CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR---Y-----------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~---~-----------~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~ 221 (272)
.++.+|+|-.||+|.+....... . ...+.|+|.++.+...|+-++-.. .....++.++|.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh------g~~~~~I~~~dt 289 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH------GLEYPRIDPENS 289 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH------TCSCCEEECSCT
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc------CCcccccccccc
Confidence 45569999999999998765321 1 236899999999999998765321 122345677776
Q ss_pred CCCCC----CCCcceeeEechhhhh---------c----C-hhhHHHHHHHHHHhcc-------cCcEEEE
Q 024100 222 QDFTP----ETGRYDVIWVQWCIGH---------L----T-DDDFVSFFKRAKENIA-------RSGTFLL 267 (272)
Q Consensus 222 ~~~~~----~~~~fDlIvs~~vl~h---------l----~-d~~~~~~l~~~~r~Lk-------pgG~liv 267 (272)
...+. ...+||+|+++--+.- + + ...-..|+..+.+.|+ |||++.+
T Consensus 290 L~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av 360 (530)
T 3ufb_A 290 LRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV 360 (530)
T ss_dssp TCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred ccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence 54432 1247999998754421 1 0 1112257888888887 6897643
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0022 Score=59.30 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=49.0
Q ss_pred CCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC
Q 024100 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~ 225 (272)
...|||||.|+|.+|..|+... ..+|++||+++.++...++.+. ..+++++.+|+.+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~---------~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---------GSPLQILKRDPYDWS 118 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---------TSSCEEECSCTTCHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc---------CCCEEEEECCccchh
Confidence 4789999999999999997442 5689999999999999988751 357899999996653
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.032 Score=50.40 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=73.2
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---------CCCc
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---------ETGR 230 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~ 230 (272)
-|+++|||-=.....+.......|.=|| -|..++..++.+..... ....+..++.+|+.+ .. ....
T Consensus 105 QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~---~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 105 QFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQ-DWPPALRSAGFDPSA 179 (310)
T ss_dssp EEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred eEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCC---CCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence 5999999977666655211223566667 58899988888853210 124578899999875 21 1123
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.=++++..+++|+++++...+++.+...+.||++++.
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~ 216 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV 216 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4567788999999998888999999999999987764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0067 Score=53.07 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=40.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~ 201 (272)
.++..|||..||+|.++... .+.+.+++++|.++.+++.|++++.
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a-~~~gr~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVA-KKLGRNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH-HHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 46779999999999999976 5888999999999999999999874
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0055 Score=55.34 Aligned_cols=92 Identities=12% Similarity=0.178 Sum_probs=58.9
Q ss_pred CCCCCeeeEeec------ccchHHHHHHHhcCC---cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC
Q 024100 155 NNQHLVALDCGS------GIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 155 ~~~~~~VLDiGc------GtG~~t~~LLa~~~~---~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~ 225 (272)
.+.+.+|||+|| -+|.. ++++..+ .|+.+|+.+-- .... .++++|.....
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~---VLr~~~p~g~~VVavDL~~~~-----------------sda~-~~IqGD~~~~~ 165 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA---VLRQWLPTGTLLVDSDLNDFV-----------------SDAD-STLIGDCATVH 165 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH---HHHHHSCTTCEEEEEESSCCB-----------------CSSS-EEEESCGGGEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH---HHHHhCCCCcEEEEeeCcccc-----------------cCCC-eEEEccccccc
Confidence 567889999996 67774 3234333 67888865410 0112 45899976654
Q ss_pred CCCCcceeeEech---hhhhcChhh------HHHHHHHHHHhcccCcEEEEe
Q 024100 226 PETGRYDVIWVQW---CIGHLTDDD------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~---vl~hl~d~~------~~~~l~~~~r~LkpgG~liv~ 268 (272)
.. ++||+|+|-. .-.+...+. .+.++.=+.+.|+|||.|+++
T Consensus 166 ~~-~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 166 TA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp ES-SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cC-CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 43 6899999743 223322222 346777778899999999875
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0039 Score=55.86 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=73.8
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC----CCCCCCccee
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETGRYDV 233 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fDl 233 (272)
+..+||+=+|+|.++.++++ .+.+++.+|.++..++.-++++.. ..++.++..|... +.++..+||+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred CCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 34699999999999999974 668999999999999999988742 3578999998533 2233357999
Q ss_pred eEechhhhhcChhhHHHHHHHHHH--hcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKE--NIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r--~LkpgG~liv 267 (272)
|++-=..+. ..+..++++.+.+ .+.|+|.+++
T Consensus 163 VfiDPPYe~--k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 163 IFIDPSYER--KEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp EEECCCCCS--TTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEECCCCCC--CcHHHHHHHHHHHhCccCCCeEEEE
Confidence 999766532 1234466766665 4568898765
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0097 Score=54.64 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=55.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---C--
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---E-- 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---~-- 227 (272)
+.+++.++|+.||.|..|..+|...+ ..|+++|.++.+++.|+ ++. ..+++++.+++.++.. .
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---------~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---------DPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---------CTTEEEEESCGGGHHHHHHHTT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---------CCcEEEEeCCHHHHHHHHHhcC
Confidence 45778999999999999998875543 47999999999999994 551 3578899988876521 1
Q ss_pred -CCcceeeEec
Q 024100 228 -TGRYDVIWVQ 237 (272)
Q Consensus 228 -~~~fDlIvs~ 237 (272)
.+++|.|+..
T Consensus 125 ~~~~vDgILfD 135 (347)
T 3tka_A 125 LIGKIDGILLD 135 (347)
T ss_dssp CTTCEEEEEEE
T ss_pred CCCcccEEEEC
Confidence 1258888853
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0076 Score=55.15 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=53.0
Q ss_pred CeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---Cccee
Q 024100 159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRYDV 233 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fDl 233 (272)
.+|+|+-||+|.++..+.... +..|.++|.++..++..+.++. ...++++|+.++.... ..+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----------~~~~~~~Di~~~~~~~~~~~~~D~ 71 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----------HTQLLAKTIEGITLEEFDRLSFDM 71 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECSCGGGCCHHHHHHHCCSE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----------ccccccCCHHHccHhHcCcCCcCE
Confidence 489999999999999885333 3478999999999999999873 2347788888775311 15899
Q ss_pred eEechh
Q 024100 234 IWVQWC 239 (272)
Q Consensus 234 Ivs~~v 239 (272)
|+...-
T Consensus 72 l~~gpP 77 (343)
T 1g55_A 72 ILMSPP 77 (343)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 996543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.033 Score=51.64 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=52.7
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC--------CCCc
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------ETGR 230 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~ 230 (272)
.+++|+-||.|.++..+....+..|.++|.++..++..+.++. +..++++|+.++.. ....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----------~~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----------RSLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----------TSEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----------CCceEecChhhcCHHHHHhhcccCCC
Confidence 3799999999999998854445566799999999999988763 45677888877642 2357
Q ss_pred ceeeEec
Q 024100 231 YDVIWVQ 237 (272)
Q Consensus 231 fDlIvs~ 237 (272)
+|+|+..
T Consensus 72 ~D~i~gg 78 (376)
T 3g7u_A 72 IDGIIGG 78 (376)
T ss_dssp CCEEEEC
T ss_pred eeEEEec
Confidence 9999953
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.038 Score=50.99 Aligned_cols=98 Identities=9% Similarity=-0.088 Sum_probs=64.1
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-C-----C
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-----P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~-----~ 226 (272)
+.++.+||-+|||. |..+..++...+. +|+++|.|++.++.+++ +. . +.+...-.++ . .
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lG---------a---~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD-AG---------F---ETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT-TT---------C---EEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-cC---------C---cEEcCCCcchHHHHHHHH
Confidence 56778999999986 8888888655566 89999999998888864 21 1 2222221221 0 0
Q ss_pred -CCCcceeeEechhhh---------hcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 -ETGRYDVIWVQWCIG---------HLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 -~~~~fDlIvs~~vl~---------hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....||+|+-.-.-. |+. +. ..+..+.+.|++||.++..
T Consensus 250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 250 LGKPEVDCGVDAVGFEAHGLGDEANTET-PN--GALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp HSSSCEEEEEECSCTTCBCSGGGTTSBC-TT--HHHHHHHHHEEEEEEEECC
T ss_pred hCCCCCCEEEECCCCccccccccccccc-cH--HHHHHHHHHHhcCCEEEEe
Confidence 112699998543321 111 12 4788889999999998753
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.09 Score=47.83 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=62.6
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-----CCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TPE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-----~~~ 227 (272)
+.++.+||-+|||. |..+..++...+. .|+++|.+++-++.+++.= .. .++...-+++ ...
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lG----------a~--~vi~~~~~~~~~~~~~~~ 255 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG----------AT--HVINSKTQDPVAAIKEIT 255 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT----------CS--EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcC----------CC--EEecCCccCHHHHHHHhc
Confidence 56778999999985 8888878654566 6999999999999887541 11 1222111111 011
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++.+|+|+-.-.- . ..+..+.+.|+++|.++..
T Consensus 256 ~gg~D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 256 DGGVNFALESTGS------P--EILKQGVDALGILGKIAVV 288 (371)
T ss_dssp TSCEEEEEECSCC------H--HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCcEEEECCCC------H--HHHHHHHHHHhcCCEEEEe
Confidence 2369998854331 2 4678889999999998764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.051 Score=50.77 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=39.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~ 202 (272)
+.++..++||||++|.++..++++.+ .+|.++||++...+..++++..
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 35778999999999999997752433 5899999999999999988753
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.16 Score=41.56 Aligned_cols=91 Identities=11% Similarity=0.029 Sum_probs=61.0
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-------
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------- 225 (272)
+.++.+||..|+ |.|..+..++...+.+|.+++.+++.++.+++ +. .. ..+ |..+..
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g---------~~--~~~--d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR-LG---------VE--YVG--DSRSVDFADEILE 101 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT-TC---------CS--EEE--ETTCSTHHHHHHH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC---------CC--EEe--eCCcHHHHHHHHH
Confidence 456789999994 67888887766678899999999988877754 21 11 111 221111
Q ss_pred -CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 -~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+.+|+|+.+-. . ..+..+.+.|+|||.++..
T Consensus 102 ~~~~~~~D~vi~~~g------~---~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 102 LTDGYGVDVVLNSLA------G---EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp HTTTCCEEEEEECCC------T---HHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCCeEEEECCc------h---HHHHHHHHHhccCCEEEEE
Confidence 11236999986532 1 4678888999999998764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.3 Score=44.74 Aligned_cols=98 Identities=10% Similarity=-0.018 Sum_probs=64.0
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CC------
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT------ 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~------ 225 (272)
+.++.+||-+|||. |..+..++...+. .|+++|.+++-++.+++. . . +.+...-++ +.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-G---------a---~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-G---------F---EIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-T---------C---EEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-C---------C---cEEccCCcchHHHHHHHH
Confidence 56778999999875 8888888644565 699999999999988653 1 1 222211111 10
Q ss_pred CCCCcceeeEechh----------hhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 PETGRYDVIWVQWC----------IGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~v----------l~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.....+|+|+-.-. .|| .++. ..+..+.+.|++||.++..
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~-~~~~--~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKH-EAPA--TVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGS-BCTT--HHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCCCEEEECCCCcccccccccccc-cchH--HHHHHHHHHHhcCCEEEEe
Confidence 01136999985432 222 2333 5788999999999998753
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.057 Score=49.11 Aligned_cols=101 Identities=8% Similarity=0.003 Sum_probs=65.6
Q ss_pred CCCeeeEeecccchHHHHHHHhcC---CcE-EEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---C
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF---NEV-DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---G 229 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~---~~v-~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~ 229 (272)
...+++|+-||.|.++..+ .+.+ .-| .++|.++..++..+.++.. . +++.|+.++.... .
T Consensus 9 ~~~~vidLFaG~GG~~~G~-~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~----------~--~~~~DI~~~~~~~i~~~ 75 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSY-ERSSININATFIPFDINEIANKIYSKNFKE----------E--VQVKNLDSISIKQIESL 75 (327)
T ss_dssp CCEEEEEETCTTTHHHHHH-HHSSCCCCEEEEEECCCHHHHHHHHHHHCC----------C--CBCCCTTTCCHHHHHHT
T ss_pred CCCEEEEECCChhHHHHHH-HHcCCCceEEEEEEECCHHHHHHHHHHCCC----------C--cccCChhhcCHHHhccC
Confidence 3558999999999999988 4554 455 6999999999999988732 1 5677888775321 2
Q ss_pred cceeeEechhhhhc----------ChhhHHHHHHHHHH-hccc---CcEEEEecC
Q 024100 230 RYDVIWVQWCIGHL----------TDDDFVSFFKRAKE-NIAR---SGTFLLSHS 270 (272)
Q Consensus 230 ~fDlIvs~~vl~hl----------~d~~~~~~l~~~~r-~Lkp---gG~liv~E~ 270 (272)
.+|+++.+.-...+ .++....++.++.+ .++. .-.+++.|+
T Consensus 76 ~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lEN 130 (327)
T 3qv2_A 76 NCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIEN 130 (327)
T ss_dssp CCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEE
T ss_pred CCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEc
Confidence 58999954322222 11222356666666 5542 234555554
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.18 E-value=0.065 Score=48.68 Aligned_cols=67 Identities=13% Similarity=-0.018 Sum_probs=49.7
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-CcceeeEe
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWV 236 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlIvs 236 (272)
..+++|+.||+|.++..+....+..|.++|.++..++..+.++... . ++|+.++.... ..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~----------~---~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK----------P---EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC----------C---BSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC----------C---cCCHHHcCHhhCCCCCEEEE
Confidence 3589999999999999885444566788999999999999987421 1 56776654321 25899995
Q ss_pred c
Q 024100 237 Q 237 (272)
Q Consensus 237 ~ 237 (272)
.
T Consensus 78 g 78 (327)
T 2c7p_A 78 G 78 (327)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.17 Score=45.18 Aligned_cols=91 Identities=9% Similarity=0.085 Sum_probs=62.1
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC---CC----
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FT---- 225 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~---~~---- 225 (272)
+.++.+||-.|| |.|..+..++...+.+|.+++.+++.++.+++ +. . . ..+ |..+ +.
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g---------~-~-~~~--d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IG---------F-D-AAF--NYKTVNSLEEALK 208 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TT---------C-S-EEE--ETTSCSCHHHHHH
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cC---------C-c-EEE--ecCCHHHHHHHHH
Confidence 566789999997 78888888876678899999999988888843 31 1 1 111 2221 10
Q ss_pred -CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 -~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+.+|+++.+-.- ..+..+.+.|++||.++..
T Consensus 209 ~~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 209 KASPDGYDCYFDNVGG---------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHCTTCEEEEEESSCH---------HHHHHHHTTEEEEEEEEEC
T ss_pred HHhCCCCeEEEECCCh---------HHHHHHHHHHhcCCEEEEE
Confidence 011469998865441 2467788999999998754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.084 Score=47.62 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=62.6
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+.++.+||-+|+|. |..+..++...+.+|++++.+++-++.+++ +. ... ++ .+.+.+. ..+|+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lG---------a~~--v~-~~~~~~~---~~~D~ 237 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS-MG---------VKH--FY-TDPKQCK---EELDF 237 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH-TT---------CSE--EE-SSGGGCC---SCEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh-cC---------CCe--ec-CCHHHHh---cCCCE
Confidence 56778999999874 888888865567899999999988888876 31 111 22 3333332 27999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+-.-.- + ..+..+.+.|+|+|.++..
T Consensus 238 vid~~g~-----~---~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 238 IISTIPT-----H---YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EEECCCS-----C---CCHHHHHTTEEEEEEEEEC
T ss_pred EEECCCc-----H---HHHHHHHHHHhcCCEEEEE
Confidence 9854331 2 2566778899999998864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.21 Score=44.69 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=63.4
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CCCCCC-----C
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT-----P 226 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~~~~~-----~ 226 (272)
+.++.+||-.|| |.|..+..++...+.+|.+++.+++-++.+++.+.. . ..+.. +..++. .
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~----------~-~~~d~~~~~~~~~~~~~~ 221 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGF----------D-DAFNYKEESDLTAALKRC 221 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCC----------S-EEEETTSCSCSHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC----------c-eEEecCCHHHHHHHHHHH
Confidence 567789999997 688888888766778999999999888888754421 1 11111 111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+.+|+|+.+-.- ..+..+.+.|++||.++..
T Consensus 222 ~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 222 FPNGIDIYFENVGG---------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp CTTCEEEEEESSCH---------HHHHHHHTTEEEEEEEEEC
T ss_pred hCCCCcEEEECCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 11369998865431 3677788999999998764
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.24 Score=43.51 Aligned_cols=149 Identities=7% Similarity=0.074 Sum_probs=83.2
Q ss_pred HHHHHHhhhhcchhhhhccccCCCCCcchhhhhHHHHH--HHHHhccCCCccCCCCCeeeEeecccchHHHHHHHh----
Q 024100 105 WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFL--QMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---- 178 (272)
Q Consensus 105 ~y~~~~~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L--~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~---- 178 (272)
.-.+-.+|+..-+.+....+..+..+... .....++ ..+.... ..-++.|+|+||-.|..+..+ +.
T Consensus 22 ~~~~l~~~~~~~~~~~~e~l~~~~~~~~~--~~l~~~l~~~~l~~~i-----~~vpG~ivE~GV~rG~S~~~~-a~~~~~ 93 (257)
T 3tos_A 22 TTQRLTKLLTNSPIPTEELVNNLPLFLRR--HQMTDLLSMDALYRQV-----LDVPGVIMEFGVRFGRHLGTF-AALRGV 93 (257)
T ss_dssp HHHHHHHHHHTCCSCGGGGGGCGGGGCCH--HHHHHHHHHHHHHHHT-----TTSCSEEEEECCTTCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHhHHhhhhH--HHHHHHHHHHHHHHHh-----hCCCCeEEEEecccCHHHHHH-HHHHHH
Confidence 33445667776555555555555422221 1111122 2333322 134679999999999988865 33
Q ss_pred -----cCCcEEEEe-----CCHH----------------------HHHHH---HHhccccCCCCCCCCCceEEEEeCCCC
Q 024100 179 -----YFNEVDLLE-----PVSH----------------------FLDAA---RESLAPENHMAPDMHKATNFFCVPLQD 223 (272)
Q Consensus 179 -----~~~~v~~vD-----~S~~----------------------mld~A---~~~l~~~~~~~~~~~~~v~~~~~d~~~ 223 (272)
...++.++| |.+. .++.. .++.... .....+++++.+++.+
T Consensus 94 l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~----g~~~~~i~li~G~~~d 169 (257)
T 3tos_A 94 YEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFF----GHVTQRSVLVEGDVRE 169 (257)
T ss_dssp HCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTSTT----TTSCCSEEEEESCHHH
T ss_pred hcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhhhhc----CCCCCcEEEEEecHHH
Confidence 135889998 3321 11111 1111111 0113689999999865
Q ss_pred CCC------CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 224 FTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 224 ~~~------~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.-+ +..++|+|++-.-. + ..-...+..+...|+|||+|++-+
T Consensus 170 TL~~~l~~~~~~~~dlv~ID~D~-Y---~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 170 TVPRYLAENPQTVIALAYFDLDL-Y---EPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp HHHHHHHHCTTCCEEEEEECCCC-H---HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHhCCCCceEEEEEcCcc-c---chHHHHHHHHHHHhCCCcEEEEcC
Confidence 321 23479999875532 2 223367888999999999988654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.22 Score=44.61 Aligned_cols=94 Identities=18% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 229 (272)
..++.+||-.|+|. |..+..++...+.+|++++.+++-++.+++. . .. ..+...-+++. -..+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l-G---------a~--~~i~~~~~~~~~~~~~~~g 231 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL-G---------AE--VAVNARDTDPAAWLQKEIG 231 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-T---------CS--EEEETTTSCHHHHHHHHHS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc-C---------CC--EEEeCCCcCHHHHHHHhCC
Confidence 56778999999874 8888888766788999999999999988763 1 11 12221111110 0012
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+-... .. ..++.+.+.|+|+|.++..
T Consensus 232 ~~d~vid~~g------~~--~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 232 GAHGVLVTAV------SP--KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SEEEEEESSC------CH--HHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEeCC------CH--HHHHHHHHHhccCCEEEEe
Confidence 6888875432 12 4778888999999998764
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.33 Score=45.16 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhc------CC--cEEEEeCCHHHHHHHHHhcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY------FN--EVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~------~~--~v~~vD~S~~mld~A~~~l~ 201 (272)
+.+-.|+|+|+|.|.++..+|... +. ++.+||+|+...+.-++.+.
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 132 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 132 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence 445689999999999999887321 12 78999999999887777764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.12 E-value=0.29 Score=44.19 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=61.3
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC---CCC----CC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQD----FT 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d---~~~----~~ 225 (272)
+.++.+||-+|+|. |..+..++...+. +|++++.++.-++.+++. . .. .++..+ -.+ +.
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-G---------a~--~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-G---------AD--LVLQISKESPQEIARKVE 236 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-T---------CS--EEEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-C---------CC--EEEcCcccccchHHHHHH
Confidence 56778999999884 8888888655666 899999999988888753 1 11 122211 000 00
Q ss_pred -CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 -~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.....+|+|+-.-.- + ..+..+.+.|+|||.++..
T Consensus 237 ~~~~~g~D~vid~~g~-----~---~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 237 GQLGCKPEVTIECTGA-----E---ASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHTSCCSEEEECSCC-----H---HHHHHHHHHSCTTCEEEEC
T ss_pred HHhCCCCCEEEECCCC-----h---HHHHHHHHHhcCCCEEEEE
Confidence 001368998854321 1 3677788999999998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.61 Score=36.17 Aligned_cols=92 Identities=11% Similarity=-0.046 Sum_probs=58.6
Q ss_pred CCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcce
Q 024100 158 HLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (272)
Q Consensus 158 ~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD 232 (272)
..+|+=+|||. |......|.+.+..|+++|.+++-++.+++. .+.++.+|..+... .-..+|
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-------------g~~~i~gd~~~~~~l~~a~i~~ad 73 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-------------GVRAVLGNAANEEIMQLAHLECAK 73 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-------------TCEEEESCTTSHHHHHHTTGGGCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-------------CCCEEECCCCCHHHHHhcCcccCC
Confidence 34788899873 5444445456788999999999988877652 35677788754321 113688
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|++... +++....+....+.+.|+..++.
T Consensus 74 ~vi~~~~-----~~~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 74 WLILTIP-----NGYEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp EEEECCS-----CHHHHHHHHHHHHHHCSSSEEEE
T ss_pred EEEEECC-----ChHHHHHHHHHHHHHCCCCeEEE
Confidence 8876533 22222334445666778877764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=92.93 E-value=1.4 Score=33.23 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=52.4
Q ss_pred CeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCccee
Q 024100 159 LVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fDl 233 (272)
.+|+=+|+|. |......|.+.+.+|.++|.++..++..++.. .+.++.+|..+.. .....+|+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~------------~~~~~~~d~~~~~~l~~~~~~~~d~ 72 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI------------DALVINGDCTKIKTLEDAGIEDADM 72 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------------SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc------------CcEEEEcCCCCHHHHHHcCcccCCE
Confidence 4788888763 33332233456778999999988776665432 2345566654321 11236898
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+..-- +++....+..+.+.+.++-.++.
T Consensus 73 vi~~~~-----~~~~~~~~~~~~~~~~~~~ii~~ 101 (140)
T 1lss_A 73 YIAVTG-----KEEVNLMSSLLAKSYGINKTIAR 101 (140)
T ss_dssp EEECCS-----CHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEeeC-----CchHHHHHHHHHHHcCCCEEEEE
Confidence 887632 22333455555666777644443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.51 Score=42.95 Aligned_cols=97 Identities=15% Similarity=0.016 Sum_probs=62.9
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC----CC-CCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QD-FTPE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~----~~-~~~~ 227 (272)
+.++.+||=+|+|. |..+..++...+. .|.+++.++.-++.+++. .. ...+++...|+ .+ ....
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga--------~~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV-GA--------TATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-TC--------SEEECTTSSCHHHHHHSTTSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CC--------CEEECCCCcCHHHHHHhhhhcc
Confidence 56778999999874 8888878655666 899999999988888764 11 11111111111 01 0012
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.+|+|+-.-. .. ..+..+.+.|++||.++..
T Consensus 251 ~gg~Dvvid~~G------~~--~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIECAG------VA--ETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEECSC------CH--HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCC------CH--HHHHHHHHHhccCCEEEEE
Confidence 247999986432 12 4778889999999998864
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.57 Score=42.08 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=61.8
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-CCCCC------C
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~~~~~------~ 226 (272)
+.++.+||-+|+|. |..+..++...+.+|.+++.+++-++.+++. . .. ..+..+ -.++. .
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l-G---------a~--~~~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC-G---------AD--VTLVVDPAKEEESSIIERI 233 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-T---------CS--EEEECCTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh-C---------CC--EEEcCcccccHHHHHHHHh
Confidence 45778999999874 7888878655677899999999988888753 1 11 122211 01110 0
Q ss_pred C---CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 E---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~---~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
. ...+|+|+-+-.- . ..++.+.+.|+++|.++..
T Consensus 234 ~~~~g~g~D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 234 RSAIGDLPNVTIDCSGN------E--KCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHSSSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEEC
T ss_pred ccccCCCCCEEEECCCC------H--HHHHHHHHHHhcCCEEEEE
Confidence 0 1369998854331 1 3677788999999998764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.32 Score=43.33 Aligned_cols=94 Identities=12% Similarity=0.006 Sum_probs=63.4
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CC
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 227 (272)
+.++.+||-.|| |.|..+..++...+.+|.+++.+++-++.+.+.+.. -..+...-+++. ..
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~ 215 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF-----------DGAIDYKNEDLAAGLKREC 215 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC-----------SEEEETTTSCHHHHHHHHC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC-----------CEEEECCCHHHHHHHHHhc
Confidence 567889999998 688888888766788999999999888888444421 111221111110 01
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.+|+|+.+-.- ..+..+.+.|+++|.++..
T Consensus 216 ~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 216 PKGIDVFFDNVGG---------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp TTCEEEEEESSCH---------HHHHHHHTTEEEEEEEEEC
T ss_pred CCCceEEEECCCc---------chHHHHHHHHhhCCEEEEE
Confidence 2369998864331 3677788999999998864
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.79 E-value=0.24 Score=44.61 Aligned_cols=46 Identities=11% Similarity=-0.036 Sum_probs=41.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~ 202 (272)
.++..|||.-||+|..+... .+.+.+..++|.++.+++.+++++..
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa-~~~gr~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVA-ERESRKWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHH-HHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred CCCCEEEECCCCCCHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 46779999999999999966 57889999999999999999999854
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.72 E-value=0.36 Score=43.45 Aligned_cols=94 Identities=15% Similarity=-0.009 Sum_probs=62.1
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||=+|+|. |..+..++...+. .|.++|.+++-++.+++.=. . .++...-.++. .
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------~---~vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA---------T---DIINYKNGDIVEQILKAT 231 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC---------C---EEECGGGSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC---------c---eEEcCCCcCHHHHHHHHc
Confidence 56778999999874 8888878645566 79999999998888876411 1 11211111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-.-. .+ ..+..+.+.|+|||.++..
T Consensus 232 ~g~g~D~v~d~~g-----~~---~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 232 DGKGVDKVVIAGG-----DV---HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp TTCCEEEEEECSS-----CT---THHHHHHHHEEEEEEEEEC
T ss_pred CCCCCCEEEECCC-----Ch---HHHHHHHHHHhcCCEEEEe
Confidence 1236999985432 12 3678888999999998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.073 Score=48.70 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=61.0
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-CCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fD 232 (272)
+.++.+||-+|+|. |..+..++...+.+|++++.|++-++.+++ +.. ...++....+ ++.+. +.+|
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-lGa--------~~vi~~~~~~~~~~~~---~g~D 259 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LGA--------DEVVNSRNADEMAAHL---KSFD 259 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HTC--------SEEEETTCHHHHHTTT---TCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC--------cEEeccccHHHHHHhh---cCCC
Confidence 56778999999884 888887865567789999999988888876 321 1111110111 11121 4699
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+-.-.- + ..++.+.+.|+++|.++..
T Consensus 260 vvid~~g~-----~---~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 260 FILNTVAA-----P---HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEEECCSS-----C---CCHHHHHTTEEEEEEEEEC
T ss_pred EEEECCCC-----H---HHHHHHHHHhccCCEEEEe
Confidence 98854331 1 2456677899999998754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.45 Score=42.89 Aligned_cols=95 Identities=16% Similarity=-0.028 Sum_probs=63.5
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCc-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-----CCC----C
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-----PLQ----D 223 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-----d~~----~ 223 (272)
+.++.+||=+|+|. |..+..++...+.+ |.+++.+++-++.+++. .. ..+.+... ++. +
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~---------~~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP---------EVVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT---------TCEEEECCSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch---------hcccccccccchHHHHHHHHH
Confidence 56778999999874 88888886555665 99999999999999876 31 12233211 110 0
Q ss_pred CCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 224 ~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.. ....+|+|+-.-. .. ..+..+.+.|++||.++..
T Consensus 247 ~t-~g~g~Dvvid~~g------~~--~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 247 SF-GGIEPAVALECTG------VE--SSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HT-SSCCCSEEEECSC------CH--HHHHHHHHHSCTTCEEEEC
T ss_pred Hh-CCCCCCEEEECCC------Ch--HHHHHHHHHhcCCCEEEEE
Confidence 11 1246999886433 12 4677888999999998864
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.075 Score=47.86 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=61.3
Q ss_pred CCCeeeEeeccc-chHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE-eCC-CCCCCCCCcc
Q 024100 157 QHLVALDCGSGI-GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPL-QDFTPETGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGt-G~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~-~d~-~~~~~~~~~f 231 (272)
++.+||-+|+|. |..+..++... +.+|++++.|++-++.+++. .. ...+++.. .++ .++. ....+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-Ga--------~~vi~~~~~~~~~~~~~-~g~g~ 239 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-GA--------DYVSEMKDAESLINKLT-DGLGA 239 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-TC--------SEEECHHHHHHHHHHHH-TTCCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-CC--------CEEeccccchHHHHHhh-cCCCc
Confidence 677999999874 78888786556 67899999999988888763 21 11111111 111 1111 12369
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+-.-.- + ..++.+.+.|+|+|.++..
T Consensus 240 D~vid~~g~-----~---~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 240 SIAIDLVGT-----E---ETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEESSCC-----H---HHHHHHHHHEEEEEEEEEC
T ss_pred cEEEECCCC-----h---HHHHHHHHHhhcCCEEEEe
Confidence 999865431 1 4678888999999998764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.86 E-value=1.1 Score=36.05 Aligned_cols=92 Identities=15% Similarity=0.021 Sum_probs=54.1
Q ss_pred CCeeeEeecc-cchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----C-CCCc
Q 024100 158 HLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----P-ETGR 230 (272)
Q Consensus 158 ~~~VLDiGcG-tG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~ 230 (272)
..+|+=+||| .|......|.+. +..|+++|.+++-++.+++. .+.++.+|..+.. . .-..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~-------------g~~~~~gd~~~~~~l~~~~~~~~ 105 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE-------------GRNVISGDATDPDFWERILDTGH 105 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT-------------TCCEEECCTTCHHHHHTBCSCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC-------------CCCEEEcCCCCHHHHHhccCCCC
Confidence 4578888887 354444444566 78999999999877776542 2345566654321 1 1236
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+|+...- +++....+-...+.+.|++.++.
T Consensus 106 ad~vi~~~~-----~~~~~~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 106 VKLVLLAMP-----HHQGNQTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp CCEEEECCS-----SHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCEEEEeCC-----ChHHHHHHHHHHHHHCCCCEEEE
Confidence 898886432 22222333344555667777664
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.34 Score=43.54 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=62.3
Q ss_pred CCCCCeeeEeecc--cchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-----CC
Q 024100 155 NNQHLVALDCGSG--IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TP 226 (272)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-----~~ 226 (272)
+.+..+||-.|+| .|..+..++... +.+|.+++.+++.++.+++. .. . .++...-.++ ..
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~-g~---------~--~~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GA---------D--YVINASMQDPLAEIRRI 235 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TC---------S--EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC---------C--EEecCCCccHHHHHHHH
Confidence 5577899999987 778888787666 78999999999988888653 10 1 1111111111 00
Q ss_pred CC-CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~-~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.. +.+|+|+.+-.- . ..++...+.|+++|.++..
T Consensus 236 ~~~~~~d~vi~~~g~------~--~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 236 TESKGVDAVIDLNNS------E--KTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TTTSCEEEEEESCCC------H--HHHTTGGGGEEEEEEEEEC
T ss_pred hcCCCceEEEECCCC------H--HHHHHHHHHHhcCCEEEEE
Confidence 11 479998865431 1 4677778899999998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.6 Score=42.23 Aligned_cols=93 Identities=13% Similarity=-0.039 Sum_probs=62.5
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------CC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~~ 227 (272)
+.++.+||=+|+|. |..+..++...+.+|++++.+++-++.+++. . . -.++..+-.++. ..
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l-G---------a--~~vi~~~~~~~~~~v~~~~~ 254 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL-G---------A--DHGINRLEEDWVERVYALTG 254 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-T---------C--SEEEETTTSCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc-C---------C--CEEEcCCcccHHHHHHHHhC
Confidence 56788999999874 8888888666688999999999988888763 1 1 112222211211 01
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+|+|+-+-. . ..+..+.+.|+|+|.++..
T Consensus 255 g~g~D~vid~~g------~---~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 255 DRGADHILEIAG------G---AGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp TCCEEEEEEETT------S---SCHHHHHHHEEEEEEEEEE
T ss_pred CCCceEEEECCC------h---HHHHHHHHHhhcCCEEEEE
Confidence 236999886533 1 2466677899999998764
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.52 Score=42.16 Aligned_cols=93 Identities=13% Similarity=-0.036 Sum_probs=60.4
Q ss_pred CCCCCeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||-+||| .|..+..++...+.+|++++.+++-++.+++.-. . ..+...-.++. .
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga---------~---~~~~~~~~~~~~~~~~~~ 209 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA---------A---YVIDTSTAPLYETVMELT 209 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC---------S---EEEETTTSCHHHHHHHHT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC---------c---EEEeCCcccHHHHHHHHh
Confidence 5678899999986 7888888876678899999998888888876311 1 12221111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-+-.- +. +.+..+.|+++|.++..
T Consensus 210 ~~~g~Dvvid~~g~-----~~----~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 210 NGIGADAAIDSIGG-----PD----GNELAFSLRPNGHFLTI 242 (340)
T ss_dssp TTSCEEEEEESSCH-----HH----HHHHHHTEEEEEEEEEC
T ss_pred CCCCCcEEEECCCC-----hh----HHHHHHHhcCCCEEEEE
Confidence 12369999865432 21 12334789999998864
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.36 Score=42.75 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=59.6
Q ss_pred eeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-CCCCCCCCCcceeeEe
Q 024100 160 VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYDVIWV 236 (272)
Q Consensus 160 ~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fDlIvs 236 (272)
+||=.|+ |.|..+..++...+.+|++++.|++-++.+++. .. ...++....+ +..+ ..+.+|+|+-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l-Ga--------~~vi~~~~~~~~~~~--~~~~~d~v~d 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL-GA--------NRILSRDEFAESRPL--EKQLWAGAID 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH-TC--------SEEEEGGGSSCCCSS--CCCCEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CC--------CEEEecCCHHHHHhh--cCCCccEEEE
Confidence 5998886 589999988766788999999999988888763 21 1111111111 1122 2347998875
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.-. . ..+..+.+.|+++|.++..
T Consensus 218 ~~g-----~----~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 218 TVG-----D----KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp SSC-----H----HHHHHHHHTEEEEEEEEEC
T ss_pred CCC-----c----HHHHHHHHHHhcCCEEEEE
Confidence 422 1 3778888999999998864
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.3 Score=43.91 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=62.3
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC---CCC----
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---DFT---- 225 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~---~~~---- 225 (272)
+.++.+||-+|+ |.|..+..++...+.+|.+++.+++.++.+++ +. . . ..+ |.. ++.
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~-~g---------~-~-~~~--d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS-IG---------G-E-VFI--DFTKEKDIVGAVL 232 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH-TT---------C-C-EEE--ETTTCSCHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH-cC---------C-c-eEE--ecCccHhHHHHHH
Confidence 567789999998 68888888876677899999988887877765 21 1 1 111 222 110
Q ss_pred -CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 -~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+.+|+|+.+-.. . ..++.+.+.|+++|.++..
T Consensus 233 ~~~~~~~D~vi~~~g~------~--~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 233 KATDGGAHGVINVSVS------E--AAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHHTSCEEEEEECSSC------H--HHHHHHTTSEEEEEEEEEC
T ss_pred HHhCCCCCEEEECCCc------H--HHHHHHHHHHhcCCEEEEE
Confidence 001258998865431 1 4678888999999998764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=0.59 Score=41.59 Aligned_cols=93 Identities=17% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||=+|+ |.|..+..++...+.+|.+++.+++-++.+++. . .-..+...-+++. .
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-g-----------a~~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY-G-----------AEYLINASKEDILRQVLKFT 213 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-T-----------CSEEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C-----------CcEEEeCCCchHHHHHHHHh
Confidence 567789999993 678888888766788999999999988888663 1 1112222111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+.+-.- ..+..+.+.|++||.++..
T Consensus 214 ~~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 214 NGKGVDASFDSVGK---------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TTSCEEEEEECCGG---------GGHHHHHHHEEEEEEEEEC
T ss_pred CCCCceEEEECCCh---------HHHHHHHHHhccCCEEEEE
Confidence 12369999865431 2566778899999998764
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.3 Score=43.52 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=49.5
Q ss_pred eeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-CcceeeEe
Q 024100 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWV 236 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlIvs 236 (272)
+|||+=||.|.++..| .+. +.-+-++|.++..++.-+.+.. -.++++|+.++.... ...|+|+.
T Consensus 2 kvidLFsG~GG~~~G~-~~aG~~~v~a~e~d~~a~~ty~~N~~------------~~~~~~DI~~i~~~~~~~~D~l~g 67 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGF-QKAGFRIICANEYDKSIWKTYESNHS------------AKLIKGDISKISSDEFPKCDGIIG 67 (331)
T ss_dssp EEEEESCTTCHHHHHH-HHTTCEEEEEEECCTTTHHHHHHHCC------------SEEEESCGGGCCGGGSCCCSEEEC
T ss_pred eEEEeCcCccHHHHHH-HHCCCEEEEEEeCCHHHHHHHHHHCC------------CCcccCChhhCCHhhCCcccEEEe
Confidence 7999999999999988 455 5556789999999988888762 256788988775432 36899994
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.71 E-value=0.94 Score=40.47 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=61.5
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC------
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------ 227 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~------ 227 (272)
+.++.+||-+|+| .|..+..++...+.+|++++.++.-++.+++ +. .. .+ .|..+-+..
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lG---------a~--~~--~d~~~~~~~~~~~~~ 227 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-LG---------AD--LV--VNPLKEDAAKFMKEK 227 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TT---------CS--EE--ECTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-CC---------CC--EE--ecCCCccHHHHHHHH
Confidence 4567899999986 5888887766667899999999998888865 31 11 11 122211100
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.+|+|+.+-.. . ..++.+.+.|+++|.++..
T Consensus 228 ~~~~d~vid~~g~-----~---~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 228 VGGVHAAVVTAVS-----K---PAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HSSEEEEEESSCC-----H---HHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCEEEECCCC-----H---HHHHHHHHHhhcCCEEEEe
Confidence 0368998864331 1 4677888999999998764
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.33 Score=43.43 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=52.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCc---EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--- 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~---v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~--- 228 (272)
.....+++|+=||.|.++..+ .+.+.+ |.++|.++..++.-+.+.. ...++++|+.++...+
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~-~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----------~~~~~~~DI~~i~~~~i~~ 80 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVL-KDLGIQVDRYIASEVCEDSITVGMVRHQ-----------GKIMYVGDVRSVTQKHIQE 80 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHH-HHTTBCEEEEEEECCCHHHHHHHHHHTT-----------TCEEEECCGGGCCHHHHHH
T ss_pred cCCCCEEEEeCcCccHHHHHH-HHCCCccceEEEEECCHHHHHHHHHhCC-----------CCceeCCChHHccHHHhcc
Confidence 345669999999999999988 455444 5889999998888877752 3357788988775321
Q ss_pred -CcceeeEe
Q 024100 229 -GRYDVIWV 236 (272)
Q Consensus 229 -~~fDlIvs 236 (272)
+.+|+|+.
T Consensus 81 ~~~~Dll~g 89 (295)
T 2qrv_A 81 WGPFDLVIG 89 (295)
T ss_dssp TCCCSEEEE
T ss_pred cCCcCEEEe
Confidence 36899994
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.50 E-value=0.9 Score=40.93 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=61.6
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||-.|+ |.|..+..++...+.+|.+++.+++-++.+++. . .. ..+..+-+++. .
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-g---------a~--~~~d~~~~~~~~~~~~~~ 235 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN-G---------AH--EVFNHREVNYIDKIKKYV 235 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-T---------CS--EEEETTSTTHHHHHHHHH
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc-C---------CC--EEEeCCCchHHHHHHHHc
Confidence 567789999996 678888888766788999999999888877542 1 11 11221111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+.+-.- ..+..+.+.|+++|.++..
T Consensus 236 ~~~~~D~vi~~~G~---------~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 236 GEKGIDIIIEMLAN---------VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp CTTCEEEEEESCHH---------HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCcEEEEECCCh---------HHHHHHHHhccCCCEEEEE
Confidence 12369998866441 2466778999999998764
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.20 E-value=1.9 Score=33.00 Aligned_cols=68 Identities=9% Similarity=-0.036 Sum_probs=43.9
Q ss_pred CeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCccee
Q 024100 159 LVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fDl 233 (272)
.+|+=+|||. |......|.+.+.+|.++|.+++-++.+++. .+.++.+|..+... .-..+|+
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-------------~~~~~~gd~~~~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-------------GFDAVIADPTDESFYRSLDLEGVSA 73 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-------------TCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-------------CCcEEECCCCCHHHHHhCCcccCCE
Confidence 3788899863 4433333456678999999999887777642 24677777755321 1236888
Q ss_pred eEechh
Q 024100 234 IWVQWC 239 (272)
Q Consensus 234 Ivs~~v 239 (272)
|++..-
T Consensus 74 vi~~~~ 79 (141)
T 3llv_A 74 VLITGS 79 (141)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 886443
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.21 Score=45.46 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=49.9
Q ss_pred CeeeEeecccchHHHHHHHhcC---CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC---CCcce
Q 024100 159 LVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD 232 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~---~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD 232 (272)
.+++|+-||.|.++..+. +.+ .-|.++|.++..++.-+.++. ...+++.|+.++... ...+|
T Consensus 4 ~~~idLFaG~GG~~~G~~-~aG~~~~~v~a~e~d~~a~~ty~~N~~-----------~~~~~~~DI~~~~~~~~~~~~~D 71 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWK-ESGLDGEIVAAVDINTVANSVYKHNFP-----------ETNLLNRNIQQLTPQVIKKWNVD 71 (333)
T ss_dssp EEEEEETCTTTHHHHHHH-HHTCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECCCGGGCCHHHHHHTTCC
T ss_pred CEEEEECcCccHHHHHHH-HcCCCceEEEEEeCCHHHHHHHHHhCC-----------CCceeccccccCCHHHhccCCCC
Confidence 389999999999999884 543 457789999999999988863 234667888777532 12589
Q ss_pred eeEe
Q 024100 233 VIWV 236 (272)
Q Consensus 233 lIvs 236 (272)
+++.
T Consensus 72 ~l~g 75 (333)
T 4h0n_A 72 TILM 75 (333)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9994
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=1.1 Score=40.19 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=61.0
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+ ++.+||-+|+| .|..+..++...+. +|++++.+++-++.+++. .. . .++..+-+++. .
T Consensus 166 ~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~-Ga---------~--~~~~~~~~~~~~~v~~~~ 232 (348)
T 2d8a_A 166 I-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV-GA---------D--YVINPFEEDVVKEVMDIT 232 (348)
T ss_dssp C-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH-TC---------S--EEECTTTSCHHHHHHHHT
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC---------C--EEECCCCcCHHHHHHHHc
Confidence 5 77899999986 47888877655676 899999999888888753 10 1 11111111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+..-.. . ..++.+.+.|+++|.++..
T Consensus 233 ~g~g~D~vid~~g~-----~---~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 233 DGNGVDVFLEFSGA-----P---KALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp TTSCEEEEEECSCC-----H---HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCCEEEECCCC-----H---HHHHHHHHHHhcCCEEEEE
Confidence 11369998865331 1 4677888999999998764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=89.89 E-value=0.5 Score=42.58 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=39.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCH---HHHHHHHHhccc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAP 202 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~---~mld~A~~~l~~ 202 (272)
.++..|||.-||+|..+... .+.+.+.+++|.++ .+++.+++++..
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa-~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVA-IQEGRNSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHH-HHHTCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred CCCCEEEecCCCCCHHHHHH-HHcCCcEEEEECCccHHHHHHHHHHHHHH
Confidence 46779999999999999966 47789999999999 999999999853
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=89.87 E-value=0.18 Score=44.75 Aligned_cols=57 Identities=5% Similarity=0.065 Sum_probs=37.7
Q ss_pred CceEEEEeCCCCC-C-CCCCcceeeEechhhhhcCh------------------hhHHHHHHHHHHhcccCcEEEEe
Q 024100 212 KATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTD------------------DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 212 ~~v~~~~~d~~~~-~-~~~~~fDlIvs~~vl~hl~d------------------~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+.++++|..++ . .++++||+|+++--.....+ ..+..+++++.++|+|||.+++.
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4578999998663 2 34579999998643211100 11346788999999999988653
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.88 Score=40.67 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=62.4
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.+..+||-.|+ |.|..+..++...+.+|++++.+++-++.+++ +. .. ..+...-.++. .
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g---------a~--~~~d~~~~~~~~~~~~~~ 231 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA-LG---------AD--ETVNYTHPDWPKEVRRLT 231 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HT---------CS--EEEETTSTTHHHHHHHHT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cC---------CC--EEEcCCcccHHHHHHHHh
Confidence 567789999998 68888888876677899999999998888865 31 11 11211111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+.+-. . ..++.+.+.|+++|.++..
T Consensus 232 ~~~~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 232 GGKGADKVVDHTG-A--------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TTTCEEEEEESSC-S--------SSHHHHHHHEEEEEEEEES
T ss_pred CCCCceEEEECCC-H--------HHHHHHHHhhccCCEEEEE
Confidence 1236999886543 1 2466778899999998764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.73 E-value=0.2 Score=45.64 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=61.6
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC--CCCCC-----
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP--LQDFT----- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d--~~~~~----- 225 (272)
+.++.+||=+|+| .|..+..++...+. +|+++|.+++-++.+++. . .. .++... -+++.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l-G---------a~--~vi~~~~~~~~~~~~i~~ 258 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF-G---------VN--EFVNPKDHDKPIQEVIVD 258 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT-T---------CC--EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-C---------Cc--EEEccccCchhHHHHHHH
Confidence 5677899999987 58888878655566 899999999988888653 1 11 111111 11110
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
..++.+|+|+-.-. .+ ..+..+.+.|++| |.++..
T Consensus 259 ~~~gg~D~vid~~g-----~~---~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 259 LTDGGVDYSFECIG-----NV---SVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HTTSCBSEEEECSC-----CH---HHHHHHHHTBCTTTCEEEEC
T ss_pred hcCCCCCEEEECCC-----CH---HHHHHHHHHhhccCCEEEEE
Confidence 11236999885433 12 4778889999997 988764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=89.73 E-value=0.44 Score=42.08 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=58.4
Q ss_pred cCCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.+.++.+||=+|+| .|..+..++...+.+|++++ |++-++.+++. .. -.++. |.+++ .+.+|
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l-Ga-----------~~v~~-d~~~v---~~g~D 201 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR-GV-----------RHLYR-EPSQV---TQKYF 201 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH-TE-----------EEEES-SGGGC---CSCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc-CC-----------CEEEc-CHHHh---CCCcc
Confidence 35678899999987 58888888655677999999 88888888763 11 11111 32223 35799
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+-.-.- + .+..+.+.|+++|.++..
T Consensus 202 vv~d~~g~-----~----~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 202 AIFDAVNS-----Q----NAAALVPSLKANGHIICI 228 (315)
T ss_dssp EEECC----------------TTGGGEEEEEEEEEE
T ss_pred EEEECCCc-----h----hHHHHHHHhcCCCEEEEE
Confidence 99854321 1 124567899999998764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.71 E-value=0.71 Score=41.37 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=62.7
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||=+|+ |.|..+..++...+.+|++++.+++-++.+++.- .. .++..+ +++. .
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g----------a~--~v~~~~-~~~~~~v~~~~ 223 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVG----------AD--IVLPLE-EGWAKAVREAT 223 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT----------CS--EEEESS-TTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC----------Cc--EEecCc-hhHHHHHHHHh
Confidence 567789999997 6789998887667889999999888888887631 11 122222 2221 1
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-+-.- ..+..+.+.|+++|.++..
T Consensus 224 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 224 GGAGVDMVVDPIGG---------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp TTSCEEEEEESCC-----------CHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEECCch---------hHHHHHHHhhcCCCEEEEE
Confidence 12369999865432 2466778899999998764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=1.4 Score=39.73 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=62.5
Q ss_pred CCCCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CC
Q 024100 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (272)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 227 (272)
+.++.+||-.| .|.|..+..++...+.+|++++.+++-++.+++ +. .. .++..+-+++. ..
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~G---------a~--~~~~~~~~~~~~~~~~~~ 228 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LG---------CD--RPINYKTEPVGTVLKQEY 228 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TT---------CS--EEEETTTSCHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-cC---------Cc--EEEecCChhHHHHHHHhc
Confidence 45678999999 568888888876677799999999988888875 31 11 12221111110 01
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+|+|+-+-.- ..++.+.+.|+++|.++..
T Consensus 229 ~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 229 PEGVDVVYESVGG---------AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp TTCEEEEEECSCT---------HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 2369998865431 3677888999999998764
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=89.45 E-value=1 Score=39.98 Aligned_cols=93 Identities=9% Similarity=0.018 Sum_probs=62.4
Q ss_pred CCCCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||=.| .|.|..+..++...+.+|++++.+++-++.+++. .. . ..+...-.++. .
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-Ga--------~---~~~~~~~~~~~~~~~~~~ 205 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL-GA--------W---ETIDYSHEDVAKRVLELT 205 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-TC--------S---EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC--------C---EEEeCCCccHHHHHHHHh
Confidence 56778999998 3578888888766788999999999988888753 11 1 12221111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+.+-.- ..+..+.+.|+++|.++..
T Consensus 206 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 206 DGKKCPVVYDGVGQ---------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp TTCCEEEEEESSCG---------GGHHHHHTTEEEEEEEEEC
T ss_pred CCCCceEEEECCCh---------HHHHHHHHHhcCCCEEEEE
Confidence 12369998865431 2566678899999998865
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=1.3 Score=39.69 Aligned_cols=94 Identities=7% Similarity=-0.043 Sum_probs=62.0
Q ss_pred CCCC--CeeeEeec--ccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----
Q 024100 155 NNQH--LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (272)
Q Consensus 155 ~~~~--~~VLDiGc--GtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---- 225 (272)
+.++ .+||-.|+ |.|..+..++...+. +|.+++.+++-++.+++.+.. . ..+...-+++.
T Consensus 156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~---------~--~~~d~~~~~~~~~~~ 224 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF---------D--AAINYKKDNVAEQLR 224 (357)
T ss_dssp CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC---------S--EEEETTTSCHHHHHH
T ss_pred CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC---------c--eEEecCchHHHHHHH
Confidence 4566 79999997 688888878766777 999999998888877764421 1 11111111110
Q ss_pred -CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 -~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+.+|+|+.+-. . ..+..+.+.|+++|.++..
T Consensus 225 ~~~~~~~d~vi~~~G-------~--~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 225 ESCPAGVDVYFDNVG-------G--NISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHCTTCEEEEEESCC-------H--HHHHHHHHTEEEEEEEEEC
T ss_pred HhcCCCCCEEEECCC-------H--HHHHHHHHHhccCcEEEEE
Confidence 01126899886543 1 4677888999999998764
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=0.92 Score=40.85 Aligned_cols=89 Identities=18% Similarity=0.088 Sum_probs=56.1
Q ss_pred CeeeEeecc-cchHH-HHHH-HhcCCc-EEEEeCCHH---HHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CC--C
Q 024100 159 LVALDCGSG-IGRIT-KNLL-IRYFNE-VDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PE--T 228 (272)
Q Consensus 159 ~~VLDiGcG-tG~~t-~~LL-a~~~~~-v~~vD~S~~---mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~--~ 228 (272)
.+||=+|+| .|..+ ..++ ...+.+ |++++.+++ -++.+++ +. . +.....-+++. .. .
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~-lG---------a---~~v~~~~~~~~~i~~~~ 240 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE-LD---------A---TYVDSRQTPVEDVPDVY 240 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH-TT---------C---EEEETTTSCGGGHHHHS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH-cC---------C---cccCCCccCHHHHHHhC
Confidence 799999976 57777 7775 445666 999998887 7788864 31 1 11111111110 00 1
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+|+|+-.-. .+ ..++.+.+.|+++|.++..
T Consensus 241 gg~Dvvid~~g-----~~---~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 241 EQMDFIYEATG-----FP---KHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp CCEEEEEECSC-----CH---HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCC-----Ch---HHHHHHHHHHhcCCEEEEE
Confidence 26899885432 11 3677888999999998764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=1 Score=40.20 Aligned_cols=93 Identities=15% Similarity=0.040 Sum_probs=62.1
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----C-
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P- 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~- 226 (272)
..++.+||=+|+|. |..+..++... +.+|+++|.+++-++.+++. . .. .++..+- ++. .
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l-G---------a~--~~i~~~~-~~~~~v~~~t 235 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV-G---------AD--AAVKSGA-GAADAIRELT 235 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT-T---------CS--EEEECST-THHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-C---------CC--EEEcCCC-cHHHHHHHHh
Confidence 45678999999874 88888786445 67999999999999988763 1 11 1222111 110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-.-. .. ..++.+.+.|+++|.++..
T Consensus 236 ~g~g~d~v~d~~G------~~--~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 236 GGQGATAVFDFVG------AQ--STIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp GGGCEEEEEESSC------CH--HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCeEEEECCC------CH--HHHHHHHHHHhcCCEEEEE
Confidence 1126899885433 12 4788889999999998864
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.01 E-value=0.86 Score=40.33 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=62.1
Q ss_pred CCCCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.+..+||-.| .|.|..+..++...+.+|.+++.+++-++.+++ +.. . ..+...-+++. .
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~g~---------~--~~~~~~~~~~~~~~~~~~ 205 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-AGA---------W--QVINYREEDLVERLKEIT 205 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTC---------S--EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC---------C--EEEECCCccHHHHHHHHh
Confidence 56778999999 568888888876678899999999988888876 311 1 11111111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+.+-. . ..++.+.+.|+++|.++..
T Consensus 206 ~~~~~D~vi~~~g------~---~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 206 GGKKVRVVYDSVG------R---DTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TTCCEEEEEECSC------G---GGHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEECCc------h---HHHHHHHHHhcCCCEEEEE
Confidence 1236999886543 1 3567788999999998764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=1.8 Score=40.25 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=62.2
Q ss_pred CeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCccee
Q 024100 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fDl 233 (272)
.+|+=||+| .|......|...+..|++||.++..++.+++. .+.++.+|..+... .-...|+
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~-------------g~~vi~GDat~~~~L~~agi~~A~~ 71 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKAEV 71 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT-------------TCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC-------------CCeEEEcCCCCHHHHHhcCCCccCE
Confidence 468888887 34444445556788999999999999888752 34577888866421 1246888
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++..- +++....+....+.+.|+..++..
T Consensus 72 viv~~~-----~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 72 LINAID-----DPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp EEECCS-----SHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEECCC-----ChHHHHHHHHHHHHhCCCCeEEEE
Confidence 876543 344445666677778888777653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.82 E-value=1 Score=40.78 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=60.7
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-C-CCCC-----
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L-QDFT----- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~-~~~~----- 225 (272)
+.++.+||-+|+| .|..+..++...+. .|++++.+++-++.+++ +. .. .++... . +++.
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~-lG---------a~--~vi~~~~~~~~~~~~~~~ 257 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-FG---------AT--DFVNPNDHSEPISQVLSK 257 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TT---------CC--EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-hC---------Cc--eEEeccccchhHHHHHHH
Confidence 5677899999987 47888877655566 79999999998888875 31 11 111111 0 1110
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
...+.+|+|+-.-.- . ..+..+.+.|+++ |.++..
T Consensus 258 ~~~~g~D~vid~~g~------~--~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 258 MTNGGVDFSLECVGN------V--GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHTSCBSEEEECSCC------H--HHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCCCEEEECCCC------H--HHHHHHHHHhhcCCcEEEEE
Confidence 011368998854321 1 4678888999999 998764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=1.2 Score=40.31 Aligned_cols=94 Identities=11% Similarity=-0.087 Sum_probs=60.8
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-C-CCCC-----
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L-QDFT----- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~-~~~~----- 225 (272)
+.++.+||=+|+| .|..+..++...+. .|++++.+++-++.+++ +. .. .++... . +++.
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lG---------a~--~vi~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-LG---------AT--ECLNPKDYDKPIYEVICE 256 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-TT---------CS--EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cC---------Cc--EEEecccccchHHHHHHH
Confidence 5677899999987 47888877645566 79999999988888875 31 11 111111 0 1110
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
...+.+|+|+-.-.- + ..+..+.+.|+++ |.++..
T Consensus 257 ~t~gg~Dvvid~~g~-----~---~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 257 KTNGGVDYAVECAGR-----I---ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HTTSCBSEEEECSCC-----H---HHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCCCEEEECCCC-----H---HHHHHHHHHHhcCCCEEEEE
Confidence 012369998854321 1 4678888999999 998754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=1.2 Score=40.25 Aligned_cols=94 Identities=12% Similarity=-0.028 Sum_probs=60.8
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-C-CCCC-----
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L-QDFT----- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~-~~~~----- 225 (272)
+.++.+||-+|+|. |..+..++...+. .|++++.|++-++.+++. .. . .++... . +++.
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga---------~--~vi~~~~~~~~~~~~v~~ 255 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GA---------T--ECINPQDFSKPIQEVLIE 255 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TC---------S--EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC---------c--eEeccccccccHHHHHHH
Confidence 56778999999874 7788877655566 799999999888888753 11 1 111111 0 1110
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
...+.+|+|+-.-.- . ..+..+.+.|+++ |.++..
T Consensus 256 ~~~~g~D~vid~~g~------~--~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 256 MTDGGVDYSFECIGN------V--KVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HTTSCBSEEEECSCC------H--HHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCCCEEEECCCc------H--HHHHHHHHhhccCCcEEEEE
Confidence 011369998854321 1 4678888999999 998754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=88.37 E-value=1.4 Score=39.86 Aligned_cols=94 Identities=11% Similarity=-0.069 Sum_probs=60.4
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC--CCCC-----
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL--QDFT----- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~--~~~~----- 225 (272)
+.++.+||-+|+|. |..+..++...+. .|++++.+++-++.+++ +. .. .++...- +++.
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~-lG---------a~--~vi~~~~~~~~~~~~~~~ 256 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-VG---------AT--ECVNPQDYKKPIQEVLTE 256 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TT---------CS--EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hC---------Cc--eEecccccchhHHHHHHH
Confidence 56778999999874 7888877655666 79999999988888864 31 11 1111110 1110
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
...+.+|+|+-.-.- + ..+..+.+.|+++ |.++..
T Consensus 257 ~~~~g~D~vid~~g~-----~---~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 257 MSNGGVDFSFEVIGR-----L---DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HTTSCBSEEEECSCC-----H---HHHHHHHHHBCTTTCEEEEC
T ss_pred HhCCCCcEEEECCCC-----H---HHHHHHHHHhhcCCcEEEEe
Confidence 012369998854321 1 4677888999999 998754
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.37 E-value=1.1 Score=40.70 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=61.0
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC------C----C
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP------L----Q 222 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d------~----~ 222 (272)
+.++.+||-+|+| .|..+..++...+ .+|++++.+++-++.+++ +. .. .++... + .
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~-lG---------a~--~vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE-IG---------AD--LTLNRRETSVEERRKAIM 260 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH-TT---------CS--EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH-cC---------Cc--EEEeccccCcchHHHHHH
Confidence 4567899999976 5788887765556 599999999998888875 31 11 122211 1 0
Q ss_pred CCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 223 DFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 223 ~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.. ....+|+|+-+-.- + ..+..+.+.|+++|.++..
T Consensus 261 ~~~-~g~g~Dvvid~~g~-----~---~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 261 DIT-HGRGADFILEATGD-----S---RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHT-TTSCEEEEEECSSC-----T---THHHHHHHHEEEEEEEEEC
T ss_pred HHh-CCCCCcEEEECCCC-----H---HHHHHHHHHHhcCCEEEEE
Confidence 111 11269998854331 2 3677788999999998764
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=88.14 E-value=1.7 Score=39.06 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCCCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||-.| .|.|..+..++...+.+|.+++.+++-++.+++ +.. . ..+..+-.++. .
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~g~----------~-~~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK-LGA----------A-AGFNYKKEDFSEATLKFT 227 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTC----------S-EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC----------c-EEEecCChHHHHHHHHHh
Confidence 56778999998 468888888876678899999999988888854 310 1 11111111110 1
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+.+-.- ..+..+.+.|+++|.++..
T Consensus 228 ~~~~~d~vi~~~G~---------~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 228 KGAGVNLILDCIGG---------SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TTSCEEEEEESSCG---------GGHHHHHHHEEEEEEEEEC
T ss_pred cCCCceEEEECCCc---------hHHHHHHHhccCCCEEEEE
Confidence 12369998865432 1356667899999998764
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.10 E-value=0.59 Score=41.46 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=58.7
Q ss_pred CCCCC-eeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC---CCCCCCCC
Q 024100 155 NNQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPET 228 (272)
Q Consensus 155 ~~~~~-~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d---~~~~~~~~ 228 (272)
+.+.. +||=.|+ |.|..+..++...+.+|.+++.+++-++.+++ +.. ...++....+ +... ..
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-lGa--------~~~i~~~~~~~~~~~~~--~~ 214 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-LGA--------KEVLAREDVMAERIRPL--DK 214 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-TTC--------SEEEECC---------C--CS
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-cCC--------cEEEecCCcHHHHHHHh--cC
Confidence 34443 7999997 68888888876667899999988877888865 321 1111111111 1112 22
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+|+|+-+-.- ..+..+.+.|+++|.++..
T Consensus 215 ~~~d~vid~~g~---------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 215 QRWAAAVDPVGG---------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp CCEEEEEECSTT---------TTHHHHHHTEEEEEEEEEC
T ss_pred CcccEEEECCcH---------HHHHHHHHhhccCCEEEEE
Confidence 469998854331 1356677899999998764
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=1.4 Score=39.72 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCCeeeEeecccchHHHHHH---HhcCC--cE--EEEeC------------CHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 157 QHLVALDCGSGIGRITKNLL---IRYFN--EV--DLLEP------------VSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LL---a~~~~--~v--~~vD~------------S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
+.-+|||+|=|||......+ .+..+ ++ +.+|. .....+...+..... ....-..++.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~----~~~~v~L~l~ 171 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY----EGERLSLKVL 171 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE----ECSSEEEEEE
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc----cCCcEEEEEE
Confidence 34589999999998654322 12232 33 33442 122222222222111 0112345677
Q ss_pred EeCCCCC-C-CCCCcceeeEechhhhhcChhhH--HHHHHHHHHhcccCcEEE
Q 024100 218 CVPLQDF-T-PETGRYDVIWVQWCIGHLTDDDF--VSFFKRAKENIARSGTFL 266 (272)
Q Consensus 218 ~~d~~~~-~-~~~~~fDlIvs~~vl~hl~d~~~--~~~l~~~~r~LkpgG~li 266 (272)
.+|+.+. + .....||+|+.-. |---.+|++ ..+|+.++++++|||.+.
T Consensus 172 ~GDa~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 172 LGDARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp ESCHHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred echHHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 8887543 2 2334799998642 111112332 389999999999999885
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.80 E-value=2.8 Score=38.41 Aligned_cols=45 Identities=24% Similarity=0.128 Sum_probs=36.0
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHh
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARES 199 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~ 199 (272)
+.++.+||=+|+| .|..+..++...+. .|++++.++.-++.+++.
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l 257 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL 257 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 5677899999986 47788877655666 899999999999988764
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.72 E-value=4.3 Score=31.52 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=54.7
Q ss_pred CeeeEeecccchHHHHH---HHhcCCcEEEEeCC-HHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCc
Q 024100 159 LVALDCGSGIGRITKNL---LIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGR 230 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~L---La~~~~~v~~vD~S-~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~ 230 (272)
.+|+=+|+| +++..+ |.+.+..|+++|.+ ++-.+...+... ..+.++.+|..+... .-..
T Consensus 4 ~~vlI~G~G--~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~----------~~~~~i~gd~~~~~~l~~a~i~~ 71 (153)
T 1id1_A 4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----------DNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----------TTCEEEESCTTSHHHHHHHTTTT
T ss_pred CcEEEECCC--HHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc----------CCCeEEEcCCCCHHHHHHcChhh
Confidence 367777764 444443 34557899999987 454444443331 246788888754321 1236
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
.|+|++..- +++....+....+.+.|...++.
T Consensus 72 ad~vi~~~~-----~d~~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 72 CRAILALSD-----NDADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp CSEEEECSS-----CHHHHHHHHHHHHHHTSSSCEEE
T ss_pred CCEEEEecC-----ChHHHHHHHHHHHHHCCCCEEEE
Confidence 888886543 23444566666677777766654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=87.55 E-value=0.27 Score=44.95 Aligned_cols=99 Identities=7% Similarity=0.023 Sum_probs=57.1
Q ss_pred CCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 158 ~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
+.+|+=+|+| .|..+..++...+.+|+++|.+++-++.+++.... .+.....+.+++...-..+|+|+.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~DvVI~ 236 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLLIG 236 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc----------eeEeeeCCHHHHHHHHcCCCEEEE
Confidence 4799999986 56656656556677999999999888877765421 122221111111100025899986
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.-....-..+. -+.+.+.+.++|||.+++.
T Consensus 237 ~~~~~~~~~~~--li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 237 AVLVPGRRAPI--LVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp CCCCTTSSCCC--CBCHHHHTTSCTTCEEEET
T ss_pred CCCcCCCCCCe--ecCHHHHhhCCCCCEEEEE
Confidence 44332211111 1134456778999998874
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=87.42 E-value=0.77 Score=41.07 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=58.3
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 227 (272)
+ ++.+||-+|+| .|..+..++...+. +|++++.+++-++.+++. .. .++...-+++. ..
T Consensus 163 ~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~------------~v~~~~~~~~~~~~~~~~ 228 (343)
T 2dq4_A 163 V-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD------------RLVNPLEEDLLEVVRRVT 228 (343)
T ss_dssp C-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS------------EEECTTTSCHHHHHHHHH
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH------------hccCcCccCHHHHHHHhc
Confidence 5 77899999986 47777777655676 899999998776666442 10 11111111110 00
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+|+|+-.-.- + ..++...+.|+++|.++..
T Consensus 229 ~~g~D~vid~~g~-----~---~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 229 GSGVEVLLEFSGN-----E---AAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SSCEEEEEECSCC-----H---HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCCC-----H---HHHHHHHHHHhcCCEEEEE
Confidence 2369998854331 1 4677888999999998764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=87.22 E-value=3 Score=38.88 Aligned_cols=94 Identities=11% Similarity=0.055 Sum_probs=62.1
Q ss_pred cCCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------
Q 024100 154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (272)
Q Consensus 154 ~~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------ 225 (272)
.+.++.+||=+|+ |.|..+..++...+.+|++++.++.-++.+++. .. . .++...-.++.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l-Ga--------~---~vi~~~~~d~~~~~~~~ 292 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM-GA--------E---AIIDRNAEGYRFWKDEN 292 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-TC--------C---EEEETTTTTCCSEEETT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh-CC--------c---EEEecCcCccccccccc
Confidence 3567789999997 578888888766788999999999888888653 11 1 11111111110
Q ss_pred -----------------CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 -----------------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 -----------------~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.....+|+|+-+-.- ..+..+.+.|++||.++..
T Consensus 293 ~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~---------~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR---------ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp EECHHHHHHHHHHHHHHHTSCCEEEEEECSCH---------HHHHHHHHHEEEEEEEEES
T ss_pred ccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc---------hhHHHHHHHhhCCcEEEEE
Confidence 011379988854321 3567778899999998864
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=0.69 Score=41.05 Aligned_cols=96 Identities=14% Similarity=0.045 Sum_probs=59.9
Q ss_pred CCCCC-eeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCc
Q 024100 155 NNQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGR 230 (272)
Q Consensus 155 ~~~~~-~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~ 230 (272)
+.+.. +||=.|| |.|..+..++...+.+|++++.+++-++.+++ +.. ...++....+.+.. ....+.
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-lGa--------~~v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ-LGA--------SEVISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH-HTC--------SEEEEHHHHCSSCCCSSCCCC
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC--------cEEEECCCchHHHHHHhhcCC
Confidence 34443 8999997 58888888866667899999988777788765 321 11111111111111 112246
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+|+-+-. . ..+..+.+.|+++|.++..
T Consensus 218 ~d~vid~~g-----~----~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 218 WQGAVDPVG-----G----KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEEEEESCC-----T----HHHHHHHTTEEEEEEEEEC
T ss_pred ccEEEECCc-----H----HHHHHHHHhhcCCCEEEEE
Confidence 999885433 1 2567788899999998754
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.01 E-value=4.7 Score=34.25 Aligned_cols=82 Identities=10% Similarity=-0.026 Sum_probs=51.2
Q ss_pred CeeeEeecccchHHHHHH---HhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 159 LVALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LL---a~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+||=.|| |.++..++ .+.+.+|.+++-++.-.+.... ..++++.+|+.++. -..+|+|+
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------------~~~~~~~~D~~d~~--~~~~d~vi 68 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------------SGAEPLLWPGEEPS--LDGVTHLL 68 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------------TTEEEEESSSSCCC--CTTCCEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------------CCCeEEEecccccc--cCCCCEEE
Confidence 47999995 76666554 2347799999877654333221 25789999998876 35799999
Q ss_pred echhhhhcChhhHHHHHHHHHH
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKE 257 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r 257 (272)
.........++....+++.+.+
T Consensus 69 ~~a~~~~~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 69 ISTAPDSGGDPVLAALGDQIAA 90 (286)
T ss_dssp ECCCCBTTBCHHHHHHHHHHHH
T ss_pred ECCCccccccHHHHHHHHHHHh
Confidence 7655433323323344444444
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=86.89 E-value=1.3 Score=39.86 Aligned_cols=88 Identities=23% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCH---HHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCC
Q 024100 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETG 229 (272)
Q Consensus 158 ~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~---~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~ 229 (272)
+.+||-+|+| .|..+..++...+.+|++++.++ +-++.+++. . .+.+..+ ++.. ..+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~-g------------a~~v~~~--~~~~~~~~~~~ 245 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET-K------------TNYYNSS--NGYDKLKDSVG 245 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH-T------------CEEEECT--TCSHHHHHHHC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh-C------------CceechH--HHHHHHHHhCC
Confidence 7799999975 46777777655677999999887 666777643 1 1111111 1110 013
Q ss_pred cceeeEechhhhhcChhhHHHHH-HHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFF-KRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l-~~~~r~LkpgG~liv~ 268 (272)
.+|+|+.+-.. + ..+ +.+.+.|+++|.++..
T Consensus 246 ~~d~vid~~g~-----~---~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 246 KFDVIIDATGA-----D---VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp CEEEEEECCCC-----C---THHHHHHGGGEEEEEEEEEC
T ss_pred CCCEEEECCCC-----h---HHHHHHHHHHHhcCCEEEEE
Confidence 69998865432 2 245 7788999999998764
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=86.53 E-value=0.32 Score=43.96 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-CC--CCCCCc
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DF--TPETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~~--~~~~~~ 230 (272)
+.++.+||-+|+| .|..+..++...+.+|++++.|+.-++.+++ +.. . .++...-+ ++ ... +.
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-lGa---------~--~v~~~~~~~~~~~~~~-~~ 243 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MGA---------D--HYIATLEEGDWGEKYF-DT 243 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTC---------S--EEEEGGGTSCHHHHSC-SC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cCC---------C--EEEcCcCchHHHHHhh-cC
Confidence 5677899999986 4788887765567789999998888888876 321 1 12221111 11 011 36
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+|+-.-.-. ++ ..++.+.+.|++||.++..
T Consensus 244 ~D~vid~~g~~---~~---~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 244 FDLIVVCASSL---TD---IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEEEECCSCS---TT---CCTTTGGGGEEEEEEEEEC
T ss_pred CCEEEECCCCC---cH---HHHHHHHHHhcCCCEEEEe
Confidence 99998543310 01 2344567889999998754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=1.7 Score=39.37 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=60.4
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-C-CCCC-----
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L-QDFT----- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~-~~~~----- 225 (272)
+.++.+||=+|+| .|..+..++...+. +|++++.+++-++.+++ +. .. ..+... . +++.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lG---------a~--~vi~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-LG---------AT--DCLNPRELDKPVQDVITE 260 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TT---------CS--EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hC---------Cc--EEEccccccchHHHHHHH
Confidence 5677899999987 47888877655566 79999999988888865 31 11 111111 0 1110
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
...+.+|+|+-.-.- . ..+..+.+.|+++ |.++..
T Consensus 261 ~~~~g~Dvvid~~G~------~--~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 261 LTAGGVDYSLDCAGT------A--QTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHTSCBSEEEESSCC------H--HHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCccEEEECCCC------H--HHHHHHHHHhhcCCCEEEEE
Confidence 011368998854321 2 4678888999999 998753
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=86.43 E-value=0.27 Score=44.45 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=58.4
Q ss_pred CC-CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-CCCCCCCCCcc
Q 024100 155 NN-QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRY 231 (272)
Q Consensus 155 ~~-~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~f 231 (272)
.. ++.+||=+|+| .|..+..++...+.+|++++.+++-++.+++.+.. ...++....+ +.+. . +.+
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa--------~~vi~~~~~~~~~~~--~-~g~ 245 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGA--------DDYVIGSDQAKMSEL--A-DSL 245 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCC--------SCEEETTCHHHHHHS--T-TTE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCC--------ceeeccccHHHHHHh--c-CCC
Confidence 44 67799999976 57777777655677999999998888887755421 1111110000 1111 1 369
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+-.-.- + ..+....+.|+++|.++..
T Consensus 246 D~vid~~g~-----~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 246 DYVIDTVPV-----H---HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEEECCCS-----C---CCSHHHHTTEEEEEEEEEC
T ss_pred CEEEECCCC-----h---HHHHHHHHHhccCCEEEEe
Confidence 998854321 1 1345567899999998764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.28 E-value=1.6 Score=39.24 Aligned_cols=93 Identities=20% Similarity=0.176 Sum_probs=62.0
Q ss_pred CCCCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CC
Q 024100 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (272)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 227 (272)
+.++.+||=.| .|.|..+..++...+.+|++++.+++-++.+++.- .. ..+...-+++. ..
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lG----------a~--~~~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLG----------AK--RGINYRSEDFAAVIKAET 232 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT----------CS--EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC----------CC--EEEeCCchHHHHHHHHHh
Confidence 56778999995 45788888887667889999999999888887631 11 12221111110 00
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+.+|+|+.+-.- ..+..+.+.|+++|.++..
T Consensus 233 ~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 233 GQGVDIILDMIGA---------AYFERNIASLAKDGCLSII 264 (353)
T ss_dssp SSCEEEEEESCCG---------GGHHHHHHTEEEEEEEEEC
T ss_pred CCCceEEEECCCH---------HHHHHHHHHhccCCEEEEE
Confidence 2369998865431 2466678899999998764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.12 E-value=0.4 Score=43.86 Aligned_cols=100 Identities=7% Similarity=0.035 Sum_probs=55.5
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|+=+|+| .|......+...+.+|.++|.++.-++.+.+.+. ..+.....+..++.-.-..+|+|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g----------~~~~~~~~~~~~l~~~~~~~DvVi 234 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFG----------GRVITLTATEANIKKSVQHADLLI 234 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT----------TSEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC----------ceEEEecCCHHHHHHHHhCCCEEE
Confidence 34789999986 4555555555667799999999987777765442 111111111111110012589988
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+-.......+. -+.+++.+.+++||.+++.
T Consensus 235 ~~~g~~~~~~~~--li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 235 GAVLVPGAKAPK--LVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp ECCC-------C--CSCHHHHTTSCTTCEEEEC
T ss_pred ECCCCCccccch--hHHHHHHHhhcCCCEEEEE
Confidence 654331100011 1245566778999998864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=86.11 E-value=0.39 Score=42.14 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=59.8
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-CCCCCCCCcc
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~f 231 (272)
+.++.+||-+|+ |.|..+..++...+.+|++++.+++-++.+++ +. .. ..+...- .++...-+.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~g---------a~--~~~~~~~~~~~~~~~~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-LG---------AE--EAATYAEVPERAKAWGGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-TT---------CS--EEEEGGGHHHHHHHTTSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cC---------CC--EEEECCcchhHHHHhcCc
Confidence 356779999997 57888888876677799999998888888765 31 11 1121110 1110000469
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+. -. . ..++.+.+.|+++|.++..
T Consensus 191 d~vid-~g--~-------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 191 DLVLE-VR--G-------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EEEEE-CS--C-------TTHHHHHTTEEEEEEEEEC
T ss_pred eEEEE-CC--H-------HHHHHHHHhhccCCEEEEE
Confidence 99886 32 1 2567788899999988754
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=86.05 E-value=0.42 Score=43.37 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=57.5
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeC-CCCCCCCCCcceee
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fDlI 234 (272)
++.+||=+|+| .|..+..++...+.+|++++.++.-++.+.+.+.. . .++... .+.+.-..+.+|+|
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa---------~--~v~~~~~~~~~~~~~~~~D~v 255 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA---------D--SFLVSRDQEQMQAAAGTLDGI 255 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC---------S--EEEETTCHHHHHHTTTCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC---------c--eEEeccCHHHHHHhhCCCCEE
Confidence 67789999976 47777777655677999999998888877755421 1 111111 00010001369998
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..-.. . ..++.+.+.|+++|.++..
T Consensus 256 id~~g~-----~---~~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 256 IDTVSA-----V---HPLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp EECCSS-----C---CCSHHHHHHEEEEEEEEEC
T ss_pred EECCCc-----H---HHHHHHHHHHhcCCEEEEE
Confidence 854331 1 1344566789999998764
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=85.93 E-value=2 Score=39.81 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=62.8
Q ss_pred cCCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------
Q 024100 154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (272)
Q Consensus 154 ~~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------ 225 (272)
.+.++.+||=.|+ |.|..+..++...+.+|++++.+++-++.+++ +. ....++....++.+..
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~-lG--------a~~~i~~~~~~~~~~~~~~~~~ 287 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA-LG--------CDLVINRAELGITDDIADDPRR 287 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TT--------CCCEEEHHHHTCCTTGGGCHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cC--------CCEEEecccccccccccccccc
Confidence 3567889999996 57888888876678899999999998888865 31 1112222122221110
Q ss_pred --------------CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 --------------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 --------------~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.....+|+|+-+-.- ..+....+.|++||.++..
T Consensus 288 ~~~~~~~~~~~v~~~~g~g~Dvvid~~G~---------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 288 VVETGRKLAKLVVEKAGREPDIVFEHTGR---------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSEEEECSCH---------HHHHHHHHHSCTTCEEEES
T ss_pred cchhhhHHHHHHHHHhCCCceEEEECCCc---------hHHHHHHHHHhcCCEEEEE
Confidence 002368998864331 2466777899999998865
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=85.69 E-value=0.39 Score=44.20 Aligned_cols=100 Identities=8% Similarity=-0.011 Sum_probs=56.3
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|+=+|+| .|......+...+.+|.++|.++.-++.+++.+.. .+.....+..++...-..+|+|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~----------~~~~~~~~~~~l~~~l~~aDvVi 236 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG----------RIHTRYSSAYELEGAVKRADLVI 236 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----------SSEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC----------eeEeccCCHHHHHHHHcCCCEEE
Confidence 45789999986 45555555555667999999999888877765421 11111111111100012589988
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..-..-....+. -+.+++.+.++|||.+++.
T Consensus 237 ~~~~~p~~~t~~--li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 237 GAVLVPGAKAPK--LVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp ECCCCTTSCCCC--CBCHHHHTTSCTTCEEEEG
T ss_pred ECCCcCCCCCcc--eecHHHHhcCCCCcEEEEE
Confidence 643211101111 1234566778999998865
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=85.58 E-value=1.6 Score=34.27 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=52.3
Q ss_pred CCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC---C-CCCc
Q 024100 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---P-ETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~---~-~~~~ 230 (272)
.+..+|+=+|||. |......|...+.+|+++|.++.-++.+++ .....++.+|..+.. . .-..
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~------------~~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS------------EFSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT------------TCCSEEEESCTTSHHHHHTTTGGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh------------cCCCcEEEecCCCHHHHHHcCccc
Confidence 3456899999873 544444445667799999988764432221 112345556653311 0 1136
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+|+..-- ++.....+..+.+.+.+...++.
T Consensus 85 ad~Vi~~~~-----~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 85 ADMVFAFTN-----DDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp CSEEEECSS-----CHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCEEEEEeC-----CcHHHHHHHHHHHHHCCCCeEEE
Confidence 888886533 23333444455555555555553
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=85.52 E-value=1.9 Score=38.18 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=61.6
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||-.|+ |.|..+..++...+.+|.+++.+++-++.+++ +. .. ..+..+-+++. .
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g---------~~--~~~d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-LG---------CH--HTINYSTQDFAEVVREIT 210 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HT---------CS--EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---------CC--EEEECCCHHHHHHHHHHh
Confidence 567789999995 78888888876778899999999988888865 31 11 11111111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+.+-.- ..++.+.+.|+++|.++..
T Consensus 211 ~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 211 GGKGVDVVYDSIGK---------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp TTCCEEEEEECSCT---------TTHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECCcH---------HHHHHHHHhhccCCEEEEE
Confidence 12369998865431 3567778899999998764
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=85.41 E-value=2.8 Score=37.45 Aligned_cols=90 Identities=11% Similarity=0.119 Sum_probs=60.7
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||=+|+ |.|..+..++...+.+|.++ .+++-++.+++. . . +.+. +-+++. .
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l-G---------a---~~i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL-G---------A---TPID-ASREPEDYAAEHT 212 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH-T---------S---EEEE-TTSCHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc-C---------C---CEec-cCCCHHHHHHHHh
Confidence 567889999993 57888888876678899999 888888888653 1 1 1122 222221 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-+-. . ..+..+.+.|+++|.++..
T Consensus 213 ~~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 213 AGQGFDLVYDTLG-------G--PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TTSCEEEEEESSC-------T--HHHHHHHHHEEEEEEEEES
T ss_pred cCCCceEEEECCC-------c--HHHHHHHHHHhcCCeEEEE
Confidence 1236999885432 1 3677788899999998864
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.81 E-value=5.7 Score=32.75 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=55.1
Q ss_pred eeeEeecccchHHHHH---HHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcce
Q 024100 160 VALDCGSGIGRITKNL---LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~L---La~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD 232 (272)
+|+=+|+ |.++..+ |.+.+..|+++|.+++-++...+.. .+.++.+|..+... .-..+|
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~------------~~~~i~gd~~~~~~l~~a~i~~ad 67 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL------------KATIIHGDGSHKEILRDAEVSKND 67 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS------------SSEEEESCTTSHHHHHHHTCCTTC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc------------CCeEEEcCCCCHHHHHhcCcccCC
Confidence 4666676 4444443 2356789999999998877655432 35678888765321 123689
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|++..- +++...++....+.+.|...++.
T Consensus 68 ~vi~~~~-----~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 68 VVVILTP-----RDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp EEEECCS-----CHHHHHHHHHHHHHTSCCCEEEE
T ss_pred EEEEecC-----CcHHHHHHHHHHHHHcCCCeEEE
Confidence 8886532 34444566666666667666654
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=84.79 E-value=0.93 Score=43.32 Aligned_cols=60 Identities=22% Similarity=0.135 Sum_probs=44.9
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~ 225 (272)
...+++|+=||.|.++..| .+. +.-|.++|.++..++.-+.++.. .+...+++.|+.++.
T Consensus 87 ~~~~viDLFaG~GGlslG~-~~aG~~~v~avE~d~~A~~ty~~N~~~--------~p~~~~~~~DI~~i~ 147 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGF-ESIGGQCVFTSEWNKHAVRTYKANHYC--------DPATHHFNEDIRDIT 147 (482)
T ss_dssp CSEEEEEESCTTSHHHHHH-HTTTEEEEEEECCCHHHHHHHHHHSCC--------CTTTCEEESCTHHHH
T ss_pred ccceEEEecCCccHHHHHH-HHCCCEEEEEEeCCHHHHHHHHHhccc--------CCCcceeccchhhhh
Confidence 3468999999999999988 455 44578899999999888887631 234456778876653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=84.60 E-value=6.8 Score=34.76 Aligned_cols=91 Identities=14% Similarity=0.004 Sum_probs=58.8
Q ss_pred CeeeEeecc-cc-hHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CCCCCCccee
Q 024100 159 LVALDCGSG-IG-RITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDV 233 (272)
Q Consensus 159 ~~VLDiGcG-tG-~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fDl 233 (272)
.+|.=||+| .| .++..| .+.+. +|.++|.+++-++.+.+.- .+.-...+..+ . -...|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~~~a~~~G------------~~~~~~~~~~~~~---~~~aDv 97 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISKAVDLG------------IIDEGTTSIAKVE---DFSPDF 97 (314)
T ss_dssp SEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHHHHTT------------SCSEEESCTTGGG---GGCCSE
T ss_pred CEEEEEeeCHHHHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHCC------------CcchhcCCHHHHh---hccCCE
Confidence 578888987 33 344444 45666 8999999998888776421 11112334433 1 135899
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+..-- ......+++++...++||..+++.-+
T Consensus 98 Vilavp-----~~~~~~vl~~l~~~l~~~~iv~d~~S 129 (314)
T 3ggo_A 98 VMLSSP-----VRTFREIAKKLSYILSEDATVTDQGS 129 (314)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHSCTTCEEEECCS
T ss_pred EEEeCC-----HHHHHHHHHHHhhccCCCcEEEECCC
Confidence 886543 33455788999999999998887543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=84.52 E-value=1.2 Score=41.95 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=35.5
Q ss_pred CCeeeEeecccchHHHHHHHhc------CCcEEEEeCCHHHHHHHHHhcc
Q 024100 158 HLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~------~~~v~~vD~S~~mld~A~~~l~ 201 (272)
+..|+|+|+|.|.+...+|.-. ..++.+||+|+.+.+.-++.+.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 3589999999999999887321 1379999999999888887774
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=84.39 E-value=3.3 Score=36.90 Aligned_cols=91 Identities=11% Similarity=0.152 Sum_probs=59.7
Q ss_pred CCCeeeEee-cc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-----CCCCC
Q 024100 157 QHLVALDCG-SG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TPETG 229 (272)
Q Consensus 157 ~~~~VLDiG-cG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~ 229 (272)
++.+||=+| +| .|..+..++...+.+|++++.+++-++.+++. .. . .++..+ +++ .....
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l-Ga--------~---~vi~~~-~~~~~~~~~~~~~ 216 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM-GA--------D---IVLNHK-ESLLNQFKTQGIE 216 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH-TC--------S---EEECTT-SCHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CC--------c---EEEECC-ccHHHHHHHhCCC
Confidence 677899884 44 68888888666678999999999988888773 21 1 111111 111 01123
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|+|+-+-. .. ..+..+.+.|+++|.++..
T Consensus 217 g~Dvv~d~~g------~~--~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 217 LVDYVFCTFN------TD--MYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CEEEEEESSC------HH--HHHHHHHHHEEEEEEEEES
T ss_pred CccEEEECCC------ch--HHHHHHHHHhccCCEEEEE
Confidence 6999886432 12 4678888999999998653
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=83.87 E-value=3.4 Score=35.00 Aligned_cols=107 Identities=10% Similarity=-0.005 Sum_probs=62.9
Q ss_pred CCeeeEeecc----cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC------
Q 024100 158 HLVALDCGSG----IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------ 227 (272)
Q Consensus 158 ~~~VLDiGcG----tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~------ 227 (272)
+.++|=.|++ .|.-....|++.+.+|.+++.++...+...+..... ...++.++.+|+.+...-
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~~~~ 80 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTL------DRNDSIILPCDVTNDAEIETCFAS 80 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTS------SSCCCEEEECCCSSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhc------CCCCceEEeCCCCCHHHHHHHHHH
Confidence 4478888855 565333344677889999987765555554443221 123688999999765310
Q ss_pred ----CCcceeeEechhhh----------hcChhhHHH-----------HHHHHHHhcccCcEEEEecC
Q 024100 228 ----TGRYDVIWVQWCIG----------HLTDDDFVS-----------FFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 228 ----~~~fDlIvs~~vl~----------hl~d~~~~~-----------~l~~~~r~LkpgG~liv~E~ 270 (272)
-+..|+++.+-.+. ..+.+++.. +++.+...++++|.||..-|
T Consensus 81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 02678888654322 233333332 34455566677888876544
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=83.40 E-value=3.5 Score=35.02 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCeeeEeeccc--chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC--------
Q 024100 158 HLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------- 227 (272)
Q Consensus 158 ~~~VLDiGcGt--G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~-------- 227 (272)
+.++|=.|++. |.-....|++.+.+|.+++.+++-++...+.+ ..++.++.+|+.+...-
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF----------GPRVHALRSDIADLNEIAVLGAAAG 77 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHHHHHHHHH
Confidence 44778778654 33333333577889999999988777766654 23678899998764310
Q ss_pred --CCcceeeEechhh------hhcChhhHHHH-----------HHHHHHhcccCcEEEEecC
Q 024100 228 --TGRYDVIWVQWCI------GHLTDDDFVSF-----------FKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 228 --~~~fDlIvs~~vl------~hl~d~~~~~~-----------l~~~~r~LkpgG~liv~E~ 270 (272)
-+..|+++.+-.+ ..++.+++... .+.+...++++|.|+..-|
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 1368998865432 23344443332 2334455667888876544
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.40 E-value=5.6 Score=35.78 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=60.3
Q ss_pred CCCeeeEee-c-ccchHHHHHHHh-cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE---EeCCCCCCCCCCc
Q 024100 157 QHLVALDCG-S-GIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF---CVPLQDFTPETGR 230 (272)
Q Consensus 157 ~~~~VLDiG-c-GtG~~t~~LLa~-~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~---~~d~~~~~~~~~~ 230 (272)
++.+||=+| + |.|..+..++.. .+.+|++++.+++-++.+++ +.. ...++.. ...+.+. ..+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~-lGa--------d~vi~~~~~~~~~v~~~--~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS-LGA--------HHVIDHSKPLAAEVAAL--GLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-TTC--------SEEECTTSCHHHHHHTT--CSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-cCC--------CEEEeCCCCHHHHHHHh--cCCC
Confidence 567899998 4 468888888544 37799999999988888876 321 1111100 0001111 2247
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+|+-+-. .. ..+..+.+.|+++|.++..
T Consensus 240 ~Dvvid~~g------~~--~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFSTTH------TD--KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEECSC------HH--HHHHHHHHHSCTTCEEEEC
T ss_pred ceEEEECCC------ch--hhHHHHHHHhcCCCEEEEE
Confidence 999886433 12 4778888999999999865
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.11 E-value=3.5 Score=35.24 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=62.4
Q ss_pred CCeeeEeecc--cchHHHHHHHhcCCcEEEEeCC------------HHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC
Q 024100 158 HLVALDCGSG--IGRITKNLLIRYFNEVDLLEPV------------SHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (272)
Q Consensus 158 ~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S------------~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~ 223 (272)
+.+||=.|++ .|......|++.+.+|.+++.+ ..-++.+...+.. ...++.++.+|+.+
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~~ 82 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK-------TGRKAYTAEVDVRD 82 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH-------TTSCEEEEECCTTC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHh-------cCCceEEEEccCCC
Confidence 4478878875 4443333335778899999876 6666665554432 23578889999876
Q ss_pred CCCC----------CCcceeeEechhhhh----cChhhHHHH-----------HHHHHHhcccCcEEEEecC
Q 024100 224 FTPE----------TGRYDVIWVQWCIGH----LTDDDFVSF-----------FKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 224 ~~~~----------~~~fDlIvs~~vl~h----l~d~~~~~~-----------l~~~~r~LkpgG~liv~E~ 270 (272)
...- -+..|++|.+-.+.. ++.+++... ++.+...++.+|.||..-|
T Consensus 83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 4210 026899886644322 333333332 2344455667888776543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=83.11 E-value=0.66 Score=41.64 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=38.0
Q ss_pred CceEEEEeCCCC-CC-CCCCcceeeEechhhhhcC------------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 212 KATNFFCVPLQD-FT-PETGRYDVIWVQWCIGHLT------------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 212 ~~v~~~~~d~~~-~~-~~~~~fDlIvs~~vl~hl~------------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....++++|..+ +. .++++||+|++.--..... ...+...|++++++|+|||.+++.
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 456788888754 22 3456899999863321110 013557899999999999988764
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=82.78 E-value=12 Score=33.67 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=69.2
Q ss_pred CCeeeEeecccchHHHHHHHhcCCcEEEEeCC-HHHHHHHHHhccccC-------------CC-CC---CCCCceEEEEe
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPEN-------------HM-AP---DMHKATNFFCV 219 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S-~~mld~A~~~l~~~~-------------~~-~~---~~~~~v~~~~~ 219 (272)
...|+-+|||.=.....|.......+..+|++ |+.++.=++.+.... .. .. -...+..++.+
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~ 170 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGA 170 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEEC
T ss_pred CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEcc
Confidence 45899999998877777753323455565533 333433222222100 00 00 01357789999
Q ss_pred CCCCCC----------CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 220 PLQDFT----------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 220 d~~~~~----------~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+.+.. +.....=++++-.++.|++.++...+|+.+.+.. |+|.+++.|.
T Consensus 171 DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~ 230 (334)
T 3iei_A 171 DLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQ 230 (334)
T ss_dssp CTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred ccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEec
Confidence 987621 2223456778889999999998889999999876 5566666664
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=82.56 E-value=3.3 Score=36.50 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=57.1
Q ss_pred CCCCCeeeEee-c-ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-CCCCCCcc
Q 024100 155 NNQHLVALDCG-S-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiG-c-GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~f 231 (272)
+.++.+||=+| + |.|..+..++...+.+|.+++ ++.-++.+++. . .. .++...-.+ +...-..+
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~l-G---------a~--~~i~~~~~~~~~~~~~g~ 216 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKAL-G---------AE--QCINYHEEDFLLAISTPV 216 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHH-T---------CS--EEEETTTSCHHHHCCSCE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHc-C---------CC--EEEeCCCcchhhhhccCC
Confidence 56778999987 4 478888888766678898887 44447777653 1 11 122222111 11111469
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+-.-.- + .+..+.+.|+++|.++..
T Consensus 217 D~v~d~~g~-----~----~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVIDLVGG-----D----VGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEESSCH-----H----HHHHHGGGEEEEEEEEEC
T ss_pred CEEEECCCc-----H----HHHHHHHhccCCCEEEEe
Confidence 998854331 1 236778999999998864
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=81.21 E-value=2.7 Score=37.29 Aligned_cols=97 Identities=13% Similarity=-0.044 Sum_probs=58.6
Q ss_pred CCCCCeeeEeecccc-hHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCC-C-C-CCCC
Q 024100 155 NNQHLVALDCGSGIG-RITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-T-PETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG-~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~-~-~-~~~~ 229 (272)
..++.+||=+|+|.+ .++..+++.. +.+|+++|.+++-++.+++.-. ...+++...|+.+ + . ....
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga---------~~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGA---------DVTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTC---------SEEEEC-CCCHHHHHHHHTTSS
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCC---------eEEEeCCCCCHHHHhhhhcCCC
Confidence 457789999999864 4555454433 6799999999988888876421 1223332222211 0 0 0112
Q ss_pred cceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|.++.... .. ..+....+.|+++|.++..
T Consensus 232 g~d~~~~~~~------~~--~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 232 GVQSAIVCAV------AR--IAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CEEEEEECCS------CH--HHHHHHHHTEEEEEEEEEC
T ss_pred CceEEEEecc------Cc--chhheeheeecCCceEEEE
Confidence 4666654332 12 5778888999999998754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.82 E-value=10 Score=33.30 Aligned_cols=94 Identities=16% Similarity=0.055 Sum_probs=57.8
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
..++.+||=.|+| .|.++..++...+. .+.+++.+++-++.+++. . ....+...-.+.. .
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l-G-----------a~~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF-G-----------AMQTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-T-----------CSEEEETTTSCHHHHHHHHG
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc-C-----------CeEEEeCCCCCHHHHHHhhc
Confidence 4577899999987 45666666544554 457899999988888763 1 1122221111110 0
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-.-. .. ..++.+.+.|++||.++..
T Consensus 226 ~~~g~d~v~d~~G------~~--~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 226 ELRFNQLILETAG------VP--QTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp GGCSSEEEEECSC------SH--HHHHHHHHHCCTTCEEEEC
T ss_pred ccCCccccccccc------cc--chhhhhhheecCCeEEEEE
Confidence 1235787764432 12 4677888999999998754
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=80.74 E-value=1.5 Score=43.20 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCCeeeEeecccchHHHHHHHhc--C-----------CcEEEEeC---CHHHHHHHHHhccc-----------cCC----
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--F-----------NEVDLLEP---VSHFLDAARESLAP-----------ENH---- 205 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~-----------~~v~~vD~---S~~mld~A~~~l~~-----------~~~---- 205 (272)
+.-+|+|+|-|+|.....++... + -+++.+|. +..-+..|-+.... ...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34699999999999888665321 1 24577786 55555543322110 000
Q ss_pred ----CCCCCCCceEEEEeCCCCCCC--C---CCcceeeEechhhhhcChhh--HHHHHHHHHHhcccCcEEE
Q 024100 206 ----MAPDMHKATNFFCVPLQDFTP--E---TGRYDVIWVQWCIGHLTDDD--FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 206 ----~~~~~~~~v~~~~~d~~~~~~--~---~~~fDlIvs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~li 266 (272)
.-....-.++++.+|+.+.-+ . .+.+|.|+.-..--.- +++ -..+|+.+.++++|||.+.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK-NPDMWNEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC-ChhhhhHHHHHHHHHHhCCCCEEE
Confidence 000112356777888754321 1 3579999874321111 111 1379999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 272 | ||||
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 2e-35 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 3e-18 | |
| d1mjfa_ | 276 | c.66.1.17 (A:) Putative spermidine synthetase PF01 | 0.002 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.003 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 125 bits (314), Expect = 2e-35
Identities = 72/210 (34%), Positives = 107/210 (50%), Gaps = 18/210 (8%)
Query: 62 KHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVD 121
K S + +SG D++GK +++ +EMW+ ++ D + + WY + + YW V A+V
Sbjct: 8 KEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVS 65
Query: 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181
GVLGG +V++VDI+GS F+ L ALDCG+GIGRITKNLL + +
Sbjct: 66 GVLGGMDHVHDVDIEGSRNFIASLPGHGTSR--------ALDCGAGIGRITKNLLTKLYA 117
Query: 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241
DLLEPV H L+ E F ++ T YD+I +QW
Sbjct: 118 TTDLLEPVKHMLE--------EAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169
Query: 242 HLTDDDFVSFFKRAKENIARSGTFLLSHSL 271
+LTD DFV FFK ++ + +G +
Sbjct: 170 YLTDADFVKFFKHCQQALTPNGYIFFKENC 199
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.1 bits (193), Expect = 3e-18
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 6 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGT---S 62
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 63 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT 122
Query: 220 PLQDFTPETGRYDVIWVQWC 239
P D VI
Sbjct: 123 PEPDSYDVIWIQWVIGHLTD 142
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 36.7 bits (84), Expect = 0.002
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 151 PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210
+ + L G G G + +L +EV ++E + +++ + +N + M
Sbjct: 66 AMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 125
Query: 211 HKA----TNFFCVPLQDFTPETGRYDVIWVQ-----WCIGHLTDDDFVSFFKRAK 256
+F +DVI L ++F + A
Sbjct: 126 LNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDAL 180
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 35.7 bits (81), Expect = 0.003
Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 8/107 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + L ++ D S+A + +
Sbjct: 34 TLDLGCGNGRNSLYLAANGYDV--------TAWDKNPASMANLERIKAAEGLDNLQTDLV 85
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267
+ G YD I + L + G L+
Sbjct: 86 DLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI 132
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 272 | |||
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 100.0 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.96 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.88 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.87 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.86 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.85 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.82 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.81 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.81 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.8 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.79 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.79 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.78 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.78 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.75 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.74 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.73 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.7 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.69 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.68 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.67 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.67 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.66 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.65 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.64 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.64 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.58 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.58 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.57 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.55 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.52 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.52 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.5 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.47 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.47 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.47 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.46 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.44 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.43 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.43 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.39 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.37 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.35 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.34 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.32 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.31 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.24 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.21 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.2 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.14 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.14 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.13 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.12 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.06 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.04 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.02 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.0 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.98 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.98 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.96 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.93 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.92 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.91 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.9 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.83 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.8 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.79 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.77 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.77 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.67 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.67 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.65 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.63 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.6 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.57 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.56 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.55 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.54 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.46 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.46 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.38 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.38 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.26 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.24 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.21 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.05 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.88 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.74 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.68 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.68 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.63 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.61 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.14 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.14 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.01 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.88 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.75 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.61 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.52 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.33 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.29 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.25 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.83 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.41 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.38 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.2 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.2 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.71 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.61 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.04 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.99 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.79 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.68 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.67 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.44 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.19 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.0 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.84 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.54 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 92.49 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.22 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.13 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.02 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.44 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.79 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 90.3 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.71 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 88.92 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.91 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 88.75 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 86.98 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 86.97 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.59 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.4 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 86.27 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.38 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.11 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 83.49 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 82.52 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 81.36 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.06 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=2e-38 Score=280.94 Aligned_cols=188 Identities=39% Similarity=0.746 Sum_probs=168.5
Q ss_pred CCceeecccCCCCcccCCHHHHHHHHhcccccchhhhhHHHHHHHhhhhcchhhhhccccCCCCCcchhhhhHHHHHHHH
Q 024100 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (272)
Q Consensus 66 ~~~~~~~g~~~~G~~~~~~~e~W~~~~~~~~~~~~~~~~~y~~~~~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L~~l 145 (272)
+..+.+.|.|++|++|.+++++|++++..+.. +....||+++.+||+.+++++++|+|||.+++..|+..++.||..+
T Consensus 12 ~~~~~~~g~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~~l 89 (254)
T d1xtpa_ 12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASL 89 (254)
T ss_dssp -CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTS
T ss_pred cccccccccCCCCCEeccHHHHHHHHhccccc--ccchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHHHhhC
Confidence 67889999999999999999999999876544 4556799999999999999999999999999999999999988865
Q ss_pred HhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC
Q 024100 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (272)
Q Consensus 146 l~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~ 225 (272)
. .....+|||||||+|++|..|+.+.+..|++||+|+.|++.|++++. ..++++|+++|+++++
T Consensus 90 ~--------~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~--------~~~~~~~~~~d~~~~~ 153 (254)
T d1xtpa_ 90 P--------GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA--------GMPVGKFILASMETAT 153 (254)
T ss_dssp T--------TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT--------TSSEEEEEESCGGGCC
T ss_pred C--------CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc--------ccccceeEEccccccc
Confidence 3 24567999999999999999877788899999999999999999874 2457899999999998
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+++++||+||+++++||++|+++.++|++|++.|+|||.+++.|+.
T Consensus 154 ~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence 8878999999999999999999999999999999999999998753
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.5e-30 Score=220.17 Aligned_cols=160 Identities=43% Similarity=0.864 Sum_probs=138.6
Q ss_pred hhHHHHHHHhhhhcchhhhhccccCCCCCcchhhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCC
Q 024100 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (272)
Q Consensus 102 ~~~~y~~~~~YW~~~~~~~~~~lggy~~~s~~d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~ 181 (272)
...||+++.+||++++++.++|+++|.+.+..++..++.|+...+..... ..+..+|||+|||+|+++..++.+.+.
T Consensus 8 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~ 84 (222)
T d2ex4a1 8 EKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLFR 84 (222)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhccC---CCCCCEEEEeccCCCHhhHHHHHhcCC
Confidence 55799999999999999999999999998888988888888877654332 456679999999999999988666677
Q ss_pred cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhccc
Q 024100 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIAR 261 (272)
Q Consensus 182 ~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkp 261 (272)
+|++||+|+.||+.|++++... ...+++|+++|++++++++++||+|++.+++||++++++.++|++++++|+|
T Consensus 85 ~v~~vD~s~~~l~~ak~~~~~~------~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~ 158 (222)
T d2ex4a1 85 EVDMVDITEDFLVQAKTYLGEE------GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP 158 (222)
T ss_dssp EEEEEESCHHHHHHHHHHTGGG------GGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred EEEEeecCHHHhhccccccccc------cccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCC
Confidence 9999999999999999987532 3457899999999998777899999999999999999888999999999999
Q ss_pred CcEEEEecC
Q 024100 262 SGTFLLSHS 270 (272)
Q Consensus 262 gG~liv~E~ 270 (272)
||.+++.+.
T Consensus 159 ~G~~~i~~~ 167 (222)
T d2ex4a1 159 NGIIVIKDN 167 (222)
T ss_dssp EEEEEEEEE
T ss_pred cceEEEEEc
Confidence 999998764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=1.8e-22 Score=171.09 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=102.7
Q ss_pred hhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCc
Q 024100 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (272)
Q Consensus 134 d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~ 213 (272)
.....-..+..++.+.+ ++..+|||||||+|.++..+ ++.+.+|+|+|+|+.|++.|++++... ...
T Consensus 19 ~~~~~~~~~~~~~~~~l-----~~~~~ILDiGcG~G~~~~~l-a~~~~~v~giD~S~~~i~~ak~~~~~~-------~~~ 85 (226)
T d1ve3a1 19 EYRSRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLL-EDYGFEVVGVDISEDMIRKAREYAKSR-------ESN 85 (226)
T ss_dssp HHHHHHHHHHHHHHHSC-----CSCCEEEEETCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHT-------TCC
T ss_pred HHHHHHHHHHHHHHHhc-----CCCCEEEEECCCcchhhhhH-hhhhcccccccccccchhhhhhhhccc-------ccc
Confidence 33344445666666544 36679999999999999977 688889999999999999999887432 346
Q ss_pred eEEEEeCCCCCCCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 214 v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.++++|+.++++++++||+|+|.++++|+++.++.++|+++.++|+|||.+++..
T Consensus 86 ~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 86 VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp CEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 78999999999888889999999999999998888899999999999999987653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=1.1e-22 Score=175.50 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=95.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++++.+|||+|||+|.++..+ ++.+.+|++||+|+.|++.|++++... ...++.|+++|++++++++++||+|
T Consensus 14 ~~~~~rILDiGcGtG~~~~~l-a~~~~~v~gvD~S~~~l~~A~~~~~~~------~~~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAF-SPYVQECIGVDATKEMVEVASSFAQEK------GVENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHH-GGGSSEEEEEESCHHHHHHHHHHHHHH------TCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHH-HHhCCeEEEEeCChhhhhhhhhhhccc------cccccccccccccccccccccccee
Confidence 678899999999999999977 678899999999999999999887432 3467999999999998888999999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|.++++|++|++ .+|++++++|+|||.+++.+
T Consensus 87 ~~~~~l~~~~d~~--~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 87 TCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred eeeceeecccCHH--HHHHHHHHeeCCCcEEEEEE
Confidence 9999999998877 99999999999999988765
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.87 E-value=1.3e-22 Score=173.40 Aligned_cols=106 Identities=16% Similarity=0.289 Sum_probs=94.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++++.+|||||||+|.++..+ ++.+.+|+++|+|+.|++.|++++... ..++++|+++|++++++++++||+|
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~i~~A~~~~~~~------~~~~i~~~~~d~~~l~~~~~~fD~v 85 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAF-APFVKKVVAFDLTEDILKVARAFIEGN------GHQQVEYVQGDAEQMPFTDERFHIV 85 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHH-GGGSSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHH-HHhCCEEEEEECCHHHHhhhhhccccc------ccccccccccccccccccccccccc
Confidence 677889999999999999977 688899999999999999999887542 3568999999999998888899999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|..++||++|++ ++|++++++|+|||++++.+
T Consensus 86 ~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 86 TCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccCCHH--HHHHHHHHhcCCCcEEEEEe
Confidence 9999999998887 99999999999999998764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.86 E-value=1.5e-21 Score=172.94 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=95.8
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+++++.+|||||||+|.++..|+.+...+|++||+|+.|++.|+++.... +...+++|+++|++++++++++||+
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~-----gl~~~v~~~~~d~~~l~~~~~sfD~ 138 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA-----GLADNITVKYGSFLEIPCEDNSYDF 138 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH-----TCTTTEEEEECCTTSCSSCTTCEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccc-----cccccccccccccccccccccccch
Confidence 36788999999999999999885445679999999999999999987542 2346899999999999888889999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++..+++|+++++ .+|++++++|+|||.+++.+
T Consensus 139 V~~~~~l~h~~d~~--~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 139 IWSQDAFLHSPDKL--KVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp EEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred hhccchhhhccCHH--HHHHHHHHhcCCCcEEEEEE
Confidence 99999999998877 99999999999999998865
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.3e-21 Score=167.84 Aligned_cols=110 Identities=19% Similarity=0.312 Sum_probs=92.1
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~ 218 (272)
..++..++.+.. +++.+|||+|||+|.++..| ++.+.+|+|||+|+.|++.|+++.. ..+++
T Consensus 29 ~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~~l-~~~~~~v~giD~s~~~l~~a~~~~~------------~~~~~ 90 (246)
T d2avna1 29 HRLIGSFLEEYL-----KNPCRVLDLGGGTGKWSLFL-QERGFEVVLVDPSKEMLEVAREKGV------------KNVVE 90 (246)
T ss_dssp HHHHHHHHHHHC-----CSCCEEEEETCTTCHHHHHH-HTTTCEEEEEESCHHHHHHHHHHTC------------SCEEE
T ss_pred HHHHHHHHHHhc-----CCCCEEEEECCCCchhcccc-cccceEEEEeecccccccccccccc------------ccccc
Confidence 344555555443 35679999999999999988 6888899999999999999998741 24678
Q ss_pred eCCCCCCCCCCcceeeEec-hhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 219 VPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 219 ~d~~~~~~~~~~fDlIvs~-~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++++++++++||+|+|. .++||++|++ ++|+++.++|+|||.+++.
T Consensus 91 ~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~--~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 91 AKAEDLPFPSGAFEAVLALGDVLSYVENKD--KAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp CCTTSCCSCTTCEEEEEECSSHHHHCSCHH--HHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccccccccceeeecchhhhhhhHH--HHHHHHHhhcCcCcEEEEE
Confidence 9999998888899999985 6899999887 8999999999999998764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=1.2e-21 Score=169.36 Aligned_cols=117 Identities=18% Similarity=0.238 Sum_probs=97.8
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~ 218 (272)
..++..++.+.. ..+..+|||+|||||.++..| ++.+.+|+|||+|+.|++.|++++.. ...+++|++
T Consensus 27 ~~~~~~~~~~~~----~~~~~~iLDiGcGtG~~~~~l-~~~~~~v~gvD~s~~mi~~a~~~~~~-------~~~~i~~~~ 94 (251)
T d1wzna1 27 IDFVEEIFKEDA----KREVRRVLDLACGTGIPTLEL-AERGYEVVGLDLHEEMLRVARRKAKE-------RNLKIEFLQ 94 (251)
T ss_dssp HHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHH-------TTCCCEEEE
T ss_pred HHHHHHHHHHhc----CCCCCEEEEeCCCCCccchhh-cccceEEEEEeecccccccccccccc-------ccccchhee
Confidence 345666665443 345679999999999999977 58888999999999999999998753 234799999
Q ss_pred eCCCCCCCCCCcceeeEec-hhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 219 VPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 219 ~d~~~~~~~~~~fDlIvs~-~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|+++++++ ++||+|+|. .+++|++.++..++|++++++|+|||++++.
T Consensus 95 ~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 95 GDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp SCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999876 589999986 5888988788889999999999999988763
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=1.7e-20 Score=162.49 Aligned_cols=116 Identities=19% Similarity=0.310 Sum_probs=94.6
Q ss_pred HHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 138 s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
...++..++.+. ..++.+|||+|||+|+++..| ++.+.+|+|||+|+.|++.|+++... ...+++|+
T Consensus 23 ~~~~~~~~~~~~-----~~~~~~vLDiGCG~G~~~~~l-~~~g~~v~GvD~S~~ml~~A~~~~~~-------~~~~v~~~ 89 (246)
T d1y8ca_ 23 WSDFIIEKCVEN-----NLVFDDYLDLACGTGNLTENL-CPKFKNTWAVDLSQEMLSEAENKFRS-------QGLKPRLA 89 (246)
T ss_dssp HHHHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHH-GGGSSEEEEECSCHHHHHHHHHHHHH-------TTCCCEEE
T ss_pred HHHHHHHHHHHh-----CCCCCeEEEEeCcCCHHHHHH-HHhCCccEeeccchhhhhhccccccc-------cCccceee
Confidence 344565555532 234579999999999999988 68888999999999999999988743 23479999
Q ss_pred EeCCCCCCCCCCcceeeEec-hhhhhcCh-hhHHHHHHHHHHhcccCcEEEE
Q 024100 218 CVPLQDFTPETGRYDVIWVQ-WCIGHLTD-DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 218 ~~d~~~~~~~~~~fDlIvs~-~vl~hl~d-~~~~~~l~~~~r~LkpgG~liv 267 (272)
++|+.+++++ ++||+|+|. .+++|+.+ +++..+|++++++|+|||.+++
T Consensus 90 ~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 90 CQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999998764 699999975 68888864 5778999999999999998874
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.1e-20 Score=162.17 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=93.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|.++..++.+...+|++||+|+.|++.|+++.... ....+++|.++|+.++. .+++||+|
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~-----gl~~~v~~~~~d~~~~~-~~~~fD~v 104 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL-----GVSERVHFIHNDAAGYV-ANEKCDVA 104 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEESCCTTCC-CSSCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHh-----hccccchhhhhHHhhcc-ccCceeEE
Confidence 6788899999999999999885444679999999999999999986542 23457999999999985 45799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+|..+++|++|.+ .+|++++++|||||.+++.+
T Consensus 105 ~~~~~~~~~~d~~--~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 105 ACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp EEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEE
T ss_pred EEEehhhccCCHH--HHHHHHHHHcCcCcEEEEEe
Confidence 9999999999887 99999999999999999875
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=4.6e-20 Score=155.20 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=92.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
++++|||||||+|+.+..| ++.+.+|+++|+|+.|++.++++.... ...++.+...|+.++.++ ++||+|++
T Consensus 30 ~~grvLDiGcG~G~~~~~l-a~~g~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~~~~~d~~~~~~~-~~fD~I~~ 101 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYL-AANGYDVTAWDKNPASMANLERIKAAE------GLDNLQTDLVDLNTLTFD-GEYDFILS 101 (198)
T ss_dssp CSCEEEEETCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEECCTTTCCCC-CCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHH-HHHhhhhccccCcHHHHHHHHHHhhhc------cccchhhhheeccccccc-ccccEEEE
Confidence 4569999999999999988 588899999999999999999876432 345789999999988764 69999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
..++||+++++..++++++.++|+|||++++..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999998888899999999999999988754
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.81 E-value=9.1e-20 Score=156.45 Aligned_cols=99 Identities=23% Similarity=0.340 Sum_probs=88.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++.+.+|++||+|+.|++.|+++.. .+++++++++++++++ ++||+|+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l-~~~g~~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~~~~~~~~-~~fD~I~ 86 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRL-QEHFNDITCVEASEEAISHAQGRLK----------DGITYIHSRFEDAQLP-RRYDNIV 86 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHH-TTTCSCEEEEESCHHHHHHHHHHSC----------SCEEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHH-HHcCCeEEEEeCcHHHhhhhhcccc----------cccccccccccccccc-ccccccc
Confidence 35668999999999999977 6888899999999999999998752 4789999999998764 7999999
Q ss_pred echhhhhcChhhHHHHHHHHH-HhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAK-ENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~-r~LkpgG~liv~ 268 (272)
+..+|+|+.|+. .+|++++ ++|+|||.+++.
T Consensus 87 ~~~vleh~~d~~--~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 87 LTHVLEHIDDPV--ALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp EESCGGGCSSHH--HHHHHHHHTTEEEEEEEEEE
T ss_pred ccceeEecCCHH--HHHHHHHHHhcCCCceEEEE
Confidence 999999998887 9999998 789999998864
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.80 E-value=2.3e-19 Score=153.58 Aligned_cols=107 Identities=13% Similarity=0.246 Sum_probs=90.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhc----CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~----~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+++.+|||+|||+|..+..|+ +. ..+|+|+|+|+.|++.|++++... ....++.+.++|+.++++ +.+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~-~~~~~~~~~v~giD~S~~ml~~A~~~~~~~-----~~~~~~~~~~~d~~~~~~--~~~ 109 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSAR-RNINQPNVKIIGIDNSQPMVERCRQHIAAY-----HSEIPVEILCNDIRHVEI--KNA 109 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHH-HTCCCSSCEEEEECSCHHHHHHHHHHHHTS-----CCSSCEEEECSCTTTCCC--CSE
T ss_pred CCCCEEEEeccchhhHHHHHH-HhhcCCCCceEEeCCCHHHHHHHHHHhHhh-----cccchhhhccchhhcccc--ccc
Confidence 467799999999999999885 43 458999999999999999987542 234567888888877754 479
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+|++++++||++.++..++|++++++|+|||.+++.|.
T Consensus 110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 999999999999888888999999999999999998763
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.79 E-value=3.4e-19 Score=158.30 Aligned_cols=105 Identities=14% Similarity=0.257 Sum_probs=91.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..+ ++. ..+|+++|+|+.|++.|++++.. ...+++|.+.|+++++++ ++|
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~l-a~~~~~~~~v~giD~s~~~l~~a~~~~~~-------~~~~~~f~~~d~~~~~~~-~~f 95 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVL-MPLLPEGSKYTGIDSGETLLAEARELFRL-------LPYDSEFLEGDATEIELN-DKY 95 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHH-TTTSCTTCEEEEEECCHHHHHHHHHHHHS-------SSSEEEEEESCTTTCCCS-SCE
T ss_pred cCCcCEEEEecCcCCHHHHHH-HHhCCCCCEEEEEecchhHhhhhhccccc-------cccccccccccccccccc-CCc
Confidence 457789999999999999977 564 34799999999999999998753 234789999999998765 589
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
|+|++++++||+++++ .+|++++++|||||.+++.|.
T Consensus 96 D~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 96 DIAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp EEEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEEC
T ss_pred eEEEEehhhhcCCCHH--HHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999999887 999999999999999988764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.79 E-value=5.4e-19 Score=154.04 Aligned_cols=108 Identities=14% Similarity=0.054 Sum_probs=88.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlI 234 (272)
.++.+|||+|||+|..+..++...+..|+|||+|+.|++.|+++.... ....++.|+++|+...++ ..++||+|
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~-----~~~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM-----KRRFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS-----CCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhc-----CCCcceEEEEcchhhhcccccccceEE
Confidence 467799999999999999885344568999999999999999886432 234589999999966544 34689999
Q ss_pred EechhhhhcCh--hhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTD--DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d--~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++++||+.+ .++..+|+++.++|+|||.++..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 99999999843 45678999999999999998763
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.78 E-value=2.6e-19 Score=147.75 Aligned_cols=113 Identities=12% Similarity=0.000 Sum_probs=92.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC------CCCCCCceEEEEeCCCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~------~~~~~~~v~~~~~d~~~~~~~~ 228 (272)
++++.+|||+|||+|+.+..| ++.+.+|+++|+|+.||+.|+++....... .......++|+++|+.+.++.+
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~l-a~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWL-SGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHH-HHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCCEEEEecCcCCHHHHHH-HHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 567889999999999999988 578889999999999999999987432100 0001345689999998876433
Q ss_pred -CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 -~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..||+|++.++++|+++++...+++++.+.|||||.+++.
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 5899999999999999988889999999999999987654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=2.4e-19 Score=151.10 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=82.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEe
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs 236 (272)
+.++|||||||+|.++..+ ..+++||+|+.|++.|+++ ++.++++|++++++++++||+|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~-------------~~~~~~~d~~~l~~~~~~fD~I~~ 97 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALM 97 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc-------------cccccccccccccccccccccccc
Confidence 3558999999999998866 3568999999999999863 578999999999888889999999
Q ss_pred chhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 237 QWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 237 ~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.+|+|++|++ ++|++++++|+|||.+++.+
T Consensus 98 ~~~l~h~~d~~--~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 98 VTTICFVDDPE--RALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp ESCGGGSSCHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccc--cchhhhhhcCCCCceEEEEe
Confidence 99999998876 99999999999999988764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.2e-18 Score=148.20 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=93.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCC-----------CCCCCCCceEEEEeCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-----------MAPDMHKATNFFCVPLQD 223 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~-----------~~~~~~~~v~~~~~d~~~ 223 (272)
..++.+|||+|||+|+.+..| ++.+.+|++||.|+.||+.|+++...... .......+++|+++|+.+
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~L-A~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWF-ADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHH-HHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCCEEEEeCCCCcHHHHHH-HhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 456779999999999999988 68888999999999999999987643210 001124579999999987
Q ss_pred CCC-CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 224 FTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 224 ~~~-~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++ ..+.||+|+...++||++.++...+++++.++|+|||.+++.
T Consensus 122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~ 167 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLC 167 (229)
T ss_dssp GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEE
Confidence 753 347999999999999999988899999999999999987653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=1.1e-17 Score=148.88 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=92.3
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
++.++.+|||||||+|.++..++...+.+|++|++|+++++.|++++... +....+.+...|..++ +++||.
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~-----~l~~~~~~~~~d~~~~---~~~fD~ 120 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI-----DTNRSRQVLLQGWEDF---AEPVDR 120 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS-----CCSSCEEEEESCGGGC---CCCCSE
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhh-----ccccchhhhhhhhhhh---ccchhh
Confidence 47788999999999999999875455789999999999999999988643 2345677877777655 368999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++..+++|+.++.+..+|++++++|||||.+++..
T Consensus 121 i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 121 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 999999999998878899999999999999998754
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=3.7e-17 Score=145.91 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=94.3
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
++.++.+|||||||+|.++..++...+.+|++|++|+..++.|+++.... +...++++..+|+.+++ ++||.
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~-----g~~~~v~~~~~d~~~~~---~~fD~ 130 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS-----ENLRSKRVLLAGWEQFD---EPVDR 130 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC-----CCCSCEEEEESCGGGCC---CCCSE
T ss_pred CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhh-----hhhhhhHHHHhhhhccc---ccccc
Confidence 47889999999999999999987677889999999999999999987543 34578999999987763 58999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|++.++++|+..+....+|+++.++|+|||.+++.
T Consensus 131 i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 131 IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp EEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred eeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence 99999999998887779999999999999998864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=7.6e-17 Score=144.28 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=90.6
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
++.++.+|||||||+|.++..++.+.+.+|++|++|+++++.|+++.... +....+.+...|... .+++||.
T Consensus 58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~-----~l~~~v~~~~~d~~~---~~~~fD~ 129 (291)
T d1kpia_ 58 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV-----DSPRRKEVRIQGWEE---FDEPVDR 129 (291)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHS-----CCSSCEEEEECCGGG---CCCCCSE
T ss_pred CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhh-----ccchhhhhhhhcccc---cccccce
Confidence 47889999999999999999887677889999999999999999987643 234567887777643 3579999
Q ss_pred eEechhhhhcChh-------hHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDD-------DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~-------~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|..+++|+.+. .+..+|++|.++|+|||.+++.
T Consensus 130 i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 130 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred EeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 9999999999873 3569999999999999999865
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.70 E-value=3.1e-17 Score=143.09 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=89.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+....+|||||||+|.++..++ +.++ .++++|. +.|++.+++++... ....+++++.+|+.+.. +.+||
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la-~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~rv~~~~~D~~~~~--~~~~D 148 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIA-RRAPHVSATVLEM-AGTVDTARSYLKDE-----GLSDRVDVVEGDFFEPL--PRKAD 148 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-TTHHHHHHHHHHHT-----TCTTTEEEEECCTTSCC--SSCEE
T ss_pred CccCCEEEEeCCCCCHHHHHHH-HhcceeEEEEccC-HHHHHHHHHHHHHh-----hcccchhhccccchhhc--ccchh
Confidence 4566799999999999999885 6655 5677787 67999999987643 23468999999986643 24799
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
+|+++++|||+++++..++|++++++|+|||.+++.|.
T Consensus 149 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 149 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred heeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 99999999999999888999999999999999998875
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.2e-17 Score=145.36 Aligned_cols=105 Identities=15% Similarity=0.238 Sum_probs=79.9
Q ss_pred CCCeeeEeecccchHHHHHHHh---cC----CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCce--EEEEeCCCCC---
Q 024100 157 QHLVALDCGSGIGRITKNLLIR---YF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT--NFFCVPLQDF--- 224 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~---~~----~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v--~~~~~d~~~~--- 224 (272)
+..+|||||||+|.++..++.. .+ ..+++||+|+.|++.|++++.... ...++ .+.+.+++++
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 114 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-----NLENVKFAWHKETSSEYQSR 114 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-----SCTTEEEEEECSCHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-----ccccccccchhhhhhhhcch
Confidence 4458999999999998887533 12 257999999999999999875431 12333 4444444322
Q ss_pred ---CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 225 ---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 225 ---~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.++++||+|++.++|||++|+. .+|++++++|+|||.+++.
T Consensus 115 ~~~~~~~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 115 MLEKKELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp HTTSSSCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEE
T ss_pred hcccCCCCceeEEEEccceecCCCHH--HHHHHHHhhCCCCCEEEEE
Confidence 23457999999999999998877 9999999999999988765
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=1.4e-16 Score=133.69 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=87.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..++.+|||+|||+|.++..+ ++.+++|+++|.|+.|++.|++++...+ -...++++..+|+.+. +++++||+|
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~l-a~~~~~v~~iD~s~~~i~~a~~n~~~~~----l~~~~i~~~~~d~~~~-~~~~~fD~I 123 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIAL-ADEVKSTTMADINRRAIKLAKENIKLNN----LDNYDIRVVHSDLYEN-VKDRKYNKI 123 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHH-GGGSSEEEEEESCHHHHHHHHHHHHHTT----CTTSCEEEEECSTTTT-CTTSCEEEE
T ss_pred cCCCCeEEEEeecCChhHHHH-HhhccccceeeeccccchhHHHHHHHhC----CccceEEEEEcchhhh-hccCCceEE
Confidence 456789999999999999977 6889999999999999999999875421 1234689999998774 345799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++.++|+. .+....+++++.+.|+|||.+++.
T Consensus 124 i~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 124 ITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp EECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcccEEec-chhhhhHHHHHHHhcCcCcEEEEE
Confidence 999988654 333458999999999999987653
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.6e-17 Score=141.70 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=82.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD 232 (272)
.++.+|||||||+|..+..++ +. ..+|++||+|+.|++.|+++... ...++.++..++... ++++++||
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a-~~~~~~v~~id~s~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD 123 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQ-EAPIDEHWIIECNDGVFQRLRDWAPR-------QTHKVIPLKGLWEDVAPTLPDGHFD 123 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHH-TSCEEEEEEEECCHHHHHHHHHHGGG-------CSSEEEEEESCHHHHGGGSCTTCEE
T ss_pred cCCCeEEEeeccchHHHHHHH-HcCCCeEEEeCCCHHHHHHHHHHhhh-------ccccccccccccccccccccccccc
Confidence 456799999999999999885 54 46899999999999999998753 245677777776543 34456888
Q ss_pred eeE-----echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIW-----VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIv-----s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.|+ +...++|+.+.+ .++++++++|||||.++..
T Consensus 124 ~i~fD~~~~~~~~~~~~~~~--~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 124 GILYDTYPLSEETWHTHQFN--FIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp EEEECCCCCBGGGTTTHHHH--HHHHTHHHHEEEEEEEEEC
T ss_pred ceeecccccccccccccCHH--HHHHHHHHHcCCCcEEEEE
Confidence 887 577888876666 9999999999999988753
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.8e-16 Score=139.63 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=80.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++..| ++.++ .++++|+|+.|++.|+++. ++++|.++|+.++++++++||+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l-~~~~~~~~~~giD~s~~~~~~a~~~~-----------~~~~~~~~d~~~l~~~~~sfD~ 150 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAF-ADALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMDA 150 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHH-HHTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEEE
T ss_pred CCCCEEEEeCCCCcHHHHHH-HHHCCCCEEEEecchHhhhhhhhccc-----------ccccceeeehhhccCCCCCEEE
Confidence 45679999999999999988 46654 7789999999999998864 4789999999999988899999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|++.++++| ++++.|+|||||.+++..
T Consensus 151 v~~~~~~~~---------~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 151 IIRIYAPCK---------AEELARVVKPGGWVITAT 177 (268)
T ss_dssp EEEESCCCC---------HHHHHHHEEEEEEEEEEE
T ss_pred EeecCCHHH---------HHHHHHHhCCCcEEEEEe
Confidence 999998876 357899999999998764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.66 E-value=1.8e-16 Score=132.23 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=88.6
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||+|||+|.++..+ ++.+.+|+++|.|+.|++.|++++... +...+++++++|+.+...+...||+|
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~l-A~~~~~V~avD~~~~~l~~a~~n~~~~-----gl~~~v~~~~gda~~~~~~~~~~D~v 104 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLEL-AGRVRRVYAIDRNPEAISTTEMNLQRH-----GLGDNVTLMEGDAPEALCKIPDIDIA 104 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHH-HTTSSEEEEEESCHHHHHHHHHHHHHT-----TCCTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEEECCeEcccccc-cccceEEEEecCCHHHHHHHHHHHHHc-----CCCcceEEEECchhhcccccCCcCEE
Confidence 568889999999999999987 578889999999999999999998653 23368999999988776566799999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++....+| ...+++.+.+.|+|||++++..
T Consensus 105 ~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCcccc-----chHHHHHHHHHhCcCCEEEEEe
Confidence 99987765 3479999999999999987753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=1e-16 Score=142.20 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~ 218 (272)
..++..++.. ....+|||+|||+|+++..| ++.+.+|+++|+|+.||+.|+++....+.. .......+..
T Consensus 45 ~~~l~~~l~~-------~~~~~vLD~GcG~G~~~~~l-a~~g~~v~gvD~S~~ml~~A~~~~~~~~~~--~~~~~~~~~~ 114 (292)
T d1xvaa_ 45 KAWLLGLLRQ-------HGCHRVLDVACGTGVDSIML-VEEGFSVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEE 114 (292)
T ss_dssp HHHHHHHHHH-------TTCCEEEESSCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEE
T ss_pred HHHHHHHhhh-------cCCCEEEEecCCCcHHHHHH-HHcCCeeeeccCchHHHHHHHHHHHhcccc--cccceeeeee
Confidence 4556665542 34568999999999999988 577789999999999999999876432110 0012234445
Q ss_pred eCCCC----CCCCCCcceeeEec-hhhhhcCh-----hhHHHHHHHHHHhcccCcEEEE
Q 024100 219 VPLQD----FTPETGRYDVIWVQ-WCIGHLTD-----DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 219 ~d~~~----~~~~~~~fDlIvs~-~vl~hl~d-----~~~~~~l~~~~r~LkpgG~liv 267 (272)
.++.. +++ .++||+|+|. .+++|+++ .+...+|++++++|+|||.+|+
T Consensus 115 ~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 172 (292)
T d1xvaa_ 115 ANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172 (292)
T ss_dssp CCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence 55432 222 3589999975 58999975 3577899999999999999876
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.4e-17 Score=139.68 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=86.2
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCC--------
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM-------- 210 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~-------- 210 (272)
..++.+.+.+.+.. +..++.+|||+|||+|.++..++.+.+.+|+++|+|+.|++.|++++......-...
T Consensus 34 ~~~~~~~~~~~~~~-~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~ 112 (257)
T d2a14a1 34 LKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE 112 (257)
T ss_dssp HHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHH
Confidence 33444444333321 234667999999999999885644456689999999999999999875321100000
Q ss_pred ---------------CCce-EEEEeCC----CCCCCCCCcceeeEechhhhhcCh--hhHHHHHHHHHHhcccCcEEEEe
Q 024100 211 ---------------HKAT-NFFCVPL----QDFTPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 211 ---------------~~~v-~~~~~d~----~~~~~~~~~fDlIvs~~vl~hl~d--~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+ .....+. ...+.+.++||+|++.+++||++. +++..+++++.++|||||.+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~ 192 (257)
T d2a14a1 113 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 192 (257)
T ss_dssp HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence 0000 1111111 112334578999999999999964 46779999999999999999876
Q ss_pred c
Q 024100 269 H 269 (272)
Q Consensus 269 E 269 (272)
+
T Consensus 193 ~ 193 (257)
T d2a14a1 193 V 193 (257)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.64 E-value=5.3e-16 Score=135.84 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=90.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+....+|||||||+|.++..++ +.++ +++++|. +.+++.|++++... ....++.+...|+.+.. +..||
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~-~~~P~~~~~~~Dl-p~~~~~a~~~~~~~-----~~~~ri~~~~~d~~~~~--p~~~D 149 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIA-LRAPHLRGTLVEL-AGPAERARRRFADA-----GLADRVTVAEGDFFKPL--PVTAD 149 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTSCC--SCCEE
T ss_pred CccCCEEEEECCCCCHHHHHHH-HhhcCcEEEEecC-hHHHHHHHHHHhhc-----CCcceeeeeeeeccccc--cccch
Confidence 4566799999999999999885 6655 6788897 78999999887543 23467999999986632 34699
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++.++|||+++++..++|++++++|+|||.+++.|..
T Consensus 150 ~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 150 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 999999999999998889999999999999999998853
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.58 E-value=7.1e-16 Score=135.34 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..+ ++.+.+|+++|+|+.|++.|+++... ...++.++++|+.+.. +.++||+|+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~a-a~~g~~V~gvDis~~av~~A~~na~~-------n~~~~~~~~~d~~~~~-~~~~fD~V~ 189 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAA-EKLGGKALGVDIDPMVLPQAEANAKR-------NGVRPRFLEGSLEAAL-PFGPFDLLV 189 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHH-------TTCCCEEEESCHHHHG-GGCCEEEEE
T ss_pred CccCEEEEcccchhHHHHHH-HhcCCEEEEEECChHHHHHHHHHHHH-------cCCceeEEeccccccc-cccccchhh
Confidence 46789999999999999966 68889999999999999999998753 2335678899886643 346899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++...++ +..++.++.++|+|||++++++
T Consensus 190 ani~~~~-----l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 190 ANLYAEL-----HAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp EECCHHH-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccc-----HHHHHHHHHHhcCCCcEEEEEe
Confidence 9876644 4578999999999999998764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.9e-15 Score=132.49 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=82.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCC------------------------C
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPD------------------------M 210 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~------------------------~ 210 (272)
..++.++||||||+|.++...+++.+.+|+++|.|+.|++.+++.+......-.. .
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 4567899999999998876454577889999999999999999877432100000 0
Q ss_pred CCceEEEEeCCCC------CCCCCCcceeeEechhhhhcCh--hhHHHHHHHHHHhcccCcEEEEec
Q 024100 211 HKATNFFCVPLQD------FTPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 211 ~~~v~~~~~d~~~------~~~~~~~fDlIvs~~vl~hl~d--~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
........+|+.. ....+++||+|++.+++||+.. +++..+++++.++|||||.+++..
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~ 198 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 198 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0012234445532 1223458999999999999963 467799999999999999998754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.57 E-value=8.8e-15 Score=126.42 Aligned_cols=110 Identities=10% Similarity=-0.020 Sum_probs=87.5
Q ss_pred cCCCccCCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-
Q 024100 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (272)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~- 225 (272)
.+...++.++.+|||+|||+|..+..+ ++.+ ..|++||+|+.|++.++++.. ..+++..+..|.....
T Consensus 66 gl~~l~ikpG~~VLDlGcGsG~~~~~l-a~~~~~g~V~aVDiS~~~i~~a~~~a~--------~~~ni~~i~~d~~~~~~ 136 (230)
T d1g8sa_ 66 GLKVMPIKRDSKILYLGASAGTTPSHV-ADIADKGIVYAIEYAPRIMRELLDACA--------ERENIIPILGDANKPQE 136 (230)
T ss_dssp TCCCCCCCTTCEEEEESCCSSHHHHHH-HHHTTTSEEEEEESCHHHHHHHHHHTT--------TCTTEEEEECCTTCGGG
T ss_pred hHHhCCCCCCCEEEEeCEEcCHHHHHH-HHhCCCCEEEEEeCcHHHHHHHHHHHh--------hhcccceEEEeeccCcc
Confidence 344445788999999999999999988 5665 479999999999999998863 2457788888887653
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
+.+..+|++++...++|..+.+ .+++++++.|||||.+++..
T Consensus 137 ~~~~~~~v~~i~~~~~~~~~~~--~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 137 YANIVEKVDVIYEDVAQPNQAE--ILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp GTTTCCCEEEEEECCCSTTHHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred cccccceeEEeeccccchHHHH--HHHHHHHHhcccCceEEEEe
Confidence 3445788888777777776655 89999999999999988753
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=4.6e-15 Score=126.59 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=82.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.++..+ ++. . ..|+++|.++.+++.|++++... ...++.+.++|..+..+..++|
T Consensus 73 l~~g~~VLdiG~GtG~~s~~l-a~~~~~~g~V~~id~~~~~~~~a~~~~~~~------~~~n~~~~~~d~~~~~~~~~~f 145 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVM-SRVVGEKGLVVSVEYSRKICEIAKRNVERL------GIENVIFVCGDGYYGVPEFSPY 145 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHH-HHHHCTTCEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCGGGCCE
T ss_pred ccccceEEEecCccchhHHHH-HHHhCCCCcEEEeecchhhHHHhhhhHhhh------cccccccccCchHHccccccch
Confidence 678899999999999999966 554 3 37999999999999999998643 4568899999988766666789
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++..+++|+++ ++.+.|+|||.+++
T Consensus 146 D~I~~~~~~~~~p~--------~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 146 DVIFVTVGVDEVPE--------TWFTQLKEGGRVIV 173 (213)
T ss_dssp EEEEECSBBSCCCH--------HHHHHEEEEEEEEE
T ss_pred hhhhhhccHHHhHH--------HHHHhcCCCcEEEE
Confidence 99999999998764 35678999999876
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=1.4e-14 Score=127.60 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=87.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
+.++.+|||+|||+|.+|..|+...++ +|+++|.+++|++.|++++.... .....++.+.++|+.+.++++++||
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~---~~~~~nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY---GQPPDNWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH---TSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc---cCCCceEEEEecccccccccCCCcc
Confidence 678999999999999999988533343 89999999999999999875431 1234689999999988777778999
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
.|++ |++++. .++.+++++|||||.+++..
T Consensus 171 aV~l-----dlp~P~--~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 171 RAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp EEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEE
T ss_pred eEEE-----ecCCHH--HHHHHHHhccCCCCEEEEEe
Confidence 9975 788888 99999999999999987643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.52 E-value=1.5e-14 Score=123.17 Aligned_cols=105 Identities=10% Similarity=0.000 Sum_probs=79.8
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
++.++.+|||+|||+|..+..+ ++..+ +|++||+|+.|++.|+++... ..++.++..|....+.....+
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~l-a~~v~~g~V~gvDis~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~~~~~ 123 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHL-ADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIV 123 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHH-HHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTC
T ss_pred CCCCCCEEEEeCCcCCHHHHHH-HHhccCCeEEEEeCCHHHHHHHHHHhhc--------cCCceEEEeeccCcccccccc
Confidence 4778899999999999999977 56543 799999999999999988643 358999999988764433344
Q ss_pred eeeEec-hhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 232 DVIWVQ-WCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 232 DlIvs~-~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
|.+.+. ..+.|..+.+ .+++++++.|||||.+++..
T Consensus 124 ~~vd~v~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 124 EKVDLIYQDIAQKNQIE--ILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CCEEEEEECCCSTTHHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEecccChhhHH--HHHHHHHHHhccCCeEEEEE
Confidence 443322 2344544444 89999999999999987753
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=4e-14 Score=127.67 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=84.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..+ ++.+ ..|+++|.|+ |++.|++..... ....++.++++++.+++.++++||+|+
T Consensus 38 ~~~~VLDlGcGtG~ls~~a-a~~Ga~~V~avd~s~-~~~~a~~~~~~~-----~~~~~i~~i~~~~~~l~~~~~~~D~i~ 110 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFA-AKHGAKHVIGVDMSS-IIEMAKELVELN-----GFSDKITLLRGKLEDVHLPFPKVDIII 110 (328)
T ss_dssp TTCEEEEETCTTSHHHHHH-HHTCCSEEEEEESST-HHHHHHHHHHHT-----TCTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred CcCEEEEeCCCCCHHHHHH-HHhCCCEEEEEeCCH-HHHHHHHHHHHh-----CccccceEEEeehhhccCcccceeEEE
Confidence 5679999999999999955 6775 5899999986 778887765432 345689999999999987778999999
Q ss_pred echhhhhcCh-hhHHHHHHHHHHhcccCcEEE
Q 024100 236 VQWCIGHLTD-DDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 236 s~~vl~hl~d-~~~~~~l~~~~r~LkpgG~li 266 (272)
+.+..+++.. ..+..++..+.++|+|||.++
T Consensus 111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 9888877765 345689999999999999986
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.6e-14 Score=127.69 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=91.1
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCC---CCCCCceE
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMA---PDMHKATN 215 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~---~~~~~~v~ 215 (272)
.++..++... ++.++.+|||+|||+|.++..++... +..+.|||.|+.|++.|+++....+... .....+++
T Consensus 138 ~~~~~~~~~~----~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~ 213 (328)
T d1nw3a_ 138 DLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 213 (328)
T ss_dssp HHHHHHHHHS----CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHHHHc----CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence 3455555432 36788899999999999999885333 3479999999999999988764321100 01245799
Q ss_pred EEEeCCCCCCCCCCc--ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 216 FFCVPLQDFTPETGR--YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 216 ~~~~d~~~~~~~~~~--fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
|+++|+.+.++.+.. +|+|+++.. .|. +++...|+++.+.|||||.||..++|
T Consensus 214 ~~~gd~~~~~~~~~~~~advi~~~~~-~f~--~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 214 LERGDFLSEEWRERIANTSVIFVNNF-AFG--PEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp EEECCTTSHHHHHHHHHCSEEEECCT-TTC--HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred EEECcccccccccccCcceEEEEcce-ecc--hHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 999999887654433 467777554 353 55569999999999999999988765
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.47 E-value=7e-14 Score=122.16 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=84.7
Q ss_pred cCCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 154 RNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
++.++.+|||+|||+|.+|..|+... ..+|+++|.++.+++.|++++... ....++++...|+.+..+ +++|
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~-----~~~~nv~~~~~Di~~~~~-~~~f 155 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF-----YDIGNVRTSRSDIADFIS-DQMY 155 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-----SCCTTEEEECSCTTTCCC-SCCE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-----cCCCceEEEEeeeecccc-ccee
Confidence 47789999999999999999885332 347999999999999999998643 235789999999988743 4689
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|++ +++++. .++.++.+.|||||.+++.
T Consensus 156 D~V~l-----d~p~p~--~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 156 DAVIA-----DIPDPW--NHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEE
T ss_pred eeeee-----cCCchH--HHHHHHHHhcCCCceEEEE
Confidence 99986 466776 8999999999999999864
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.47 E-value=5.8e-14 Score=119.12 Aligned_cols=103 Identities=12% Similarity=0.225 Sum_probs=83.1
Q ss_pred CeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcceee
Q 024100 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fDlI 234 (272)
..|||||||+|..+..+ ++.++ .++|+|+++.++..|.++.... ...|+.++++|+..+. ++++++|.|
T Consensus 31 PlvLeIGcG~G~~~~~l-A~~~p~~~~iGiD~~~~~i~~a~~~~~~~------~l~Nv~~~~~Da~~l~~~~~~~~~d~v 103 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGM-AKQNPDINYIGIELFKSVIVTAVQKVKDS------EAQNVKLLNIDADTLTDVFEPGEVKRV 103 (204)
T ss_dssp CEEEEECCTTSHHHHHH-HHHCTTSEEEEECSCHHHHHHHHHHHHHS------CCSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred ceEEEEEecCcHHHHHH-HHhCCCCcEEEeecchHHHHHHHHHHHHH------hccCchhcccchhhhhcccCchhhhcc
Confidence 37999999999999988 56654 6899999999999999887542 4568999999987653 466899999
Q ss_pred EechhhhhcChhhH------HHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDF------VSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~------~~~l~~~~r~LkpgG~liv~ 268 (272)
++.+...|...... ..+|+.+.++|||||.|++.
T Consensus 104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 99888765433211 37999999999999988764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.46 E-value=6.5e-14 Score=120.51 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=80.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|++|.. +++...+|+++|.++.+++.|++++. ...++.++.+|.....++.++||+|
T Consensus 68 l~~g~~VLdIG~GsGy~ta~-La~l~~~V~aiE~~~~~~~~A~~~~~--------~~~nv~~~~~d~~~g~~~~~pfD~I 138 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTAL-IAEIVDKVVSVEINEKMYNYASKLLS--------YYNNIKLILGDGTLGYEEEKPYDRV 138 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHH-HHHHSSEEEEEESCHHHHHHHHHHHT--------TCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred hcccceEEEecCCCCHHHHH-HHHHhcccccccccHHHHHHHHHHHh--------cccccccccCchhhcchhhhhHHHH
Confidence 67888999999999999984 47889999999999999999999874 2468999999986644455789999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++..++.++++. +.+.|+|||++|+
T Consensus 139 iv~~a~~~ip~~--------l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 139 VVWATAPTLLCK--------PYEQLKEGGIMIL 163 (224)
T ss_dssp EESSBBSSCCHH--------HHHTEEEEEEEEE
T ss_pred HhhcchhhhhHH--------HHHhcCCCCEEEE
Confidence 999998887542 4578999999876
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.5e-13 Score=120.34 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
.++.+|||||||+|.++..+ ++.+ .+|+++|.|+.|+..++.... .....++.++++++++++.+..+||+|
T Consensus 34 ~~~~~VLDiGcG~G~lsl~a-a~~Ga~~V~aid~s~~~~~a~~~~~~------~~~~~~i~~~~~~~~~l~~~~~~~D~I 106 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFA-AKAGAKKVLGVDQSEILYQAMDIIRL------NKLEDTITLIKGKIEEVHLPVEKVDVI 106 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHH-HHTTCSEEEEEESSTHHHHHHHHHHH------TTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred CCcCEEEEECCCCCHHHHHH-HHcCCCEEEEEeCHHHHHHHHHHHHH------hCCCccceEEEeeHHHhcCccccceEE
Confidence 45679999999999999966 6776 489999999988765443321 124578999999999998777899999
Q ss_pred EechhhhhcChhh-HHHHHHHHHHhcccCcEEE
Q 024100 235 WVQWCIGHLTDDD-FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 235 vs~~vl~hl~d~~-~~~~l~~~~r~LkpgG~li 266 (272)
++.+..+++..+. +..++..+.+.|+|||.++
T Consensus 107 vse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 107 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 9998887776553 4577777889999999986
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=1.9e-13 Score=122.66 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=82.9
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||||||+|.++..+ ++.+ .+|+++|.|+.+ ..+++.... +....++.++++++.+++.+.++||+|+
T Consensus 33 ~~~~VLDiGcG~G~ls~~a-a~~Ga~~V~avd~s~~~-~~a~~~~~~-----n~~~~~v~~~~~~~~~~~~~~~~~D~iv 105 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFA-AKAGARKVIGIECSSIS-DYAVKIVKA-----NKLDHVVTIIKGKVEEVELPVEKVDIII 105 (316)
T ss_dssp TTCEEEEETCTTSHHHHHH-HHTTCSEEEEEECSTTH-HHHHHHHHH-----TTCTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred CcCEEEEEecCCcHHHHHH-HHhCCCEEEEEcCcHHH-hhhhhHHHH-----hCCccccceEeccHHHcccccceeEEEe
Confidence 4668999999999999955 6776 479999999865 555554422 1235679999999999987778999999
Q ss_pred echhhhhcChh-hHHHHHHHHHHhcccCcEEE
Q 024100 236 VQWCIGHLTDD-DFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 236 s~~vl~hl~d~-~~~~~l~~~~r~LkpgG~li 266 (272)
+.+..+++..+ .+..++..+.+.|+|||.+|
T Consensus 106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 99888777654 46789999999999999986
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=6.1e-14 Score=120.50 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=81.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||||||+|+.|.-| ++. ...|+++|.+++|++.|++++...... .....++.+.++|.....++.++|
T Consensus 74 l~~g~~VLdiG~GsGy~ta~l-a~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~-~~~~~~~~~~~gD~~~~~~~~~~f 151 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACF-ARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPY 151 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHH-HHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-HHHTSSEEEEESCGGGCCGGGCCE
T ss_pred cCCCCeEEEecCCCCHHHHHH-HHHhCCCceEEEEcCCHHHHHHHHHhccccCcc-cccccceEEEEeecccccchhhhh
Confidence 467889999999999999855 564 348999999999999999987532100 012357889999987766666799
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++..+++|+++ .+.+.|+|||.+|+
T Consensus 152 D~I~~~~~~~~ip~--------~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 152 DAIHVGAAAPVVPQ--------ALIDQLKPGGRLIL 179 (224)
T ss_dssp EEEEECSBBSSCCH--------HHHHTEEEEEEEEE
T ss_pred hhhhhhcchhhcCH--------HHHhhcCCCcEEEE
Confidence 99999999988754 35788999999876
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.39 E-value=7.9e-13 Score=111.97 Aligned_cols=103 Identities=15% Similarity=0.210 Sum_probs=79.6
Q ss_pred CeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcceee
Q 024100 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fDlI 234 (272)
..|||||||+|.++..+ |+.++ .++|+|+++.++..|.++.... ...|+.++.+|+.++. ++++++|.|
T Consensus 33 plvLdIGcG~G~~~~~l-A~~~p~~~~iGid~~~~~v~~a~~~~~~~------~l~Ni~~~~~da~~l~~~~~~~~~~~i 105 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGM-AKQNPDINYIGIDIQKSVLSYALDKVLEV------GVPNIKLLWVDGSDLTDYFEDGEIDRL 105 (204)
T ss_dssp CEEEEESCTTSHHHHHH-HHHCTTSEEEEEESCHHHHHHHHHHHHHH------CCSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CeEEEEeccCCHHHHHH-HHHCCCCceEEEeccHHHHHHHHHhhhhh------ccccceeeecCHHHHhhhccCCceehh
Confidence 37999999999999988 56654 6799999999999998877543 4569999999998764 456799999
Q ss_pred EechhhhhcChhh------HHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDD------FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~------~~~~l~~~~r~LkpgG~liv~ 268 (272)
++++.--+..... -..+|+.+.++|+|||.+++.
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 8766532211110 137999999999999998663
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=2.2e-12 Score=110.99 Aligned_cols=107 Identities=12% Similarity=0.043 Sum_probs=81.5
Q ss_pred cCCCccCCCCCeeeEeecccchHHHHHHHhc-C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-
Q 024100 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRY-F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF- 224 (272)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~-~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~- 224 (272)
.+...++.++.+|||+|||+|.++..| ++. + ..|+++|+|+.|++.++++... ..++..+..|....
T Consensus 65 ~l~~l~i~pG~~VLDlGaGsG~~t~~l-a~~VG~~G~V~aVD~s~~~l~~a~~~a~~--------~~~~~~i~~d~~~~~ 135 (227)
T d1g8aa_ 65 GLKNFPIKPGKSVLYLGIASGTTASHV-SDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPE 135 (227)
T ss_dssp TCCCCCCCTTCEEEEETTTSTTHHHHH-HHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGG
T ss_pred cccccccCCCCEEEEeccCCCHHHHHH-HHHhCCCCEEEEEeCcHHHHHHHHHHHHh--------cCCceEEEEECCCcc
Confidence 344445788999999999999999988 454 3 4899999999999999998742 35677778877543
Q ss_pred --CCCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 225 --TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 225 --~~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
......+|+|++.. .|..+.+ .+++++++.|+|||.+++.
T Consensus 136 ~~~~~~~~vD~i~~d~--~~~~~~~--~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 136 EYRALVPKVDVIFEDV--AQPTQAK--ILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp GGTTTCCCEEEEEECC--CSTTHHH--HHHHHHHHHEEEEEEEEEE
T ss_pred cccccccceEEEEEEc--cccchHH--HHHHHHHHhcccCCeEEEE
Confidence 22335788887643 3443444 8999999999999998764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=6.7e-13 Score=123.20 Aligned_cols=141 Identities=14% Similarity=0.047 Sum_probs=90.8
Q ss_pred ccCCCCCcchhh-hhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhcc
Q 024100 124 LGGFGNVNEVDI-KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 124 lggy~~~s~~d~-~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~ 201 (272)
+..|..++..-+ .-...++.+++.+. ++.++.++||+|||+|.++..+++... .+|+|||.|+.|++.|+++..
T Consensus 186 L~~Y~~fs~~vYGEl~~~~i~~Il~~l----~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~ 261 (406)
T d1u2za_ 186 LKHYKAFSNYVYGELLPNFLSDVYQQC----QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE 261 (406)
T ss_dssp GCSCCSSGGGCCCCBCHHHHHHHHHHT----TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred hcccCCCCCCccccCCHHHHHHHHHHh----CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence 445554443332 22344566666543 367889999999999999998854443 489999999999999998764
Q ss_pred ccCCC---CCCCCCceEE-EEeCCCCCCCCC---CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 202 PENHM---APDMHKATNF-FCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 202 ~~~~~---~~~~~~~v~~-~~~d~~~~~~~~---~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
..+.. -........+ ..+++...++.+ ..+|+|+++.. +| ++++..+|+++.+.|||||.||..+++
T Consensus 262 e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~-~f--~~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 262 ELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNF-LF--DEDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp HHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCT-TC--CHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred HHhhhhhhhccccccceeeeeechhhccccccccccceEEEEecc-cC--chHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 32100 0001122233 233333222111 25778887653 35 456669999999999999999998875
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=1.7e-12 Score=114.12 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=81.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-C--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.++.+|||+|||+|.+|..|+ +. + .+|+++|.++.|++.|++++... ....++.+...|+.... +...|
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA-~~~~~~G~V~~vD~~~~~~~~A~~~~~~~-----g~~~~v~~~~~d~~~~~-~~~~~ 173 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLA-RAVGSSGKVFAYEKREEFAKLAESNLTKW-----GLIERVTIKVRDISEGF-DEKDV 173 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHTTTTCEEEEECCCHHHHHHHHHHHHHT-----TCGGGEEEECCCGGGCC-SCCSE
T ss_pred CCCCCEEEECCCCCCHHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHHHHHh-----ccccCcEEEeccccccc-cccce
Confidence 6789999999999999999884 54 2 48999999999999999998654 23467888888864432 33578
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|.|+ +|++++. .++.++.+.|||||.+++.
T Consensus 174 D~V~-----~d~p~p~--~~l~~~~~~LKpGG~lv~~ 203 (266)
T d1o54a_ 174 DALF-----LDVPDPW--NYIDKCWEALKGGGRFATV 203 (266)
T ss_dssp EEEE-----ECCSCGG--GTHHHHHHHEEEEEEEEEE
T ss_pred eeeE-----ecCCCHH--HHHHHHHhhcCCCCEEEEE
Confidence 8875 4788887 8999999999999999864
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.8e-12 Score=117.10 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=81.5
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCC-----CCCCCCCceEEEEeCCCCCCC-
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENH-----MAPDMHKATNFFCVPLQDFTP- 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~-----~~~~~~~~v~~~~~d~~~~~~- 226 (272)
+.++.+|||+|||+|.+|..|+...++ +|+++|.+++|++.|++++..... .......+++++..|+.++.+
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 678999999999999999988533343 799999999999999998754210 011235689999999987632
Q ss_pred -CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 -ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 -~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....||.|+. +++++. .++.++.++|||||.+++.
T Consensus 176 ~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 176 IKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp -----EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEE
T ss_pred cCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEE
Confidence 3468999975 567776 7999999999999998763
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.31 E-value=2.2e-12 Score=110.10 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=81.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCccee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDl 233 (272)
+.++.+|||||||+|+.|. ++++. ..+|+++|.++.+++.|++++... ...|+.++++|..+-.+..++||.
T Consensus 76 l~~g~~VLeIGsGsGY~ta-ila~l~g~~V~~ie~~~~l~~~a~~~l~~~------g~~nv~~~~gd~~~g~~~~~pfD~ 148 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAA-LISEIVKTDVYTIERIPELVEFAKRNLERA------GVKNVHVILGDGSKGFPPKAPYDV 148 (215)
T ss_dssp CCTTCCEEEECCTTSHHHH-HHHHHHCSCEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCGGGCCEEE
T ss_pred cCccceEEEecCCCChhHH-HHHHhhCceeEEEeccHHHHHHHHHHHHHc------CCceeEEEECccccCCcccCccee
Confidence 6788899999999999999 44666 557999999999999999998653 457999999998775555679999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|++..++.++++. +.+.|+|||+++.
T Consensus 149 Iiv~~a~~~ip~~--------l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 149 IIVTAGAPKIPEP--------LIEQLKIGGKLII 174 (215)
T ss_dssp EEECSBBSSCCHH--------HHHTEEEEEEEEE
T ss_pred EEeecccccCCHH--------HHHhcCCCCEEEE
Confidence 9999999887543 4567999999875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.24 E-value=8.7e-12 Score=108.17 Aligned_cols=100 Identities=10% Similarity=0.176 Sum_probs=78.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
.....+|||||||+|.++..++ +.+| ++++.|. |..++.+ ....++++..+|+.+.. + ..|
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~vi~~~------------~~~~ri~~~~gd~~~~~--p-~~D 141 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELII-SKYPLIKGINFDL-PQVIENA------------PPLSGIEHVGGDMFASV--P-QGD 141 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEEC-HHHHTTC------------CCCTTEEEEECCTTTCC--C-CEE
T ss_pred ccCCcEEEEecCCCcHHHHHHH-HHCCCCeEEEecc-hhhhhcc------------CCCCCeEEecCCccccc--c-cce
Confidence 3456799999999999999885 6667 4566675 3333211 13468999999986532 2 469
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+|++.++||+.+|++...+|++++++|+|||.+++.|.+
T Consensus 142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 999999999999999999999999999999999998854
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=7.1e-12 Score=107.39 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=79.0
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--------CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--------~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~ 226 (272)
+.++.+|||||||+|++|.-| ++.. .+|+++|.++++++.|++++...... .....++.+..+|..+..+
T Consensus 78 l~~g~~VLeIGtGsGY~ta~l-a~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~-~~~~~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACF-YRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYP 155 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHH-HHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-HHHHTSEEEEESCGGGCCG
T ss_pred cCCCCeEEEecCCCCHHHHHH-HHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh-hcCccEEEEEecccccccc
Confidence 567889999999999999844 5542 37999999999999999876321000 0013589999999877655
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+.++||.|++..++.++++ .+.+.|+|||++|.
T Consensus 156 ~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 156 PNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIV 188 (223)
T ss_dssp GGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEE
T ss_pred cccceeeEEEEeechhchH--------HHHHhcCCCcEEEE
Confidence 5679999999999988753 25689999999875
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=3.7e-11 Score=105.95 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=79.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+.+|||+|||+|.++..++... ...|+++|+|+.+++.|++++... ...+++|+++|+.+.. ..++||+|
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~------~~~~v~~~~~d~~~~~-~~~~fDlI 179 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL------AIKNIHILQSDWFSAL-AGQQFAMI 179 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCSTTGGG-TTCCEEEE
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh------Ccccceeeeccccccc-CCCceeEE
Confidence 356689999999999999885333 348999999999999999998543 2347999999987643 33689999
Q ss_pred Eechh-------------hhhcCh----------hhHHHHHHHHHHhcccCcEEEE
Q 024100 235 WVQWC-------------IGHLTD----------DDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 235 vs~~v-------------l~hl~d----------~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|+-. +.|-+. ..+.+++++..+.|+|||.+++
T Consensus 180 vsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 180 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 99732 111110 1245788899999999999876
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.14 E-value=3e-11 Score=97.07 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=78.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fDlIv 235 (272)
++.+|||+|||+|.++.+.+.+...+|++||.++.+++.+++++... ....+++++++|+..+ ....++||+|+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~-----~~~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT-----KAENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT-----TCGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhc-----ccccchhhhcccccccccccccccceeE
Confidence 46799999999999999886555569999999999999999998643 2345799999998764 23346899999
Q ss_pred echhhhhcChhhHHHHHHHHH--HhcccCcEEEE
Q 024100 236 VQWCIGHLTDDDFVSFFKRAK--ENIARSGTFLL 267 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~--r~LkpgG~liv 267 (272)
+.-.... ......+..+. +.|+|||.+++
T Consensus 89 ~DPPy~~---~~~~~~l~~i~~~~~L~~~g~iii 119 (152)
T d2esra1 89 LDPPYAK---ETIVATIEALAAKNLLSEQVMVVC 119 (152)
T ss_dssp ECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred echhhcc---chHHHHHHHHHHCCCcCCCeEEEE
Confidence 8744211 22345666554 46999999876
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.14 E-value=1.4e-10 Score=96.84 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=77.7
Q ss_pred CCCCeeeEeecccchHHHHH---HHhc----C--CcEEEEeCCHHHHHHHHHhccccCCC--------------CC----
Q 024100 156 NQHLVALDCGSGIGRITKNL---LIRY----F--NEVDLLEPVSHFLDAARESLAPENHM--------------AP---- 208 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~L---La~~----~--~~v~~vD~S~~mld~A~~~l~~~~~~--------------~~---- 208 (272)
.++.+|+++|||+|.-.-.| +... . -++.++|+|+.+++.|++-.-..... ..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 35669999999999743222 1221 1 15899999999999998532111000 00
Q ss_pred -------CCCCceEEEEeCCCCCC-CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 209 -------DMHKATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 209 -------~~~~~v~~~~~d~~~~~-~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.....+.+...+..... +..+.||+|+|.++|.|++++...++++++.+.|+|||++++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00122455556555432 2346899999999999999998889999999999999998863
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.13 E-value=4.8e-11 Score=103.38 Aligned_cols=98 Identities=14% Similarity=0.257 Sum_probs=77.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
...+|||||||+|.++..++ +.++ ++++.|.. ..++.+ ....+++|+.+|+.+- .+ .+|++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~v~Dlp-~vi~~~------------~~~~rv~~~~gD~f~~--~p-~aD~~ 142 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIIC-ETFPKLKCIVFDRP-QVVENL------------SGSNNLTYVGGDMFTS--IP-NADAV 142 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHH-HHCTTCEEEEEECH-HHHTTC------------CCBTTEEEEECCTTTC--CC-CCSEE
T ss_pred CceEEEEecCCccHHHHHHH-HhCCCCeEEEecCH-HHHHhC------------cccCceEEEecCcccC--CC-CCcEE
Confidence 34589999999999999885 6665 66777863 333322 1346899999998653 22 58999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccC---cEEEEecCC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARS---GTFLLSHSL 271 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~Lkpg---G~liv~E~~ 271 (272)
++.++||+.+|++..++|+++++.|+|| |.+++.|.+
T Consensus 143 ~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 143 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred EEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 9999999999999999999999999998 778887754
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.12 E-value=8.7e-11 Score=102.66 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=79.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.++.+|||+|||+|.++..++.....+|+++|.|+.+++.+++++..- +...+++++++|..++... +.||.|+
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n-----~l~~~v~~~~~D~~~~~~~-~~~D~Ii 179 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN-----KVEDRMSAYNMDNRDFPGE-NIADRIL 179 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT-----TCTTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHh-----CCCceEEEEEcchHHhccC-CCCCEEE
Confidence 467799999999999999885333459999999999999999998542 2345799999999988654 6899999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++.. +... .++....+.|++||.+.+
T Consensus 180 ~~~p----~~~~--~~l~~a~~~l~~gG~lh~ 205 (260)
T d2frna1 180 MGYV----VRTH--EFIPKALSIAKDGAIIHY 205 (260)
T ss_dssp ECCC----SSGG--GGHHHHHHHEEEEEEEEE
T ss_pred ECCC----CchH--HHHHHHHhhcCCCCEEEE
Confidence 8643 1233 578888899999998843
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.06 E-value=4.6e-11 Score=107.25 Aligned_cols=105 Identities=18% Similarity=0.090 Sum_probs=80.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC----CCCCCcce
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYD 232 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD 232 (272)
++.+|||++||+|.++..+ +....+|+++|.|+.+++.|++++... ...+++++++|..++ ....++||
T Consensus 145 ~g~rVLDl~~gtG~~s~~~-a~g~~~V~~vD~s~~al~~a~~n~~~n------gl~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHL-ALGFREVVAVDSSAEALRRAEENARLN------GLGNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CEEEEEEETCTTTHHHHHH-HHHEEEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeeeccCCCCcHHHHHH-HhcCCcEEeecchHHHHHHHHHHHHHc------CCCCcceeeccHHHHhhhhHhhhcCCC
Confidence 5679999999999999987 577789999999999999999998542 335789999998654 22346899
Q ss_pred eeEechhhhhcC-------hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLT-------DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~-------d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++.-.-.... -....+++..+.++|+|||.++..
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~ 260 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA 260 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 999753211111 123457888999999999998764
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=1.4e-10 Score=104.30 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=79.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 230 (272)
.++.+|||+|||+|.++..++ ..+ .+|+++|.|+.+++.|++++... +...+++|+++|+.++. ....+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a-~~ga~~V~~vD~s~~al~~a~~N~~~n-----gl~~~~~~~~~d~~~~~~~~~~~~~~ 217 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAA-IAGADEVIGIDKSPRAIETAKENAKLN-----GVEDRMKFIVGSAFEEMEKLQKKGEK 217 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCCeeecccCcccchhhhhh-hcCCcEEEeecCCHHHHHHHHHHHHHc-----CCCccceeeechhhhhhHHHHhccCC
Confidence 356799999999999999885 554 58999999999999999998542 23457899999986531 13458
Q ss_pred ceeeEechhhhhcCh-------hhHHHHHHHHHHhcccCcEEEEe
Q 024100 231 YDVIWVQWCIGHLTD-------DDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 231 fDlIvs~~vl~hl~d-------~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
||+|++.-...--.. ..+.+++..+.++|+|||.++..
T Consensus 218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~ 262 (324)
T d2as0a2 218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 262 (324)
T ss_dssp EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999997433111111 12446788888999999998764
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.02 E-value=2.2e-10 Score=96.24 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
.+.+|||+|||+|.++..+ +..+ ..|++||.++.+++.|++++ .+++|.++|+.+++ ++||+|+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a-~~~ga~~V~~vDid~~a~~~ar~N~-----------~~~~~~~~D~~~l~---~~fD~Vi 112 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGS-YLLGAESVTAFDIDPDAIETAKRNC-----------GGVNFMVADVSEIS---GKYDTWI 112 (197)
T ss_dssp BTSEEEEETCTTCHHHHHH-HHTTBSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCGGGCC---CCEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHH-HHcCCCcccccccCHHHHHHHHHcc-----------ccccEEEEehhhcC---CcceEEE
Confidence 4679999999999999866 4554 57999999999999999986 36789999997763 6899999
Q ss_pred echh
Q 024100 236 VQWC 239 (272)
Q Consensus 236 s~~v 239 (272)
++-.
T Consensus 113 ~NPP 116 (197)
T d1ne2a_ 113 MNPP 116 (197)
T ss_dssp ECCC
T ss_pred eCcc
Confidence 9843
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.00 E-value=1.3e-10 Score=100.20 Aligned_cols=98 Identities=12% Similarity=0.271 Sum_probs=77.3
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
...+|||||||+|.++..++ +.++ +++++|..+. ++.+ ....++.+..+|+.+-. + ..|++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~v~Dlp~v-i~~~------------~~~~r~~~~~~d~~~~~-P--~ad~~ 143 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIV-SKYPTIKGINFDLPHV-IEDA------------PSYPGVEHVGGDMFVSI-P--KADAV 143 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHH-HHCTTSEEEEEECTTT-TTTC------------CCCTTEEEEECCTTTCC-C--CCSCE
T ss_pred CCcEEEEecCCCcHHHHHHH-HHCCCCeEEEcccHHh-hhhc------------ccCCceEEecccccccC-C--CcceE
Confidence 35689999999999999995 6666 6677785432 2111 13468999999986532 2 36888
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
++.+++|+.++++...+|++++++|+|||.+++.|.+
T Consensus 144 ~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 144 FMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp ECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred EEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 9999999999999999999999999999999888754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.98 E-value=8.5e-10 Score=92.56 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=59.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|||+|||+|.++..++ ..+ ..|+++|.|+.+++.|++++.. .....+++++|...+ +++||+|+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~N~~~-------~~~~~~~~~~d~~~~---~~~fD~Vi 114 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGAL-LLGAKEVICVEVDKEAVDVLIENLGE-------FKGKFKVFIGDVSEF---NSRVDIVI 114 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHTGG-------GTTSEEEEESCGGGC---CCCCSEEE
T ss_pred CCCEEEECcCcchHHHHHHH-HcCCCEEEEEcCcHHHHHHHHHHHHH-------cCCCceEEECchhhh---CCcCcEEE
Confidence 56799999999999999775 554 5899999999999999999754 234678999998776 35899999
Q ss_pred echhh
Q 024100 236 VQWCI 240 (272)
Q Consensus 236 s~~vl 240 (272)
++-.+
T Consensus 115 ~nPP~ 119 (201)
T d1wy7a1 115 MNPPF 119 (201)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 87544
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.98 E-value=4.3e-10 Score=100.51 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=86.4
Q ss_pred hhhhHHHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCc
Q 024100 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (272)
Q Consensus 134 d~~~s~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~ 213 (272)
|....+.++...+.. ..++.+|||++||||.++..+ +..+.+|+.||.|+.+++.|++++..-. -...+
T Consensus 115 dqr~nr~~~~~~~~~------~~~~~rVLdlf~~tG~~sl~a-a~~GA~V~~VD~s~~al~~a~~N~~ln~----~~~~~ 183 (309)
T d2igta1 115 EQIVHWEWLKNAVET------ADRPLKVLNLFGYTGVASLVA-AAAGAEVTHVDASKKAIGWAKENQVLAG----LEQAP 183 (309)
T ss_dssp GGHHHHHHHHHHHHH------SSSCCEEEEETCTTCHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHHHHT----CTTSC
T ss_pred chhHHHHHHHHHHhh------ccCCCeEEEecCCCcHHHHHH-HhCCCeEEEEeChHHHHHHHHHhhhhhc----ccCCc
Confidence 445566777776653 345679999999999999977 5778899999999999999999875311 12346
Q ss_pred eEEEEeCCCCCC----CCCCcceeeEec---hhhh----hcC-hhhHHHHHHHHHHhcccCcEEE
Q 024100 214 TNFFCVPLQDFT----PETGRYDVIWVQ---WCIG----HLT-DDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 214 v~~~~~d~~~~~----~~~~~fDlIvs~---~vl~----hl~-d~~~~~~l~~~~r~LkpgG~li 266 (272)
++|+++|+.++- ....+||+|++. +.-. ... ...+..++..+.++|+|||.++
T Consensus 184 ~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l 248 (309)
T d2igta1 184 IRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 248 (309)
T ss_dssp EEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred EEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 899999986652 123589999973 2110 000 1234467788899999998544
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=4.9e-10 Score=92.61 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=78.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fDlIv 235 (272)
.+.+|||++||+|.++.+.+++....|+.||.++..++.+++++... ...+..+++.|+..+. ....+||+|+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~------~~~~~~ii~~d~~~~l~~~~~~fDlIf 116 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL------KAGNARVVNSNAMSFLAQKGTPHNIVF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhc------cccceeeeeecccccccccccccCEEE
Confidence 35689999999999999987666779999999999999999998543 3457888999876652 2346899999
Q ss_pred echhhhhcChhhHHHHHHHHHH--hcccCcEEEE
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKE--NIARSGTFLL 267 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r--~LkpgG~liv 267 (272)
+.--... .....++..+.+ .|+++|.+++
T Consensus 117 ~DPPY~~---~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 117 VDPPFRR---GLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp ECCSSST---TTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EcCcccc---chHHHHHHHHHHCCCCCCCeEEEE
Confidence 9755322 223467777765 6999998886
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.93 E-value=3.7e-10 Score=92.45 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=68.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC--CCCCCCCccee
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ--DFTPETGRYDV 233 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fDl 233 (272)
.++.+|||+|||+|.++.+++ ..+.+|+++|.|+.+++.+++++.... ...++...++|.. .......+||+
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~-~~ga~vv~vD~~~~a~~~~~~N~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~fD~ 113 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAA-SEGWEAVLVEKDPEAVRLLKENVRRTG-----LGARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHH-HTTCEEEEECCCHHHHHHHHHHHHHHT-----CCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEeccccchhhhhhh-hccchhhhcccCHHHHhhhhHHHHhhc-----cccceeeeehhcccccccccCCccce
Confidence 467799999999999999874 677899999999999999999975431 1223333333321 11123358999
Q ss_pred eEechhhhhcChhhHHHHHHHH--HHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRA--KENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~--~r~LkpgG~liv~ 268 (272)
|++.=-++. ... +.+.++ ...|+|||.+++.
T Consensus 114 If~DPPY~~-~~~---~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 114 AFMAPPYAM-DLA---ALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp EEECCCTTS-CTT---HHHHHHHHHTCEEEEEEEEEE
T ss_pred eEEcccccc-CHH---HHHHHHHHcCCcCCCeEEEEE
Confidence 998644322 112 333333 2579999988763
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=9.8e-10 Score=93.11 Aligned_cols=115 Identities=9% Similarity=0.120 Sum_probs=82.0
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~ 215 (272)
..+|..++.. .++.+|||+|||+|..|..++ +. ..+++.+|.++.+++.|++++..+ +...+++
T Consensus 45 G~lL~~lv~~-------~kpk~ILEiGt~~G~Sti~la-~al~~~g~v~sid~~~~~~~~a~~~~~~~-----gl~~~i~ 111 (214)
T d2cl5a1 45 GQIMDAVIRE-------YSPSLVLELGAYCGYSAVRMA-RLLQPGARLLTMEMNPDYAAITQQMLNFA-----GLQDKVT 111 (214)
T ss_dssp HHHHHHHHHH-------HCCSEEEEECCTTSHHHHHHH-TTCCTTCEEEEEESCHHHHHHHHHHHHHH-----TCGGGEE
T ss_pred HHHHHHHHHh-------hCCCEEEEEccCchhHHHHHH-HhCCCccEEEEEeccHHHHHHHHHHHHHc-----CCCccce
Confidence 3567777663 345699999999999999874 53 458999999999999999988654 2346799
Q ss_pred EEEeCCCCCC------CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 216 FFCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 216 ~~~~d~~~~~------~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
++.+|..+.- ...++||+|++...-.. ......+.++.+.|+|||.|+ .|+
T Consensus 112 l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~---~~~~~~l~~~~~lLkpGGvIv-~Dd 168 (214)
T d2cl5a1 112 ILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDR---YLPDTLLLEKCGLLRKGTVLL-ADN 168 (214)
T ss_dssp EEESCHHHHGGGHHHHSCCCCEEEEEECSCGGG---HHHHHHHHHHTTCEEEEEEEE-ESC
T ss_pred eeeccccccccchhhcccccccceeeecccccc---cccHHHHHHHhCccCCCcEEE-EeC
Confidence 9999986542 12357999998633111 111135667778999999755 444
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=1.2e-09 Score=91.24 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=80.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 228 (272)
..+++.+||++||+|..|..++... ...|+++|.++.|++.|++++... ..++.++++++.++. ...
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~~~~~~~~~~~~ 93 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGI 93 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHhhHHHHHHHcCC
Confidence 4577899999999999999997553 458999999999999999998542 457999999886642 223
Q ss_pred CcceeeEechh--hhhcChh-----hHHHHHHHHHHhcccCcEEEEec
Q 024100 229 GRYDVIWVQWC--IGHLTDD-----DFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 229 ~~fDlIvs~~v--l~hl~d~-----~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++||.|+.... -+++.++ ....+|..+.++|+|||.+++..
T Consensus 94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 58998874321 2222221 23478888999999999987653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.90 E-value=8.2e-10 Score=97.14 Aligned_cols=112 Identities=14% Similarity=0.196 Sum_probs=80.8
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCC----CCCCCCceEEEEeCCCCCCCCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTPETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~----~~~~~~~v~~~~~d~~~~~~~~~~f 231 (272)
+.+.+||-+|+|.|..+..++.....+|++||+++.+++.|++.+...... .....++++++.+|...+--..++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 467799999999999999886444568999999999999999877432100 0113578999999987653344689
Q ss_pred eeeEechhhhhcChh-h--HHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDD-D--FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~-~--~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++...- ....+ . -.+|++.|++.|+|||.++..
T Consensus 151 DvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 151 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 999964321 11111 1 137999999999999998763
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=3e-09 Score=90.43 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc---CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceE
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~---~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~ 215 (272)
..||..+.. ...+.+|||+|||+|..|..++ .. ..+++.+|.++...+.|++++..+ +....++
T Consensus 48 g~lL~~L~~-------~~~~k~vLEiGt~~GyStl~~a-~al~~~g~i~tie~~~~~~~~A~~~~~~a-----g~~~~i~ 114 (219)
T d2avda1 48 AQLLANLAR-------LIQAKKALDLGTFTGYSALALA-LALPADGRVVTCEVDAQPPELGRPLWRQA-----EAEHKID 114 (219)
T ss_dssp HHHHHHHHH-------HTTCCEEEEECCTTSHHHHHHH-TTSCTTCEEEEEESCSHHHHHHHHHHHHT-----TCTTTEE
T ss_pred HHHHHHHHH-------ccCCCeEEEEechhhHHHHHHH-HhCCCCceEEEEeechhHHHHHHHHHHhc-----CccceEE
Confidence 456666654 2356799999999999999885 53 459999999999999999998754 2346799
Q ss_pred EEEeCCCCCC------CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 216 FFCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 216 ~~~~d~~~~~------~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
++.+|+.+.. ...++||+|+...-= ......+..+.+.|+|||.+++-+
T Consensus 115 ~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk-----~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 115 LRLKPALETLDELLAAGEAGTFDVAVVDADK-----ENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEESCHHHHHHHHHHTTCTTCEEEEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEeehhhcchhhhhhcccCCccEEEEeCCH-----HHHHHHHHHHHHHhcCCcEEEEeC
Confidence 9999874421 124689999986431 334578888999999999987743
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.80 E-value=3.2e-09 Score=87.66 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=79.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~f 231 (272)
.++.+|||++||+|.++.+.+++....|++||.++.+++.+++++...+ ...+++++++|+..+- ....+|
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~-----~~~~~~i~~~D~~~~l~~~~~~~~~f 114 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK-----EPEKFEVRKMDANRALEQFYEEKLQF 114 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT-----CGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhh-----cccccccccccchhhhhhhcccCCCc
Confidence 3577999999999999999976656689999999999999999885431 3457999999986541 123589
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHH--hcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKE--NIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r--~LkpgG~liv 267 (272)
|+|++.--... ......+..+.+ .|+++|.+++
T Consensus 115 DlIflDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 115 DLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp EEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ceEEechhhhh---hHHHHHHHHHHHCCCCCCCEEEEE
Confidence 99998754321 234467777754 6999998875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.79 E-value=1.9e-09 Score=96.53 Aligned_cols=109 Identities=9% Similarity=0.058 Sum_probs=79.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~f 231 (272)
.++.+|||++||+|.++..++......|++||.|+.+++.|++++..-+ -...+++|+++|+.++- ...++|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~----l~~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH----LDMANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT----CCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhc----ccCcceEEEEccHHHHHHHHHhhcCCC
Confidence 4567999999999999997743334479999999999999999975311 12357899999986542 133589
Q ss_pred eeeEechh---h--hhcC--hhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWC---I--GHLT--DDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~v---l--~hl~--d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++.-- - ..+. -.++.++++.+.++|+|||.++.+
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~ 262 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS 262 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 99997411 0 0111 123557899999999999999864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.77 E-value=1e-08 Score=87.98 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
+.++.+|||||||+|.+|..|+ +...+|++||.++.+++..++++. ...+++++++|+.+++++......|
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll-~~~~~v~avE~D~~l~~~l~~~~~--------~~~n~~i~~~D~l~~~~~~~~~~~v 89 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELV-QRCNFVTAIEIDHKLCKTTENKLV--------DHDNFQVLNKDILQFKFPKNQSYKI 89 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH-HHSSEEEEECSCHHHHHHHHHHTT--------TCCSEEEECCCGGGCCCCSSCCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHH-hCcCceEEEeeccchHHHHHHHhh--------cccchhhhhhhhhhcccccccccee
Confidence 5678899999999999999886 778899999999999999998874 3568999999999887654444456
Q ss_pred EechhhhhcChhhHHHH
Q 024100 235 WVQWCIGHLTDDDFVSF 251 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~ 251 (272)
+++--. +++.+-+..+
T Consensus 90 v~NLPY-nIss~il~~l 105 (235)
T d1qama_ 90 FGNIPY-NISTDIIRKI 105 (235)
T ss_dssp EEECCG-GGHHHHHHHH
T ss_pred eeeehh-hhhHHHHHHH
Confidence 666554 5554443333
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.77 E-value=3.9e-09 Score=94.28 Aligned_cols=107 Identities=14% Similarity=0.257 Sum_probs=79.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 232 (272)
+.+.+||.||.|.|..+..++ +. ..+|++||+++.+++.|++.+..... .....++++++.+|..++- ..+++||
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll-~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVL-KHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHT-TSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCcceEEEeCCCchHHHHHHH-hcCCcceEEEecCCHHHHHHHHhcCccccc-CccCCCceEEEEchHHHHhhhcCCccc
Confidence 456799999999999999886 44 45899999999999999998743210 0113568999999987752 2335899
Q ss_pred eeEechh--h------hhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 233 VIWVQWC--I------GHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 233 lIvs~~v--l------~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+|++... . .++-. .+|++.|++.|+|||.++.
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t---~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYT---VEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSS---HHHHHHHHHTEEEEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhh---HHHHHHHHHhcCCCceEEE
Confidence 9996431 1 11211 3699999999999999876
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=5.8e-08 Score=84.91 Aligned_cols=76 Identities=13% Similarity=0.006 Sum_probs=58.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC-CCCcceeeE
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fDlIv 235 (272)
...+++|+|||+|.++..++.....+|+++|.|+..++.|+++.... ....++.++..|+.+... ..++||+|+
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~-----~~~~~~~i~~~~~~~~~~~~~~~fDlIV 184 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH-----GVSDRFFVRKGEFLEPFKEKFASIEMIL 184 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT-----TCTTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHc-----CCCceeEEeecccccccccccCcccEEE
Confidence 34589999999999999774333558999999999999999998643 223467788888876533 236899999
Q ss_pred ec
Q 024100 236 VQ 237 (272)
Q Consensus 236 s~ 237 (272)
|+
T Consensus 185 sN 186 (271)
T d1nv8a_ 185 SN 186 (271)
T ss_dssp EC
T ss_pred Ec
Confidence 87
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.67 E-value=1.3e-08 Score=86.83 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=84.8
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEE
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~ 217 (272)
.||..++.. ..+.+|||+|+++|..|..++... ..+++.+|.++...+.|++++..+ +....++++
T Consensus 49 ~~L~~L~~~-------~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~-----g~~~~i~~~ 116 (227)
T d1susa1 49 QFLSMLLKL-------INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-----GVDHKIDFR 116 (227)
T ss_dssp HHHHHHHHH-------HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-----TCGGGEEEE
T ss_pred HHHHHHHHh-------cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh-----ccccceeee
Confidence 466666552 346699999999999999884322 458999999999999999998754 234689999
Q ss_pred EeCCCCCCC-------CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 218 CVPLQDFTP-------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 218 ~~d~~~~~~-------~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.++..+.-+ ..++||+|+.-.- + ......+..+.+.|+|||.+++-
T Consensus 117 ~g~a~~~L~~l~~~~~~~~~fD~iFiDa~--k---~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 117 EGPALPVLDEMIKDEKNHGSYDFIFVDAD--K---DNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp ESCHHHHHHHHHHCGGGTTCBSEEEECSC--S---TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred ehHHHHHHHHHHhccccCCceeEEEeccc--h---hhhHHHHHHHHhhcCCCcEEEEc
Confidence 999865421 2358999998643 2 33557888999999999988764
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.2e-07 Score=81.76 Aligned_cols=81 Identities=14% Similarity=0.031 Sum_probs=60.3
Q ss_pred CCCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------CCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~~~ 228 (272)
.+..++||+|||+|.++..|+.+. ..+++++|+|+.+++.|++++... ....++.++..+..... ...
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n-----~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-----NLSDLIKVVKVPQKTLLMDALKEESE 134 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTCSSTTTSTTCCS
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh-----CCCcceeeeeeccHHhhhhhhhhccc
Confidence 445699999999999999775443 459999999999999999998542 23456777776654422 123
Q ss_pred CcceeeEechhhh
Q 024100 229 GRYDVIWVQWCIG 241 (272)
Q Consensus 229 ~~fDlIvs~~vl~ 241 (272)
++||+|+|+--++
T Consensus 135 ~~fD~ivsNPPY~ 147 (250)
T d2h00a1 135 IIYDFCMCNPPFF 147 (250)
T ss_dssp CCBSEEEECCCCC
T ss_pred CceeEEEecCccc
Confidence 5899999986643
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.63 E-value=2.5e-09 Score=92.46 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=72.3
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+..+|||||||+|.+|..|+ +...+|++||.++.|++.+++++. ...+++++++|+.+++.+...++.|
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~-~~~~~v~aIE~D~~l~~~l~~~~~--------~~~n~~ii~~D~l~~~~~~~~~~~v 97 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLA-KISKQVTSIELDSHLFNLSSEKLK--------LNTRVTLIHQDILQFQFPNKQRYKI 97 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHH-HHSSEEEESSSSCSSSSSSSCTTT--------TCSEEEECCSCCTTTTCCCSSEEEE
T ss_pred CCCCCeEEEECCCccHHHHHHH-hhcCceeEeeecccchhhhhhhhh--------hccchhhhhhhhhccccccceeeeE
Confidence 4577899999999999999885 778899999999999988877663 3468999999999998776677778
Q ss_pred EechhhhhcChhhHHHHH
Q 024100 235 WVQWCIGHLTDDDFVSFF 252 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l 252 (272)
+++... |++.+-+..++
T Consensus 98 v~NLPY-~Ist~il~~~l 114 (245)
T d1yuba_ 98 VGNIPY-HLSTQIIKKVV 114 (245)
T ss_dssp EEECCS-SSCHHHHHHHH
T ss_pred eeeeeh-hhhHHHHHHHh
Confidence 877775 88777655555
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.60 E-value=3.2e-08 Score=87.57 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=79.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 232 (272)
+.+.+||-||.|.|..+..++ ++ ..+|++||+++.+++.|++.+..... .-..++++++.+|...+- -.+++||
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l-~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~~~~~yD 164 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVL-KHDSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFD 164 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHT-TSTTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCceEEEecCCchHHHHHHH-hcCCCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhcCCCCCC
Confidence 456799999999999999886 54 45899999999999999987643110 113578999999987653 2336899
Q ss_pred eeEechh------hhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWC------IGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~v------l~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++... ..++-. .+|++.|++.|+|||.++..
T Consensus 165 vIi~D~~dp~~~~~~~L~t---~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFT---EEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEEEEC----------CCS---HHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCcCchhhhcc---HHHHHHHHhhcCCCcEEEEe
Confidence 9996432 122222 36999999999999998763
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=7.4e-08 Score=84.29 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=80.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 232 (272)
+.+.+||-||.|.|..+..++ ++ ..++++||+++.+++.|++.+.... .....++++++.+|...+- -.+++||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l-~~~~~~~i~~VEID~~Vi~~a~~~~~~~~--~~~~d~r~~i~~~D~~~~l~~~~~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREIL-KHPSVKKATLVDIDGKVIEYSKKFLPSIA--GKLDDPRVDVQVDDGFMHIAKSENQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHT-TCTTCSEEEEEESCHHHHHHHHHHCHHHH--TTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCcceEEecCCCCcHHHHHHH-hcCCcceEEEecCCHHHHHHHHHhChhhc--ccccCCCeEEEechHHHHHhhcCCCCC
Confidence 456799999999999999886 54 4599999999999999999874211 1124678999999986642 2346899
Q ss_pred eeEechh-----hhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWC-----IGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~v-----l~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++-.. -.+|... +|++.|++.|+|||.++..
T Consensus 151 vIi~D~~~p~~~~~~L~t~---eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTK---GFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp EEEESCSSCCSCCCCCSTT---HHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcchhhccH---HHHHHHHhhcCCCceEEEe
Confidence 9996422 1123233 6999999999999998864
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.56 E-value=6.7e-08 Score=85.26 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=79.4
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC--CCCCcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 231 (272)
+.+.+||=+|.|.|.....++ +.. .++++||+++.+++.|++.+..... ....++++++.+|...+- ..+++|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l-~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~--~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVA-RHASIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCcceEEecCCchHHHHHHH-hcccceeeEEecCCHHHHHHHHHhchhhhc--cccCCCcEEEEccHHHHHhhccccCc
Confidence 466799999999999999885 553 4899999999999999987632110 123578999999976542 233589
Q ss_pred eeeEechh-----hhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWC-----IGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~v-----l~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|++-.. -.++-. .+|++.|++.|+|||.++..
T Consensus 156 DvIi~D~~dp~~~~~~L~t---~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFE---KPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEECCCCTTSGGGGGGS---HHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCCCCCcchhhCC---HHHHHHHHHhcCCCcEEEEe
Confidence 99995321 122222 26999999999999999864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.55 E-value=4.1e-08 Score=87.47 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=78.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 232 (272)
+.+.+||-||.|.|.++..++ ++. .+|++||+++.+++.|++.+.... ..-..++++++.+|...+- ...++||
T Consensus 105 ~~pk~VLIiGgG~G~~~rell-k~~~v~~v~~VEID~~Vv~~a~~~~~~~~--~~~~dprv~i~i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVL-KHESVEKVTMCEIDEMVIDVAKKFLPGMS--CGFSHPKLDLFCGDGFEFLKNHKNEFD 181 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHT-TCTTCCEEEEECSCHHHHHHHHHHCTTTS--GGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCCCeEEEeCCCchHHHHHHH-HcCCcceEEEEcccHHHHHHHHhhchhhc--cccCCCCeEEEEchHHHHHHhCCCCCC
Confidence 456799999999999999886 543 589999999999999999875321 0123578999999986652 2346899
Q ss_pred eeEechhhhhcChhh--HHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDD--FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~--~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++-..-..-+... -.+|++.|++.|+|||.++..
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 999643211101111 136999999999999999864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=6.6e-08 Score=85.09 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=78.6
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcce
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 232 (272)
+.+.+||-||.|.|..+..++ ++ ..++++||+++.+++.|++.+.... .....++++++.+|...+- ...++||
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l-~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~--~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVV-KHPSVESVVQCEIDEDVIQVSKKFLPGMA--IGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCHHHH--GGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred cCcCeEEEeCCCchHHHHHHH-HcCCcceeeeccCCHHHHHHHHhhchhhc--cccCCCCceEEEccHHHHHhcCCCCCC
Confidence 467799999999999999986 54 5699999999999999998874210 0113578999999976542 2336899
Q ss_pred eeEechh-----hhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWC-----IGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~v-----l~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+|++-.. ..++... +|++.|++.|+|||.++..
T Consensus 154 vIi~D~~~p~~~~~~L~t~---eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKE---SYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEEECC-----------C---HHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccH---HHHHHHHHhcCCCCeEEEe
Confidence 9996421 1122222 6999999999999998764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.46 E-value=2e-07 Score=82.58 Aligned_cols=103 Identities=11% Similarity=0.114 Sum_probs=73.1
Q ss_pred CCCCeeeEeecccchHHHHHHHhc----CC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY----FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG 229 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~----~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 229 (272)
.++.+|||.|||+|.+...++.+. .. .+.|+|+++.++..|+.++.. ......+.+.|.....+ .+
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~-------~~~~~~~~~~d~~~~~~-~~ 187 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-------QRQKMTLLHQDGLANLL-VD 187 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-------HTCCCEEEESCTTSCCC-CC
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH-------hhhhhhhhccccccccc-cc
Confidence 456789999999999998775321 12 688999999999999877643 13456777777655443 35
Q ss_pred cceeeEechhhhhcChhh----------------HHHHHHHHHHhcccCcEEE
Q 024100 230 RYDVIWVQWCIGHLTDDD----------------FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 230 ~fDlIvs~~vl~hl~d~~----------------~~~~l~~~~r~LkpgG~li 266 (272)
+||+|+++-.+......+ ...|+..+.+.|+|||.++
T Consensus 188 ~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 188 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 899999985543221111 2248999999999999753
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.46 E-value=3.2e-07 Score=75.15 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC---CCCCCccee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fDl 233 (272)
...+|||+.||||.++.+.+++....|+.||.+...++..++++...+. ......+++.|..++ .....+||+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~----~~~~~~~~~~d~~~~l~~~~~~~~fDl 118 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC----SSEQAEVINQSSLDFLKQPQNQPHFDV 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC----CTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcc----cccccccccccccccccccccCCcccE
Confidence 3558999999999999999877777999999999999999998865421 223456666664332 223347999
Q ss_pred eEechhhhhcChhhHHHHHHHHHH--hcccCcEEEE
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKE--NIARSGTFLL 267 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r--~LkpgG~liv 267 (272)
|++.=-... ......+..+.. +|+++|.+++
T Consensus 119 IFlDPPY~~---~~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 119 VFLDPPFHF---NLAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp EEECCCSSS---CHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEechhHhh---hhHHHHHHHHHHhCCcCCCcEEEE
Confidence 998755322 223467777764 7999998876
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=9.1e-07 Score=79.09 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=61.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGR 230 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~ 230 (272)
..+..+|||+-||+|.++..| ++.+.+|++||.++.+++.|+++... ....|+.|+.++.++... ....
T Consensus 210 ~~~~~~vlDLycG~G~fsl~L-a~~~~~V~gvE~~~~ai~~A~~na~~------n~i~n~~~~~~~~~~~~~~~~~~~~~ 282 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPL-ATQAASVVGVEGVPALVEKGQQNARL------NGLQNVTFYHENLEEDVTKQPWAKNG 282 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHH-HTTSSEEEEEESCHHHHHHHHHHHHH------TTCCSEEEEECCTTSCCSSSGGGTTC
T ss_pred cCCCceEEEecccccccchhc-cccccEEEeccCcHHHHHHHHHhHHh------cccccceeeecchhhhhhhhhhhhcc
Confidence 346679999999999999977 68899999999999999999998643 245689999999876432 2357
Q ss_pred ceeeEec
Q 024100 231 YDVIWVQ 237 (272)
Q Consensus 231 fDlIvs~ 237 (272)
||+|+..
T Consensus 283 ~d~vilD 289 (358)
T d1uwva2 283 FDKVLLD 289 (358)
T ss_dssp CSEEEEC
T ss_pred CceEEeC
Confidence 9999853
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=6.3e-07 Score=75.17 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=75.8
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC--cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~--~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
++.+++|+|+|.|.-+..+ +-.++ +++++|.+..=+...++..... ...++.+++..++++... .+||+|
T Consensus 65 ~~~~ilDiGsGaG~PGi~l-aI~~p~~~~~Lves~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~~~~~-~~fD~V 136 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPL-SIVRPEAHFTLLDSLGKRVRFLRQVQHEL------KLENIEPVQSRVEEFPSE-PPFDGV 136 (207)
T ss_dssp CSSEEEEETCTTTTTHHHH-HHHCTTSEEEEEESCHHHHHHHHHHHHHT------TCSSEEEEECCTTTSCCC-SCEEEE
T ss_pred cCCceeeeeccCCceeeeh-hhhcccceEEEEecchHHHHHHHHHHHHc------CCcceeeeccchhhhccc-ccccee
Confidence 4568999999999999977 44444 7999999998766666554332 346899999999998643 589999
Q ss_pred EechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 235 WVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 235 vs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
++..+- + +..++.-+...++++|.++..
T Consensus 137 ~sRA~~----~--~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 137 ISRAFA----S--LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ECSCSS----S--HHHHHHHHTTSEEEEEEEEEE
T ss_pred hhhhhc----C--HHHHHHHHHHhcCCCcEEEEE
Confidence 987663 2 347888899999999988753
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.26 E-value=1.5e-06 Score=71.29 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~ 229 (272)
+.+++.++|+.+|.|..+..+| +...+|.++|..+.++..|++.. ..++.+++..+.++. ...+
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL-~~~~~viaiD~D~~ai~~a~~~~----------~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGIL-ERGGRVIGLDQDPEAVARAKGLH----------LPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHTC----------CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHh-cccCcEEEEhhhhhHHHHHhhcc----------ccceeEeehHHHHHHHHHHHcCCC
Confidence 4578899999999999999997 45789999999999999998753 357899998886653 1234
Q ss_pred cceeeEec--hhhhhcChh-----hHHHHHHHHHHhcccCcEEEEe
Q 024100 230 RYDVIWVQ--WCIGHLTDD-----DFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 230 ~fDlIvs~--~vl~hl~d~-----~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+|.|+.. .+.+|+.++ .....|......|+|||.+++.
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii 130 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI 130 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence 78888852 223343322 2335778888999999988764
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.6e-06 Score=75.67 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceee
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlI 234 (272)
..+...|||||+|+|.+|..|+ +.+.+|++||.++.+++..++.+... ....+++++.+|+..++++ .++.|
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll-~~~~~v~aiE~D~~l~~~L~~~~~~~-----~~~~~~~~i~~D~l~~~~~--~~~~v 90 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDPRLVAELHKRVQGT-----PVASKLQVLVGDVLKTDLP--FFDTC 90 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHH-HHSSEEEEEESCHHHHHHHHHHHTTS-----TTGGGEEEEESCTTTSCCC--CCSEE
T ss_pred CCCCCEEEEECCCchHHHHHHH-hcCCcEEEEEEccchhHHHHHHHhhh-----ccccchhhhHHHHhhhhhh--hhhhh
Confidence 4567899999999999999986 66789999999999999999987431 1246899999999888754 35677
Q ss_pred EechhhhhcC
Q 024100 235 WVQWCIGHLT 244 (272)
Q Consensus 235 vs~~vl~hl~ 244 (272)
|++--. +++
T Consensus 91 V~NLPY-~Is 99 (278)
T d1zq9a1 91 VANLPY-QIS 99 (278)
T ss_dssp EEECCG-GGH
T ss_pred hcchHH-HHH
Confidence 777554 443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.21 E-value=5.9e-07 Score=74.25 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=66.4
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||.|||+|.++..+.... ...+.++|.++..+.. .....++++|....... ..||
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~fd 80 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------------PPWAEGILADFLLWEPG-EAFD 80 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------------CTTEEEEESCGGGCCCS-SCEE
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------------cccceeeeeehhccccc-cccc
Confidence 3466799999999999988775443 3468999988754322 23457778887766544 5899
Q ss_pred eeEechhhhhcCh--------------------------h-hHHHHHHHHHHhcccCcEEE
Q 024100 233 VIWVQWCIGHLTD--------------------------D-DFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 233 lIvs~~vl~hl~d--------------------------~-~~~~~l~~~~r~LkpgG~li 266 (272)
+|+++..+..... . -...|+.+..+.|+|||++.
T Consensus 81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~ 141 (223)
T d2ih2a1 81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 141 (223)
T ss_dssp EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceE
Confidence 9998765432110 0 12367888899999999864
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1.5e-06 Score=74.90 Aligned_cols=63 Identities=8% Similarity=0.149 Sum_probs=54.1
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~ 226 (272)
..+...|||||||+|.+|..|+ +.+.+|++||.++.+++..+++.. ...+++++.+|+..+++
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll-~~~~~v~aiEiD~~l~~~L~~~~~--------~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVG-ERLDQLTVIELDRDLAARLQTHPF--------LGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHH-TTCSCEEEECCCHHHHHHHHTCTT--------TGGGEEEECSCGGGCCH
T ss_pred CCCCCEEEEECCCchHHHHHHH-ccCCceEEEEeccchhHHHHHHhh--------hccchhHHhhhhhhhcc
Confidence 4567799999999999999885 888999999999999999987652 34689999999988764
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.88 E-value=8.8e-06 Score=69.41 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=71.5
Q ss_pred CCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC---CCcc
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~f 231 (272)
...+++|+|+|.|.-+..| +=. ..+++++|.+..=+...+...... ...++.+++..++++... .++|
T Consensus 70 ~~~~ilDiGSGaGfPGi~l-aI~~p~~~v~Lves~~KK~~FL~~v~~~L------~L~n~~i~~~R~E~~~~~~~~~~~~ 142 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPI-KICFPHLHVTIVDSLNKRITFLEKLSEAL------QLENTTFCHDRAETFGQRKDVRESY 142 (239)
T ss_dssp GCCEEEEECSSSCTTHHHH-HHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEESCHHHHTTCTTTTTCE
T ss_pred CCCeEEeecCCCchHHHHH-HHhCCCccceeecchHHHHHHHHHHHHHh------CCCCcEEEeehhhhccccccccccc
Confidence 4568999999999988866 443 347999999987555544333221 346889999888765321 2589
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
|+|++..+- .+..++.-+...+++||.++.
T Consensus 143 D~v~sRAva------~l~~ll~~~~~~l~~~g~~i~ 172 (239)
T d1xdza_ 143 DIVTARAVA------RLSVLSELCLPLVKKNGLFVA 172 (239)
T ss_dssp EEEEEECCS------CHHHHHHHHGGGEEEEEEEEE
T ss_pred eEEEEhhhh------CHHHHHHHHhhhcccCCEEEE
Confidence 999998663 344799999999999998875
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.74 E-value=0.00058 Score=58.08 Aligned_cols=113 Identities=10% Similarity=0.002 Sum_probs=63.9
Q ss_pred HHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEE
Q 024100 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (272)
Q Consensus 141 ~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~ 218 (272)
-|..+..+.. +.+.++|+|+|||+|.++..+ +... ..|.++++--. ... .+... .......+++..
T Consensus 54 Kl~~~~~~~~----~~~~~~vvDlG~~pGgws~~~-a~~~~v~~V~g~~iG~d---~~e--~P~~~--~~~~~ni~~~~~ 121 (257)
T d2p41a1 54 KLRWFVERNL----VTPEGKVVDLGCGRGGWSYYC-GGLKNVREVKGLTKGGP---GHE--EPIPM--STYGWNLVRLQS 121 (257)
T ss_dssp HHHHHHHTTS----SCCCEEEEEETCTTSHHHHHH-HTSTTEEEEEEECCCST---TSC--CCCCC--CSTTGGGEEEEC
T ss_pred HHHHHHHhcC----ccCCCeEEEecCCCChHHHHH-HhhcCCCceeEEEecCc---ccc--CCccc--cccccccccchh
Confidence 3455555432 567789999999999999977 4442 36667664211 000 00000 001122345544
Q ss_pred eC-CCCCCCCCCcceeeEechhhhhcChhh-----HHHHHHHHHHhcccCcEEEEe
Q 024100 219 VP-LQDFTPETGRYDVIWVQWCIGHLTDDD-----FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 219 ~d-~~~~~~~~~~fDlIvs~~vl~hl~d~~-----~~~~l~~~~r~LkpgG~liv~ 268 (272)
.+ +... +++..|+|+|-.+- +-++++ -.+++.-+.+.|+|||-|++.
T Consensus 122 ~~dv~~l--~~~~~D~vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 122 GVDVFFI--PPERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp SCCTTTS--CCCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred hhhHHhc--CCCcCCEEEeeCCC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 33 2222 34689999987542 222222 225667777999999988764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=5.9e-05 Score=61.28 Aligned_cols=97 Identities=10% Similarity=0.138 Sum_probs=65.2
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC------
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------ 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~------ 226 (272)
+.+..+|||+||++|.++..+.... ...+.++|..+ . ...+++.++++|+.+...
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~--------~~i~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------M--------DPIVGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------C--------CCCTTEEEEESCTTSHHHHHHHHH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------c--------cccCCceEeecccccchhhhhhhh
Confidence 3567799999999999999775332 45788898543 1 124578899999865321
Q ss_pred --CCCcceeeEechhh--------hhcChhh-HHHHHHHHHHhcccCcEEEEe
Q 024100 227 --ETGRYDVIWVQWCI--------GHLTDDD-FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 --~~~~fDlIvs~~vl--------~hl~d~~-~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+++|+|+|-.+. .|...-+ ....+.-+.+.|++||.+|+.
T Consensus 83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K 135 (180)
T d1ej0a_ 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence 23579999975543 1211111 224566667999999998864
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.68 E-value=2.9e-05 Score=65.80 Aligned_cols=97 Identities=8% Similarity=0.030 Sum_probs=63.4
Q ss_pred CCCeeeEeecccchHHHHHHHhc------CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---- 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~------~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---- 226 (272)
+|.+|||||++.|..+..+ +.. -.++.++|+.+.....+. ....+++++.+|..+...
T Consensus 80 KPk~ILEIGv~~GgS~~~~-a~~l~~~~~~~kI~giDId~~~~~~~~-----------~~~~~I~~i~gDs~~~~~~~~l 147 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWF-RDLTKIMGIDCQVIGIDRDLSRCQIPA-----------SDMENITLHQGDCSDLTTFEHL 147 (232)
T ss_dssp CCSEEEEECCTTSHHHHHH-HHHHHHTTCCCEEEEEESCCTTCCCCG-----------GGCTTEEEEECCSSCSGGGGGG
T ss_pred CCCEEEEECCCCchHHHHH-HHHHHhcCCCceEEecCcChhhhhhhh-----------ccccceeeeecccccHHHHHHH
Confidence 4669999999999887744 332 358999998664322211 124689999998765432
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
....+|+|+.-.. |..+..+..+ .+...|+|||++|+-|
T Consensus 148 ~~~~~dlIfID~~--H~~~~v~~~~--~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 148 REMAHPLIFIDNA--HANTFNIMKW--AVDHLLEEGDYFIIED 186 (232)
T ss_dssp SSSCSSEEEEESS--CSSHHHHHHH--HHHHTCCTTCEEEECS
T ss_pred HhcCCCEEEEcCC--cchHHHHHHH--HHhcccCcCCEEEEEc
Confidence 2236888887554 3333333332 3567999999988765
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.63 E-value=0.0001 Score=67.26 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=73.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--------------CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--------------~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~ 221 (272)
....+|+|-.||+|.+...++... ...+.++|.++.+...|+-++-... ....+.++.+.|.
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g----~~~~~~~i~~~d~ 236 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG----IGTDRSPIVCEDS 236 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT----CCSSCCSEEECCT
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC----CccccceeecCch
Confidence 456799999999999998764221 1358999999999999987653211 1223566778887
Q ss_pred CCCCCCCCcceeeEechhhhhcChh---------------hHHHHHHHHHHhcccCcEEE
Q 024100 222 QDFTPETGRYDVIWVQWCIGHLTDD---------------DFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 222 ~~~~~~~~~fDlIvs~~vl~hl~d~---------------~~~~~l~~~~r~LkpgG~li 266 (272)
..... ..+||+|+++--+..-... .-..|+..+...|++||.+.
T Consensus 237 l~~~~-~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 295 (425)
T d2okca1 237 LEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 295 (425)
T ss_dssp TTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhhc-ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence 66543 3589999987655321110 12359999999999999764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.61 E-value=0.00011 Score=64.76 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=73.8
Q ss_pred CCCCCeeeEeecccchHHHHHHHhc--CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcce
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~--~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 232 (272)
..++.+|||+.||+|.=|..++... ...++++|.++.-+...++++.+. ...++.+...|...++.....||
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~------~~~~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL------GVLNVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------TCCSEEEESSCGGGGGGGCCCEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH------Hhhcccccccccccccccccccc
Confidence 4577899999999999888774332 336899999999999988887654 34567777777666655456899
Q ss_pred eeEe----c--hhhhh-------cChhh-------HHHHHHHHHHhcccCcEEE
Q 024100 233 VIWV----Q--WCIGH-------LTDDD-------FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 233 lIvs----~--~vl~h-------l~d~~-------~~~~l~~~~r~LkpgG~li 266 (272)
.|++ + .++.. .+..+ ..++|.+..+.|+|||.+|
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lV 241 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILV 241 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEE
Confidence 9993 2 22211 11111 2357778889999999765
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.0005 Score=59.38 Aligned_cols=105 Identities=17% Similarity=0.069 Sum_probs=69.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-CCCCcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 231 (272)
..++.+|||+.||+|.=|..++ ... ..++++|.++.-+...++++.+. ...++.....|..... ...+.|
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la-~l~~~~~i~a~d~~~~R~~~l~~~~~r~------g~~~~~~~~~~~~~~~~~~~~~f 172 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHIL-EVAPEAQVVAVDIDEQRLSRVYDNLKRL------GMKATVKQGDGRYPSQWCGEQQF 172 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHH-HHCTTCEEEEEESSTTTHHHHHHHHHHT------TCCCEEEECCTTCTHHHHTTCCE
T ss_pred ccccceeEeccCccccchhhhh-hhhhhhhhhhhhcchhhhhhHhhhhhcc------cccceeeeccccccchhcccccc
Confidence 4567899999999999999775 443 46899999999899888888654 2334444444433221 123589
Q ss_pred eeeEe----c--hhhhh-------cChhh-------HHHHHHHHHHhcccCcEEE
Q 024100 232 DVIWV----Q--WCIGH-------LTDDD-------FVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 232 DlIvs----~--~vl~h-------l~d~~-------~~~~l~~~~r~LkpgG~li 266 (272)
|.|++ + .++.. .+..+ ..++|.+..+.|+|||.+|
T Consensus 173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lv 227 (284)
T d1sqga2 173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLV 227 (284)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEE
Confidence 99993 2 22222 11111 2357777788999999875
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0013 Score=56.86 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=58.9
Q ss_pred CCCCCeeeEeecccchHHHHHHHh--cCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---C
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---G 229 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~--~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~ 229 (272)
..++.+|||++||+|.=|..+++. ....++++|.++.=++..++++.+. ...++.+...|...+.+.. +
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~------g~~~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVSCCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGGSCTTCGGGT
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc------Cccceeeeehhhhhhcccccccc
Confidence 356779999999999988877433 2457999999999999999988654 3568899998887664332 4
Q ss_pred cceeeEe
Q 024100 230 RYDVIWV 236 (272)
Q Consensus 230 ~fDlIvs 236 (272)
.||.|++
T Consensus 166 ~fD~VL~ 172 (293)
T d2b9ea1 166 EVHYILL 172 (293)
T ss_dssp TEEEEEE
T ss_pred eeeEEee
Confidence 7999993
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.01 E-value=0.00042 Score=62.38 Aligned_cols=106 Identities=12% Similarity=0.041 Sum_probs=73.7
Q ss_pred CCCeeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCC---------CCCCCCceEEEEeCCCCCCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHM---------APDMHKATNFFCVPLQDFTP 226 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~---------~~~~~~~v~~~~~d~~~~~~ 226 (272)
.+.+|||..||+|..+...+.+. ...|+++|.|+..++.+++++..-... .......+.+.+.|+..+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 35589999999999999764443 458999999999999999987421000 00112346667777644322
Q ss_pred -CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 -ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 -~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....||+|.+-- + ..+- .|+....+.++.||.+.++
T Consensus 125 ~~~~~fDvIDiDP-f---Gs~~--pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 125 ERHRYFHFIDLDP-F---GSPM--EFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HSTTCEEEEEECC-S---SCCH--HHHHHHHHHEEEEEEEEEE
T ss_pred hhcCcCCcccCCC-C---CCcH--HHHHHHHHHhccCCEEEEE
Confidence 224799988753 2 2344 7999999999999999875
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.88 E-value=0.00076 Score=59.28 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=48.5
Q ss_pred CCCeeeEeecccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~ 224 (272)
....|||||+|.|.+|..|+.... .+|+++|.++.+++..++.+. ..++.++.+|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---------~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---------GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---------TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---------CCCcEEEeCchhhc
Confidence 466899999999999999974433 489999999999999988763 35788998888644
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0015 Score=60.92 Aligned_cols=111 Identities=10% Similarity=-0.024 Sum_probs=67.5
Q ss_pred CCCCeeeEeecccchHHHHHHHh---c----------------CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEE
Q 024100 156 NQHLVALDCGSGIGRITKNLLIR---Y----------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~---~----------------~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~ 216 (272)
.+..+|+|-.||+|.+....... . ...+.|+|.++.+...|+-++-..... ........+
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~-~~i~~~~~~ 241 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAI 241 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC-CBGGGTBSE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc-ccccccchh
Confidence 45669999999999998765321 1 125899999999999998665321100 000112234
Q ss_pred EEeCCCCCC-CCCCcceeeEechhhhhcChh------------hHHHHHHHHHHhcccCcEEEE
Q 024100 217 FCVPLQDFT-PETGRYDVIWVQWCIGHLTDD------------DFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 217 ~~~d~~~~~-~~~~~fDlIvs~~vl~hl~d~------------~~~~~l~~~~r~LkpgG~liv 267 (272)
...+...-+ ....+||+|+++--+.--.+. .-..|+..+.+.|+|||++.+
T Consensus 242 ~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai 305 (524)
T d2ar0a1 242 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 305 (524)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEE
Confidence 444443221 122479999987544221111 112599999999999997643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.61 E-value=0.0083 Score=46.62 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=63.2
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC-CCC-------
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFT------- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~-~~~------- 225 (272)
+.++.+||=+||| .|.++..++...+.+|+++|.++.-++.|++.-. ...+...+.. +..
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga-----------~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA-----------DVTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-----------SEEEECCTTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC-----------cEEEeccccccccchhhhhhh
Confidence 4577899999998 7788887765668899999999999999987531 1122211111 100
Q ss_pred -CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 -~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+.+|+|+-.-. .. ..+..+.+.++|+|.++..
T Consensus 93 ~~~g~g~D~vid~~g------~~--~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 93 SAIGDLPNVTIDCSG------NE--KCITIGINITRTGGTLMLV 128 (170)
T ss_dssp HHSSSCCSEEEECSC------CH--HHHHHHHHHSCTTCEEEEC
T ss_pred cccccCCceeeecCC------Ch--HHHHHHHHHHhcCCceEEE
Confidence 01235888874322 12 5778888999999998754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.52 E-value=0.00038 Score=54.99 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=62.4
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEe-CCCCC-CCCCCcc
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF-TPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~-d~~~~-~~~~~~f 231 (272)
..++.+||-+||| .|..+..++...+.+|+++|.|++-++.|++. .. . .++.. +-.++ ....+.+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l-Ga--------~---~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM-GA--------D---HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH-TC--------S---EEEEGGGTSCHHHHSCSCE
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc-CC--------c---EEeeccchHHHHHhhhccc
Confidence 5678899999998 78888877655688999999999999999874 10 1 12221 11111 1123579
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+..-.-.+ + ..+..+.+.|+|+|.++..
T Consensus 93 d~vi~~~~~~~----~--~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 93 DLIVVCASSLT----D--IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEEEECCSCST----T--CCTTTGGGGEEEEEEEEEC
T ss_pred ceEEEEecCCc----c--chHHHHHHHhhccceEEEe
Confidence 98885422211 1 1234567889999998764
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.33 E-value=0.0057 Score=54.40 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=68.8
Q ss_pred HHHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHH-------Hhc--------CC--cEEEEe-CCHHHHHHHHHhc
Q 024100 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL-------IRY--------FN--EVDLLE-PVSHFLDAARESL 200 (272)
Q Consensus 139 ~~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LL-------a~~--------~~--~v~~vD-~S~~mld~A~~~l 200 (272)
...+...+.........+..-+|+|+||.+|..|..++ .+. -+ +|..-| |+-.+=...+. +
T Consensus 33 kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~-L 111 (359)
T d1m6ex_ 33 KPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRS-L 111 (359)
T ss_dssp HHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTT-T
T ss_pred HHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHh-c
Confidence 34444444433221122344689999999999885322 110 11 334445 44444333332 2
Q ss_pred cccCCCCCCCCCc--eEEEEeCCCCCCCCCCcceeeEechhhhhcCh-------------------------------hh
Q 024100 201 APENHMAPDMHKA--TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------DD 247 (272)
Q Consensus 201 ~~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fDlIvs~~vl~hl~d-------------------------------~~ 247 (272)
... ....++ +.-+.+.+-.=-+++++.|+++|++++|+++. .|
T Consensus 112 ~~~----~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D 187 (359)
T d1m6ex_ 112 PIE----NDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQED 187 (359)
T ss_dssp TTS----CSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHH
T ss_pred ccc----ccCCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHH
Confidence 111 001111 22234555544456789999999999999852 13
Q ss_pred HHHHHHHHHHhcccCcEEEEe
Q 024100 248 FVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 248 ~~~~l~~~~r~LkpgG~liv~ 268 (272)
+..||+.=.+-|.|||.++++
T Consensus 188 ~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 188 HALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp HHHHHHHHHHHBCTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEE
Confidence 445666666889999988763
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.29 E-value=0.0051 Score=49.70 Aligned_cols=102 Identities=8% Similarity=-0.144 Sum_probs=62.7
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||-+|||. |..+..++...+ ..|.++|.++.-++.|++.=. . .++...-+++. .
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga-----------~-~~~~~~~~~~~~~i~~~t 90 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-----------E-IADLSLDTPLHEQIAALL 90 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-----------E-EEETTSSSCHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc-----------c-EEEeCCCcCHHHHHHHHh
Confidence 56788999999997 656665643344 479999999999999987521 1 11111001110 0
Q ss_pred CCCcceeeEech-------hhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQW-------CIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~-------vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+++-.- ..+.+......+.|+.+.+.++|||.+++.
T Consensus 91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 123588888321 111111112236999999999999998754
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.25 E-value=0.00089 Score=56.93 Aligned_cols=78 Identities=18% Similarity=0.114 Sum_probs=55.5
Q ss_pred CeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCC---CCCCceEEEEeCCCCCCC-CCCcceee
Q 024100 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMHKATNFFCVPLQDFTP-ETGRYDVI 234 (272)
Q Consensus 159 ~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~---~~~~~v~~~~~d~~~~~~-~~~~fDlI 234 (272)
.+|||+=||.|+.+..+ +..+.+|+++|-++.+....++.+.++..... ....+++++++|..++.. ..++||+|
T Consensus 90 ~~VlD~TaGlG~Da~vl-A~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVL-ASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHH-HHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHH-HhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 48999999999999966 68899999999999876666655543211000 012478999999765422 23579999
Q ss_pred Eec
Q 024100 235 WVQ 237 (272)
Q Consensus 235 vs~ 237 (272)
+.-
T Consensus 169 YlD 171 (250)
T d2oyra1 169 YLD 171 (250)
T ss_dssp EEC
T ss_pred EEC
Confidence 953
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.83 E-value=0.02 Score=45.04 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=61.6
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-----C-C
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----T-P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-----~-~ 226 (272)
..++.+||-+||| .|..+..++...+. +|.++|.++.-++.+++.=. ...++....+..+. . .
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------~~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA---------DLTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC---------SEEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc---------eEEEeccccchHHHHHHHHHhh
Confidence 4567899999998 58888878655565 79999999999999976411 11111111111000 0 1
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-.-. .+ ..++...+.|+|||.++..
T Consensus 97 ~~~g~Dvvid~vG-----~~---~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 97 HGRGADFILEATG-----DS---RALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp TTSCEEEEEECSS-----CT---THHHHHHHHEEEEEEEEEC
T ss_pred CCCCceEEeecCC-----ch---hHHHHHHHHhcCCCEEEEE
Confidence 1235999884422 12 3677788999999998653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.038 Score=42.98 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=63.1
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||-.|+ |.|..+..++...+.+|++++.|++-++.+++.- .. .++...-+++. .
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~G---------a~---~vi~~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNG---------AH---EVFNHREVNYIDKIKKYV 93 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT---------CS---EEEETTSTTHHHHHHHHH
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccC---------cc---cccccccccHHHHhhhhh
Confidence 567789999996 5888888887666889999998998888887631 11 12221111111 1
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+.+-. . ..+....+.|+|+|.++..
T Consensus 94 ~~~g~d~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 94 GEKGIDIIIEMLA-------N--VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CTTCEEEEEESCH-------H--HHHHHHHHHEEEEEEEEEC
T ss_pred ccCCceEEeeccc-------H--HHHHHHHhccCCCCEEEEE
Confidence 2346999886533 1 3577778999999998864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.38 E-value=0.028 Score=44.19 Aligned_cols=96 Identities=10% Similarity=-0.036 Sum_probs=61.2
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC----CCCCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ----DFTPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~----~~~~~~ 228 (272)
+.++.+||=+|||. |..+..++...+. +|.++|.++.-++.|++. .. ...+++...++. +.. ..
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l-Ga--------~~~i~~~~~~~~~~v~~~t-~g 94 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY-GA--------TDILNYKNGHIEDQVMKLT-NG 94 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH-TC--------SEEECGGGSCHHHHHHHHT-TT
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh-Cc--------cccccccchhHHHHHHHHh-hc
Confidence 56777899899996 8888877544454 799999999999999864 10 111111111111 111 12
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..+|+|+-.-.- + ..+.++.+.++|+|.++..
T Consensus 95 ~G~D~vid~~g~-----~---~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 95 KGVDRVIMAGGG-----S---ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp SCEEEEEECSSC-----T---THHHHHHHHEEEEEEEEEC
T ss_pred cCcceEEEccCC-----H---HHHHHHHHHHhcCCEEEEE
Confidence 359988754331 2 3667778999999998764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.058 Score=41.72 Aligned_cols=94 Identities=15% Similarity=0.061 Sum_probs=60.2
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-------
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------- 225 (272)
+.+..+||=+|||+ |..+..++...+. +|+++|.++.-++.|++.= .. .++..+-++..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~G----------a~--~~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG----------AD--LVLQISKESPQEIARKVE 91 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT----------CS--EEEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhC----------Cc--cccccccccccccccccc
Confidence 45677999999985 4555555444565 7999999999999998641 11 12222212110
Q ss_pred -CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 -~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
.....+|+|+-.-. .+ ..++...+.+++||.++..
T Consensus 92 ~~~g~g~Dvvid~~G------~~--~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 92 GQLGCKPEVTIECTG------AE--ASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp HHHTSCCSEEEECSC------CH--HHHHHHHHHSCTTCEEEEC
T ss_pred ccCCCCceEEEeccC------Cc--hhHHHHHHHhcCCCEEEEE
Confidence 01136888875433 12 5788889999999998753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.20 E-value=0.036 Score=42.67 Aligned_cols=93 Identities=19% Similarity=0.098 Sum_probs=59.9
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CCC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 228 (272)
..++.+||=+||| .|..+..++...+.+|.++|.++.-++.+++.= ...++...-+++. ...
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~G------------a~~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLG------------ASLTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------------CSEEEETTTSCHHHHHHHHHS
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccC------------ccccccccchhHHHHHHHhhc
Confidence 4567789889988 577777776556789999999999999988641 1122322222210 011
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+|+|++... . ..+..+.+.|+|+|.++..
T Consensus 93 g~~~~i~~~~~------~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 93 GAHGVLVTAVS------N---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SEEEEEECCSC------H---HHHHHHHTTEEEEEEEEEC
T ss_pred CCccccccccc------c---hHHHHHHHHhcCCcEEEEE
Confidence 23445444332 2 4677888999999998763
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.71 E-value=0.007 Score=48.14 Aligned_cols=100 Identities=7% Similarity=0.027 Sum_probs=68.5
Q ss_pred CCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 157 ~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
++.+|+=+|+| .|..+...+.+.+.+|+++|.+++-++..+..+. .++++...+-+.+...-...|+|+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~----------~~~~~~~~~~~~l~~~~~~aDivI 100 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG----------SRVELLYSNSAEIETAVAEADLLI 100 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----------GGSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc----------ccceeehhhhhhHHHhhccCcEEE
Confidence 57799999999 5777777766789999999999999988877653 245555443322211113689999
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
..-.+---.-|. -+=+++.+.+|||..++|.
T Consensus 101 ~aalipG~~aP~--lIt~~mv~~Mk~GSVIVDv 131 (168)
T d1pjca1 101 GAVLVPGRRAPI--LVPASLVEQMRTGSVIVDV 131 (168)
T ss_dssp ECCCCTTSSCCC--CBCHHHHTTSCTTCEEEET
T ss_pred EeeecCCcccCe--eecHHHHhhcCCCcEEEEe
Confidence 765432211122 3456788899999999985
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.61 E-value=0.16 Score=37.42 Aligned_cols=88 Identities=10% Similarity=0.044 Sum_probs=56.0
Q ss_pred eeeEeecccchHHHHH---HHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC----CCCcce
Q 024100 160 VALDCGSGIGRITKNL---LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~L---La~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD 232 (272)
+|+=+|+ |+++..+ |.+.+..|.++|.+++.++.+++.+ .+.++.+|..+... .-...|
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~------------~~~vi~Gd~~~~~~l~~~~i~~a~ 67 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI------------DALVINGDCTKIKTLEDAGIEDAD 67 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh------------hhhhccCcccchhhhhhcChhhhh
Confidence 4666666 4554444 3456789999999999998887654 35678888865431 124688
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
.+++.. ++++..-+.....+.+.+.-.+.
T Consensus 68 ~vv~~t-----~~d~~N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 68 MYIAVT-----GKEEVNLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp EEEECC-----SCHHHHHHHHHHHHHTTCCCEEE
T ss_pred hhcccC-----CcHHHHHHHHHHHHHcCCceEEE
Confidence 887742 23444445555666677765544
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.04 E-value=0.05 Score=45.55 Aligned_cols=57 Identities=9% Similarity=-0.014 Sum_probs=45.9
Q ss_pred HHHHHHHhccCCCccCCCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccc
Q 024100 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 140 ~~L~~ll~~~l~~~~~~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~ 202 (272)
.++..++... .+++..|||.=||+|..+... ...+...+|+|.++++++.|++++..
T Consensus 238 ~L~~rlI~~~-----s~~gdiVlDpF~GSGTT~~AA-~~lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVA-ERESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHH-HHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhc-----ccCCCEEEecCCCCcHHHHHH-HHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence 3455555422 257789999999999999966 57899999999999999999998853
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.99 E-value=0.043 Score=42.35 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=61.8
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------ 225 (272)
+.++.+||=+|| |.|..+..++...+ ..|.+++.++.-++.+++.=. . .++..+-+++.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga---------~---~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA---------D---YVINASMQDPLAEIRRI 92 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC---------S---EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC---------c---eeeccCCcCHHHHHHHH
Confidence 567789999996 36777776655455 589999999999999887410 1 22222222211
Q ss_pred CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 226 ~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+.||+|+-... .. ..++...+.++|||.+++.
T Consensus 93 ~~~~~~d~vid~~g------~~--~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 93 TESKGVDAVIDLNN------SE--KTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp TTTSCEEEEEESCC------CH--HHHTTGGGGEEEEEEEEEC
T ss_pred hhcccchhhhcccc------cc--hHHHhhhhhcccCCEEEEe
Confidence 01246999886543 12 4667778999999998764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.79 E-value=0.11 Score=39.56 Aligned_cols=93 Identities=17% Similarity=0.069 Sum_probs=57.6
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 228 (272)
..++.+||=.|||+ |..+..++...+.+|.+++.++.-++.+++.=. . .++...-+++. ..+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga----------~--~~~~~~~~~~~~~~~~~~~ 92 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA----------D--LVVNPLKEDAAKFMKEKVG 92 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC----------S--EEECTTTSCHHHHHHHHHS
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc----------c--eecccccchhhhhcccccC
Confidence 45778899999884 555565655567899999999999998877410 1 11111111110 012
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+.+|+|+.... . ..+....+.|+|+|.+++.
T Consensus 93 ~~~~~v~~~~~-------~--~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 93 GVHAAVVTAVS-------K--PAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp SEEEEEESSCC-------H--HHHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeecCC-------H--HHHHHHHHHhccCCceEec
Confidence 34555543221 2 5678889999999998864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.68 E-value=0.17 Score=38.56 Aligned_cols=88 Identities=9% Similarity=-0.055 Sum_probs=59.6
Q ss_pred eeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
+|.=||+| -+.++..| .+.+.+|.++|.+++.++.+++.- .+.....+.+.+ ...|+|+..
T Consensus 2 kI~iIG~G~mG~~lA~~l-~~~g~~V~~~d~~~~~~~~a~~~~------------~~~~~~~~~~~~----~~~DiIila 64 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTCEKAVERQ------------LVDEAGQDLSLL----QTAKIIFLC 64 (165)
T ss_dssp EEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTT------------SCSEEESCGGGG----TTCSEEEEC
T ss_pred EEEEEeecHHHHHHHHHH-HHCCCEEEEEECCchHHHHHHHhh------------ccceeeeecccc----ccccccccc
Confidence 45667887 33455655 577889999999999998887642 111222222222 368998864
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEec
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLSH 269 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E 269 (272)
- +.....++++++...++++-.+++.-
T Consensus 65 v-----p~~~~~~vl~~l~~~l~~~~iv~~~~ 91 (165)
T d2f1ka2 65 T-----PIQLILPTLEKLIPHLSPTAIVTDVA 91 (165)
T ss_dssp S-----CHHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred C-----cHhhhhhhhhhhhhhcccccceeecc
Confidence 3 33556689999999999999887654
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.67 E-value=0.11 Score=45.35 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCCCeeeEeecccchHHHHHHHhc--------CCcEEEEeCCHHHHHHHHHhcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY--------FNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~--------~~~v~~vD~S~~mld~A~~~l~ 201 (272)
+.+.+|+|+|+|.|.++..++... .-.+..+|+|+.+.+.-++.+.
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 455689999999999998876321 1247889999998888888774
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.44 E-value=0.085 Score=42.72 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=40.2
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhcc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~ 201 (272)
.++..|||.=||+|..+... .+.+.+.+|+|.+++.++.|++++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa-~~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVA-KKLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHH-HHcCCeEEEEeCCHHHHHHHHHHHc
Confidence 46789999999999999955 5888999999999999999999873
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.19 E-value=0.22 Score=38.44 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=59.6
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 227 (272)
..++.+||=+|||. |..+..++...+. .+.++|.++.-++.+++. . ...++..+-+++. ..
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-G-----------a~~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-G-----------ATHVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-T-----------CSEEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-C-----------CeEEEeCCCcCHHHHHHHHc
Confidence 56788999999984 4455555434444 567789999999999864 1 1123333222221 12
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
++.||+|+-.-. .. ..++.+.+.++|+|.++.
T Consensus 94 ~gg~D~vid~~G------~~--~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 94 DGGVNFALESTG------SP--EILKQGVDALGILGKIAV 125 (174)
T ss_dssp TSCEEEEEECSC------CH--HHHHHHHHTEEEEEEEEE
T ss_pred CCCCcEEEEcCC------cH--HHHHHHHhcccCceEEEE
Confidence 357999884432 12 577888999999999876
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.00 E-value=0.43 Score=40.50 Aligned_cols=103 Identities=11% Similarity=-0.004 Sum_probs=68.6
Q ss_pred eeeEeecccchHHHHHHHhcCCcEEEEeCC-HHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-C-------CCCCc
Q 024100 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-------PETGR 230 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S-~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~~~ 230 (272)
-|+.+|||-=.-...+ ...+.+..+|++ +.+++.-++.+..... ....+..++..|+.+- . +.+..
T Consensus 92 qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~p~vi~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 92 QFVILASGLDSRAYRL--DWPTGTTVYEIDQPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp EEEEETCTTCCHHHHS--CCCTTCEEEEEECHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred eEEEeCcccCChhhhc--CCCcCceEEEcCChHHHHHHHHHHHhcCC---CCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 4666999976554434 334566666644 7777766666643211 1234667788887641 1 11223
Q ss_pred ceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 231 YDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 231 fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
-=++++..++.|++.++..++|+.+.+...||+.+++
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~ 203 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV 203 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 4456677899999999999999999999999988764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.84 E-value=0.043 Score=42.40 Aligned_cols=94 Identities=15% Similarity=0.061 Sum_probs=60.5
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCcce
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD 232 (272)
+.++.+||=+||| .|.++..++...+.++++++.+++-++.+++.= .. .++...-++. ....+.+|
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lG---------ad---~~i~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALG---------AD---EVVNSRNADEMAAHLKSFD 95 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT---------CS---EEEETTCHHHHHTTTTCEE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccC---------Cc---EEEECchhhHHHHhcCCCc
Confidence 5678899999987 577888776556778999998888788887541 11 2222211111 11224799
Q ss_pred eeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 233 VIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 233 lIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
+++-.-. .+ ..+....+.++|+|.++..
T Consensus 96 ~vid~~g-----~~---~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 96 FILNTVA-----AP---HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEEECCS-----SC---CCHHHHHTTEEEEEEEEEC
T ss_pred eeeeeee-----cc---hhHHHHHHHHhcCCEEEEe
Confidence 8875432 12 2456677899999998764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.54 E-value=0.28 Score=38.11 Aligned_cols=97 Identities=12% Similarity=-0.076 Sum_probs=61.0
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC--CC--CCCC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ--DF--TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~--~~--~~~~ 228 (272)
+.++.+||=+|||. |..+..++...+. .|+++|+++.=++.|++.=. ...+++...|-. .. ....
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga---------~~~i~~~~~~~~~~~~~~~~~~ 96 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA---------TDCLNPRELDKPVQDVITELTA 96 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------SEEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC---------CcccCCccchhhhhhhHhhhhc
Confidence 56778999999996 7888877544554 68889999998888887421 111111111100 00 0012
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhcccC-cEEEEe
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARS-GTFLLS 268 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkpg-G~liv~ 268 (272)
+.+|+|+-.-- .. ..+.+..+.++|| |.+++.
T Consensus 97 ~G~d~vie~~G------~~--~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 97 GGVDYSLDCAG------TA--QTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp SCBSEEEESSC------CH--HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCcEEEEecc------cc--hHHHHHHHHhhcCCeEEEec
Confidence 46888874332 12 5788899999996 988753
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=92.49 E-value=0.17 Score=42.15 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=49.6
Q ss_pred eeeEeecccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-CcceeeEec
Q 024100 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlIvs~ 237 (272)
+|||+=||.|.++..| .+. +.-+-++|.++...+.-+.+.. -.++++|+.+++..+ ...|+++..
T Consensus 2 k~~~lF~G~Gg~~~gl-~~aG~~~~~a~e~d~~a~~~~~~N~~------------~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGF-QKAGFRIICANEYDKSIWKTYESNHS------------AKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp EEEEESCSSCHHHHHH-HHHTCEEEEEEECCHHHHHHHHHHCC------------SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred eEEEeCcCcCHHHHHH-HHCCCEEEEEEeCCHHHHHHHHHHCC------------CCCccCChhhCCHhHcccccEEeec
Confidence 7999999999999877 454 4455689999999988888762 246778998886432 468999943
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.22 E-value=0.4 Score=36.34 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=59.7
Q ss_pred eeeEeeccc-c-hHHHHHHHhcC--CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCCCcceeeE
Q 024100 160 VALDCGSGI-G-RITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (272)
Q Consensus 160 ~VLDiGcGt-G-~~t~~LLa~~~--~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fDlIv 235 (272)
+|+=||||- | .+++.| .+.+ .+|.++|.+++.++.+++.- .+.....+.... .....|+|+
T Consensus 3 ~I~IIG~G~mG~sla~~L-~~~g~~~~I~~~D~~~~~~~~a~~~~------------~~~~~~~~~~~~--~~~~~dlIi 67 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISKAVDLG------------IIDEGTTSIAKV--EDFSPDFVM 67 (171)
T ss_dssp EEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHHHHTT------------SCSEEESCGGGG--GGTCCSEEE
T ss_pred EEEEEccCHHHHHHHHHH-HhcCCCeEEEEEECChHHHHHHHHhh------------cchhhhhhhhhh--hcccccccc
Confidence 467789983 4 455555 4544 37999999999999998752 122222222221 123578888
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEEecC
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHS 270 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~ 270 (272)
..--. .....++.++...++++-.+++.-+
T Consensus 68 la~p~-----~~~~~vl~~l~~~~~~~~ii~d~~s 97 (171)
T d2g5ca2 68 LSSPV-----RTFREIAKKLSYILSEDATVTDQGS 97 (171)
T ss_dssp ECSCH-----HHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred ccCCc-----hhhhhhhhhhhcccccccccccccc
Confidence 66543 3456889999999999998887644
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.13 E-value=0.11 Score=42.59 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=41.0
Q ss_pred CCCCeeeEeecccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccc
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~ 202 (272)
.++..|||.=||+|..+... ...+.+.+++|.++...+.|++++..
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa-~~lgR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVA-IQEGRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHH-HHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred CCCCEEEecCCCCcHHHHHH-HHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence 46789999999999999865 57789999999999999999999864
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.02 E-value=0.25 Score=37.95 Aligned_cols=94 Identities=15% Similarity=0.017 Sum_probs=58.7
Q ss_pred CCCCCeeeEeeccc-chHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC-----CC
Q 024100 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (272)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 227 (272)
..+..+||=+|||. |..+..++...+ ..|.++|.++.-++.+++.-. ..++..+-+.+. ..
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga------------~~~i~~~~~~~~~~~~~~~ 97 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA------------DHVVDARRDPVKQVMELTR 97 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC------------SEEEETTSCHHHHHHHHTT
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc------------ceeecCcccHHHHHHHhhC
Confidence 35677899999985 455555543444 577889999998888887431 122222211110 01
Q ss_pred CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
...+|+|+-.-.- . ..++...+.|++||.++..
T Consensus 98 ~~g~d~vid~~g~------~--~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 98 GRGVNVAMDFVGS------Q--ATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp TCCEEEEEESSCC------H--HHHHHGGGGEEEEEEEEEC
T ss_pred CCCceEEEEecCc------c--hHHHHHHHHHhCCCEEEEE
Confidence 2358988754331 2 4677788999999998763
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.44 E-value=0.11 Score=40.79 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=61.9
Q ss_pred CCCCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCcc
Q 024100 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~f 231 (272)
..++.+||=-| .|.|..+.+++...+.+|+++.-|++-.+.+++.= ....++....+.+.. ...++.|
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lG---------a~~vi~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLG---------AKEVLAREDVMAERIRPLDKQRW 99 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTT---------CSEEEECC---------CCSCCE
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcc---------cceeeecchhHHHHHHHhhccCc
Confidence 34566888887 46788889887677889999998888888887642 122232222111111 1234589
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+-+-. . ..+.+..+.|+|||.++..
T Consensus 100 D~vid~vg-------g--~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 100 AAAVDPVG-------G--RTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp EEEEECST-------T--TTHHHHHHTEEEEEEEEEC
T ss_pred CEEEEcCC-------c--hhHHHHHHHhCCCceEEEe
Confidence 98775432 1 3577789999999999864
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.79 E-value=0.092 Score=41.94 Aligned_cols=110 Identities=8% Similarity=-0.080 Sum_probs=61.0
Q ss_pred CCCeeeEeeccc-chHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCC---C-----
Q 024100 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---E----- 227 (272)
Q Consensus 157 ~~~~VLDiGcGt-G~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~---~----- 227 (272)
++.+||=||+|+ |..+...+...+.+|+++|.++.-++..+......-...........-..+...+... .
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 567999999995 5666666556799999999999988888876432100000000000000000000000 0
Q ss_pred ----CCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 228 ----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 228 ----~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
-...|+|+..-.+--=.-|. -+=+++.+.+|||..++|.
T Consensus 108 l~~~l~~aDlVI~talipG~~aP~--lit~~mv~~Mk~GSVIVDv 150 (183)
T d1l7da1 108 VLKELVKTDIAITTALIPGKPAPV--LITEEMVTKMKPGSVIIDL 150 (183)
T ss_dssp HHHHHTTCSEEEECCCCTTSCCCC--CSCHHHHTTSCTTCEEEET
T ss_pred HHHHHHhhhhheeeeecCCcccce--eehHHHHHhcCCCcEEEEE
Confidence 02588988654432211222 2446678899999999985
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.30 E-value=0.51 Score=36.09 Aligned_cols=93 Identities=12% Similarity=0.002 Sum_probs=61.2
Q ss_pred CCCCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||=.| .|.|..+..++...+.++.++.-+++-.+.+++.- .. .++...-+++. .
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~G----------a~--~vi~~~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG----------VE--YVGDSRSVDFADEILELT 90 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC----------CS--EEEETTCSTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccc----------cc--ccccCCccCHHHHHHHHh
Confidence 45677898876 45788888887667889999988887778777531 11 22222212221 1
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+..-. . +.++.+.+.|+++|.++..
T Consensus 91 ~~~g~d~v~d~~g-------~--~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 91 DGYGVDVVLNSLA-------G--EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTCCEEEEEECCC-------T--HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCEEEEEeccc-------c--hHHHHHHHHhcCCCEEEEE
Confidence 2246999996543 1 3566778999999998864
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.59 Score=35.64 Aligned_cols=93 Identities=10% Similarity=0.001 Sum_probs=61.6
Q ss_pred CCCCCeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||=.|+| .|.....++...+.+|++++.|++-++.+++.= .. .++...-+++. .
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lG---------a~---~vi~~~~~d~~~~v~~~t 93 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG---------AW---QVINYREEDLVERLKEIT 93 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT---------CS---EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcC---------Ce---EEEECCCCCHHHHHHHHh
Confidence 4567788888554 688888887667889999999999999987641 11 22222222221 1
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-.-.- +.+......++|+|.++..
T Consensus 94 ~g~g~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 94 GGKKVRVVYDSVGR---------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp TTCCEEEEEECSCG---------GGHHHHHHTEEEEEEEEEC
T ss_pred CCCCeEEEEeCccH---------HHHHHHHHHHhcCCeeeec
Confidence 23478987754331 2456778899999988764
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.92 E-value=0.12 Score=43.51 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCeeeEeecccchHHHHHHHhcCC--c-EEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC---Ccc
Q 024100 158 HLVALDCGSGIGRITKNLLIRYFN--E-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (272)
Q Consensus 158 ~~~VLDiGcGtG~~t~~LLa~~~~--~-v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~f 231 (272)
+.+|+|+-||.|.++..| .+.+- + +-++|.++..++..+.+.. ...+++.|+.++.... ..+
T Consensus 2 p~kv~~lF~G~Gg~~~gl-~~aG~~~~~~~a~E~~~~a~~~~~~n~~-----------~~~~~~~di~~~~~~~~~~~~~ 69 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHAL-RESCIPAQVVAAIDVNTVANEVYKYNFP-----------HTQLLAKTIEGITLEEFDRLSF 69 (343)
T ss_dssp CEEEEEETCTTCHHHHHH-HHHTCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECSCGGGCCHHHHHHHCC
T ss_pred CCEEEEcCcCccHHHHHH-HHcCCCCeEEEEEECCHHHHHHHHHHCC-----------CCCcccCchhhCCHhHcCCCCc
Confidence 568999999999999877 45442 3 5678999999998888752 3456677877664321 258
Q ss_pred eeeEec
Q 024100 232 DVIWVQ 237 (272)
Q Consensus 232 DlIvs~ 237 (272)
|+++..
T Consensus 70 Dll~gg 75 (343)
T d1g55a_ 70 DMILMS 75 (343)
T ss_dssp SEEEEC
T ss_pred cEEEee
Confidence 999843
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.91 E-value=0.078 Score=41.17 Aligned_cols=92 Identities=11% Similarity=0.037 Sum_probs=58.7
Q ss_pred CCCCCeeeEeec--ccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCC-CCCCCCCCcc
Q 024100 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRY 231 (272)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~f 231 (272)
+.++.+||=.|+ |.|..+..++...+.+|.+++.+++-++.+++.= ....+++ .+. .... ....+
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lG---------a~~~i~~--~~~~~~~~-~~~g~ 92 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALG---------AEEAATY--AEVPERAK-AWGGL 92 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTT---------CSEEEEG--GGHHHHHH-HTTSE
T ss_pred CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccc---------cceeeeh--hhhhhhhh-ccccc
Confidence 567788998884 4578888886666889999998888888887631 1112221 111 1111 22469
Q ss_pred eeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 232 DVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 232 DlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+|+-. .. + .+..+.+.|+|+|.++..
T Consensus 93 D~v~d~--~G----~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 93 DLVLEV--RG----K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEEEC--SC----T----THHHHHTTEEEEEEEEEC
T ss_pred cccccc--cc----h----hHHHHHHHHhcCCcEEEE
Confidence 998852 21 1 245667899999998753
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=88.75 E-value=1.1 Score=34.36 Aligned_cols=93 Identities=9% Similarity=0.020 Sum_probs=62.5
Q ss_pred CCCCCeeeEeecc--cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC------C
Q 024100 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (272)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~------~ 226 (272)
+.++.+||=.|+| .|..+..++...+.+|+++.-+++-++.+++.-. -..+..+-+++. .
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga------------~~vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF------------DAAFNYKTVNSLEEALKKA 94 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC------------SEEEETTSCSCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh------------hhhcccccccHHHHHHHHh
Confidence 5677899987763 6788888876678899999999888888876421 112222212110 1
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
....+|+|+-+-. . +.++++.+.|+|+|.++..
T Consensus 95 ~~~Gvd~v~D~vG-------~--~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 95 SPDGYDCYFDNVG-------G--EFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp CTTCEEEEEESSC-------H--HHHHHHGGGEEEEEEEEEC
T ss_pred hcCCCceeEEecC-------c--hhhhhhhhhccCCCeEEee
Confidence 2246999775432 1 4677889999999998864
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=86.98 E-value=0.3 Score=40.98 Aligned_cols=66 Identities=14% Similarity=-0.016 Sum_probs=48.1
Q ss_pred CCCeeeEeecccchHHHHHHHhcCC-cEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCCC-Ccceee
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDVI 234 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~-~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fDlI 234 (272)
.+.+|||+=||.|.++..| .+.+- -+-++|.++..++.-+.+.... .++|+.++.... ..+|+|
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl-~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------------~~~Di~~~~~~~~~~~Dll 75 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLAL-ESCGAECVYSNEWDKYAQEVYEMNFGEK-------------PEGDITQVNEKTIPDHDIL 75 (327)
T ss_dssp TTCEEEEETCTTTHHHHHH-HHTTCEEEEEECCCHHHHHHHHHHHSCC-------------CBSCGGGSCGGGSCCCSEE
T ss_pred CCCeEEEECccccHHHHHH-HHCCCeEEEEEeCCHHHHHHHHHHCCCC-------------CcCchhcCchhhcceeeee
Confidence 4579999999999999987 56554 4466899999999999887421 135666654322 368998
Q ss_pred Ee
Q 024100 235 WV 236 (272)
Q Consensus 235 vs 236 (272)
+.
T Consensus 76 ~g 77 (327)
T d2c7pa1 76 CA 77 (327)
T ss_dssp EE
T ss_pred ec
Confidence 84
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=86.97 E-value=0.42 Score=39.69 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=70.7
Q ss_pred CCCCeeeEeecccchHHHHHHHhc---C--------------------------------------CcEEEEeCCHHHHH
Q 024100 156 NQHLVALDCGSGIGRITKNLLIRY---F--------------------------------------NEVDLLEPVSHFLD 194 (272)
Q Consensus 156 ~~~~~VLDiGcGtG~~t~~LLa~~---~--------------------------------------~~v~~vD~S~~mld 194 (272)
..+..++|--||+|.+..+.+.-. . ..+.+.|.++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 456689999999999988753210 0 12345666777777
Q ss_pred HHH---HhccccCCCCCCCCCceEEEEeCCCCCCC-----CCCcceeeEechhhhh-c------ChhhHHHHHHHHHHhc
Q 024100 195 AAR---ESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETGRYDVIWVQWCIGH-L------TDDDFVSFFKRAKENI 259 (272)
Q Consensus 195 ~A~---~~l~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fDlIvs~~vl~h-l------~d~~~~~~l~~~~r~L 259 (272)
.|+ +++..+ +....+.+...|+.+..+ .+..+++|++|=-... + .+..+.+++..+.+.+
T Consensus 129 ~A~~~r~n~~~A-----gl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~ 203 (249)
T d1o9ga_ 129 AARRLRERLTAE-----GGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL 203 (249)
T ss_dssp HHHHHHHHHHHT-----TSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHc-----CCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccC
Confidence 773 455433 345678999999865432 2346899999854322 2 1234667888888888
Q ss_pred ccCcEEEEecC
Q 024100 260 ARSGTFLLSHS 270 (272)
Q Consensus 260 kpgG~liv~E~ 270 (272)
.....++++.+
T Consensus 204 p~~s~~~it~~ 214 (249)
T d1o9ga_ 204 PAHAVIAVTDR 214 (249)
T ss_dssp CTTCEEEEEES
T ss_pred CCCcEEEEeCc
Confidence 76667776643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.59 E-value=3.3 Score=30.89 Aligned_cols=101 Identities=12% Similarity=-0.017 Sum_probs=57.2
Q ss_pred eeeEeecccc-hHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCC-CCceEEEEeCCCCCCCCCCcceeeEec
Q 024100 160 VALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM-HKATNFFCVPLQDFTPETGRYDVIWVQ 237 (272)
Q Consensus 160 ~VLDiGcGtG-~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fDlIvs~ 237 (272)
++.=||+|.- ......|++.+.+|.++|.++.-++..++.-.......... .........|..+. -...|+|++.
T Consensus 3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~iii~ 79 (184)
T d1bg6a2 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVILIV 79 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEEEC
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEEEE
Confidence 6777898843 33333556788999999999988887766421100000000 00001111111110 1358888864
Q ss_pred hhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 238 WCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 238 ~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
- +......+++++...|+++-.++..
T Consensus 80 v-----~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 80 V-----PAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp S-----CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred E-----chhHHHHHHHHhhhccCCCCEEEEe
Confidence 2 2234558999999999998877653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.40 E-value=1.6 Score=31.35 Aligned_cols=89 Identities=13% Similarity=-0.008 Sum_probs=48.6
Q ss_pred eeEeecc-cchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCCCC----CCcceeeE
Q 024100 161 ALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGRYDVIW 235 (272)
Q Consensus 161 VLDiGcG-tG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~fDlIv 235 (272)
++=||+| .|+.....|.+.+..|+++|.+++.++.+++. ....+.+|..+...- -...|.|+
T Consensus 3 ~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-------------~~~~~~gd~~~~~~l~~a~i~~a~~vi 69 (134)
T d2hmva1 3 FAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-------------ATHAVIANATEENELLSLGIRNFEYVI 69 (134)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-------------CSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-------------CCcceeeecccchhhhccCCccccEEE
Confidence 3445665 23333333345688999999999988877542 234566777554321 12567666
Q ss_pred echhhhhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 236 VQWCIGHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 236 s~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+... +++-...+-.+.+.+.+...++.
T Consensus 70 ~~~~-----~~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 70 VAIG-----ANIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp ECCC-----SCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEcC-----chHHhHHHHHHHHHHcCCCcEEe
Confidence 5433 22222344444444556666654
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.27 E-value=2.7 Score=35.77 Aligned_cols=113 Identities=10% Similarity=0.142 Sum_probs=71.4
Q ss_pred CCCeeeEeecccchHHHHHHHhcCCcEEEEeCC-HHHHHHHHHhcccc----------CC-CC----CCCCCceEEEEeC
Q 024100 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPE----------NH-MA----PDMHKATNFFCVP 220 (272)
Q Consensus 157 ~~~~VLDiGcGtG~~t~~LLa~~~~~v~~vD~S-~~mld~A~~~l~~~----------~~-~~----~~~~~~v~~~~~d 220 (272)
+..-|+-+|||.=.....++ ...+++..+|++ |++++.=++.+... .. .. .....+..++.+|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~-~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLL-QMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHH-HHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhh-ccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 34579999999987777775 456788888754 44444322222110 00 00 0013567888889
Q ss_pred CCCCC---------CCCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEEEecCC
Q 024100 221 LQDFT---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLSHSL 271 (272)
Q Consensus 221 ~~~~~---------~~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~E~~ 271 (272)
+.+.. +.....=++++-.|+.|++.++..++++.+.+... +|.+++-|.+
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i 233 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPI 233 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccC
Confidence 87642 11123346778899999999888899999988774 5666666653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=85.38 E-value=1.5 Score=31.60 Aligned_cols=84 Identities=15% Similarity=0.054 Sum_probs=54.5
Q ss_pred cccchHHHHHHHhc-CCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCCC----CCCCcceeeEechhh
Q 024100 166 SGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQWCI 240 (272)
Q Consensus 166 cGtG~~t~~LLa~~-~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fDlIvs~~vl 240 (272)
||.|+++..++... ...+.++|.++..++..+.. .+.++.+|..+-. ..-.+.+.+++..
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-------------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-- 70 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-------------GANFVHGDPTRVSDLEKANVRGARAVIVNL-- 70 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-------------TCEEEESCTTSHHHHHHTTCTTCSEEEECC--
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-------------CccccccccCCHHHHHHhhhhcCcEEEEec--
Confidence 67788888885332 45889999999887766542 4678889876532 1123677777633
Q ss_pred hhcChhhHHHHHHHHHHhcccCcEEEE
Q 024100 241 GHLTDDDFVSFFKRAKENIARSGTFLL 267 (272)
Q Consensus 241 ~hl~d~~~~~~l~~~~r~LkpgG~liv 267 (272)
+++...-++....+.+.|...++.
T Consensus 71 ---~~d~~n~~~~~~~r~~~~~~~iia 94 (129)
T d2fy8a1 71 ---ESDSETIHCILGIRKIDESVRIIA 94 (129)
T ss_dssp ---SSHHHHHHHHHHHHHHCSSSCEEE
T ss_pred ---cchhhhHHHHHHHHHHCCCceEEE
Confidence 234434455556677888876654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.11 E-value=1.5 Score=33.04 Aligned_cols=93 Identities=13% Similarity=-0.055 Sum_probs=56.9
Q ss_pred CCCCCeeeEeecc-cchHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC------CC
Q 024100 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TP 226 (272)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~------~~ 226 (272)
+.++.+||=.||| .|.++..++...+ ..|.++|.++.-++.+++.=. ...+++. +-.+. ..
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa---------~~~i~~~--~~~~~~~~~~~~~ 94 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA---------TECINPQ--DFSKPIQEVLIEM 94 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC---------SEEECGG--GCSSCHHHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC---------cEEEeCC--chhhHHHHHHHHH
Confidence 5678899988877 4556665654455 578888999988898886411 1111111 11111 01
Q ss_pred CCCcceeeEechhhhhcChhhHHHHHHHHHHhcccCcEEE
Q 024100 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKENIARSGTFL 266 (272)
Q Consensus 227 ~~~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~LkpgG~li 266 (272)
..+.+|+|+-.-. .. .+++.+...+++||.++
T Consensus 95 ~~~g~D~vid~~G------~~--~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 95 TDGGVDYSFECIG------NV--KVMRAALEACHKGWGVS 126 (176)
T ss_dssp TTSCBSEEEECSC------CH--HHHHHHHHTBCTTTCEE
T ss_pred cCCCCcEeeecCC------CH--HHHHHHHHhhcCCceeE
Confidence 2246899886533 12 57778888999987654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=83.49 E-value=0.83 Score=35.48 Aligned_cols=90 Identities=11% Similarity=-0.003 Sum_probs=58.3
Q ss_pred CCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC--CCCCCccee
Q 024100 158 HLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (272)
Q Consensus 158 ~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fDl 233 (272)
...||=.| .|.|..+.+++...+.+|+++.-+++..+.+++.=. -.++.-+-.++ ......+|.
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa------------d~vi~~~~~~~~~~l~~~~~~~ 99 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA------------SRVLPRDEFAESRPLEKQVWAG 99 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE------------EEEEEGGGSSSCCSSCCCCEEE
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc------------ccccccccHHHHHHHHhhcCCe
Confidence 34677655 457888888876678899999989888888875421 12222221111 123356787
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+ ..+. . ..+.+..+.|+++|.++..
T Consensus 100 vv-D~Vg------g--~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 100 AI-DTVG------D--KVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp EE-ESSC------H--HHHHHHHHTEEEEEEEEEC
T ss_pred eE-EEcc------h--HHHHHHHHHhccccceEee
Confidence 65 2221 2 4688899999999999864
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=82.52 E-value=0.87 Score=40.13 Aligned_cols=47 Identities=26% Similarity=0.353 Sum_probs=37.7
Q ss_pred CCCCCeeeEeecccchHHHHHHHh---cCCcEEEEeCCHHHHHHHHHhcc
Q 024100 155 NNQHLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLA 201 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG~~t~~LLa~---~~~~v~~vD~S~~mld~A~~~l~ 201 (272)
+.+...++||||-.|..+..++.. .+.+|.++||++...+..++++.
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~ 259 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 259 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 456779999999999988876432 24689999999999998887653
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=81.36 E-value=0.81 Score=35.17 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=59.9
Q ss_pred CCCeeeEee--cccchHHHHHHHhcCCcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCCCC-CCCCCccee
Q 024100 157 QHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (272)
Q Consensus 157 ~~~~VLDiG--cGtG~~t~~LLa~~~~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fDl 233 (272)
+...||=-| .|.|..+.+|+...+.+|+++.-|++-.+.+++.=. ...++.-..+.+.. ....+.+|+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGa---------d~vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA---------SEVISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTC---------SEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcc---------cceEeccchhchhhhcccCCCceE
Confidence 344677666 457888888866678999999988877888876421 11222211111222 123357999
Q ss_pred eEechhhhhcChhhHHHHHHHHHHhcccCcEEEEe
Q 024100 234 IWVQWCIGHLTDDDFVSFFKRAKENIARSGTFLLS 268 (272)
Q Consensus 234 Ivs~~vl~hl~d~~~~~~l~~~~r~LkpgG~liv~ 268 (272)
|+-+-. . ..+.+..+.|+|+|.++..
T Consensus 94 vid~vg-------g--~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 94 AVDPVG-------G--KQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp EEESCC-------T--HHHHHHHTTEEEEEEEEEC
T ss_pred EEecCc-------H--HHHHHHHHHhccCceEEEe
Confidence 775422 2 4778889999999998753
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.06 E-value=4.2 Score=30.77 Aligned_cols=96 Identities=10% Similarity=-0.185 Sum_probs=55.6
Q ss_pred CCCCCeeeEeecccc-hHHHHHHHhcC-CcEEEEeCCHHHHHHHHHhccccCCCCCCCCCceEEEEeCCC--CC--CCCC
Q 024100 155 NNQHLVALDCGSGIG-RITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ--DF--TPET 228 (272)
Q Consensus 155 ~~~~~~VLDiGcGtG-~~t~~LLa~~~-~~v~~vD~S~~mld~A~~~l~~~~~~~~~~~~~v~~~~~d~~--~~--~~~~ 228 (272)
..++.+||=+|||.. ..+..++...+ ..|.++|.++.-++.|++.= ....+++...|.. +. ...+
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lG---------a~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG---------ATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcC---------CcEEEcCCCchhHHHHHHHHhcC
Confidence 567889999999854 44444433344 58999999999999998641 1112222112210 00 0122
Q ss_pred CcceeeEechhhhhcChhhHHHHHHHHHHhccc-CcEEEE
Q 024100 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKENIAR-SGTFLL 267 (272)
Q Consensus 229 ~~fDlIvs~~vl~hl~d~~~~~~l~~~~r~Lkp-gG~liv 267 (272)
+.+|+|+-.-.. . ..+......+++ +|.+++
T Consensus 96 ~G~d~vid~~g~-----~---~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 96 GGVDYAVECAGR-----I---ETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp SCBSEEEECSCC-----H---HHHHHHHHTBCTTTCEEEE
T ss_pred CCCcEEEEcCCC-----c---hHHHHHHHHHHHhcCceEE
Confidence 368887754321 2 456666666655 588765
|