Citrus Sinensis ID: 024112

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCLSS
Secondary Structure (PSIPRED)
ccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHccccEEEEEEccEEEEEEEEccccccccEEEEEEEEEEEEEEEEEEccccccccccccEEEEEEccccEEEcEEccEEEEEcccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccEHHHHEccccEEEEEEEEccc
Coil and Loop (DISEMBL)
mdrrdglalpgsasfymqrgmtgsgsgtqpslhgspgihplsnpslqfqsniggstigstlsvdpssaisphgvnvtasasmpqsepvkrkrgrprkygpdgsvslalspsvsthpgtisptqkrgrgrppgtgrkqQVSSlgeslsgsagmgftphVITVAVGEDIAMKLLSFSQQGPRAICVLSangaistatlrqpsssggsvtyeGRFEILCLSgsyllsgnggsrnrsgglsvslaspdgrvigggVGGMLIAANNVQVTFRLCLSS
Flexible Loop (DISEMBL)
mdrrdglalpgSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGvnvtasasmpqsepvkrkrgrprkygpdgsvslalspsvsthpgtisptqkrgrgrppgTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIStatlrqpsssggsVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCLSS
Low Complexity Region (SEG)
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEpvkrkrgrprkygpdgSVSLALSPSVSTHPGTISptqkrgrgrppgtgrkqqVsslgeslsgsAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEIlclsgsyllsgnggsrnrsgglsvslASPDgrvigggvggMLIAANNVQVTFRLCLSS
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTA***********VTYEGRFEILCLSGSYLLS*******************DGRVIGGGVGGMLIAANNVQVTFRLCL**
Disordered Region (DISOPRED)
******************************************************************************************************************************************************GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGS***************LSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCLS*
Disordered Region (DISEMBL)
********LPGSASFYMQRGM*************SPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVT**************************VSLALSP*************************************GSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTAT**********VTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCLSS
Disordered Region (DISPRO)
**************FY**RGMTGSGSGTQPSLHGSPGIHPLSNPSLQ*******************************************************S**L********************************VSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCLSS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.352	0.308	0.379	8e-08

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 12/108 (11%)

Query: 124 KRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAIC 183
           KR RGRPPG+  K +   +    S +A      HV+ V+ G DI   + +++++  R + 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNA---LRSHVLEVSPGADIVESVSTYARRRGRGVS 142

Query: 184 VLSANGAISTATLRQPSS---------SGGSVTYEGRFEILCLSGSYL 222
           VL  NG +S  TLRQP +          GG VT  GRFEIL L+G+ L
Sbjct: 143 VLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVL 190

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
255541558	340	DNA binding protein, putative [Ricinus c	0.970	0.776	0.803	1e-109
133907524	340	AT-hook DNA-binding protein [Gossypium h	0.970	0.776	0.766	1e-107
225454180	345	PREDICTED: uncharacterized protein LOC10	0.970	0.765	0.795	1e-102
224130232	336	predicted protein [Populus trichocarpa]	0.952	0.770	0.754	9e-96
358249184	341	uncharacterized protein LOC100814615 [Gl	0.959	0.765	0.717	1e-91
224067876	328	predicted protein [Populus trichocarpa]	0.930	0.771	0.708	2e-90
356568374	342	PREDICTED: uncharacterized protein LOC10	0.959	0.763	0.698	5e-89
356504535	340	PREDICTED: uncharacterized protein LOC10	0.970	0.776	0.687	3e-86
356520420	340	PREDICTED: uncharacterized protein LOC10	0.970	0.776	0.676	9e-86
449441474	334	PREDICTED: uncharacterized protein LOC10	0.871	0.709	0.666	4e-85

>gi|255541558|ref|XP_002511843.1| DNA binding protein, putative [Ricinus communis] gi|223549023|gb|EEF50512.1| DNA binding protein, putative [Ricinus communis]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/265 (80%), Positives = 243/265 (91%), Gaps = 1/265 (0%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +A+ GSASFYMQRGMTGSGSGTQ  L+ S GI+PL++ ++ FQSN+G +TIGST
Sbjct: 1   MDRRDAMAMSGSASFYMQRGMTGSGSGTQSGLNVSSGINPLTSTNVSFQSNVGANTIGST 60

Query: 61  LSVDPSSAISPHGVNVTASASMPQ-SEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           L ++ S+AI PHGVNV AS+ MP   EPVKRKRGRPRKYGPDG+VSLALSPS+STHPGTI
Sbjct: 61  LPLETSTAIPPHGVNVGASSLMPPPGEPVKRKRGRPRKYGPDGTVSLALSPSLSTHPGTI 120

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +PTQKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGP
Sbjct: 121 TPTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGP 180

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVS 239
           RAIC+LSANGA+ST TLRQPS+SGGSVTYEGRFEILCLSGSYL++ NGGSRNR+GGLSVS
Sbjct: 181 RAICILSANGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLVTSNGGSRNRTGGLSVS 240

Query: 240 LASPDGRVIGGGVGGMLIAANNVQV 264
           LASPDGRVIGGGVGGMLIAA+ VQV
Sbjct: 241 LASPDGRVIGGGVGGMLIAASPVQV 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133907524|gb|ABO42262.1| AT-hook DNA-binding protein [Gossypium hirsutum]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/265 (76%), Positives = 236/265 (89%), Gaps = 1/265 (0%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDRRD +AL GSAS+YMQ RG+TGSGSGTQ  +HGSPGIHPLS+P++Q+QS+I  +T+G+
Sbjct: 1   MDRRDAMALSGSASYYMQQRGITGSGSGTQSGVHGSPGIHPLSSPNVQYQSSISATTMGA 60

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           TL V+P S I+PH VNV    ++   E VKRKRGRPRKYGPDG+VSLAL+P+ +THPGTI
Sbjct: 61  TLPVEPLSGITPHNVNVGTPPAVQPGETVKRKRGRPRKYGPDGTVSLALTPASATHPGTI 120

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +P QKRGRGRPPGTGRKQQ+SSLGE LSGSAGMGFTPHVIT+A+GEDIA KL+SFSQQGP
Sbjct: 121 TPIQKRGRGRPPGTGRKQQLSSLGELLSGSAGMGFTPHVITIAIGEDIATKLMSFSQQGP 180

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVS 239
           R +C+LSANGA+ST TLR+PSSSGG+VTYEGRFEILCLSGSYLL+ N GSRNR+GGLSVS
Sbjct: 181 REVCILSANGAVSTVTLRKPSSSGGTVTYEGRFEILCLSGSYLLTSNTGSRNRTGGLSVS 240

Query: 240 LASPDGRVIGGGVGGMLIAANNVQV 264
           LASPDGR IGGGVGGMLIAA+ VQV
Sbjct: 241 LASPDGRAIGGGVGGMLIAASPVQV 265

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454180|ref|XP_002272142.1| PREDICTED: uncharacterized protein LOC100265498 [Vitis vinifera] gi|297745264|emb|CBI40344.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/269 (79%), Positives = 239/269 (88%), Gaps = 5/269 (1%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGT--QPSLHGSPGIHPLSNPSLQFQSNIGGS-TI 57
           MDRRD +A+PGS S+YMQRGM GSGSG+  QP LHGSPGI  LSNPS+ FQ NIGG  ++
Sbjct: 1   MDRRDAMAMPGSGSYYMQRGMAGSGSGSGPQPGLHGSPGIRSLSNPSMPFQPNIGGGGSM 60

Query: 58  GSTLSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHP 116
           GSTL V+PSS IS HGVNV A S  +P SEPVKRKRGRPRKYGPDG+VSLALSPS +T P
Sbjct: 61  GSTLPVEPSSVISTHGVNVGAPSTLLPPSEPVKRKRGRPRKYGPDGTVSLALSPSSATSP 120

Query: 117 GTISP-TQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFS 175
           GT++  TQKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPHVITVAVGED+A K++SFS
Sbjct: 121 GTLTASTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHVITVAVGEDVATKIMSFS 180

Query: 176 QQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGG 235
           QQGPRAIC+LSANGA+ST TLRQPS+SGG+VTYEGRFEILCLSGSYLL+ NGGSRNR+GG
Sbjct: 181 QQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTDNGGSRNRTGG 240

Query: 236 LSVSLASPDGRVIGGGVGGMLIAANNVQV 264
           LSVSLASPDGRVIGGGVGGML AA+ VQV
Sbjct: 241 LSVSLASPDGRVIGGGVGGMLTAASPVQV 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130232|ref|XP_002320785.1| predicted protein [Populus trichocarpa] gi|222861558|gb|EEE99100.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (912), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 200/265 (75%), Positives = 233/265 (87%), Gaps = 6/265 (2%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +A+ GSASFYM RG+T SGS     ++ S  I+ LSN ++ FQ NIG +T+GST
Sbjct: 1   MDRRDAMAISGSASFYMHRGITSSGS-----MNVSSNINTLSNTNVAFQPNIGANTMGST 55

Query: 61  LSVDPSSAISPHGVNVTASASMPQS-EPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           L ++   AISPHGVNV   ++MP S EPVKRKRGRPRKYGPDG+VSLALS S+STHPGTI
Sbjct: 56  LPMEHPVAISPHGVNVGVPSTMPPSGEPVKRKRGRPRKYGPDGAVSLALSSSLSTHPGTI 115

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +P+QKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGP
Sbjct: 116 TPSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGP 175

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVS 239
           RA+C+LSANGA+ST TLRQPS+SGG+VTYEGRFEILCLSGSYLL+ +GGSRNRSGGLSVS
Sbjct: 176 RAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTNDGGSRNRSGGLSVS 235

Query: 240 LASPDGRVIGGGVGGMLIAANNVQV 264
           LASPDGRVIGGGVGG+LIAA+ VQV
Sbjct: 236 LASPDGRVIGGGVGGVLIAASPVQV 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249184|ref|NP_001239751.1| uncharacterized protein LOC100814615 [Glycine max] gi|255636132|gb|ACU18409.1| unknown [Glycine max]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/269 (71%), Positives = 227/269 (84%), Gaps = 8/269 (2%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDR D +AL GS  +YMQ RG+ GSG   QP LH SP + PLSNP+L FQS+IGG TIGS
Sbjct: 1   MDRGDQMALSGS--YYMQQRGIPGSGG--QPELHISPNMRPLSNPNLPFQSSIGGGTIGS 56

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPS--VSTHPG 117
           TL ++ SSAIS HGVNV A    P  EPVKRKRGRPRKYG DGSVSLAL+P+   S+HPG
Sbjct: 57  TLPLE-SSAISAHGVNVGAPTGAPLGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSHPG 115

Query: 118 TISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ 177
            +S +QKRGRGRPPGTG+KQQ++SLGE +SGSAGMGFTPH+I +A GEDIA K+++FSQQ
Sbjct: 116 ALSQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQ 175

Query: 178 GPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLS 237
           GPR +C+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSYL++ NGGSRNR+GGLS
Sbjct: 176 GPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTENGGSRNRTGGLS 235

Query: 238 VSLASPDGRVIGGGVGGMLIAANNVQVTF 266
           VSLASPDGRVIGGGVGG+LIA++ VQV  
Sbjct: 236 VSLASPDGRVIGGGVGGVLIASSPVQVVV 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067876|ref|XP_002302577.1| predicted protein [Populus trichocarpa] gi|222844303|gb|EEE81850.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/264 (70%), Positives = 219/264 (82%), Gaps = 11/264 (4%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD + + GSASF+MQ      GSGT PSL+ S GI+ LSN +  FQ N+G +T+GS 
Sbjct: 1   MDRRDTMTISGSASFFMQ------GSGTHPSLNVSSGINTLSNINAPFQPNMGANTMGSA 54

Query: 61  LSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTIS 120
           L ++  +AIS     V   ++M   +P KRKRGRPRKYGPDG+VSLALSPS+STHP T  
Sbjct: 55  LLMEHPAAIS-----VGELSTMVSGQPEKRKRGRPRKYGPDGAVSLALSPSLSTHPETSI 109

Query: 121 PTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR 180
           P+QKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGPR
Sbjct: 110 PSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPR 169

Query: 181 AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSL 240
           AIC+LSANGA+ST TL QPS+SGG+VTYEGRFEILCLSGSYL S +GGSRNR+GGLSVSL
Sbjct: 170 AICILSANGAVSTVTLHQPSTSGGTVTYEGRFEILCLSGSYLFSNDGGSRNRTGGLSVSL 229

Query: 241 ASPDGRVIGGGVGGMLIAANNVQV 264
           ASPDG VIGGGVGG+LIAA+ VQV
Sbjct: 230 ASPDGCVIGGGVGGVLIAASPVQV 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568374|ref|XP_003552386.1| PREDICTED: uncharacterized protein LOC100802542 isoform 1 [Glycine max] gi|356568376|ref|XP_003552387.1| PREDICTED: uncharacterized protein LOC100802542 isoform 2 [Glycine max]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 188/269 (69%), Positives = 226/269 (84%), Gaps = 8/269 (2%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDR D +AL  S S+YMQ RG+ GSG+   P LH SP + P+SNP+L FQS+IGG TIGS
Sbjct: 1   MDRGDQMAL--SGSYYMQQRGIPGSGA--PPELHISPNMRPISNPNLPFQSSIGGGTIGS 56

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPS--VSTHPG 117
           TL ++ SSAIS HGVNV A    P  EPVKRKRGRPRKYG DGSVSLAL+P+   S++PG
Sbjct: 57  TLPLE-SSAISAHGVNVGAPTGAPPGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSYPG 115

Query: 118 TISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ 177
            ++ +QKRGRGRPPGTG+KQQ++SLGE +SGSAGMGFTPH+I +A GEDI  K+++FSQQ
Sbjct: 116 ALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDITTKIMAFSQQ 175

Query: 178 GPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLS 237
           G RA+C+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSYL++ NGGSRNR+GGLS
Sbjct: 176 GARAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDNGGSRNRTGGLS 235

Query: 238 VSLASPDGRVIGGGVGGMLIAANNVQVTF 266
           VSLASPDGRVIGGGVGG+LIA++ VQV  
Sbjct: 236 VSLASPDGRVIGGGVGGVLIASSPVQVVV 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504535|ref|XP_003521051.1| PREDICTED: uncharacterized protein LOC100783475 [Glycine max]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/266 (68%), Positives = 221/266 (83%), Gaps = 2/266 (0%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDR D + LPGSAS+YMQRG+ G+G+  QP LH SP I PLSNP+L  QS+IGG     +
Sbjct: 1   MDRGDQMTLPGSASYYMQRGIPGAGN--QPVLHNSPNIGPLSNPNLPCQSSIGGGGTIGS 58

Query: 61  LSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTIS 120
                SS IS   VNV+A +     E VKRKRGRPRKYG DG+VSLAL+P+ ++HPG ++
Sbjct: 59  TLPLESSGISAPCVNVSAPSGTLPGETVKRKRGRPRKYGSDGAVSLALTPTPASHPGALA 118

Query: 121 PTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR 180
             QKRGRGRPPG+G+KQQ++SLGE +SGSAGMGFTPH+IT+AVGEDIA K++SFSQQGPR
Sbjct: 119 QGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPR 178

Query: 181 AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSL 240
           AIC+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSYL++ +GGSRNR+GGLSVSL
Sbjct: 179 AICILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVADSGGSRNRTGGLSVSL 238

Query: 241 ASPDGRVIGGGVGGMLIAANNVQVTF 266
           ASPDGRV+GGGVGG+LIAA+ VQV  
Sbjct: 239 ASPDGRVVGGGVGGVLIAASPVQVIL 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520420|ref|XP_003528860.1| PREDICTED: uncharacterized protein LOC100799791 [Glycine max]

 Score =  322 bits (825), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 180/266 (67%), Positives = 219/266 (82%), Gaps = 2/266 (0%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDR D +  PGSAS+YMQRG+ G+G+  QP LH SP I PLSN +L FQS+IGG     +
Sbjct: 1   MDRGDQMTFPGSASYYMQRGIPGAGN--QPELHNSPNIRPLSNSNLPFQSSIGGGGTIGS 58

Query: 61  LSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTIS 120
                SS IS   VNV+A +     E VKRKRGRPRKYGPDG+VSLAL+P+ ++HPG ++
Sbjct: 59  TLPLESSGISAPCVNVSAPSGAVPGETVKRKRGRPRKYGPDGAVSLALTPTPASHPGALA 118

Query: 121 PTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR 180
             QKRGRGRPPG+G+KQQ++SLGE +SGSAGMGFTPH+IT+AVGEDIA K+++FSQQGPR
Sbjct: 119 QGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPR 178

Query: 181 AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSL 240
           AIC+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSYL++ +GG+RNR+  LSVSL
Sbjct: 179 AICILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVADSGGTRNRTVALSVSL 238

Query: 241 ASPDGRVIGGGVGGMLIAANNVQVTF 266
           ASPDGRVIGGGVGG+LIAA+ VQV  
Sbjct: 239 ASPDGRVIGGGVGGVLIAASPVQVIL 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441474|ref|XP_004138507.1| PREDICTED: uncharacterized protein LOC101203138 [Cucumis sativus]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 164/246 (66%), Positives = 201/246 (81%), Gaps = 9/246 (3%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +AL GS SFYMQRG++ SGSG Q       G+   +NP++ FQ+N GG+ +GS 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGAQ-------GLRSSTNPNVAFQTNTGGNNVGSG 53

Query: 61  LSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVS-THPGT 118
           L +DP+S ISP+G NV A S  +  SEPVKRKRGRPRKYG +G+VSLALSPS S  +P T
Sbjct: 54  LPMDPNSGISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAT 113

Query: 119 ISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQG 178
           ++ + KRGRGRPPG+G+KQQ++SL E+LSGSAGMGFTPHVIT+ +GED+A K++SFSQQG
Sbjct: 114 VASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQG 173

Query: 179 PRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSV 238
           PR +C+LSANGA+ST TLRQPS+SGG+VTYEGRFEI+CLSGSY L    GSRNR+GGLSV
Sbjct: 174 PRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEIAGSRNRTGGLSV 233

Query: 239 SLASPD 244
           SLASPD
Sbjct: 234 SLASPD 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.944	0.738	0.397	2.7e-36
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.955	0.734	0.384	5.1e-35
TAIR|locus:2031306	361	AT1G63480 [Arabidopsis thalian	0.419	0.315	0.426	4.3e-26
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.419	0.324	0.456	1.3e-25
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.419	0.301	0.408	5.2e-25
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.419	0.320	0.508	5.9e-25
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.419	0.358	0.5	4.2e-24
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.408	0.264	0.450	1.1e-22
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.422	0.344	0.452	5.5e-22
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.419	0.282	0.447	1.7e-20

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 111/279 (39%), Positives = 137/279 (49%)

Query:     1 MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSP----GIHPLSNPSLQFQSNIGGST 56
             MDRRD + L GS S+Y+ RG++GSG    P+ HGSP    G+  L N +  F S  G + 
Sbjct:     1 MDRRDAMGLSGSGSYYIHRGLSGSGP---PTFHGSPQQQQGLRHLPNQNSPFGS--GSTG 55

Query:    57 IGS-TLSVDPSSAIS-------PH--GVNVTASASMPQSEXXXXXXXXXXXXXXXXSVSL 106
              GS +L  DPS A +       PH  GVN+ A    P                   SVSL
Sbjct:    56 FGSPSLHGDPSLATAAGGAGALPHHIGVNMIAPPPPPSETPMKRKRGRPRKYGQDGSVSL 115

Query:   107 ALSPS-VSTHPGTISXXXXXXXXXXXXXXXXXXVXXXXXXXXXXAGMGFTPHVITVAVGE 165
             ALS S VST   T +                  +          +GM FTPHVI V++GE
Sbjct:   116 ALSSSSVSTI--TPNNSNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTPHVIAVSIGE 173

Query:   166 DIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEIXXXXXXXXXXX 225
             DIA K+++FSQQGPRAICVLSA+GA+STATL QPS+S G++ YEGRFEI           
Sbjct:   174 DIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYEGRFEILALSTSYIVAT 233

Query:   226 XXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
                            ASPD           LIAA+ VQV
Sbjct:   234 DGSFRNRTGNLSVSLASPDGRVIGGAIGGPLIAASPVQV 272

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 107/278 (38%), Positives = 130/278 (46%)

Query:     1 MDRRDGLALPGSASFYMQRGMTGSGSG---TQPSLHGSPGIHPLSNPSLQFQSNI----- 52
             MDRRD +AL GS S+Y+QRG+ GSG     TQP+ HGS G H  +N    F SN      
Sbjct:     1 MDRRDAMALSGSGSYYIQRGIPGSGPPPPQTQPTFHGSQGFHHFTNSISPFGSNPNPNPN 60

Query:    53 -GG-ST--IGSTLSVDPSSAISPHGVNVTASASMPQSEXXXXXXXXX--XXXXXXXSVSL 106
              GG ST  +   L VD S A S       A  + P  +                  SVSL
Sbjct:    61 PGGVSTGFVSPPLPVDSSPADSSAAA-AGALVAPPSGDTSVKRKRGRPRKYGQDGGSVSL 119

Query:   107 ALSPSVSTHPGTISXXXXXXXXXXXXXXXXXXVXXXXXXXXXXAGMGFTPHVITVAVGED 166
             ALSPS+S      +                  +           GM FTPHVI V++GED
Sbjct:   120 ALSPSISNVSPNSNKRGRGRPPGSGKKQRLSSIGEMMPSST---GMSFTPHVIVVSIGED 176

Query:   167 IAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEIXXXXXXXXXXXX 226
             IA K++SFS QGPRAICVLSA+GA+STATL QP+ S G++ YEG FE+            
Sbjct:   177 IASKVISFSHQGPRAICVLSASGAVSTATLLQPAPSHGTIIYEGLFELISLSTSYLNTTD 236

Query:   227 XXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
                           ASPD           LIAA+ VQV
Sbjct:   237 NDYPNRTGSLAVSLASPDGRVIGGGIGGPLIAASQVQV 274

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031306 AT1G63480 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
 Identities = 49/115 (42%), Positives = 61/115 (53%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             AG+ F PHVI++  GEDIA K+LSFSQQ PRA+C++S  G IS+ TL +P S+   +TYE
Sbjct:   156 AGLAFAPHVISIGAGEDIAAKVLSFSQQRPRALCIMSGTGTISSVTLCKPGSTDRHLTYE 215

Query:   210 GRFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
             G FEI                          + PD          MLIAAN VQV
Sbjct:   216 GPFEIISFGGSYLVNEEGGSRSRTGGLSVSLSRPDGSIIAGGVD-MLIAANLVQV 269

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
 Identities = 52/114 (45%), Positives = 68/114 (59%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEG 210
             G+GFTPHV+TV  GED++ K+++ +  GPRA+CVLSANGAIS  TLRQ ++SGG+VTYEG
Sbjct:   160 GIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEG 219

Query:   211 RFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
             RFEI                          +SPD          +LIAA+ VQ+
Sbjct:   220 RFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDGNVLGGSVAGLLIAASPVQI 273

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
 Identities = 47/115 (40%), Positives = 64/115 (55%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             AG+ F PHVI+V  GEDI  K+LSFSQ+ PRA+C++S  G +S+ TLR+P+S+  S+T+E
Sbjct:   173 AGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSVTLREPASTTPSLTFE 232

Query:   210 GRFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
             GRFEI                          + P+          MLIAA+ VQV
Sbjct:   233 GRFEILSLGGSYLVNEEGGSKSRTGGLSVSLSGPEGHVIGGGIG-MLIAASLVQV 286

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 58/114 (50%), Positives = 69/114 (60%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEG 210
             G  FTPH+ITV  GED+ MK++SFSQQGPR+ICVLSANG IS+ TLRQP SSGG++TYEG
Sbjct:   167 GGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTYEG 226

Query:   211 RFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
             RFEI                          ASPD          +L+AA+ VQV
Sbjct:   227 RFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAASPVQV 280

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 57/114 (50%), Positives = 65/114 (57%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEG 210
             G  FTPHVITV  GEDI M+++SFSQQGPRAIC+LSANG IS  TLRQP S GG++TYEG
Sbjct:   120 GSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYEG 179

Query:   211 RFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
             RFEI                          A PD          +LIAA  +QV
Sbjct:   180 RFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQV 233

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 50/111 (45%), Positives = 60/111 (54%)

Query:   154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFE 213
             FTPHV+TV  GED+ MK+++FSQQG RAIC+LSANG IS  TLRQ  +SGG++TYEG FE
Sbjct:   178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEGHFE 237

Query:   214 IXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
             I                          A  D          + IAA  VQV
Sbjct:   238 ILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQV 288

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 52/115 (45%), Positives = 64/115 (55%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             A   FTPH+ITV  GED+  +++SFSQQG  AICVL ANG +S+ TLRQP SSGG++TYE
Sbjct:   146 AAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYE 205

Query:   210 GRFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
             GRFEI                          ASPD          +L+AA  +QV
Sbjct:   206 GRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAATPIQV 260

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 51/114 (44%), Positives = 62/114 (54%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEG 210
             G  FTPHV+ V  GED+ MK+++FSQQG RAIC+LSANG IS  TLRQ  +SGG++TYEG
Sbjct:   163 GANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEG 222

Query:   211 RFEIXXXXXXXXXXXXXXXXXXXXXXXXXXASPDXXXXXXXXXXMLIAANNVQV 264
             RFEI                          A PD          + +AA  VQV
Sbjct:   223 RFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPDGRVFGGGLAGLFLAAGPVQV 276

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	4e-34
cd11378	113	cd11378, DUF296, Domain of unknown function found	7e-29
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	0.001

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  119 bits (301), Expect = 4e-34
 Identities = 53/116 (45%), Positives = 65/116 (56%), Gaps = 9/116 (7%)

Query: 154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPS---SSGGSVTYEG 210
             PHV+ +  GED+   L +F++Q      VLS  GA+S  TLRQP     S G VT EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 211 RFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGV-GGMLIAANNVQVT 265
           RFEIL LSG+    G       SG L VSLA PDG+V+GG +  G + A   V VT
Sbjct: 61  RFEILSLSGTISPGG-----KPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVT 111

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  105 bits (265), Expect = 7e-29
 Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 7/107 (6%)

Query: 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSS---SGGSVTYEGR 211
            P V+ +  GED+   L +F+++      VLS  GA+S ATLR P        +VT+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 212 FEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIA 258
            EIL LSG+            SG L VSLA  DGRVIGG + G L+A
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGALVA 103

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 157 HVITVAV--GEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGGSVTYEGR 211
            VI + +  GED+  +L +F++Q      V++A GA+  A LR          ++     
Sbjct: 10  RVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEP 69

Query: 212 FEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGG 250
            E+L L G+  ++ +    +    L  +L   +G  +GG
Sbjct: 70  LEVLSLLGN--IALDDPFVH----LHAALGDENGITLGG 102

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.95
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.87
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.42
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.37
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	84.09

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.95  E-value=1.3e-27  Score=195.29  Aligned_cols=113  Identities=31%  Similarity=0.388  Sum_probs=98.9

Q ss_pred             ceEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCC--CCCceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112          154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSS--SGGSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (272)
Q Consensus       154 ~~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s--~~~tvt~eG~FEILSLsGt~~~~~~~~~~~  231 (272)
                      |++|++||++||||+++|++||+++++..|+++++|++++|+|++++.  .....+|+|+|||+||+|||...++    .
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence            789999999999999999999999999888999999999999999843  3457899999999999999998433    2


Q ss_pred             CCCceEEEEeCCCCeEEeeecC-cceEeecceEEEEEEcc
Q 024112          232 RSGGLSVSLASPDGRVIGGGVG-GMLIAANNVQVTFRLCL  270 (272)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~-G~LIAAtpVqVvv~sF~  270 (272)
                      ++.||||+|+|.||+|+||||. |.++++..|+|+..++.
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~~~~~  116 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTVFATAEVVITELSGI  116 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEEETTE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEEeEEEEEEEEEecCc
Confidence            6679999999999999999999 88878888888877664

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.87  E-value=2e-21  Score=165.02  Aligned_cols=109  Identities=23%  Similarity=0.274  Sum_probs=98.9

Q ss_pred             CceEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCC---CceeEeeceEEEEeeceeeeCCCCCC
Q 024112          153 GFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGS  229 (272)
Q Consensus       153 ~~~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~---~tvt~eG~FEILSLsGt~~~~~~~~~  229 (272)
                      .=+-+++||++|||+.+.|.+||+++++..++++|+|++++++||+++..+   .++++.++||||||.|||..++    
T Consensus         8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~----   83 (141)
T COG1661           8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD----   83 (141)
T ss_pred             cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC----
Confidence            346899999999999999999999999988999999999999999998433   4788999999999999999987    


Q ss_pred             CCCCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEE
Q 024112          230 RNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRL  268 (272)
Q Consensus       230 ~~~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~s  268 (272)
                        +..|||++|++++|+++||||.+..+-. ++||++.-
T Consensus        84 --p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~e  119 (141)
T COG1661          84 --PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRE  119 (141)
T ss_pred             --CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEE
Confidence              4569999999999999999999888777 99998864

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.42  E-value=0.0011  Score=35.81  Aligned_cols=12  Identities=75%  Similarity=1.140  Sum_probs=4.3

Q ss_pred             cccCCCCCCCCC
Q 024112           89 KRKRGRPRKYGP  100 (272)
Q Consensus        89 KkKRGRPRKY~p  100 (272)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            589999999764

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.37  E-value=0.0018  Score=41.08  Aligned_cols=15  Identities=67%  Similarity=0.948  Sum_probs=13.0

Q ss_pred             cccCCCCCCCCCCCC
Q 024112           89 KRKRGRPRKYGPDGS  103 (272)
Q Consensus        89 KkKRGRPRKY~pdg~  103 (272)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999998764

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=84.09  E-value=0.37  Score=43.60  Aligned_cols=12  Identities=75%  Similarity=1.107  Sum_probs=10.4

Q ss_pred             cccccCCCCCCC
Q 024112           87 PVKRKRGRPRKY   98 (272)
Q Consensus        87 ~~KkKRGRPRKY   98 (272)
                      -.|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            489999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	4e-21
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	4e-21
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	2e-14
3htn_A	149	Putative DNA binding protein; DUF269 family protei	2e-07
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	5e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-05
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	1e-04

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 85.8 bits (212), Expect = 4e-21
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 156 PHVITVAVGEDIAMKLLSF-SQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEGRFEI 214
              + +  G D+  +++    Q    A  + S  G +ST  +R    S  ++     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLA-DSVSTLQVSAPFEI 62

Query: 215 LCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFR 267
           L LSG+               L +++A   GRV GG +    +     ++   
Sbjct: 63  LSLSGTLTYQHC--------HLHIAVADAQGRVWGGHLLEGNLINTTAELMIH 107

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 85.9 bits (212), Expect = 4e-21
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 147 SGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ-GPRAICVLSANGAISTATLRQPSSSGGS 205
           S         + + +  G+++  +L +F QQ   RA  +    G+++   LR       +
Sbjct: 11  SHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYA-GQEAT 69

Query: 206 VTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQV 264
            +  G FE++ L+G+  L+G          L ++++ P G ++GG +         +++
Sbjct: 70  TSLTGTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVRTTLEL 120

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 67.7 bits (165), Expect = 2e-14
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 156 PHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGGSVTYEGRF 212
            ++  V  GE++   + +F ++      +++  G +    +    +       +  +G +
Sbjct: 11  TYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSY 70

Query: 213 EILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAA 259
           E++ L G+  L              VSL + +G V GG +    +  
Sbjct: 71  ELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFV 113

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 157 HVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGGSVTYEGRFE 213
           +++++    +I   L +F ++       ++  GAI   TLR     + +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 214 ILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAA 259
           I  L+G+               L +++   D   + G +   +   
Sbjct: 78  ISNLTGNISSMNE----QVYLHLHITVGRSDYSALAGHLLSAIQNG 119

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 157 HVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGS---VTYEGRFE 213
            ++ +  G+D+  ++  F ++       +SA GA+ +A +                   E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 214 ILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGG 250
           IL LSG+  +  +         + V L   DG V GG
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGG 103

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 5/29 (17%), Positives = 16/29 (55%)

Query: 84  QSEPVKRKRGRPRKYGPDGSVSLALSPSV 112
           + + +K+ +   + Y  D + +LA+  ++
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKATM 46

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 6/98 (6%)

Query: 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR--QPSSSGGSVTYEGRF 212
           T +++ +  G+++   L   ++            G +S AT                   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 213 EILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGG 250
           E+  ++GS            S     ++     +  GG
Sbjct: 73  EMANMTGSIAWKEG----KPSIHAHGTVTDGTFQGAGG 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.94
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.93
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.92
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.88
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.22

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=2.5e-26  Score=191.80  Aligned_cols=108  Identities=23%  Similarity=0.319  Sum_probs=97.0

Q ss_pred             ceEEEEEecCCCcHHHHHHHHHHhCCc-eEEEEeeeceeeeEEEecCCCCCCceeEeeceEEEEeeceeeeCCCCCCCCC
Q 024112          154 FTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNR  232 (272)
Q Consensus       154 ~~phVIrV~~GEDV~~kI~~faqq~~~-aicILSa~GsVSnVTLRqp~s~~~tvt~eG~FEILSLsGt~~~~~~~~~~~~  232 (272)
                      |++|++||++||||.++|.+||+++++ +.||++++|++++++||+++.. .+++|+|+|||+||+|||.+. .      
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-~------   73 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-H------   73 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-C------
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-C------
Confidence            789999999999999999999999886 8999999999999999999964 478899999999999999985 1      


Q ss_pred             CCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEcc
Q 024112          233 SGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCL  270 (272)
Q Consensus       233 ~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~  270 (272)
                       .||||+++|+||+|+||||.+..+...++||++..|.
T Consensus        74 -~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~  110 (142)
T 2p6y_A           74 -CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYP  110 (142)
T ss_dssp             -EEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECT
T ss_pred             -CEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEcc
Confidence             5999999999999999999964555789999998764

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.94  E-value=2.5e-26  Score=194.22  Aligned_cols=113  Identities=18%  Similarity=0.314  Sum_probs=101.2

Q ss_pred             CCCCCceEEEEEecCCCcHHHHHHHHHHhCCc-eEEEEeeeceeeeEEEecCCCCCCceeEeeceEEEEeeceeeeCCCC
Q 024112          149 SAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNG  227 (272)
Q Consensus       149 ~~g~~~~phVIrV~~GEDV~~kI~~faqq~~~-aicILSa~GsVSnVTLRqp~s~~~tvt~eG~FEILSLsGt~~~~~~~  227 (272)
                      +.++.+++|++||++||||+++|.+||+++++ +.|||+++|++++++||+++... +++|+|+|||+||+|||++. . 
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-~-   89 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT-G-   89 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT-E-
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC-C-
Confidence            56678999999999999999999999998885 89999999999999999998644 78899999999999999985 1 


Q ss_pred             CCCCCCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEcc
Q 024112          228 GSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCL  270 (272)
Q Consensus       228 ~~~~~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~  270 (272)
                            .||||+|+|.||+|+||||.+..+...++||++..|.
T Consensus        90 ------~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~  126 (154)
T 2hx0_A           90 ------EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELP  126 (154)
T ss_dssp             ------EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECT
T ss_pred             ------CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEcc
Confidence                  5999999999999999999975555589999998763

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.94  E-value=1.3e-26  Score=193.11  Aligned_cols=110  Identities=15%  Similarity=0.225  Sum_probs=97.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCC---CceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (272)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~---~tvt~eG~FEILSLsGt~~~~~~~~~~~  231 (272)
                      ++|++||++||||+++|.+||+++++..|+++++|++++|+||+++...   ..++++|+|||+||+|||.+.++.    
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~----   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE----   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence            6999999999999999999999999876677999999999999997644   368899999999999999997542    


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEcc
Q 024112          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCL  270 (272)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~  270 (272)
                      ++.||||+|+|+||+|+||||...+ .. ++||++..|.
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~  122 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELK  122 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEE
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcC
Confidence            6789999999999999999999777 45 8889888764

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.93  E-value=5.1e-26  Score=190.04  Aligned_cols=110  Identities=20%  Similarity=0.218  Sum_probs=97.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCC---CceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (272)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~---~tvt~eG~FEILSLsGt~~~~~~~~~~~  231 (272)
                      ++|++||++||||+++|.+||+++++..|+++++|++++++||+++...   .+++++|+|||+||+|||.+.++    .
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg----~   85 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----K   85 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC----C
Confidence            5999999999999999999999998765556999999999999998655   37889999999999999999654    2


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccc
Q 024112          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCLS  271 (272)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~~  271 (272)
                      ++.||||+|+ .||+|+||||.+.+|  .++||++..|..
T Consensus        86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~  122 (146)
T 2h6l_A           86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSG  122 (146)
T ss_dssp             EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBS
T ss_pred             ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCC
Confidence            6789999999 999999999998776  699999988753

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.92  E-value=2.8e-25  Score=186.93  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=97.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCC---CceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (272)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~---~tvt~eG~FEILSLsGt~~~~~~~~~~~  231 (272)
                      +.+++||++||||+++|.+||+++++..|+++++|++++|+||+++...   ..++|+|+|||+||+||+++.++    .
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence            6899999999999999999999999877777999999999999987533   26789999999999999999754    2


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEc
Q 024112          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLC  269 (272)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF  269 (272)
                      +..||||+|+|+||+|+||||... ++..++||++.-+
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~  128 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDY  128 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEEC
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEc
Confidence            678999999999999999999977 5578889998754

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.88  E-value=2.8e-22  Score=168.11  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=95.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCC---CceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN  231 (272)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~---~tvt~eG~FEILSLsGt~~~~~~~~~~~  231 (272)
                      +-+++||++||||+++|.+||+++++..++++++|++++++|+.++...   ...+++ ++||+||+||+++.++    .
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence            3589999999999999999999999987888999999999999887533   256788 8999999999998664    2


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEc
Q 024112          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLC  269 (272)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF  269 (272)
                      ++.|||++++|.||+|+||||....|.+.++||++..+
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~  125 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY  125 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc
Confidence            67899999999999999999997766656999998753

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.22  E-value=0.00014  Score=44.76  Aligned_cols=17  Identities=59%  Similarity=0.954  Sum_probs=14.9

Q ss_pred             CcCcCCCCCCCCCCCCc
Q 024112          121 PTQKRGRGRPPGTGRKQ  137 (272)
Q Consensus       121 ~~~kr~RGRP~GS~nK~  137 (272)
                      +..||+||||.|||||.
T Consensus         2 ptpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            2 PTPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             CSCCCCSSCCTTCCCCS
T ss_pred             CCCcCCCCCcCcccccC
Confidence            45799999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	6e-18
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	2e-13

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 75.7 bits (186), Expect = 6e-18
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 147 SGSAGMGFTPHVITVAVGEDIAMKLLSFS-QQGPRAICVLSANGAISTATLRQPSSSGGS 205
           + S       + + +  G+++  +L +F  Q   RA  +    G+++   LR       +
Sbjct: 2   NASTA---RFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EAT 57

Query: 206 VTYEGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQV 264
            +  G FE++ L+G+  L+G          L ++++ P G ++GG +         +++
Sbjct: 58  TSLTGTFEVISLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTTLEL 108

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 157 HVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGGSVTYEGRFE 213
            ++ +  G+D+  ++  F ++       +SA GA+ +A +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 214 ILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVT 265
           IL LSG+  +  +         + V L   DG V GG +    + A  V V 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVL 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.94
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.88

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=2.5e-26  Score=188.76  Aligned_cols=111  Identities=19%  Similarity=0.341  Sum_probs=102.5

Q ss_pred             CCCceEEEEEecCCCcHHHHHHHHHHhCCc-eEEEEeeeceeeeEEEecCCCCCCceeEeeceEEEEeeceeeeCCCCCC
Q 024112          151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGS  229 (272)
Q Consensus       151 g~~~~phVIrV~~GEDV~~kI~~faqq~~~-aicILSa~GsVSnVTLRqp~s~~~tvt~eG~FEILSLsGt~~~~~~~~~  229 (272)
                      ++..+.|++||++||||+++|.+||+++++ +.||++++|++++|+|++++. .....++|+|||+||+|||.+.+.   
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~~~---   78 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELTGE---   78 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETTEE---
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccCCC---
Confidence            467899999999999999999999999885 899999999999999999985 456689999999999999998763   


Q ss_pred             CCCCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEcc
Q 024112          230 RNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCL  270 (272)
Q Consensus       230 ~~~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~  270 (272)
                           |||++|+|.||+|+||||.+.++++.++||++..|.
T Consensus        79 -----HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~  114 (136)
T d2hx0a1          79 -----HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELP  114 (136)
T ss_dssp             -----EEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECT
T ss_pred             -----eEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEcc
Confidence                 999999999999999999988999999999999874

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=5.2e-23  Score=168.00  Aligned_cols=109  Identities=21%  Similarity=0.233  Sum_probs=95.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEecCCCCCC---ceeEeeceEEEEeeceeeeCCCCCCCC
Q 024112          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGG---SVTYEGRFEILCLSGSYLLSGNGGSRN  231 (272)
Q Consensus       155 ~phVIrV~~GEDV~~kI~~faqq~~~aicILSa~GsVSnVTLRqp~s~~~---tvt~eG~FEILSLsGt~~~~~~~~~~~  231 (272)
                      +.++++|++||||+++|.+||+++++..|+++++|++++++|++++...+   .+.++|+|||+||+|||...+++    
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~----   85 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC----
Confidence            68999999999999999999999999889999999999999998765443   67899999999999999987752    


Q ss_pred             CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEcc
Q 024112          232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVTFRLCL  270 (272)
Q Consensus       232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVvv~sF~  270 (272)
                      ++.|+|+++++ +|+++||||....+.+  +++++-.|.
T Consensus        86 p~~HlH~~~~~-~g~~~gGHl~~~~v~~--~e~~i~~~~  121 (138)
T d2h6la1          86 PFCHIHVLLGK-DGEVYGGHLFSAEVFA--CEVFVLPLS  121 (138)
T ss_dssp             EEEEEEEEEEE-BTEEEEEEEEEEEEEE--EEEEEEECB
T ss_pred             cEEEEEEEECC-CCCEEEEEeCccEEEE--EEEEEEEec
Confidence            67899999997 7999999999877764  566666654