Citrus Sinensis ID: 024126

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MAAQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGSGSADVFRMASSRWERRQAKVLVCYVHLKSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHcccccHHHHHcccccccccccccccHccccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccEEEcccEEccHHHHHHHcHccEEEEcccccEEEEEEcccHHHHHHHHHHccccEEEEEcHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccc
Coil and Loop (DISEMBL)
MAAQLLTPVCIDVlklqnpslnsfssrsssrllannssslslmghsskrrscgrarvtaedsastdaiADDYYAVlgllpdatpEQIKKAYYNCMkachpdlsgddpettnFCMFINEVYAvlsdpvqrmvydeihgysliatnpflddscpkdhvfvdefscigckncnnvapeVFKIEEDFGRARVYNQCGINEFVQQAIEscpvdcihrTSAQQLSLLEDEMRRVERVNVAMMLSgmgsgsadVFRMASSRWERRQAKVLVCYVHLKSS
Flexible Loop (DISEMBL)
MAAQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNssslslmghsskrrscgrarvtaedsastdaIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMlsgmgsgsaDVFRMASSRWERRQAKVLVCYVHLKSS
Low Complexity Region (SEG)
MAAQLLTPVCIDVLKLQNPslnsfssrsssrllannssslslmghssKRRSCGRARVTAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGSGSADVFRMASSRWERRQAKVLVCYVHLKSS
Disordered region (IsUnstruct)
****LLTPVCIDVLKL**************************************************AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGM***SADVFRMASSRWERRQAKVLVCYVHL***
Disordered Region (DISOPRED)
*********************************************************************DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV*****D****YSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS**************************DV******************YVHL***
Disordered Region (DISEMBL)
MAAQLLTPVCIDVLKLQNPSL************ANNSSSLS*********************ASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGSGSADVFRMASSRWERRQAKVLVCYVHLKSS
Disordered Region (DISPRO)
****LLTPVCIDVLKLQN*******************************RSCGRARVTAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGSGSADVFRMASSRWERRQAKVLVCYVHLK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGSGSADVFRMASSRWERRQAKVLVCYVHLKSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q3AF07	381	Chaperone protein DnaJ OS	yes	no	0.238	0.170	0.492	1e-11
P39101	391	Protein CAJ1 OS=Saccharom	yes	no	0.569	0.396	0.298	1e-11
Q67S53	386	Chaperone protein DnaJ OS	yes	no	0.238	0.168	0.461	3e-10
Q96EY1	480	DnaJ homolog subfamily A	yes	no	0.419	0.237	0.352	3e-10
Q8GYX8	398	Chaperone protein dnaJ 10	no	no	0.283	0.193	0.435	4e-10
Q24331	529	Protein tumorous imaginal	N/A	no	0.238	0.122	0.461	4e-10
Q27237	520	Protein tumorous imaginal	no	no	0.257	0.134	0.428	6e-10
Q56237	280	Chaperone protein DnaJ 2	yes	no	0.242	0.235	0.477	6e-10
B8CXL0	375	Chaperone protein DnaJ OS	yes	no	0.290	0.210	0.4	1e-09
Q82BY4	378	Chaperone protein DnaJ 2	yes	no	0.238	0.171	0.469	1e-09

>sp|Q3AF07|DNAJ_CARHZ Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+  +ATPE+IKKAY    +  HPD++ DDP        INE Y VLSDP +R 
Sbjct: 4   DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRA 63

Query: 131 VYDEI 135
            YD+ 
Sbjct: 64  RYDQF 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)

>sp|P39101|CAJ1_YEAST Protein CAJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAJ1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 19/174 (10%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           +YY +LG+ P+ATP +IKKAY       HPD   DDP+       + E Y VLSDP  R 
Sbjct: 6   EYYDILGIKPEATPTEIKKAYRRKAMETHPDKHPDDPDAQAKFQAVGEAYQVLSDPGLRS 65

Query: 131 VYDEIHGYSLIATNPFLDDSCPKDHVF--------VDEFSCIGCKNCNNVAPEVFKIEED 182
            YD+      +    F D S     +F        + EFS    K  N  A E+F  E++
Sbjct: 66  KYDQFGKEDAVPQQGFEDASEYFTAIFGGDGFKDWIGEFSLF--KELNE-ATEMFGKEDE 122

Query: 183 FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMM 236
            G A            ++A ES     +   + +  SL +D++ + +R  +  M
Sbjct: 123 EGTAATE--------TEKADESTDGGMVKHDTNKAESLKKDKLSKEQREKLMEM 168

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q67S53|DNAJ_SYMTH Chaperone protein DnaJ OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=dnaJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+  +AT  +IKKA+ N  +  HPD + DDP+       INE Y VLSDP +R 
Sbjct: 8   DYYEILGVPRNATEAEIKKAFRNLARKYHPDANKDDPDAAEKFKEINEAYQVLSDPEKRA 67

Query: 131 VYDEI 135
            YD+ 
Sbjct: 68  RYDQF 72

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Symbiobacterium thermophilum (taxid: 2734)

>sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 15  KLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAEDSASTDAIADDYYA 74
           KL  P+  S  +    R L      +SL G       C     TA    S     +DYY 
Sbjct: 42  KLSVPAFASSLTSCGPRALLTLRPGVSLTGTKHNPFIC-----TASFHTSAPLAKEDYYQ 96

Query: 75  VLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYD 133
           +LG+  +A+ ++IKKAYY   K  HPD + DDP+       + E Y VLSD V+R  YD
Sbjct: 97  ILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYD 155

Modulates apoptotic signal transduction or effector structures within the mitochondrial matrix. Affect cytochrome C release from the mitochondria and caspase 3 activation, but not caspase 8 activation. Isoform 1 increases apoptosis triggered by both TNF and the DNA-damaging agent mytomycin C; in sharp contrast, isoform 2 suppresses apoptosis. Can modulate IFN-gamma-mediated transcriptional activity. Isoform 2 may play a role in neuromuscular junction development as an effector of the MUSK signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q8GYX8|DNJ10_ARATH Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           +YY VLG+ P AT  +IKKAYY   +  HPD + +DP+  +    + E Y VLSD  QR 
Sbjct: 6   EYYDVLGVSPTATESEIKKAYYIKARQVHPDKNPNDPQAAHNFQVLGEAYQVLSDSGQRQ 65

Query: 131 VYDEIHGYSLIATNPFLD 148
            YD   G S I+T+  +D
Sbjct: 66  AYDAC-GKSGISTDAIID 82

Have a continuous role in plant development probably in the structural organization of compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q24331|TID_DROVI Protein tumorous imaginal discs, mitochondrial OS=Drosophila virilis GN=l(2)tid PE=2 SV=1

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 39/65 (60%)

Query: 69  ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128
           A DYYA LG+  +A  + IKKAYY   K  HPD + DDP+ +     ++E Y VLSD  +
Sbjct: 78  AKDYYATLGVAKNANAKDIKKAYYELAKKYHPDTNKDDPDASKKFQDVSEAYEVLSDDQK 137

Query: 129 RMVYD 133
           R  YD
Sbjct: 138 RREYD 142

May act as a tumor suppressor in larval imaginal disks.

Drosophila virilis (taxid: 7244)

>sp|Q27237|TID_DROME Protein tumorous imaginal discs, mitochondrial OS=Drosophila melanogaster GN=l(2)tid PE=1 SV=2

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%)

Query: 64  STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVL 123
           + D +A DYYA LG+  +A  + IKKAYY   K  HPD + +DP+       ++E Y VL
Sbjct: 58  TRDLLAKDYYATLGVAKNANGKDIKKAYYQLAKKYHPDTNKEDPDAGRKFQEVSEAYEVL 117

Query: 124 SDPVQRMVYD 133
           SD  +R  YD
Sbjct: 118 SDEQKRREYD 127

May act as a tumor suppressor in larval imaginal disks.

Drosophila melanogaster (taxid: 7227)

>sp|Q56237|DNAJ2_THET8 Chaperone protein DnaJ 2 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ2 PE=3 SV=2

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 67  AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDP 126
           A   DYYA+LG+  +AT E+IK+AY    +  HPD++   PE       INE YAVLSDP
Sbjct: 2   AAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVN-KSPEAEEKFKEINEAYAVLSDP 60

Query: 127 VQRMVYD 133
            +R +YD
Sbjct: 61  EKRRIYD 67

Does not influence ATP binding or hydrolysis nor ADP release. Exerts influence on the interaction of DnaK with substrates; in the presence of DafA, DnaJ inhibits substrate binding, and substrate already bound to DnaK is displaced by DnaJ and DafA.

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

>sp|B8CXL0|DNAJ_HALOH Chaperone protein DnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 67  AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDP 126
           A + DYY +LG+  DA  ++IKKAY    +  HPD++ DDP+       I+E Y +LSDP
Sbjct: 2   ATSKDYYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSDP 61

Query: 127 VQRMVYDEIHGYSLIATNPF 146
            +R  YD+ +G++ I    F
Sbjct: 62  DKRARYDQ-YGHAGINEEDF 80

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

>sp|Q82BY4|DNAJ2_STRAW Chaperone protein DnaJ 2 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=dnaJ2 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 68  IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV 127
           +A DYYAVLG+  DA+ ++IKKA+    +  HPD++  DP+T      IN  Y VLSDP 
Sbjct: 1   MATDYYAVLGVRRDASQDEIKKAFRRLARELHPDVN-PDPKTQERFKEINAAYEVLSDPQ 59

Query: 128 QRMVYD 133
           ++ VYD
Sbjct: 60  KKQVYD 65

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Streptomyces avermitilis (taxid: 33903)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
356542195	339	PREDICTED: uncharacterized protein LOC10	0.955	0.766	0.768	1e-115
363806974	339	uncharacterized protein LOC100809007 [Gl	0.955	0.766	0.760	1e-115
357452867	338	Chaperone protein dnaJ [Medicago truncat	0.955	0.769	0.759	1e-113
388517387	335	unknown [Lotus japonicus]	0.944	0.767	0.778	1e-113
225446674	331	PREDICTED: uncharacterized protein LOC10	0.930	0.764	0.739	1e-111
356543106	332	PREDICTED: uncharacterized protein LOC10	0.937	0.768	0.726	1e-109
18406052	344	DNAJ heat shock N-terminal domain-contai	0.955	0.755	0.723	1e-108
297824243	344	DNAJ heat shock N-terminal domain-contai	0.955	0.755	0.723	1e-108
356517314	332	PREDICTED: uncharacterized protein LOC10	0.933	0.765	0.731	1e-107
224128772	335	predicted protein [Populus trichocarpa]	0.941	0.764	0.764	1e-107

>gi|356542195|ref|XP_003539555.1| PREDICTED: uncharacterized protein LOC100786494 [Glycine max]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/263 (76%), Positives = 223/263 (84%), Gaps = 3/263 (1%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSS-KRRSCGRARVTAED 61
           AQLL+PVC++ LK+ NPSLN   SRSS R+L   +S  + + HS  KRR CGR RVTAED
Sbjct: 2   AQLLSPVCMEALKIHNPSLN-LCSRSSWRMLVKGASPCTFVTHSGWKRRGCGRVRVTAED 60

Query: 62  SAS-TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVY 120
           S S ++ IADDYY VLGLLPDATPEQIKKAYYNCMK+CHPDLSG+DPETTNFC+FINEVY
Sbjct: 61  SVSPSETIADDYYEVLGLLPDATPEQIKKAYYNCMKSCHPDLSGNDPETTNFCIFINEVY 120

Query: 121 AVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIE 180
            VLSDPVQR +YDEIHGYSL + NPFLDDS P+DH FVDEFSCIGCKNC NVAP VF IE
Sbjct: 121 TVLSDPVQRRIYDEIHGYSLTSINPFLDDSSPRDHAFVDEFSCIGCKNCANVAPGVFAIE 180

Query: 181 EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGM 240
           EDFGRAR YNQ G  E VQQAI+SCPV CIH TSA QLSLLEDEMRRVERVNVA+MLSGM
Sbjct: 181 EDFGRARAYNQSGNPELVQQAIDSCPVSCIHWTSAAQLSLLEDEMRRVERVNVALMLSGM 240

Query: 241 GSGSADVFRMASSRWERRQAKVL 263
           G+ S DVFRMASSRWE+RQ+KVL
Sbjct: 241 GTASIDVFRMASSRWEKRQSKVL 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806974|ref|NP_001242058.1| uncharacterized protein LOC100809007 [Glycine max] gi|255635510|gb|ACU18106.1| unknown [Glycine max]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/263 (76%), Positives = 222/263 (84%), Gaps = 3/263 (1%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHS-SKRRSCGRARVTAED 61
           AQLL+PVC++ LK+ NPSLN   SRSS R+L   +S  + + HS SKRR  G+ RVTAED
Sbjct: 2   AQLLSPVCMEALKIHNPSLN-LCSRSSWRMLVKGASPCTFLTHSGSKRRGFGKVRVTAED 60

Query: 62  SAS-TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVY 120
           S S ++ IADDYY V GLLPDATPEQIKKAYYNCMK+CHPDLSG+DPETTNFCMFINEVY
Sbjct: 61  SVSPSETIADDYYEVFGLLPDATPEQIKKAYYNCMKSCHPDLSGNDPETTNFCMFINEVY 120

Query: 121 AVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIE 180
            VLSDPVQRM+YDEIHGYSL + NPFLDDS P+DH FVDEFSCIGCKNC NVAP VF IE
Sbjct: 121 TVLSDPVQRMIYDEIHGYSLTSINPFLDDSSPRDHAFVDEFSCIGCKNCANVAPGVFAIE 180

Query: 181 EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGM 240
           EDFGRAR YNQCG  E VQQAI+SCPV CIH TS  QLSLLEDEMRRVERVNVA+M+SGM
Sbjct: 181 EDFGRARAYNQCGDPELVQQAIDSCPVSCIHWTSPAQLSLLEDEMRRVERVNVALMVSGM 240

Query: 241 GSGSADVFRMASSRWERRQAKVL 263
           G+ S DVFRM SSRWE+RQ+KVL
Sbjct: 241 GTASIDVFRMTSSRWEKRQSKVL 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452867|ref|XP_003596710.1| Chaperone protein dnaJ [Medicago truncatula] gi|217073254|gb|ACJ84986.1| unknown [Medicago truncatula] gi|355485758|gb|AES66961.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/262 (75%), Positives = 220/262 (83%), Gaps = 2/262 (0%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAEDS 62
           AQLL+P   + LK+ NPSLN   S++S R L  ++S  SL   S KRR CGR RV AEDS
Sbjct: 2   AQLLSPFYTEALKINNPSLN-LCSKTSWRKLTKHASPCSLAMESDKRRKCGRLRVEAEDS 60

Query: 63  A-STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA 121
               D  ADDYYAVLGL PDATPEQIKKAYY+CMKACHPDLSG++PETTNFCMFINEVYA
Sbjct: 61  VYPVDTTADDYYAVLGLFPDATPEQIKKAYYDCMKACHPDLSGNNPETTNFCMFINEVYA 120

Query: 122 VLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEE 181
           VLSDP+QR VYDEIHGYSL +TNPF DDSCPKDHVFVDEFSCIGCKNC NVAP+VF +EE
Sbjct: 121 VLSDPIQRNVYDEIHGYSLTSTNPFFDDSCPKDHVFVDEFSCIGCKNCANVAPDVFAMEE 180

Query: 182 DFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMG 241
           DFGRARV++Q G  E VQQAI+SCPVDCIH TSA QLSLLEDEMRR+ERVNVA+MLSGMG
Sbjct: 181 DFGRARVFSQRGNPELVQQAIDSCPVDCIHWTSAAQLSLLEDEMRRIERVNVALMLSGMG 240

Query: 242 SGSADVFRMASSRWERRQAKVL 263
           S S DVFRMA SRWE+RQ+KVL
Sbjct: 241 SASFDVFRMARSRWEKRQSKVL 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517387|gb|AFK46755.1| unknown [Lotus japonicus]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/262 (77%), Positives = 222/262 (84%), Gaps = 5/262 (1%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAEDS 62
           AQLL+PV  +V K+ NPSLN +S RS  R+L   S++ +   HS KR+  GR RV  E+S
Sbjct: 2   AQLLSPVYTEVPKIHNPSLNLYS-RSMWRMLPQTSTTFA--AHSGKRKGFGRVRVATEES 58

Query: 63  AS-TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA 121
            S  +A ADDYYAVLGLLPDATP QIKKAYYNCMKACHPDLSGDDPETTNFC FINEVYA
Sbjct: 59  FSPINAAADDYYAVLGLLPDATPAQIKKAYYNCMKACHPDLSGDDPETTNFCTFINEVYA 118

Query: 122 VLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEE 181
           VLSDPVQRMVYDEIHGYSL + NPFLDDS PKDHVFVDEFSCIGCKNC NVA +VF IEE
Sbjct: 119 VLSDPVQRMVYDEIHGYSLTSINPFLDDS-PKDHVFVDEFSCIGCKNCANVACDVFAIEE 177

Query: 182 DFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMG 241
           DFGRARV NQCG  E +QQAI+SCPVDCIH TSA QLSLLEDEMRRVERVNVA+MLSGMG
Sbjct: 178 DFGRARVQNQCGNPELIQQAIDSCPVDCIHWTSAAQLSLLEDEMRRVERVNVALMLSGMG 237

Query: 242 SGSADVFRMASSRWERRQAKVL 263
           S S+DVFRMASSRWE+RQAKVL
Sbjct: 238 SASSDVFRMASSRWEKRQAKVL 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446674|ref|XP_002281976.1| PREDICTED: uncharacterized protein LOC100260760 [Vitis vinifera] gi|302143456|emb|CBI22017.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/261 (73%), Positives = 218/261 (83%), Gaps = 8/261 (3%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAEDS 62
           AQLL+PVC D LK QNP L++FSSRS        +   + + HSS+RR     RV A   
Sbjct: 2   AQLLSPVCTDSLKFQNP-LHNFSSRSP---YPKPTRGWTNLAHSSRRR----FRVAAAGQ 53

Query: 63  ASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAV 122
           AS++A+A+DYY VLGLLPDATP QIKKAYYNCMKACHPDLSGDDPE TNFCMFINEVYAV
Sbjct: 54  ASSEAVAEDYYTVLGLLPDATPAQIKKAYYNCMKACHPDLSGDDPENTNFCMFINEVYAV 113

Query: 123 LSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEED 182
           LSDPVQR+VYDEIHG++L A NPF DDS P+DH FVDEFSCIGCKNC NVAP+VF IEED
Sbjct: 114 LSDPVQRLVYDEIHGHALTAINPFFDDSSPRDHAFVDEFSCIGCKNCANVAPDVFGIEED 173

Query: 183 FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGS 242
           FGRARVY+QCG  E VQQAI+SCPVDCIH TSA QLSLLEDEMRRVE++NVA+MLSGMGS
Sbjct: 174 FGRARVYSQCGKPELVQQAIDSCPVDCIHWTSAAQLSLLEDEMRRVEKINVALMLSGMGS 233

Query: 243 GSADVFRMASSRWERRQAKVL 263
           G+ DVFRMAS+RWE+RQ+K L
Sbjct: 234 GAVDVFRMASTRWEKRQSKAL 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543106|ref|XP_003540004.1| PREDICTED: uncharacterized protein LOC100812547 [Glycine max]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/263 (72%), Positives = 217/263 (82%), Gaps = 8/263 (3%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAEDS 62
           AQLL+PV  + LK      ++ SS SS R+L   ++  + + H+ KRR CGR RV AE+ 
Sbjct: 2   AQLLSPVYTEPLK------SNLSSISSWRILPKTATLSNFVTHNGKRRGCGRVRVAAEEK 55

Query: 63  A--STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVY 120
           +  ++D +ADDYYAVLGLLPDATP QIKKAYYNCMKACHPDLS +DPE TNFC FINEVY
Sbjct: 56  SFSTSDTVADDYYAVLGLLPDATPAQIKKAYYNCMKACHPDLSDNDPEATNFCTFINEVY 115

Query: 121 AVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIE 180
            VLSDP+QRM+YD+IHGYSL + NPFLDDS PKDHVFVDEFSCIGCKNC NVA +VF IE
Sbjct: 116 GVLSDPIQRMIYDDIHGYSLTSINPFLDDSSPKDHVFVDEFSCIGCKNCANVACDVFGIE 175

Query: 181 EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGM 240
           E+FGRARVY+QCG  E VQQAI+SCPVDCIH TSA QLSLLEDEMRRVERVNVA+MLSGM
Sbjct: 176 EEFGRARVYSQCGKPELVQQAIDSCPVDCIHWTSAAQLSLLEDEMRRVERVNVALMLSGM 235

Query: 241 GSGSADVFRMASSRWERRQAKVL 263
           GS   DVFRMASSRWE+RQAKVL
Sbjct: 236 GSAGTDVFRMASSRWEKRQAKVL 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406052|ref|NP_565982.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|17978968|gb|AAL47445.1| At2g42750/F7D19.25 [Arabidopsis thaliana] gi|20197961|gb|AAD21732.2| expressed protein [Arabidopsis thaliana] gi|20453337|gb|AAM19907.1| At2g42750/F7D19.25 [Arabidopsis thaliana] gi|21553687|gb|AAM62780.1| unknown [Arabidopsis thaliana] gi|330255070|gb|AEC10164.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/268 (72%), Positives = 223/268 (83%), Gaps = 8/268 (2%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANN---SSSLSLMGHSSKRR--SCGRARV 57
           AQ+L+PVC D+LK QN +L+S S  +S R  A     SSS  L  ++ KRR  S GR RV
Sbjct: 2   AQILSPVCTDLLKFQNSALSSRSG-ASPRFSAKTTGASSSWYLPRYAGKRRTDSIGRLRV 60

Query: 58  TAED--SASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF 115
             ED  S ST  +ADDYYAVLGLLPDAT E+IKKAYYNCMK+CHPDLSG+DPETTNFCMF
Sbjct: 61  ATEDASSLSTGDVADDYYAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMF 120

Query: 116 INEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPE 175
           IN++Y +LSDPVQRMVYDEIHGY++ A NPFLDDS P+DHVFVDEF+CIGCKNC NVAP+
Sbjct: 121 INDIYEILSDPVQRMVYDEIHGYTVTAINPFLDDSTPRDHVFVDEFACIGCKNCANVAPD 180

Query: 176 VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAM 235
           +F+IEEDFGRAR  NQ G  + VQQA+E+CPVDCIH+TSA QLSLLEDEMRRVERVNVA+
Sbjct: 181 IFQIEEDFGRARACNQRGNPDLVQQAVETCPVDCIHQTSAAQLSLLEDEMRRVERVNVAL 240

Query: 236 MLSGMGSGSADVFRMASSRWERRQAKVL 263
           MLSGMGSG+ DVFRMA SRWE+RQAKVL
Sbjct: 241 MLSGMGSGAVDVFRMARSRWEKRQAKVL 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824243|ref|XP_002880004.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325843|gb|EFH56263.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/268 (72%), Positives = 222/268 (82%), Gaps = 8/268 (2%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANN---SSSLSLMGHSSKRRS--CGRARV 57
           AQ+L+PVC D+LK QN  L+S S  +S R  A     SSS  L  ++ +RRS   GR RV
Sbjct: 2   AQILSPVCTDLLKFQNSILSSRSG-TSPRFSAKTTGASSSWGLPRYAGRRRSGSIGRLRV 60

Query: 58  TAED--SASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF 115
             ED  S ST  +ADDYYAVLGLLPDAT E+IKKAYYNCMK+CHPDLSG+DPETTNFCMF
Sbjct: 61  ATEDASSLSTGDVADDYYAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMF 120

Query: 116 INEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPE 175
           IN++Y +LSDPVQRMVYDEIHGY++ A NPFLDDS P+DHVFVDEF+CIGCKNC NVAP+
Sbjct: 121 INDIYEILSDPVQRMVYDEIHGYTVTAINPFLDDSTPRDHVFVDEFACIGCKNCANVAPD 180

Query: 176 VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAM 235
           +FKIEEDFGRAR  NQ G  + VQQA+E+CPVDCIH+TSA QLSLLEDEMRRVERVNVA+
Sbjct: 181 IFKIEEDFGRARACNQRGNPDLVQQAVETCPVDCIHQTSAAQLSLLEDEMRRVERVNVAL 240

Query: 236 MLSGMGSGSADVFRMASSRWERRQAKVL 263
           MLSGMGSG+ DVFRMA SRWE+RQAKVL
Sbjct: 241 MLSGMGSGAVDVFRMARSRWEKRQAKVL 268

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517314|ref|XP_003527333.1| PREDICTED: uncharacterized protein LOC100799778 [Glycine max]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 216/264 (81%), Gaps = 10/264 (3%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSFSSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAED- 61
           AQLL+PV  + LK      ++ SS SS R+L   ++  + + H+ KRR CGR RV +E+ 
Sbjct: 2   AQLLSPVYTEPLK------SNLSSISSWRMLPKTATPSNFVTHNGKRRGCGRVRVASEEK 55

Query: 62  --SASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEV 119
             S S  A+ DDYYAVLGLLPDATP QIKKAYYNCMKACHPDLS +DPE TNFC FINEV
Sbjct: 56  SFSTSGTAVVDDYYAVLGLLPDATPGQIKKAYYNCMKACHPDLSDNDPEATNFCTFINEV 115

Query: 120 YAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKI 179
           Y VLSDP+QRM+YDEIHGYSL + NPFLDDS PKDHVFVDEFSCIGCKNC NVA +VF I
Sbjct: 116 YGVLSDPIQRMIYDEIHGYSLTSINPFLDDSSPKDHVFVDEFSCIGCKNCANVACDVFGI 175

Query: 180 EEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSG 239
           EE+FGRARVY+QCG  E VQQAI+SCPVDCIH TSA QLSLLEDEMRRVERVNVA+MLSG
Sbjct: 176 EEEFGRARVYSQCGKPELVQQAIDSCPVDCIHWTSAAQLSLLEDEMRRVERVNVALMLSG 235

Query: 240 MGSGSADVFRMASSRWERRQAKVL 263
           MGS S DVFRMASSRWE+RQAKVL
Sbjct: 236 MGSAS-DVFRMASSRWEKRQAKVL 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128772|ref|XP_002320418.1| predicted protein [Populus trichocarpa] gi|222861191|gb|EEE98733.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/263 (76%), Positives = 222/263 (84%), Gaps = 7/263 (2%)

Query: 3   AQLLTPVCIDVLKLQNPSLNSF--SSRSSSRLLANNSSSLSLMGHSSKRRSCGRARVTAE 60
           AQL++PVC D LK++ PS N F  SSR  + L  NNS S+     +SKRR  GR RV A 
Sbjct: 2   AQLISPVCTDALKIKKPS-NVFHISSRGKTALYHNNSRSVL----NSKRRDFGRIRVAAN 56

Query: 61  DSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVY 120
            SAS DA+ADDYYAVLGLLPDATPEQIKKAYY+CMKACHPDLSG+D +TTNFCMFINEVY
Sbjct: 57  SSASADAVADDYYAVLGLLPDATPEQIKKAYYSCMKACHPDLSGNDTDTTNFCMFINEVY 116

Query: 121 AVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIE 180
           AVLSDP+QRM+YDEIHG++L A NPF DDS PKDH FVDEFSCIGCKNC NVAPEVF IE
Sbjct: 117 AVLSDPLQRMIYDEIHGFALTAMNPFFDDSSPKDHAFVDEFSCIGCKNCANVAPEVFGIE 176

Query: 181 EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGM 240
           EDFGRARVY+QCG  + VQQAIESCPVDCIH TSA QLSLLEDEMRRVER+NVA+MLSGM
Sbjct: 177 EDFGRARVYSQCGNLQLVQQAIESCPVDCIHWTSAAQLSLLEDEMRRVERINVALMLSGM 236

Query: 241 GSGSADVFRMASSRWERRQAKVL 263
           GS  ADVFRMA SRWE+RQAK+L
Sbjct: 237 GSAGADVFRMACSRWEKRQAKIL 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2052426	344	AT2G42750 [Arabidopsis thalian	0.959	0.758	0.689	1.8e-96
TAIR|locus:2166968	465	AT5G23240 [Arabidopsis thalian	0.738	0.432	0.349	1.3e-25
UNIPROTKB|Q55980	133	sll0662 "Ferredoxin (Bacterial	0.275	0.563	0.506	2.9e-16
TAIR|locus:5019474746	244	AT3G05345 "AT3G05345" [Arabido	0.529	0.590	0.296	6.2e-11
TIGR_CMR|CHY_0416	381	CHY_0416 "chaperone protein dn	0.268	0.191	0.459	1.2e-10
TAIR|locus:2030101	398	AT1G76700 [Arabidopsis thalian	0.283	0.193	0.435	2.1e-09
UNIPROTKB|F1NNE0	393	DNAJA3 "Uncharacterized protei	0.297	0.206	0.451	2.8e-09
UNIPROTKB|E9PSW5	429	Dnaja3 "Protein Dnaja3" [Rattu	0.279	0.177	0.434	6e-09
UNIPROTKB|G3V9U3	453	Dnaja3 "Protein Dnaja3" [Rattu	0.279	0.167	0.434	6.6e-09
TAIR|locus:2162692	456	GFA2 "gametophytic factor 2" [	0.316	0.188	0.370	6.7e-09

TAIR|locus:2052426 AT2G42750 [Arabidopsis thaliana (taxid:3702)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 184/267 (68%), Positives = 208/267 (77%)

Query:     3 AQLLTPVCIDVLKLQNPXXXXXXXXXXXXXXXXXXXXXXXXX--XXXKRR--SCGRARVT 58
             AQ+L+PVC D+LK QN                               KRR  S GR RV 
Sbjct:     2 AQILSPVCTDLLKFQNSALSSRSGASPRFSAKTTGASSSWYLPRYAGKRRTDSIGRLRVA 61

Query:    59 AED--SASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFI 116
              ED  S ST  +ADDYYAVLGLLPDAT E+IKKAYYNCMK+CHPDLSG+DPETTNFCMFI
Sbjct:    62 TEDASSLSTGDVADDYYAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMFI 121

Query:   117 NEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEV 176
             N++Y +LSDPVQRMVYDEIHGY++ A NPFLDDS P+DHVFVDEF+CIGCKNC NVAP++
Sbjct:   122 NDIYEILSDPVQRMVYDEIHGYTVTAINPFLDDSTPRDHVFVDEFACIGCKNCANVAPDI 181

Query:   177 FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMM 236
             F+IEEDFGRAR  NQ G  + VQQA+E+CPVDCIH+TSA QLSLLEDEMRRVERVNVA+M
Sbjct:   182 FQIEEDFGRARACNQRGNPDLVQQAVETCPVDCIHQTSAAQLSLLEDEMRRVERVNVALM 241

Query:   237 LSGMGSGSADVFRMASSRWERRQAKVL 263
             LSGMGSG+ DVFRMA SRWE+RQAKVL
Sbjct:   242 LSGMGSGAVDVFRMARSRWEKRQAKVL 268

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

TAIR|locus:2166968 AT5G23240 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 78/223 (34%), Positives = 113/223 (50%)

Query:    54 RARVTAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFC 113
             + R T+  S+ TD    D Y +LG+   +   QIK AY    K CHPD++GD     +  
Sbjct:    36 KCRATSSSSSITDF---DLYDLLGIDRSSDKSQIKSAYRALQKRCHPDIAGDPGH--DMA 90

Query:   114 MFINEVYAVLSDPVQRMVYD-------EIHGYSLIATNPFLDDSC-PKDH---VFVDEFS 162
             + +NE Y +LSDP+ R  YD       E+ GY+     P     C P+      FVDE  
Sbjct:    91 IILNEAYQLLSDPISRQAYDKEQAKLEELRGYT---GKPIYSVWCGPETEQRAAFVDEVK 147

Query:   163 CIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEF-VQQAIESCPVDCIHRTSAQQLSLL 221
             C+GC  C   A + F IE  +GRARV  Q    E  +++AIE+CPVDCI       L+ L
Sbjct:   148 CVGCLKCALCAEKTFAIETAYGRARVVAQWADPESKIKEAIEACPVDCISMVERSDLAPL 207

Query:   222 EDEMRRVERVNVAMMLSG-MGSGSADVFRMASSRWERRQAKVL 263
             E  M +  R NV + +   +G   ++VF +   +++ R AK +
Sbjct:   208 EFLMSKQPRGNVRIGVGNTVGERVSNVF-VDVKKFQERYAKAM 249

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q55980 sll0662 "Ferredoxin (Bacterial type ferredoxin family)" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 39/77 (50%), Positives = 56/77 (72%)

Query:   156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFV-QQAIESCPVDCIHRTS 214
             V+VDE +CIGCKNC +VAP  F IE++ GR+R ++Q G +E V Q+AI++CPVDCIH   
Sbjct:    46 VYVDEVTCIGCKNCAHVAPNTFTIEQEHGRSRAFSQNGDDEAVIQEAIDTCPVDCIHWVP 105

Query:   215 AQQLSLLEDEMRRVERV 231
               +L  LE E R+ +++
Sbjct:   106 YDELKHLE-EKRKHQQI 121

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:5019474746 AT3G05345 "AT3G05345" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 6.2e-11, P = 6.2e-11
 Identities = 46/155 (29%), Positives = 75/155 (48%)

Query:    73 YAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132
             Y++LG+ P  +  ++K A+   +K  HPD++ D   +      I + Y +L++  +  + 
Sbjct:    46 YSILGVEPSCSSSELKAAFRAKVKQYHPDVNKDGSNSDIMIRRIIQAYEMLTNYSRSEI- 104

Query:   133 DEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIG--CKN-CNNVAPEVFKIEEDFGRARVY 189
               I G  L   +PF    C    VFV+E  C+G  C   C   A  VF  +   G AR  
Sbjct:   105 --IEGECL---DPFDHPECEALDVFVNEVLCVGKRCSYPCFETASHVFSCDSS-GTARAM 158

Query:   190 NQCGINEF-VQQAIESCPVDCIHRTSAQQLSLLED 223
             +Q    ++ VQ A+  CP +CIH  +  Q  +LE+
Sbjct:   159 SQGHGEDYRVQSAVNQCPRNCIHYVTPSQRIILEE 193

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 167 (63.8 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 34/74 (45%), Positives = 46/74 (62%)

Query:    71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
             DYY +LG+  +ATPE+IKKAY    +  HPD++ DDP        INE Y VLSDP +R 
Sbjct:     4 DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRA 63

Query:   131 VYDEIHGYSLIATN 144
              YD+  G++ +  N
Sbjct:    64 RYDQF-GHAGVDGN 76

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

TAIR|locus:2030101 AT1G76700 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 34/78 (43%), Positives = 46/78 (58%)

Query:    71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
             +YY VLG+ P AT  +IKKAYY   +  HPD + +DP+  +    + E Y VLSD  QR 
Sbjct:     6 EYYDVLGVSPTATESEIKKAYYIKARQVHPDKNPNDPQAAHNFQVLGEAYQVLSDSGQRQ 65

Query:   131 VYDEIHGYSLIATNPFLD 148
              YD   G S I+T+  +D
Sbjct:    66 AYDAC-GKSGISTDAIID 82

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|F1NNE0 DNAJA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 37/82 (45%), Positives = 47/82 (57%)

Query:    53 GRARVTAEDSASTDAIA-DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTN 111
             G  RV A    S+ A A +DYY VLG+   A+ ++IKKAYY   K  HPD + DDP+   
Sbjct:    12 GTKRVPAASFHSSAARAKEDYYEVLGVPRSASQKEIKKAYYQLAKKYHPDTNKDDPKAKE 71

Query:   112 FCMFINEVYAVLSDPVQRMVYD 133
                 + E Y VLSD V+R  YD
Sbjct:    72 KFAQLAEAYEVLSDEVKRKQYD 93

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005133 "interferon-gamma receptor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IEA

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=IEA

UNIPROTKB|E9PSW5 Dnaja3 "Protein Dnaja3" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 33/76 (43%), Positives = 42/76 (55%)

Query:    58 TAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFIN 117
             TA    S     DDYY +LG+  +A+ + IKKAYY   K  HPD + DDP+       + 
Sbjct:    80 TASFHTSASLAKDDYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLA 139

Query:   118 EVYAVLSDPVQRMVYD 133
             E Y VLSD V+R  YD
Sbjct:   140 EAYEVLSDEVKRKQYD 155

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|G3V9U3 Dnaja3 "Protein Dnaja3" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 33/76 (43%), Positives = 42/76 (55%)

Query:    58 TAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFIN 117
             TA    S     DDYY +LG+  +A+ + IKKAYY   K  HPD + DDP+       + 
Sbjct:    80 TASFHTSASLAKDDYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLA 139

Query:   118 EVYAVLSDPVQRMVYD 133
             E Y VLSD V+R  YD
Sbjct:   140 EAYEVLSDEVKRKQYD 155

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2162692 GFA2 "gametophytic factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 6.7e-09, P = 6.7e-09
 Identities = 33/89 (37%), Positives = 48/89 (53%)

Query:    69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128
             A DYY+VLG+  +A   +IKKAYY   K  HPD++ DDPE       +++ Y +L D  +
Sbjct:    92 AKDYYSVLGVSKNAQEGEIKKAYYGLAKKLHPDMNKDDPEAETKFQEVSKAYEILKDKEK 151

Query:   129 RMVYDEIHGYSLIATNPFLDDSCPKDHVF 157
             R +YD++ G+     N       P D  F
Sbjct:   152 RDLYDQV-GHEAFEQNA--SGGFPNDQGF 177

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0000740 "nuclear membrane fusion" evidence=IMP

GO:0010198 "synergid death" evidence=IMP

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IGI

GO:0000741 "karyogamy" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009558 "embryo sac cellularization" evidence=IMP

GO:0010197 "polar nucleus fusion" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
pfam00226	63	pfam00226, DnaJ, DnaJ domain	9e-23
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	4e-19
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-16
pfam13459	60	pfam13459, Fer4_15, 4Fe-4S single cluster domain	2e-15
pfam13370	58	pfam13370, Fer4_13, 4Fe-4S single cluster domain	5e-14
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	3e-13
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-13
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	4e-13
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-12
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	2e-12
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	5e-12
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	7e-12
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	8e-12
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	8e-11
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-10
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-10
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-10
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-10
COG1141	68	COG1141, Fer, Ferredoxin [Energy production and co	5e-10
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	9e-10
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	9e-10
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-09
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-09
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	3e-09
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-09
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	6e-09
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	6e-09
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-08
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	3e-08
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-07
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-07
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	4e-07
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	4e-07
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-06
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-06
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	6e-06
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-05
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-05
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	1e-05
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-05
pfam13187	44	pfam13187, Fer4_9, 4Fe-4S dicluster domain	4e-04

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 88.0 bits (219), Expect = 9e-23
 Identities = 30/63 (47%), Positives = 37/63 (58%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+  DA+ E+IKKAY       HPD +  DP        INE Y VLSDP +R 
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 131 VYD 133
           +YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 78.4 bits (194), Expect = 4e-19
 Identities = 29/55 (52%), Positives = 34/55 (61%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125
           DYY +LG+ PDA+ E+IKKAY       HPD + DDPE       INE Y VLSD
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 70.3 bits (173), Expect = 4e-16
 Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE--TTNFCMFINEVYAVLSDPVQ 128
           DYY +LG+  DA+ ++IKKAY       HPD +  D E     F   INE Y VLSDP +
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKF-KEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|222145 pfam13459, Fer4_15, 4Fe-4S single cluster domain

 Score = 68.5 bits (168), Expect = 2e-15
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 157 FVDEFSCIGCKNCNNVAPEVFKIEEDFG-RARVYNQCGINEF---VQQAIESCPVDCIH 211
           FVD  +CIGC  C  +AP+VF+++ED   R  +      ++     Q+A ++CPVD IH
Sbjct: 1   FVDRDTCIGCGLCVALAPDVFELDEDGKARVILDEGEVPDDLEEDAQEAADACPVDAIH 59

Length = 60

>gnl|CDD|222081 pfam13370, Fer4_13, 4Fe-4S single cluster domain

 Score = 65.0 bits (159), Expect = 5e-14
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEF---VQQAIESCPVDCIH 211
           VD  +CIGC  C  +AP+VF  ++D G + V +Q    E      +A++SCPV  I 
Sbjct: 1   VDRDTCIGCGLCREIAPDVFAYDDDGGASVVLDQPVPEEEEAAALEALDSCPVAAIG 57

Length = 58

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 32/68 (47%), Positives = 40/68 (58%)

Query: 67  AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDP 126
           A   DYY +LG+  +AT E+IKKAY    K  HPDL+  D E       INE Y +LSDP
Sbjct: 2   AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDP 61

Query: 127 VQRMVYDE 134
            +R  YD+
Sbjct: 62  QKRAQYDQ 69

Length = 386

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
           DYY +LG+  DA+ E+IKKAY    K  HPD +  D E      F  INE Y VLSDP +
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEE--KFKEINEAYEVLSDPEK 62

Query: 129 RMVYD 133
           R  YD
Sbjct: 63  RAAYD 67

Length = 371

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 66.8 bits (162), Expect = 4e-13
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTN--FCMFINEVYAVLSDPVQ 128
           DYY +LG+ P+A+ E+IKKAY       HPD +  DP+     F   INE Y +LSDP +
Sbjct: 7   DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKE-INEAYEILSDPER 65

Query: 129 RMVYDEIHGYS 139
           R  YD+I   +
Sbjct: 66  RAEYDKIGADN 76

Length = 237

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYYA+LG+  +A+ ++IKKA+    +  HPD++   P        INE Y VLSDP +R 
Sbjct: 5   DYYAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVLSDPEKRR 63

Query: 131 VYD 133
           +YD
Sbjct: 64  IYD 66

Length = 291

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+  +AT E+IKKAY    +  HPD +  +PE       INE Y VLSDP +R 
Sbjct: 4   DYYEILGVSRNATQEEIKKAYRRLARKYHPDFN-KNPEAEEKFKEINEAYQVLSDPEKRK 62

Query: 131 VYDE 134
           +YD+
Sbjct: 63  LYDQ 66

Length = 382

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 64.9 bits (158), Expect = 5e-12
 Identities = 31/72 (43%), Positives = 40/72 (55%)

Query: 63  ASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAV 122
           ++ D I  DYY VLG+  DAT  +IKKAY    +  HPD +  D +       I+E Y V
Sbjct: 2   STKDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDV 61

Query: 123 LSDPVQRMVYDE 134
           LSD  +R  YDE
Sbjct: 62  LSDEKKRKEYDE 73

Length = 389

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+  DA+ E+IKKAY    K  HPD +  D E       INE Y VLSDP +R 
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN-KDKEAEEKFKEINEAYEVLSDPEKRA 59

Query: 131 VYDE 134
            YD+
Sbjct: 60  QYDQ 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 64.4 bits (157), Expect = 8e-12
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           D+Y  LG+  DA+ E+IKKAY    +  HPD +  DP        ++E + VLSDP +R 
Sbjct: 10  DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 131 VYDE 134
            YDE
Sbjct: 70  EYDE 73

Length = 392

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 61.1 bits (148), Expect = 8e-11
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 68  IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLS-GDDPETTNFCMFINEVYAVLSDP 126
           +A DYY +LG+  +A+ E IKKA+    K  HPDL  G+  E       I+E Y VLSDP
Sbjct: 1   MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60

Query: 127 VQRMVYDE 134
            +R  YD+
Sbjct: 61  QKRRQYDQ 68

Length = 365

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLS-GDDPETTNFCMFINEVYAVLSDPVQR 129
           DYY +LG+  +AT E+IK+AY   +K  HPD    +  E       I E Y VLSDP +R
Sbjct: 5   DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64

Query: 130 MVYDEIHGY 138
            +YD   GY
Sbjct: 65  AMYDRF-GY 72

Length = 369

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 27/63 (42%), Positives = 35/63 (55%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+   A+PE+IKKAY       HPD +  D E       ++E Y VLSD  +R 
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 131 VYD 133
            YD
Sbjct: 62  SYD 64

Length = 391

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 68  IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV 127
           +A DYY +LG+  +A+  +IK+AY    +  HPD++ D+     F   I+  Y VLSDP 
Sbjct: 1   MARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKF-KEISVAYEVLSDPE 59

Query: 128 QRMVYD 133
           +R + D
Sbjct: 60  KRRIVD 65

Length = 378

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNC-MKACHPDLSGDDPETTNFCMF--INEVYAVLSDPV 127
           DYY VLG+  +A+ ++IKKAY    MK  HPD +  D E      F  I E Y VLSDP 
Sbjct: 5   DYYEVLGVSRNASEDEIKKAYRKLAMKY-HPDRNPGDKEAEE--KFKEIKEAYEVLSDPQ 61

Query: 128 QRMVYD 133
           +R  YD
Sbjct: 62  KRAAYD 67

Length = 371

>gnl|CDD|224064 COG1141, Fer, Ferredoxin [Energy production and conversion]

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--------CGINEFVQQAIESCPV 207
           V VD  +CIGC  C  VAP+VF  +++ G A V +           + E  + A E+CP 
Sbjct: 3   VIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPT 61

Query: 208 DCIH 211
           D I 
Sbjct: 62  DAIK 65

Length = 68

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY VLG+   A+ ++IKKAY    K  HPD++ ++     F   I+E Y VLSD  +R 
Sbjct: 5   DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKF-KEISEAYEVLSDDQKRA 63

Query: 131 VYDE 134
            YD+
Sbjct: 64  QYDQ 67

Length = 376

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 58.7 bits (141), Expect = 9e-10
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY VLG+  DA  ++IKKA+    K  HPD     P+  +    INE   VLS+P +R 
Sbjct: 3   DYYEVLGIDRDADEQEIKKAFRKLAKKYHPD-RNKAPDAASIFAEINEANDVLSNPKKRA 61

Query: 131 VYDE 134
            YD+
Sbjct: 62  NYDK 65

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LGL  DA+ E IKKAY       HPD +  +P+       I+E YAVLSD  +R 
Sbjct: 6   DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLSDAEKRA 64

Query: 131 VYD 133
            YD
Sbjct: 65  QYD 67

Length = 377

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+  DA+ E+IKK+Y       HPD +  D E         E Y VLSDP +R 
Sbjct: 5   DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG 64

Query: 131 VYDE 134
           +YD+
Sbjct: 65  IYDQ 68

Length = 366

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           +YY  LG+  DA+ ++IKKAY    K  HPD++  +P        + E Y  LSDP +R 
Sbjct: 5   EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETLSDPQKRA 63

Query: 131 VYDE 134
            YD+
Sbjct: 64  AYDQ 67

Length = 380

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY VLGL   A+ ++IKKA+       HPD +  + E       INE Y VLSDP ++ 
Sbjct: 5   DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64

Query: 131 VYDE 134
            YD+
Sbjct: 65  QYDQ 68

Length = 380

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 27/63 (42%), Positives = 34/63 (53%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY VLG+  DA+ ++IKKAY       HPD + D+PE         E Y VL D  +R 
Sbjct: 5   DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64

Query: 131 VYD 133
            YD
Sbjct: 65  RYD 67

Length = 373

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY VLG+  +A  ++IKKAY    +  HPD+S ++         I+E YAVLSD  +R 
Sbjct: 6   DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEKRQ 64

Query: 131 VYDE 134
            YD+
Sbjct: 65  RYDQ 68

Length = 378

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 30/65 (46%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 72  YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQR 129
            Y VL L  D T  +IKKAY       HPD  G DPE      F  I+  Y VLSDP +R
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPD-KGGDPE-----KFKEISRAYEVLSDPEKR 83

Query: 130 MVYDE 134
            +YDE
Sbjct: 84  KIYDE 88

Length = 421

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY VLG+   A  ++IKKAY       HPD + D+ E       +NE Y VLS+  +R 
Sbjct: 4   DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63

Query: 131 VYDE 134
            YD+
Sbjct: 64  RYDQ 67

Length = 397

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+   A+ ++IK AY       HPD + +      F   INE YAVLSD  +R 
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQ-INEAYAVLSDAEKRA 61

Query: 131 VYD 133
            YD
Sbjct: 62  HYD 64

Length = 371

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 28/64 (43%), Positives = 34/64 (53%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY VLG+   AT ++IKKAY       HPD +  D E         E Y VLSDP +R 
Sbjct: 6   DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65

Query: 131 VYDE 134
            YD+
Sbjct: 66  RYDQ 69

Length = 386

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYYA++G+ P    + IK AY    +  HPD+S +      F   + E + VLSD  +R 
Sbjct: 5   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARF-KEVAEAWEVLSDEQRRA 63

Query: 131 VYDEI 135
            YD++
Sbjct: 64  EYDQL 68

Length = 306

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 68  IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV 127
           +A DYY +LG+  DA  +++K+AY    +  HPD++ +      F   IN  Y VLSDP 
Sbjct: 1   MAADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRF-KEINRAYEVLSDPE 59

Query: 128 QRMVYD 133
            R  YD
Sbjct: 60  TRARYD 65

Length = 374

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY VLG+  +A+ +++KKAY    +  HPD++   P+  +    + E Y  LSDP ++ 
Sbjct: 5   DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVN-KAPDAEDKFKEVKEAYDTLSDPQKKA 63

Query: 131 VYDE 134
            YD+
Sbjct: 64  HYDQ 67

Length = 371

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 24/63 (38%), Positives = 32/63 (50%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LGL   A+ ++IKKAY       HPD +  + E  +      E Y VL D  +R 
Sbjct: 4   DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 131 VYD 133
            YD
Sbjct: 64  QYD 66

Length = 365

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 72  YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131
           YY +LG+   A  E+IK AY       HPD +  + E+        E Y +L DP +R  
Sbjct: 6   YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65

Query: 132 YDE 134
           YD+
Sbjct: 66  YDQ 68

Length = 372

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY VLG+   A+ ++I++AY    K  HPDL+   P+  +  + INE   VL D  +R 
Sbjct: 5   DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPDAHDKMVEINEAADVLLDKDKRK 63

Query: 131 VYDE 134
            YD+
Sbjct: 64  QYDQ 67

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 31/62 (50%)

Query: 72  YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131
           YY +L +   +  E IKK+Y       HPD +  D E       INE Y VLSD  +R +
Sbjct: 5   YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64

Query: 132 YD 133
           YD
Sbjct: 65  YD 66

Length = 369

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 68  IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV 127
           ++ DYY +LG+   A+   +KKAY    K  HPD +        F   IN  Y VL D  
Sbjct: 1   MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKF-KEINAAYDVLKDEQ 59

Query: 128 QRMVYD 133
           +R  YD
Sbjct: 60  KRAAYD 65

Length = 372

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 71  DYYAVLGLLP---DATPEQIKKAYYNCMKACHPDL--SGDDPETTNFCMFINEVYAVLSD 125
           D YA+LGL      A P QI KA+   +   HPD   +G +     F   I +   VL D
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103

Query: 126 PVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDE 160
              R+ YD              D   P   ++  +
Sbjct: 104 RKLRLQYDSN----------DFDADVPPPRIYTPD 128

Length = 379

>gnl|CDD|221966 pfam13187, Fer4_9, 4Fe-4S dicluster domain

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 163 CIGCKNCNNVAPEVFKIEEDFGRARVY-NQCGINEFVQQAIESCPVDCI 210
           CIGC  C  V P    + ++ G+  V    CG        +E CPV  I
Sbjct: 2   CIGCGACVKVCPAGVIMRDNGGKVVVKCIGCG------ACVEVCPVGAI 44

Length = 44

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.9
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.89
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.88
PRK14288	369	chaperone protein DnaJ; Provisional	99.81
PRK14296	372	chaperone protein DnaJ; Provisional	99.8
PRK14279	392	chaperone protein DnaJ; Provisional	99.8
PRK14286	372	chaperone protein DnaJ; Provisional	99.78
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK14282	369	chaperone protein DnaJ; Provisional	99.77
PRK14285	365	chaperone protein DnaJ; Provisional	99.76
PRK14297	380	chaperone protein DnaJ; Provisional	99.76
PRK14287	371	chaperone protein DnaJ; Provisional	99.76
PRK14294	366	chaperone protein DnaJ; Provisional	99.76
PRK14277	386	chaperone protein DnaJ; Provisional	99.76
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.75
PRK14301	373	chaperone protein DnaJ; Provisional	99.75
PRK14299	291	chaperone protein DnaJ; Provisional	99.75
PRK14276	380	chaperone protein DnaJ; Provisional	99.75
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.75
PRK14298	377	chaperone protein DnaJ; Provisional	99.74
PRK14283	378	chaperone protein DnaJ; Provisional	99.74
PRK14295	389	chaperone protein DnaJ; Provisional	99.74
PRK14284	391	chaperone protein DnaJ; Provisional	99.74
PRK14278	378	chaperone protein DnaJ; Provisional	99.74
PRK10767	371	chaperone protein DnaJ; Provisional	99.74
PRK14291	382	chaperone protein DnaJ; Provisional	99.74
PRK14280	376	chaperone protein DnaJ; Provisional	99.73
PRK14281	397	chaperone protein DnaJ; Provisional	99.73
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.73
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.71
PRK14289	386	chaperone protein DnaJ; Provisional	99.71
PRK14290	365	chaperone protein DnaJ; Provisional	99.71
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.69
PRK14300	372	chaperone protein DnaJ; Provisional	99.69
PRK14292	371	chaperone protein DnaJ; Provisional	99.69
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.69
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.68
PRK14293	374	chaperone protein DnaJ; Provisional	99.67
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.67
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.67
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.66
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.65
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PHA03102	153	Small T antigen; Reviewed	99.62
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.61
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.56
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.56
PRK05014	171	hscB co-chaperone HscB; Provisional	99.5
PRK01356	166	hscB co-chaperone HscB; Provisional	99.48
PRK03578	176	hscB co-chaperone HscB; Provisional	99.47
PRK00294	173	hscB co-chaperone HscB; Provisional	99.47
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.44
PTZ00100	116	DnaJ chaperone protein; Provisional	99.42
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.36
COG1141	68	Fer Ferredoxin [Energy production and conversion]	99.35
PF13370	58	Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A	99.32
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.31
PF13459	65	Fer4_15: 4Fe-4S single cluster domain	99.3
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.28
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.25
PHA02624	647	large T antigen; Provisional	99.23
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.22
PRK01773	173	hscB co-chaperone HscB; Provisional	99.18
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.17
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.1
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.98
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.89
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.57
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.45
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.37
PF06902	64	Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro:	98.03
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.51
PF14697	59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	97.27
COG1146	68	Ferredoxin [Energy production and conversion]	97.23
COG1143	172	NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino	97.18
PF13187	55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	97.12
COG1142	165	HycB Fe-S-cluster-containing hydrogenase component	97.05
PRK08348	120	NADH-plastoquinone oxidoreductase subunit; Provisi	97.03
PRK09626	103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	96.96
CHL00065	81	psaC photosystem I subunit VII	96.82
TIGR02060	132	aprB adenosine phosphosulphate reductase, beta sub	96.78
COG0437	203	HybA Fe-S-cluster-containing hydrogenase component	96.64
PLN00071	81	photosystem I subunit VII; Provisional	96.62
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.58
PF13247	98	Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX	96.58
TIGR02936	91	fdxN_nitrog ferredoxin III, nif-specific. Members	96.57
PRK09623	105	vorD 2-ketoisovalerate ferredoxin oxidoreductase s	96.54
COG1144	91	Pyruvate:ferredoxin oxidoreductase and related 2-o	96.42
TIGR03048	80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	96.4
PRK13984	604	putative oxidoreductase; Provisional	96.39
PRK07569	234	bidirectional hydrogenase complex protein HoxU; Va	96.38
PRK02651	81	photosystem I subunit VII; Provisional	96.29
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.29
PRK08222	181	hydrogenase 4 subunit H; Validated	96.25
TIGR00403	183	ndhI NADH-plastoquinone oxidoreductase subunit I p	96.24
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.24
PRK06991	270	ferredoxin; Provisional	96.17
COG3592	74	Uncharacterized conserved protein [Function unknow	96.16
TIGR01582	283	FDH-beta formate dehydrogenase, beta subunit, Fe-S	96.14
TIGR02494	295	PFLE_PFLC glycyl-radical enzyme activating protein	96.11
PRK12387	180	formate hydrogenlyase complex iron-sulfur subunit;	96.05
PRK14028	312	pyruvate ferredoxin oxidoreductase subunit gamma/d	95.94
PRK00783	263	DNA-directed RNA polymerase subunit D; Provisional	95.94
PRK09625	133	porD pyruvate flavodoxin oxidoreductase subunit de	95.91
PRK09898	208	hypothetical protein; Provisional	95.88
PRK09624	105	porD pyuvate ferredoxin oxidoreductase subunit del	95.85
KOG3256	212	consensus NADH:ubiquinone oxidoreductase, NDUFS8/2	95.82
PRK05113	191	electron transport complex protein RnfB; Provision	95.81
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	95.78
KOG0431	453	consensus Auxilin-like protein and related protein	95.77
TIGR02163	255	napH_ ferredoxin-type protein, NapH/MauN family. M	95.74
TIGR01971	122	NuoI NADH-quinone oxidoreductase, chain I. This mo	95.72
TIGR00402	101	napF ferredoxin-type protein NapF. The gene codes	95.71
PRK05888	164	NADH dehydrogenase subunit I; Provisional	95.68
PRK09477	271	napH quinol dehydrogenase membrane component; Prov	95.58
TIGR02179	78	PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta	95.55
CHL00014	167	ndhI NADH dehydrogenase subunit I	95.45
TIGR01944	165	rnfB electron transport complex, RnfABCDGE type, B	95.28
PF12797	22	Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450	95.15
TIGR03149	225	cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S	95.08
PRK14993	244	tetrathionate reductase subunit B; Provisional	95.07
COG1145	99	NapF Ferredoxin [Energy production and conversion]	94.85
PRK10882	328	hydrogenase 2 protein HybA; Provisional	94.7
TIGR02951	161	DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi	94.69
PRK10330	181	formate dehydrogenase-H ferredoxin subunit; Provis	94.6
TIGR02512	374	Fe_only_hydrog hydrogenases, Fe-only. This model d	94.57
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	94.52
PRK08493	819	NADH dehydrogenase subunit G; Validated	94.5
PF13237	52	Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.	94.48
PF12837	24	Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450	94.4
COG3383	978	Uncharacterized anaerobic dehydrogenase [General f	94.4
TIGR02700	234	flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T	94.39
PTZ00305	297	NADH:ubiquinone oxidoreductase; Provisional	94.05
PRK08764	135	ferredoxin; Provisional	93.98
cd07030	259	RNAP_D D subunit of Archaeal RNA polymerase. The D	93.81
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.72
PRK06273	165	ferredoxin; Provisional	93.72
PRK10194	163	ferredoxin-type protein; Provisional	93.65
PRK09129	776	NADH dehydrogenase subunit G; Validated	93.64
TIGR03149	225	cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S	93.59
PRK08166	847	NADH dehydrogenase subunit G; Validated	93.54
TIGR02745	434	ccoG_rdxA_fixG cytochrome c oxidase accessory prot	93.34
TIGR01973	603	NuoG NADH-quinone oxidoreductase, chain G. This mo	93.23
PRK07860	797	NADH dehydrogenase subunit G; Validated	92.83
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.52
PF12838	52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	92.13
TIGR01660	492	narH nitrate reductase, beta subunit. The Nitrate	91.97
TIGR03478	321	DMSO_red_II_bet DMSO reductase family type II enzy	91.95
PRK07118	280	ferredoxin; Validated	91.91
PRK07118	280	ferredoxin; Validated	91.67
TIGR02912	314	sulfite_red_C sulfite reductase, subunit C. Member	91.47
PF00037	24	Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T	91.3
PRK09476	254	napG quinol dehydrogenase periplasmic component; P	91.27
COG2878	198	Predicted NADH:ubiquinone oxidoreductase, subunit	91.27
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	90.86
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	90.51
PRK13795	636	hypothetical protein; Provisional	90.27
TIGR03287	391	methan_mark_16 putative methanogenesis marker 16 m	89.86
TIGR01660	492	narH nitrate reductase, beta subunit. The Nitrate	89.83
PRK09130	687	NADH dehydrogenase subunit G; Validated	89.52
PRK10194	163	ferredoxin-type protein; Provisional	88.94
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	88.74
COG1034	693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	88.28
TIGR03294	228	FrhG coenzyme F420 hydrogenase, subunit gamma. Thi	88.2
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	88.2
TIGR00397	213	mauM_napG MauM/NapG family ferredoxin-type protein	86.99
PF12800	17	Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450	86.96
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	85.4
PF13446	62	RPT: A repeated domain in UCH-protein	84.87
PF14697	59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	84.25
PRK10330	181	formate dehydrogenase-H ferredoxin subunit; Provis	84.2
TIGR03478	321	DMSO_red_II_bet DMSO reductase family type II enzy	83.88
PRK15449	95	ferredoxin-like protein FixX; Provisional	83.12
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	82.85
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	82.54
PRK13029	1186	2-oxoacid ferredoxin oxidoreductase; Provisional	82.17
COG1149	284	MinD superfamily P-loop ATPase containing an inser	81.66
KOG0724	335	consensus Zuotin and related molecular chaperones	80.51
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	80.23

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.8e-24  Score=199.74  Aligned_cols=70  Identities=44%  Similarity=0.657  Sum_probs=67.0

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      +..+|||+||||+++||.+|||+|||+|+++||||+|+.+++++++|++|++||+|||||++|+.||++|
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG   70 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFG   70 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccC
Confidence            3578999999999999999999999999999999999987999999999999999999999999999875

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.7e-24  Score=188.61  Aligned_cols=94  Identities=45%  Similarity=0.591  Sum_probs=83.3

Q ss_pred             CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccccccccCCC
Q 024126           66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNP  145 (272)
Q Consensus        66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~~~~~~~~  145 (272)
                      .....|+|+||||+++|+.++||++||+|+++||||+++++|++.++|++||+||+||+||.+|..||++|+++....+.
T Consensus        27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~  106 (279)
T KOG0716|consen   27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQ  106 (279)
T ss_pred             ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHh
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999988877777


Q ss_pred             CCCCCCCCCccccC
Q 024126          146 FLDDSCPKDHVFVD  159 (272)
Q Consensus       146 ~~~~~~~~~~v~vD  159 (272)
                      |.+...+...++.+
T Consensus       107 fg~d~~~~~~v~~~  120 (279)
T KOG0716|consen  107 FGEDSKIIYFVFSS  120 (279)
T ss_pred             hcccCcceEEEecc
Confidence            76665554444443

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.6e-23  Score=187.83  Aligned_cols=71  Identities=38%  Similarity=0.584  Sum_probs=68.4

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ...+|||+||||+.+|+..|||+|||||+++||||+|+++|.+++.|++|+.||+|||||++|+.||.+|.
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE   83 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE   83 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999874

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=1.5e-20  Score=176.47  Aligned_cols=69  Identities=35%  Similarity=0.520  Sum_probs=65.3

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.+++++++|++|++||+||+||.+|+.||++|.
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~   70 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK   70 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence            469999999999999999999999999999999998767889999999999999999999999999864

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=5e-20  Score=173.03  Aligned_cols=68  Identities=37%  Similarity=0.579  Sum_probs=64.1

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ ++++++|++|++||+||+||++|+.||++|.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~   70 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGH   70 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence            4699999999999999999999999999999999975 6789999999999999999999999999763

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=6.6e-20  Score=173.30  Aligned_cols=69  Identities=39%  Similarity=0.634  Sum_probs=65.6

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ..+|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||++|+.||++|
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G   75 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR   75 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence            357999999999999999999999999999999999877888999999999999999999999999985

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=1.2e-19  Score=170.42  Aligned_cols=69  Identities=32%  Similarity=0.525  Sum_probs=65.4

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||++|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence            469999999999999999999999999999999998777889999999999999999999999999863

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.5e-19  Score=163.61  Aligned_cols=67  Identities=39%  Similarity=0.591  Sum_probs=63.4

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..+.||+||||+++|+.+|||+|||+|+++||||||++   +.++|++|.+||+|||||++|..||++|.
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~   68 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGE   68 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence            35689999999999999999999999999999999988   78999999999999999999999999864

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4.7e-19  Score=166.42  Aligned_cols=69  Identities=41%  Similarity=0.638  Sum_probs=64.3

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+ .+++++|++|++||+||+||.+|+.||.++.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~   72 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY   72 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence            47999999999999999999999999999999999764 5688999999999999999999999999763

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=6.5e-19  Score=165.18  Aligned_cols=69  Identities=35%  Similarity=0.525  Sum_probs=65.2

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||+||+||.+|..||.++.
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~   70 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH   70 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence            369999999999999999999999999999999998778889999999999999999999999999763

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=7.7e-19  Score=165.56  Aligned_cols=69  Identities=39%  Similarity=0.597  Sum_probs=65.3

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||++|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~   71 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT   71 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence            469999999999999999999999999999999998777889999999999999999999999999863

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=6.9e-19  Score=165.35  Aligned_cols=68  Identities=34%  Similarity=0.621  Sum_probs=63.9

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||++|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~   70 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH   70 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence            4699999999999999999999999999999999975 6788999999999999999999999999863

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=7.7e-19  Score=164.80  Aligned_cols=69  Identities=39%  Similarity=0.639  Sum_probs=65.4

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ...|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||++|
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G   70 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG   70 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence            357999999999999999999999999999999999877788999999999999999999999999986

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=8e-19  Score=165.73  Aligned_cols=69  Identities=45%  Similarity=0.672  Sum_probs=65.3

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.+|.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   72 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH   72 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence            469999999999999999999999999999999998777889999999999999999999999999763

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.75  E-value=6.9e-19  Score=167.37  Aligned_cols=66  Identities=41%  Similarity=0.572  Sum_probs=61.2

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ...|||+||||+++|+.+|||+|||+|+++||||++++    .++|++|++||+||+||.+|+.||.+|.
T Consensus        26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~   91 (421)
T PTZ00037         26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE   91 (421)
T ss_pred             cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence            35699999999999999999999999999999999854    4799999999999999999999999764

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=9.7e-19  Score=164.44  Aligned_cols=69  Identities=39%  Similarity=0.582  Sum_probs=65.3

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.++||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||.++.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~   71 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH   71 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence            479999999999999999999999999999999998777888999999999999999999999999753

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.2e-18  Score=158.68  Aligned_cols=68  Identities=40%  Similarity=0.667  Sum_probs=64.1

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|..||.++.
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~   70 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT   70 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence            4799999999999999999999999999999999974 6788999999999999999999999999764

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.2e-18  Score=164.32  Aligned_cols=68  Identities=37%  Similarity=0.640  Sum_probs=63.9

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|+.||++|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   70 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA   70 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence            4699999999999999999999999999999999975 6788999999999999999999999999763

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.75  E-value=1.3e-18  Score=123.16  Aligned_cols=63  Identities=48%  Similarity=0.712  Sum_probs=59.5

Q ss_pred             CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhc
Q 024126           71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYD  133 (272)
Q Consensus        71 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~~~~i~~Ay~vLsd~~~R~~YD  133 (272)
                      |||+||||+++++.++||++|+++++++|||++..+. .+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999988755 57899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=1.4e-18  Score=163.51  Aligned_cols=68  Identities=43%  Similarity=0.636  Sum_probs=63.7

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ ++++++|++|++||+||+||.+|+.||++|.
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGH   71 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence            4699999999999999999999999999999999975 6788999999999999999999999999763

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=1.5e-18  Score=163.41  Aligned_cols=67  Identities=40%  Similarity=0.593  Sum_probs=63.8

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||++|
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G   70 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFG   70 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence            5799999999999999999999999999999999985 678999999999999999999999999976

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=1.8e-18  Score=163.41  Aligned_cols=66  Identities=44%  Similarity=0.638  Sum_probs=63.4

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDE  134 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~  134 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            579999999999999999999999999999999998777789999999999999999999999998

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=1.6e-18  Score=163.92  Aligned_cols=67  Identities=40%  Similarity=0.603  Sum_probs=64.2

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      .|||+||||+++|+.+|||+|||+|+++||||++++++.+++.|++|++||+||+|+.+|+.||+++
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G   67 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG   67 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            4899999999999999999999999999999999987888999999999999999999999999875

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=1.9e-18  Score=162.73  Aligned_cols=66  Identities=36%  Similarity=0.554  Sum_probs=63.2

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      .|||+||||+++|+.+|||+|||+|+++||||++++ ++++++|++|++||+||+||.+|+.||.+|
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G   68 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGG   68 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence            699999999999999999999999999999999984 778899999999999999999999999976

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.3e-18  Score=161.91  Aligned_cols=68  Identities=41%  Similarity=0.623  Sum_probs=64.7

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++++.+++.|++|++||++|+|+.+|..||.++
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g   70 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG   70 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence            46999999999999999999999999999999999877778899999999999999999999999875

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.2e-18  Score=162.51  Aligned_cols=68  Identities=44%  Similarity=0.723  Sum_probs=63.8

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.++||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||.++.
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~   69 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH   69 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence            4699999999999999999999999999999999986 6788999999999999999999999998753

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=2.3e-18  Score=162.10  Aligned_cols=68  Identities=38%  Similarity=0.585  Sum_probs=63.8

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|+.||.+|.
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   70 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGH   70 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence            3699999999999999999999999999999999875 6688999999999999999999999999863

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=2.7e-18  Score=162.62  Aligned_cols=68  Identities=38%  Similarity=0.569  Sum_probs=64.6

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      .|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||.++.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~   70 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH   70 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            69999999999999999999999999999999998777788999999999999999999999999753

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.8e-18  Score=155.09  Aligned_cols=70  Identities=39%  Similarity=0.593  Sum_probs=67.4

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY  138 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~  138 (272)
                      ..|||+||||+.+++..+|++|||..+++||||+|+++|.+.+.|+.|.+||+||+|+.+|..||.++..
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~   73 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS   73 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            5799999999999999999999999999999999999999999999999999999999999999998653

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=4.7e-18  Score=158.45  Aligned_cols=71  Identities=38%  Similarity=0.531  Sum_probs=65.7

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ...+.||+||||..+|+..+||++||+|+++||||++++. .++++.|+.|+.||+|||||..|++||.+..
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            3567999999999999999999999999999999998774 4689999999999999999999999998754

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=9.6e-18  Score=158.45  Aligned_cols=68  Identities=41%  Similarity=0.562  Sum_probs=65.0

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|+.||.++
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G   71 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG   71 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence            47999999999999999999999999999999999887889999999999999999999999999975

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.2e-17  Score=156.81  Aligned_cols=68  Identities=41%  Similarity=0.621  Sum_probs=63.8

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.+. ++.+.|++|++||+||+|+.+|..||.+|.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~   71 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT   71 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence            69999999999999999999999999999999998654 688999999999999999999999999763

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.69  E-value=2e-17  Score=154.70  Aligned_cols=66  Identities=47%  Similarity=0.695  Sum_probs=62.1

Q ss_pred             CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        71 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      |||+||||+++|+.++||+|||+|+++||||+++ ++++++.|++|++||+||+|+.+|..||.++.
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~   66 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH   66 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence            7999999999999999999999999999999997 36688999999999999999999999999753

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2e-17  Score=155.59  Aligned_cols=67  Identities=34%  Similarity=0.565  Sum_probs=62.9

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      .|||+||||+++|+.+|||+|||+|+++||||+++. +.+++.|++|++||++|+|+.+|..||.+|.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   69 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGH   69 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence            699999999999999999999999999999999874 5678899999999999999999999999763

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.5e-17  Score=154.89  Aligned_cols=66  Identities=38%  Similarity=0.560  Sum_probs=62.9

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      .|||+||||+++|+.++||+|||+|+++||||++++ ++++++|++|++||+||+||.+|+.||.+|
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G   67 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFG   67 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence            599999999999999999999999999999999975 678899999999999999999999999975

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=2.3e-17  Score=149.76  Aligned_cols=70  Identities=37%  Similarity=0.513  Sum_probs=65.0

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY  138 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~  138 (272)
                      ...|||+||||+++|+..|||+||++|+|+||||.+.+ .++.+.|++|.+||+||+|+++|..||.++..
T Consensus        41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~  110 (288)
T KOG0715|consen   41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE  110 (288)
T ss_pred             CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence            33499999999999999999999999999999999998 48999999999999999999999999987653

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.68  E-value=2.5e-17  Score=151.10  Aligned_cols=67  Identities=34%  Similarity=0.616  Sum_probs=63.1

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ..|||+||||+++++.+|||+|||+|+++||||+++. +.+++.|++|++||++|+||.+|+.||.++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            3699999999999999999999999999999999875 578999999999999999999999999875

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=4.3e-17  Score=153.44  Aligned_cols=68  Identities=38%  Similarity=0.670  Sum_probs=63.4

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++|+.++||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||.++.
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~   69 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGE   69 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence            3699999999999999999999999999999999875 6688999999999999999999999998763

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.67  E-value=1.4e-16  Score=111.14  Aligned_cols=58  Identities=43%  Similarity=0.622  Sum_probs=54.2

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHhcCcc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-DPETTNFCMFINEVYAVLSDPV  127 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~~~~~i~~Ay~vLsd~~  127 (272)
                      .|||+||||+++++.++||++|+++++++|||++++ .+.+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999986 4678899999999999999985

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=4.9e-17  Score=151.84  Aligned_cols=74  Identities=36%  Similarity=0.486  Sum_probs=66.3

Q ss_pred             CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcCccccchhccccccc
Q 024126           66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD---PETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS  139 (272)
Q Consensus        66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~---~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~~  139 (272)
                      +....|||.+|+|+++|+.+|||+|||++++.|||||..+.   ..+++.|+.|.+|||||+||++|+.||.+|...
T Consensus         5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG   81 (546)
T KOG0718|consen    5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG   81 (546)
T ss_pred             ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence            34566999999999999999999999999999999998752   348899999999999999999999999987543

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.66  E-value=1.1e-16  Score=161.01  Aligned_cols=71  Identities=21%  Similarity=0.320  Sum_probs=65.7

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY  138 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~  138 (272)
                      ....+||+||||+++|+..+||+|||+|+++||||+++++ .+.+.|+.|++||+|||||.+|+.||.+|..
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~  640 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYD  640 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence            4568999999999999999999999999999999999874 6788999999999999999999999998653

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.65  E-value=3.4e-16  Score=107.14  Aligned_cols=55  Identities=53%  Similarity=0.788  Sum_probs=51.7

Q ss_pred             CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024126           71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD  125 (272)
Q Consensus        71 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd  125 (272)
                      |||+||||+++++.++||++|+++++++|||++++...+.+.|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999999999999999998755678999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=9.1e-17  Score=138.40  Aligned_cols=72  Identities=38%  Similarity=0.520  Sum_probs=66.0

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhcCccccchhccccccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSG--DDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS  139 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~~  139 (272)
                      ...|+|+||||..+|+..+|++||++|++++|||+++  ...++++.|++|+.||+||+|.++|+.||+.|...
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            3459999999999999999999999999999999994  44578999999999999999999999999987765

>PHA03102 Small T antigen; Reviewed

Probab=99.62  E-value=3.1e-16  Score=129.23  Aligned_cols=65  Identities=23%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             CCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126           70 DDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY  138 (272)
Q Consensus        70 ~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~  138 (272)
                      +.+|+||||+++|  |.++||+|||++++++|||++++    .+.|++||+||++|+|+.+|..||.++..
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~   71 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED   71 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence            4689999999999  99999999999999999999765    56889999999999999999999998653

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=6.5e-16  Score=131.99  Aligned_cols=73  Identities=29%  Similarity=0.418  Sum_probs=66.8

Q ss_pred             CCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        65 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ......|+|+||||+++++..|||+|||+|++++||||++...+.++.|..|++||+.|+|+..|..|..+|.
T Consensus        94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~  166 (230)
T KOG0721|consen   94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN  166 (230)
T ss_pred             HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence            4456789999999999999999999999999999999998755678899999999999999999999999864

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3.6e-15  Score=127.92  Aligned_cols=68  Identities=44%  Similarity=0.671  Sum_probs=64.5

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHhcCccccchhccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE-TTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~-~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      ...+||+||||+++|+.++||+|||++++++|||+++.++. +.+.|..|++||++|+|+.+|..||..
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            45799999999999999999999999999999999998775 889999999999999999999999985

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.56  E-value=4.3e-15  Score=146.60  Aligned_cols=67  Identities=40%  Similarity=0.615  Sum_probs=63.1

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      .|||+||||+++|+.++||+|||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~   68 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH   68 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence            599999999999999999999999999999999887 6778899999999999999999999999753

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.50  E-value=2.8e-14  Score=120.40  Aligned_cols=66  Identities=24%  Similarity=0.434  Sum_probs=58.1

Q ss_pred             CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024126           70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        70 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      .|||+||||++.  ++..+||++||++++++|||+..+.+.     +.+.+..||+||++|+||.+|+.|+..
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            489999999996  688999999999999999999765432     456889999999999999999999864

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.48  E-value=4.9e-14  Score=118.32  Aligned_cols=66  Identities=24%  Similarity=0.444  Sum_probs=57.6

Q ss_pred             CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHHHHHhcCccccchhccc
Q 024126           70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        70 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~---~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      .|||++|||++.  ++..+|+++|+++++++|||++.+..+   +.+.+..||+||+||+||.+|+.|+..
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~   72 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL   72 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            589999999986  789999999999999999999876332   234578999999999999999999874

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.47  E-value=8.1e-14  Score=118.02  Aligned_cols=68  Identities=25%  Similarity=0.425  Sum_probs=58.7

Q ss_pred             CcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHH-----HHHHHHHHHHHHhcCccccchhccc
Q 024126           68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPETT-----NFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~-----~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      ...|||+||||++.  ++..+|+++||++++++|||+....++.+     +.+..||+||++|+||.+|+.|+..
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~   78 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH   78 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence            34799999999985  68999999999999999999987654433     3458999999999999999999963

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.47  E-value=9.3e-14  Score=117.27  Aligned_cols=68  Identities=26%  Similarity=0.384  Sum_probs=60.3

Q ss_pred             CcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024126           68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      ...|||++|||++.  .+..+|+++||++++++|||+..+.++     +.+.+..||+||+||+||.+|+.|+..
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~   76 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA   76 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            46799999999987  678999999999999999999876443     456789999999999999999999974

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.44  E-value=1.5e-13  Score=125.26  Aligned_cols=68  Identities=32%  Similarity=0.472  Sum_probs=62.7

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcCccccchhccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      ..+|||.||||.++|+..||.+|||+++.++|||-..+..   .++++|..|..|-+||+||++|+.||..
T Consensus       392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence            5689999999999999999999999999999999988744   3788999999999999999999999974

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.42  E-value=2.6e-13  Score=106.57  Aligned_cols=57  Identities=28%  Similarity=0.395  Sum_probs=49.9

Q ss_pred             CCCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhc
Q 024126           64 STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS  124 (272)
Q Consensus        64 ~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLs  124 (272)
                      ...+...++|+||||+++++.+|||++||+|++++|||++++    .+.+++|++||++|.
T Consensus        59 ~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~  115 (116)
T PTZ00100         59 ENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL  115 (116)
T ss_pred             cCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence            334556799999999999999999999999999999999644    567889999999995

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=5.1e-13  Score=125.08  Aligned_cols=68  Identities=28%  Similarity=0.369  Sum_probs=64.2

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      ....|+|.+|||+.+++.++||+.||+++...|||||- .+.+++.|+.|+.||++|+|+.+|..||..
T Consensus       232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e  299 (490)
T KOG0720|consen  232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE  299 (490)
T ss_pred             hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            34789999999999999999999999999999999999 488999999999999999999999999964

>COG1141 Fer Ferredoxin [Energy production and conversion]

Probab=99.35  E-value=4.1e-13  Score=95.64  Aligned_cols=59  Identities=39%  Similarity=0.725  Sum_probs=49.3

Q ss_pred             ccccCcccccccCcccCCCCcceeecccccceEEccC--------CCCHHHHHHHHHhCccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--------CGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q--------~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      .+.+|+..|||||.|...+|++|.++++ |.+.+...        .++.+.+++|+.+||++||+|.+
T Consensus         2 ~v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~~   68 (68)
T COG1141           2 RVIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVEE   68 (68)
T ss_pred             EEEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEecC
Confidence            4678999999999999999999999998 87755322        23347899999999999999853

>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A

Probab=99.32  E-value=3.4e-13  Score=93.89  Aligned_cols=55  Identities=42%  Similarity=0.733  Sum_probs=40.8

Q ss_pred             cCcccccccCcccCCCCcceeecccccceEEccCC---CCHHHHHHHHHhCccccccc
Q 024126          158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQC---GINEFVQQAIESCPVDCIHR  212 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~---g~~e~i~~Av~~CP~~aI~~  212 (272)
                      ||...||+||.|..++|++|.++++.|.+.++.|.   .+.+.+++|+.+||++||+|
T Consensus         1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v   58 (58)
T PF13370_consen    1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV   58 (58)
T ss_dssp             E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred             CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence            57788999999999999999999986777777773   23568999999999999985

...

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=6.6e-13  Score=115.99  Aligned_cols=68  Identities=34%  Similarity=0.535  Sum_probs=62.8

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ..+|.|+||||.++++..+|.+|||+|++++|||++++ ++..+.|..|..||++|.|...|..||-..
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHh
Confidence            45699999999999999999999999999999999998 566789999999999999999999999643

>PF13459 Fer4_15: 4Fe-4S single cluster domain

Probab=99.30  E-value=1.4e-12  Score=92.82  Aligned_cols=56  Identities=46%  Similarity=0.825  Sum_probs=48.8

Q ss_pred             cccCcccccccCcccCCCCcceeecccccceEEccC---------CCCHHHHHHHHHhCccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHR  212 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q---------~g~~e~i~~Av~~CP~~aI~~  212 (272)
                      |++|+..|+|||.|...+|++|.++++ |.+.++..         ..+.+.+++|++.||++||+|
T Consensus         1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v   65 (65)
T PF13459_consen    1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV   65 (65)
T ss_pred             CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence            568999999999999999999999988 88766642         345689999999999999986

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.28  E-value=4.6e-12  Score=114.16  Aligned_cols=59  Identities=25%  Similarity=0.379  Sum_probs=52.2

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHHHHHhcC
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD---D----PETTNFCMFINEVYAVLSD  125 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~----~~~~~~~~~i~~Ay~vLsd  125 (272)
                      ....++|+||||++++|.++||++||+|+++||||+..+   +    +.++++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            455799999999999999999999999999999999643   1    2478899999999999985

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=4.4e-12  Score=113.72  Aligned_cols=69  Identities=38%  Similarity=0.563  Sum_probs=62.2

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||.||||.++|+.++||+||+++++++|||+++.. ..+...|.+|.+||++|+|+.+|..||.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            46999999999999999999999999999999998774 2345578999999999999999999999875

>PHA02624 large T antigen; Provisional

Probab=99.23  E-value=7.2e-12  Score=122.53  Aligned_cols=60  Identities=28%  Similarity=0.398  Sum_probs=56.1

Q ss_pred             cCCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchh
Q 024126           69 ADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY  132 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~Y  132 (272)
                      .+++|++|||+++|  +.++||+|||++++++|||++++    ++.|++||+||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence            45899999999999  99999999999999999999754    67899999999999999999998

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=7.1e-12  Score=116.48  Aligned_cols=68  Identities=32%  Similarity=0.557  Sum_probs=64.2

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      +..|||.|||+..+++..+||+|||++++.+|||++... .+++..|+++-+||.+|+||.+|..||..
T Consensus       371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            578999999999999999999999999999999999876 67889999999999999999999999974

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.18  E-value=3.8e-11  Score=101.41  Aligned_cols=65  Identities=20%  Similarity=0.298  Sum_probs=56.9

Q ss_pred             CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhcc
Q 024126           70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE  134 (272)
Q Consensus        70 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~  134 (272)
                      .|||++|||++.  .+..++++.|+++.+++|||+....++     +.+....||+||.+|+||.+|+.|=.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            699999999986  899999999999999999999866432     34466889999999999999999954

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.7e-11  Score=108.12  Aligned_cols=124  Identities=26%  Similarity=0.348  Sum_probs=90.4

Q ss_pred             CCCCCCCcCCcccccCcCC---CCCHHHHHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           62 SASTDAIADDYYAVLGLLP---DATPEQIKKAYYNCMKACHPDLS--GDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        62 ~~~~~~~~~d~Y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPD~~--~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ....+|...|+|.+|||+.   .+++.+|.++.++.+.+||||+.  +++-...++|..|+.||+||+|+.+|..||.. 
T Consensus        35 ~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~-  113 (379)
T COG5269          35 EDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN-  113 (379)
T ss_pred             hhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc-
Confidence            3455678899999999994   68999999999999999999996  23345788999999999999999999999984 


Q ss_pred             ccccccCCCCCCCCCCCCccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHH
Q 024126          137 GYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAI  202 (272)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av  202 (272)
                               +++...+...++.+....       .+...+|+-+..|.....++..|..+....-|
T Consensus       114 ---------df~advppp~~~t~~~Ff-------e~w~pvFe~earFSkKqPvPsLg~~dss~keV  163 (379)
T COG5269         114 ---------DFDADVPPPRIYTPDEFF-------EVWEPVFEREARFSKKQPVPSLGPSDSSLKEV  163 (379)
T ss_pred             ---------ccccCCCCccCCCchhHH-------HHHHHHHHhhhhccccCCCCCCCCchhHHHHH
Confidence                     222333334444433332       44556777777777776666666555433333

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.10  E-value=5.3e-11  Score=111.37  Aligned_cols=69  Identities=28%  Similarity=0.338  Sum_probs=62.5

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-----DPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~-----~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ..-|+|||||++.+++..+||++||+|+.+|||||.+.     ..+-++.+.+|++||..|+|...|..|-.+|
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG  169 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG  169 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence            45699999999999999999999999999999999876     2356788999999999999999999998774

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.98  E-value=7.8e-10  Score=92.14  Aligned_cols=55  Identities=20%  Similarity=0.339  Sum_probs=47.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcCccccchhccc
Q 024126           81 DATPEQIKKAYYNCMKACHPDLSGDDP-----ETTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        81 ~a~~~~Ik~ayr~l~~~~HPD~~~~~~-----~~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      +.+..+|+++|+++++++|||+..+..     .+.+.+..||+||++|+||.+|+.|+..
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            357899999999999999999965432     2567889999999999999999999975

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2e-09  Score=91.26  Aligned_cols=68  Identities=25%  Similarity=0.349  Sum_probs=60.9

Q ss_pred             CCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchh
Q 024126           65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVY  132 (272)
Q Consensus        65 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~Y  132 (272)
                      +..-..|+|+||.|.++.+.++||+.||+|++..|||+|+++ +-+...|-.|.+||..|-|+..|..-
T Consensus        48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~  116 (250)
T KOG1150|consen   48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC  116 (250)
T ss_pred             ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            345678999999999999999999999999999999999998 45788999999999999999866543

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1e-07  Score=73.05  Aligned_cols=66  Identities=26%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             ccccCCCCCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCcc
Q 024126           58 TAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV  127 (272)
Q Consensus        58 ~~~~~~~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~  127 (272)
                      .....+.+.+.....-.||||.+.++.+.||+|+|+++...|||+.++ |   -.-.+||||+++|....
T Consensus        44 ~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~~  109 (112)
T KOG0723|consen   44 FYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGTS  109 (112)
T ss_pred             hhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhccc
Confidence            334466777888899999999999999999999999999999999988 3   23368999999997643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=2.1e-07  Score=94.81  Aligned_cols=59  Identities=22%  Similarity=0.381  Sum_probs=50.2

Q ss_pred             CCCCCcCCcccccCcCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024126           64 STDAIADDYYAVLGLLPD----ATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD  125 (272)
Q Consensus        64 ~~~~~~~d~Y~iLgv~~~----a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd  125 (272)
                      +..+...+.|+||.|+-+    -..++||++|++|+.+||||||+.   ..++|..+|+||+.|..
T Consensus      1275 P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1275 PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLSS 1337 (2235)
T ss_pred             CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHHH
Confidence            444566789999999843    356899999999999999999965   78999999999999983

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.8e-07  Score=79.98  Aligned_cols=57  Identities=21%  Similarity=0.443  Sum_probs=50.5

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-HhcC
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA-VLSD  125 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~-vLsd  125 (272)
                      .-..+|.||||..+++.++++.+|.+|++++|||.+.+ ....+.|.+|.+||. ||+.
T Consensus        45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence            44689999999999999999999999999999998766 456788999999998 7764

>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues

Probab=98.03  E-value=4.2e-06  Score=59.26  Aligned_cols=58  Identities=26%  Similarity=0.370  Sum_probs=48.2

Q ss_pred             CccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      -.+..|...|++-|.|...+|++|..+++ |-.  .....+.+.+.++++.||.+||.+.+
T Consensus         6 i~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~v--~~d~a~~~~v~~~v~~CPSGAL~~~~   63 (64)
T PF06902_consen    6 ITVTWDRERCIHAGFCVRGAPEVFDQDDE-PWV--SPDEASAEEVREAVDRCPSGALSYWD   63 (64)
T ss_pred             EEEEECcCcccchhhhhcCCCCcccCCCC-CcC--CcCccCHHHHHHHHHcCCccCcEEee
Confidence            34677889999999999999999999886 433  33356779999999999999998764

These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=7.9e-05  Score=61.15  Aligned_cols=67  Identities=24%  Similarity=0.479  Sum_probs=54.7

Q ss_pred             CcCCcccccCcCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhcCccccchhcc
Q 024126           68 IADDYYAVLGLLP--DATPEQIKKAYYNCMKACHPDLSGDD-----PETTNFCMFINEVYAVLSDPVQRMVYDE  134 (272)
Q Consensus        68 ~~~d~Y~iLgv~~--~a~~~~Ik~ayr~l~~~~HPD~~~~~-----~~~~~~~~~i~~Ay~vLsd~~~R~~YD~  134 (272)
                      ...+||.++|...  ..+++.++.-|....++.|||+.+..     ..+.+...+||+||.+|.||-.|+.|=.
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4568999998664  56778888899999999999985431     2366778999999999999999999954

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=97.27  E-value=2.3e-05  Score=54.58  Aligned_cols=53  Identities=28%  Similarity=0.581  Sum_probs=29.4

Q ss_pred             ccCcccccccCcccCCCCc----ceeecccccceEEccCCCCHHHHHHHHHhCcc-ccccc
Q 024126          157 FVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHR  212 (272)
Q Consensus       157 ~vDe~~Cigcg~C~~~ap~----vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~-~aI~~  212 (272)
                      .+|+.+|||||.|...+|.    .+.++++ +... +. .....-....+..||| +||++
T Consensus         2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~-~~~~-v~-~~~C~GCg~C~~~CPv~~AI~m   59 (59)
T PF14697_consen    2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEG-KKVP-VN-PDKCIGCGLCVKVCPVKDAITM   59 (59)
T ss_dssp             EE-TTT----SCCCHHCCCCS-S-ECCTTT-TSSE-CE--TT--S-SCCCCCSSSTTSEEE
T ss_pred             EECcccccChhhHHhHcCccceeeEEecCC-eeEE-ec-cccCcCcCcccccCCCccCCCC
Confidence            4688999999999999994    3444443 2222 22 2334455578899998 99974

...

>COG1146 Ferredoxin [Energy production and conversion]

Probab=97.23  E-value=0.00014  Score=51.80  Aligned_cols=60  Identities=30%  Similarity=0.471  Sum_probs=44.4

Q ss_pred             cccCcccccccCcccCCCC-cceeeccc-ccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126          156 VFVDEFSCIGCKNCNNVAP-EVFKIEED-FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d-~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~  216 (272)
                      +.+|...|+||+.|..++| ++|.+.++ .+...+++. .+.-.....+..||++||.+....
T Consensus         3 ~~Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~-e~C~~C~~C~~~CP~~aI~~~~~~   64 (68)
T COG1146           3 IVIDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARP-EECIDCGLCELACPVGAIKVDILR   64 (68)
T ss_pred             eEECchhcCCCChheeccChhhEEeccccCcceeEecc-ccCccchhhhhhCCcceEEEeccc
Confidence            3578888999999999999 77888764 244444443 333347789999999999976654

>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]

Probab=97.18  E-value=8.4e-05  Score=62.77  Aligned_cols=66  Identities=27%  Similarity=0.541  Sum_probs=46.0

Q ss_pred             CCccccCcccccccCcccCCCC-cceeeccc----ccceEEcc-C--CCCHHHHHHHHHhCcccccccccchhh
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEED----FGRARVYN-Q--CGINEFVQQAIESCPVDCIHRTSAQQL  218 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d----~g~a~v~~-q--~g~~e~i~~Av~~CP~~aI~~~~~~~l  218 (272)
                      .+...++...||||+.|..+|| +...|+.+    .|..+... +  .|-.--+.-+++.|||+||.....-++
T Consensus        47 RG~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~e~  120 (172)
T COG1143          47 RGRHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEFEL  120 (172)
T ss_pred             cceeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcCCcceee
Confidence            4556678888999999999999 55666532    13322221 1  555567779999999999997665433

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J

Probab=97.12  E-value=9.2e-05  Score=50.17  Aligned_cols=48  Identities=29%  Similarity=0.666  Sum_probs=29.2

Q ss_pred             cccccCcccCCCC-cceeecccccceEEccCCC------CHHHHHHHHHhCccccc
Q 024126          162 SCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCG------INEFVQQAIESCPVDCI  210 (272)
Q Consensus       162 ~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g------~~e~i~~Av~~CP~~aI  210 (272)
                      +||+|+.|..++| .++.++.. +.........      ........++.||++||
T Consensus         1 kCi~Cg~C~~~CP~~~~~~~~~-~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI   55 (55)
T PF13187_consen    1 KCIGCGRCVEACPVGVIEFDED-GGKKVVDKDNERRNAEKCIGCGACVKACPTGAI   55 (55)
T ss_dssp             C--TTTHHHHHSTTT-EEEETT-TTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred             CCCCcchHHHHCCccCeEccCc-cccccccccccCCCCCccccHhHHHHHcchhhC
Confidence            4999999999999 55666654 3333333221      34456689999999998

>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]

Probab=97.05  E-value=0.00014  Score=60.82  Aligned_cols=69  Identities=28%  Similarity=0.445  Sum_probs=46.3

Q ss_pred             CCccccCcccccccCcccCCCC-cceeecccc----cceEEccCCCCHHHHHHHHHhCcccccccccchhhhhH
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDF----GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL  221 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~----g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~l  221 (272)
                      .+.+.||+.+|||||.|..+|| ..+.|...-    +.+..-+.-.+.+.--..+.+||++|+..++...+..+
T Consensus        74 ~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~~~~~~~~  147 (165)
T COG1142          74 DGAVQVDEEKCIGCKLCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVGPACVEACPTEALELVDEIVLERL  147 (165)
T ss_pred             CCceEEchhhccCcchhhhcCCcceEEEEeecCcchhhhhhcccccCccCCCceeeeCCHHHhhcccHHHhhhh
Confidence            5678899999999999999999 445555420    11212222222222267899999999999998774433

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional

Probab=97.03  E-value=0.00035  Score=55.39  Aligned_cols=61  Identities=23%  Similarity=0.561  Sum_probs=43.9

Q ss_pred             CCccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ...+.+|...|++|+.|..+||. .+.+.++.+. ..+. .+....+..+++.||++||.+...
T Consensus        34 ~g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~-~~i~-~~~C~~Cg~Cv~~CP~~Ai~~~~~   95 (120)
T PRK08348         34 RGKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRK-VALW-TGRCVFCGQCVDVCPTGALQMSDD   95 (120)
T ss_pred             cceEEECcccCcCcccHHHHCCccceEccccccc-eEec-CCcCcChhhhHHhCCcCcEEeccc
Confidence            35677899999999999999994 4555443122 2222 344566789999999999998764

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed

Probab=96.96  E-value=0.00021  Score=55.20  Aligned_cols=64  Identities=23%  Similarity=0.359  Sum_probs=44.2

Q ss_pred             CccccCcccccccCcccCCCCc-ceeeccccc----ce-EEccCCCCHHHHHHHHHhCcccccccccchhh
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFG----RA-RVYNQCGINEFVQQAIESCPVDCIHRTSAQQL  218 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g----~a-~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l  218 (272)
                      ..+.+|...|++|+.|..+||. .|.+.++..    .. .+++ ......+..++..||++||.+....+.
T Consensus         9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~-~~~C~~C~~C~~~CP~~AI~~~~~~~~   78 (103)
T PRK09626          9 TPVWVDESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVH-PESCIGCRECELHCPDFAIYVADRKEF   78 (103)
T ss_pred             CCeEECcccccCCcchhhhcChhhhccccccccccCceeeEeC-CccCCCcCcchhhCChhhEEEecccce
Confidence            4566789999999999999994 676654311    11 1222 223345678999999999999876543

>CHL00065 psaC photosystem I subunit VII

Probab=96.82  E-value=0.00031  Score=51.77  Aligned_cols=60  Identities=18%  Similarity=0.287  Sum_probs=39.5

Q ss_pred             cccCcccccccCcccCCCC-cceeeccccc---ceE-EccCCCCHHHHHHHHHhCcccccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG---RAR-VYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g---~a~-v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ..++...|++|+.|..++| +.+.++++.+   ... .....+.......++..||++||.+...
T Consensus         4 ~~~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~   68 (81)
T CHL00065          4 SVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY   68 (81)
T ss_pred             ccCccccCCChhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEEE
Confidence            3456678999999999999 6666654311   111 1111233345678999999999997654

>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit

Probab=96.78  E-value=0.0007  Score=54.82  Aligned_cols=65  Identities=20%  Similarity=0.425  Sum_probs=46.8

Q ss_pred             cccCcccccccC-----cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhH
Q 024126          156 VFVDEFSCIGCK-----NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL  221 (272)
Q Consensus       156 v~vDe~~Cigcg-----~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~l  221 (272)
                      +++|+..|++|+     .|..+||. .+.++++...+..+. ......+..++..||.+||.+....++..+
T Consensus         3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id-~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~   73 (132)
T TIGR02060         3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIE-PDMCWECYSCVKACPQGAIDVRGYADFAPL   73 (132)
T ss_pred             CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecC-chhCccHHHHHHhCCcCceEEECccccccc
Confidence            468899999999     99999994 566665312332332 233446789999999999999877766544

During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.

>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]

Probab=96.64  E-value=0.00095  Score=57.72  Aligned_cols=67  Identities=22%  Similarity=0.363  Sum_probs=46.9

Q ss_pred             CCccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhhhhH
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQLSLL  221 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~~l  221 (272)
                      .+-|.+|...||||+.|...|| ..-.++.+.+.+..-.-  -.+.+.     ..+++||++|+.+.+.+|++..
T Consensus        92 dGiV~vd~d~CIGC~yCi~ACPyga~~~~~~~~~~~KCt~--C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~~  164 (203)
T COG0437          92 DGIVLVDKDLCIGCGYCIAACPYGAPQFNPDKGVVDKCTF--CVDRVAVGKLPACVEACPTGALIFGDIDDPKSK  164 (203)
T ss_pred             CCEEEecCCcccCchHHHhhCCCCCceeCcccCcccccCc--chhhHhcCCCCcccccCCcccccccchhhcchh
Confidence            4568899999999999999999 44445554343222211  122222     6899999999999888877654

>PLN00071 photosystem I subunit VII; Provisional

Probab=96.62  E-value=0.00059  Score=50.17  Aligned_cols=60  Identities=20%  Similarity=0.331  Sum_probs=39.8

Q ss_pred             cccCcccccccCcccCCCC-cceeeccccc-ceEEc---cCCCCHHHHHHHHHhCcccccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG-RARVY---NQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g-~a~v~---~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .+++...|++|+.|..++| +.+.+++..+ .....   ...+....+..+++.||++||.+...
T Consensus         4 ~~~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~   68 (81)
T PLN00071          4 PVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY   68 (81)
T ss_pred             CeEcCCcCcChhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeee
Confidence            3556678999999999999 5576654212 11111   12233446679999999999987443

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.0012  Score=55.79  Aligned_cols=54  Identities=30%  Similarity=0.395  Sum_probs=45.6

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHh
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-------PETTNFCMFINEVYAVL  123 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-------~~~~~~~~~i~~Ay~vL  123 (272)
                      .+.|.+||+...++..+|+++|+++...+|||+....       ....+.+++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999985331       13567778899998754

>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B

Probab=96.58  E-value=0.00041  Score=53.30  Aligned_cols=62  Identities=27%  Similarity=0.566  Sum_probs=37.5

Q ss_pred             CCccccCcccccccCcccCCCC-cceeecccccceEEccCCCCH---HHHHHHHHhCccccccccc
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGIN---EFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~---e~i~~Av~~CP~~aI~~~~  214 (272)
                      .+.+.+|+..|+||+.|...+| ....++.+.+.+..-+--.+.   ...-..+..||++||.+.+
T Consensus        32 ~G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~   97 (98)
T PF13247_consen   32 DGIVVIDEDKCIGCGYCVEACPYGAIRFDPDTGKARKCDLCIDRIEEGEEPACVEACPTGALTFGD   97 (98)
T ss_dssp             TS-EEE-TTTCCTHHHHHHH-TTS-EEEETTTTCEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred             CCeEEechhhccCchhhhhhhccCcceeecccccCCcCceehhhhhcCCCChhHHhccccceEEec
Confidence            4668899999999999999999 666677665654433221111   1224789999999998865

...

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific

Probab=96.57  E-value=0.00085  Score=50.25  Aligned_cols=61  Identities=23%  Similarity=0.435  Sum_probs=40.0

Q ss_pred             CCccccCcccccccCcccCCCC-cceeecc--ccc----------c----eEEccCCCCHHHHHHHHHhCcccccccc
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEE--DFG----------R----ARVYNQCGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~--d~g----------~----a~v~~q~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      ...+.+|...|++|+.|..++| +.+.++.  +.+          .    ...............++..||++||..+
T Consensus        13 ~~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~   90 (91)
T TIGR02936        13 QFVTSIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA   90 (91)
T ss_pred             ceeEEECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence            3446779999999999999998 5555542  001          1    0111123334466789999999999865

Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.

>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed

Probab=96.54  E-value=0.00097  Score=51.75  Aligned_cols=58  Identities=26%  Similarity=0.454  Sum_probs=41.2

Q ss_pred             ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .+.+|...|++|+.|...+|. .+.++++ +.. +++ .+....+..+++.||++||.+...
T Consensus        45 ~p~i~~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id-~~~C~~Cg~Cv~~CP~~AI~~~~~  103 (105)
T PRK09623         45 MPVVDESKCVKCYICWKFCPEPAIYIKED-GYV-AID-YDYCKGCGICANECPTKAITMVKE  103 (105)
T ss_pred             eEEECcccCccccchhhhCCHhheEecCC-CcE-EeC-chhCcCcchhhhhcCcCcEEeccc
Confidence            456788999999999999985 4555543 322 222 223345668999999999988754

>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]

Probab=96.42  E-value=0.00054  Score=51.26  Aligned_cols=58  Identities=29%  Similarity=0.378  Sum_probs=39.7

Q ss_pred             ccccCcccccccCcccCCCCcc-eeecccccce-EEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRA-RVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a-~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ...+|+.+|++|++|+..||+. +.+.++.... .-++   -..=+--++..||++||.++..
T Consensus        29 rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~idYd---yCKGCGICa~vCP~kaI~Mv~E   88 (91)
T COG1144          29 RPVVDEDKCINCKLCWLYCPEPAILEEEGGYKVRIDYD---YCKGCGICANVCPVKAIEMVRE   88 (91)
T ss_pred             eeEEcccccccCceeEEECCchheeeccCCccceeEcc---cccCceechhhCChhheEeEee
Confidence            4568999999999999999976 5555542222 1111   1122337889999999998764

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC

Probab=96.40  E-value=0.0012  Score=48.49  Aligned_cols=59  Identities=19%  Similarity=0.332  Sum_probs=39.0

Q ss_pred             cccCcccccccCcccCCCC-cceeecccccc--eEE-c-cCCCCHHHHHHHHHhCccccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGR--ARV-Y-NQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~--a~v-~-~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ++.+...|++|+.|..++| ..+.+++..+.  ..+ . ...+.......+++.||++||.+..
T Consensus         3 ~~~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~   66 (80)
T TIGR03048         3 SVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRV   66 (80)
T ss_pred             ceecCCcCcCcchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEE
Confidence            3456677999999999999 55666542121  111 1 1123344667999999999998743

Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.

>PRK13984 putative oxidoreductase; Provisional

Probab=96.39  E-value=0.0012  Score=65.99  Aligned_cols=61  Identities=21%  Similarity=0.529  Sum_probs=39.5

Q ss_pred             ccccCcccccccCcccCCCCcc-eee------cccccce--EEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-FKI------EEDFGRA--RVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-F~~------e~d~g~a--~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .+.+|...|++|+.|...||.. +.+      ++.+|..  ...........+..+++.||++||.+...
T Consensus        39 ~~~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~~~  108 (604)
T PRK13984         39 FHINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMTRE  108 (604)
T ss_pred             ccccChhhCcCccchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEecce
Confidence            3557889999999999999932 222      2222322  11111223345678999999999998653

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated

Probab=96.38  E-value=0.0099  Score=52.60  Aligned_cols=62  Identities=19%  Similarity=0.414  Sum_probs=41.8

Q ss_pred             CccccCcccccccCcccCCCCc---ceeec--ccccceEEccC-------CCCHHHHHHHHHhCcccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPE---VFKIE--EDFGRARVYNQ-------CGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~---vF~~e--~d~g~a~v~~q-------~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ..+.+|...|++|+.|...|++   .+.++  .......+...       ......+..+++.||++||.....
T Consensus       139 ~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~  212 (234)
T PRK07569        139 PRFGIDHNRCVLCTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS  212 (234)
T ss_pred             CcEEeehhhCcCccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence            4567899999999999999984   23332  22123333321       123345688999999999998766

>PRK02651 photosystem I subunit VII; Provisional

Probab=96.29  E-value=0.0015  Score=47.89  Aligned_cols=57  Identities=21%  Similarity=0.350  Sum_probs=36.8

Q ss_pred             cCcccccccCcccCCCC-cceeeccccc-ceEEc---cCCCCHHHHHHHHHhCccccccccc
Q 024126          158 VDEFSCIGCKNCNNVAP-EVFKIEEDFG-RARVY---NQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap-~vF~~e~d~g-~a~v~---~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      .....|++|+.|..+|| ..+.+++..+ ....+   ...+.......++..||++||.+..
T Consensus         6 ~~~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~   67 (81)
T PRK02651          6 KIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV   67 (81)
T ss_pred             cccccCCCcchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEE
Confidence            34567999999999999 5566543211 11111   1123334567899999999999643

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=96.29  E-value=0.008  Score=48.28  Aligned_cols=58  Identities=19%  Similarity=0.242  Sum_probs=40.9

Q ss_pred             CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCcc
Q 024126           66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV  127 (272)
Q Consensus        66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~  127 (272)
                      .+.......||||++..+.++|.+.|.+|....+|+++++    .-.-.+|..|.+.|....
T Consensus        54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence            4566678999999999999999999999999999998877    333456888888886544

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PRK08222 hydrogenase 4 subunit H; Validated

Probab=96.25  E-value=0.001  Score=56.63  Aligned_cols=67  Identities=21%  Similarity=0.332  Sum_probs=45.1

Q ss_pred             CCCccccCcccccccCcccCCCCc-ceeeccc--ccceEEccCCCCHHHHHHHHHhCcccccccccchhh
Q 024126          152 PKDHVFVDEFSCIGCKNCNNVAPE-VFKIEED--FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQL  218 (272)
Q Consensus       152 ~~~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d--~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l  218 (272)
                      ..+.+.+|...|++|+.|..+||. .+.++.+  .|........+....+..+++.||++||.+...-++
T Consensus        29 ~rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~~   98 (181)
T PRK08222         29 FRGKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFEL   98 (181)
T ss_pred             ccCceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEeccceee
Confidence            345678899999999999999984 3444432  121111122344556679999999999998765443

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein

Probab=96.24  E-value=0.0027  Score=54.18  Aligned_cols=67  Identities=24%  Similarity=0.530  Sum_probs=43.1

Q ss_pred             CCccccCcccccccCcccCCCCcc-eeeccccc----c---eEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFG----R---ARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g----~---a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~  219 (272)
                      ...+.++...|++|+.|..+||.. +.+..+.+    .   .......+....+..+++.||++||.+....++.
T Consensus        54 rG~i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~  128 (183)
T TIGR00403        54 RGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS  128 (183)
T ss_pred             cceEEeCcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecccccccc
Confidence            345778889999999999999953 22111100    0   0111123445567799999999999987765443

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.0024  Score=54.08  Aligned_cols=64  Identities=28%  Similarity=0.408  Sum_probs=50.1

Q ss_pred             CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhcc
Q 024126           71 DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE  134 (272)
Q Consensus        71 d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~  134 (272)
                      +++.++|....+  ..+.++..|+.+++.+|||+....+.     ..+.+..+|.||.+|.||-.|..|=.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            455556666543  56778999999999999999877443     33467889999999999999999843

>PRK06991 ferredoxin; Provisional

Probab=96.17  E-value=0.0024  Score=57.84  Aligned_cols=60  Identities=23%  Similarity=0.470  Sum_probs=41.1

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~  216 (272)
                      ..+.+|+..|++|+.|..+|| +.+.+.++ +.. .+. ......+..++..||++||.+....
T Consensus        78 ~~~~id~~~CigCg~Cv~aCP~~AI~~~~~-~~~-~v~-~~~CigCg~Cv~vCP~~AI~~~~~~  138 (270)
T PRK06991         78 AVAVIDEQLCIGCTLCMQACPVDAIVGAPK-QMH-TVL-ADLCTGCDLCVPPCPVDCIDMVPVT  138 (270)
T ss_pred             ceeEEccccCCCCcHHHHhCCHhheecccc-cce-eeC-HhhCCCchHHHhhCCcCCeEeecCc
Confidence            345678899999999999999 34444332 222 221 2334456789999999999876543

>COG3592 Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.005  Score=43.59  Aligned_cols=56  Identities=18%  Similarity=0.441  Sum_probs=45.0

Q ss_pred             ccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      .++.+...|+.-++|..-.|.+|.+..   +.=...+..+.+.++..+++||.+||...
T Consensus        17 di~fn~~iC~Hs~nCV~Gn~~vF~~~r---kPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~   72 (74)
T COG3592          17 DIYFNTAICAHSGNCVRGNPKVFNLGR---KPWIMPDAVDVEEIVKVIDTCPSGALKYR   72 (74)
T ss_pred             EEEeccceeecccceecCCHhhcccCC---CCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence            355567779999999999999998853   22344557789999999999999999864

>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing

Probab=96.14  E-value=0.002  Score=58.75  Aligned_cols=69  Identities=19%  Similarity=0.308  Sum_probs=45.8

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCH---HHHHHHHHhCcccccccccchhhhhHH
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGIN---EFVQQAIESCPVDCIHRTSAQQLSLLE  222 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~---e~i~~Av~~CP~~aI~~~~~~~l~~le  222 (272)
                      ..+.+|+..|+||+.|...|| +...++++.+.+..-.-..+.   ...-.++.+||++||.+.+.+++....
T Consensus       117 G~V~id~dkCigC~~Cv~aCP~~a~~~~~~~~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~~a  189 (283)
T TIGR01582       117 GIVDFDHSKCIGCGYCIVGCPFNIPRYDKVDNRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERA  189 (283)
T ss_pred             CcEEEeHHHCCcchHHHhhCCCCCcEEcCCCCChhhhcccccccccCCCChHhCcccHhhEEECCHHHHHHHH
Confidence            456789999999999999998 456666542322111101100   011268999999999999988776554

In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.

>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family

Probab=96.11  E-value=0.0026  Score=57.87  Aligned_cols=61  Identities=23%  Similarity=0.532  Sum_probs=40.6

Q ss_pred             CCccccCcccccccCcccCCCCcc-eeec--ccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIE--EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap~v-F~~e--~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ...+.+|...|++|+.|..+||.. ..++  .+ +...+.........+..++..||++||.+..
T Consensus        40 ~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~-~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g  103 (295)
T TIGR02494        40 SPELLFKENRCLGCGKCVEVCPAGTARLSELAD-GRNRIIIRREKCTHCGKCTEACPSGALSIVG  103 (295)
T ss_pred             CceEEEccccCCCCchhhhhCcccccccccccC-CCcceeechhhcCchhHhhccCcHhHHhhhc
Confidence            456788999999999999999843 1111  11 1111222233345677999999999999854

This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional

Probab=96.05  E-value=0.0026  Score=54.07  Aligned_cols=67  Identities=25%  Similarity=0.483  Sum_probs=45.0

Q ss_pred             CCccccCcccccccCcccCCCCc-ceeecccc--cceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAPE-VFKIEEDF--GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~--g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~  219 (272)
                      ...+.+|...|++|+.|..+||. .+.++.+.  |........+....+..++..||++||.+...-++.
T Consensus        30 rg~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~~~~~~   99 (180)
T PRK12387         30 RGKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEFELA   99 (180)
T ss_pred             CCceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccCccchh
Confidence            35577899999999999999984 45555431  211111123344456789999999999987654443

>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional

Probab=95.94  E-value=0.018  Score=53.12  Aligned_cols=60  Identities=23%  Similarity=0.416  Sum_probs=38.3

Q ss_pred             ccccCcccccccCcccCCCCcceee---cccc---cc---eEEcc-CCCCHHHHHHHHHhCccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEVFKI---EEDF---GR---ARVYN-QCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~vF~~---e~d~---g~---a~v~~-q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ...+|...|++|+.|...||.....   ....   +.   ..+.. ....+..+..+++.||++||.++.
T Consensus       241 ~p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~  310 (312)
T PRK14028        241 KPVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR  310 (312)
T ss_pred             ceEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence            4456889999999999999954211   1100   11   11111 123345677899999999998764

>PRK00783 DNA-directed RNA polymerase subunit D; Provisional

Probab=95.94  E-value=0.009  Score=53.76  Aligned_cols=97  Identities=16%  Similarity=0.306  Sum_probs=66.0

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhhhc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVN  232 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~~~  232 (272)
                      ..+.+ ...|++|+.|...|| .+|.+++  |...+.. ......+.+++..||.+||.+...++-              
T Consensus       163 p~I~i-~~~C~~C~~C~~~CP~~vi~~~~--~~~~v~~-~~~C~~C~~Ci~~CP~~AI~i~~~~~~--------------  224 (263)
T PRK00783        163 PRIEV-SEDCDECEKCVEACPRGVLELKE--GKLVVTD-LLNCSLCKLCERACPGKAIRVSDDENK--------------  224 (263)
T ss_pred             ccccc-cccCCchHHHHHhCCccccEecC--CeEEEeC-hhhCCCchHHHHhCCCCceEEEEcCCe--------------
Confidence            33455 678999999999999 4788876  4444442 223345678889999999998765321              


Q ss_pred             eeeecCCCCCC-cchhHHHHHHHHHhHHHHHHHHhhh
Q 024126          233 VAMMLSGMGSG-SADVFRMASSRWERRQAKVLVCYVH  268 (272)
Q Consensus       233 v~~~~~g~g~~-~~~~f~~~~~~~~~~~~~~~~~~~~  268 (272)
                      ..+.+-.-|.= ..+.|..|...++.+-.++++....
T Consensus       225 ~if~vEs~G~l~p~~iv~~A~~~l~~k~~~~~~~~~~  261 (263)
T PRK00783        225 FIFTVESDGSLPVEEILLEALKILKRKADELIEALEE  261 (263)
T ss_pred             EEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            11223343543 4889988888888888777766543

>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed

Probab=95.91  E-value=0.0028  Score=51.35  Aligned_cols=58  Identities=16%  Similarity=0.249  Sum_probs=39.5

Q ss_pred             ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .+.+|...|++|+.|..+||.. +...+  +....+. .+....+..+++.||++||.+.-.
T Consensus        53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~--~~~~~i~-~~~C~~Cg~Cv~vCP~~a~~l~~~  111 (133)
T PRK09625         53 KPVHNNEICINCFNCWVYCPDAAILSRD--KKLKGVD-YSHCKGCGVCVEVCPTNPKSLLMF  111 (133)
T ss_pred             eEEEehhHCcChhhHHHhCCHhheEecC--CceEEeC-cCcCcChhHHHHHCCcCceEEEec
Confidence            4557889999999999999954 33333  3322232 233456778999999999765443

>PRK09898 hypothetical protein; Provisional

Probab=95.88  E-value=0.0048  Score=53.62  Aligned_cols=59  Identities=17%  Similarity=0.456  Sum_probs=42.5

Q ss_pred             ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~  219 (272)
                      .+.+|...|++|+.|...||.. ..++.+.+      ..+....+..+++.||++||.+++.++++
T Consensus       148 ~v~vd~~~CigC~~C~~aCP~~ai~~~~~~~------~~~kC~~Cg~Cv~~CP~~Ai~~~~~~~~~  207 (208)
T PRK09898        148 CITVDHKRCIGCSACTTACPWMMATVNTESK------KSSKCVLCGECANACPTGALKIIEWKDIT  207 (208)
T ss_pred             eEEeccccCCCcCcccccCCCCCCEecCCCC------cCCcCcChHHHHHhCCcccEEEecHHHcc
Confidence            4667889999999999999943 33433211      12234556799999999999998877653

>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed

Probab=95.85  E-value=0.0018  Score=50.30  Aligned_cols=56  Identities=20%  Similarity=0.422  Sum_probs=39.4

Q ss_pred             cccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ..+|...|++|+.|..+||. .+.++++ +.. +++ .+....+..+++.||.+||.+..
T Consensus        46 p~~d~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id-~~~C~~Cg~Cv~~CP~~AI~~~~  102 (105)
T PRK09624         46 PEFNRDKCVRCYLCYIYCPEPAIYLDEE-GYP-VFD-YDYCKGCGICANECPTKAIEMVR  102 (105)
T ss_pred             EEEChhHCcChhhHHhhCCHhhEEecCC-CcE-EEC-chhCCCcCchhhhcCcCcEEEec
Confidence            35688899999999999994 4656543 322 232 22334566899999999998764

>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]

Probab=95.82  E-value=0.002  Score=53.54  Aligned_cols=76  Identities=26%  Similarity=0.372  Sum_probs=45.8

Q ss_pred             ccccCCCCCCCCCCCCccccCcccccccCcccCCCC-cceeec--c-cccceEEccC---CCCHHHHHHHHHhCcccccc
Q 024126          139 SLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAP-EVFKIE--E-DFGRARVYNQ---CGINEFVQQAIESCPVDCIH  211 (272)
Q Consensus       139 ~~~~~~~~~~~~~~~~~v~vDe~~Cigcg~C~~~ap-~vF~~e--~-d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~  211 (272)
                      ......+-|.++-...+.-..+..||.|+.|..+|| +...++  . ..|..+..+=   .+-+.-+--+++.|||+||.
T Consensus        89 EKgplS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiv  168 (212)
T KOG3256|consen   89 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV  168 (212)
T ss_pred             ccCCCCcccccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCcccee
Confidence            334445555554455566678889999999999998 333333  2 1243332221   12223344788999999998


Q ss_pred             ccc
Q 024126          212 RTS  214 (272)
Q Consensus       212 ~~~  214 (272)
                      ...
T Consensus       169 egp  171 (212)
T KOG3256|consen  169 EGP  171 (212)
T ss_pred             ccC
Confidence            543

>PRK05113 electron transport complex protein RnfB; Provisional

Probab=95.81  E-value=0.0044  Score=53.30  Aligned_cols=60  Identities=25%  Similarity=0.561  Sum_probs=42.1

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~  216 (272)
                      ....+|...|++|+.|...|| +.+.+.++ +...+.  ......+..++..||++||.+.+..
T Consensus       107 ~~~~id~~~Ci~Cg~Cv~aCp~~ai~~~~~-~~~~v~--~~~C~~Cg~Cv~vCP~~AI~~~~~~  167 (191)
T PRK05113        107 KVAFIDEDNCIGCTKCIQACPVDAIVGATK-AMHTVI--SDLCTGCDLCVAPCPTDCIEMIPVA  167 (191)
T ss_pred             ceeEEeCCcCCCCChhhhhCCHhhhecccC-Cceeec--CCcCCchHHHHHHcCcCceEEeecc
Confidence            346779999999999999998 33333332 322222  2344567799999999999987654

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=95.78  E-value=0.0038  Score=59.84  Aligned_cols=61  Identities=23%  Similarity=0.390  Sum_probs=42.2

Q ss_pred             CccccCcccccccCcccCCCCc----ceeecccccc-eEEccCCCCHHHHHHHHHhCcc-cccccccch
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPE----VFKIEEDFGR-ARVYNQCGINEFVQQAIESCPV-DCIHRTSAQ  216 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~----vF~~e~d~g~-a~v~~q~g~~e~i~~Av~~CP~-~aI~~~~~~  216 (272)
                      ....+|+..|++|+.|...||.    .+.++++ |. ...+. ...+..+..++..||+ +||++....
T Consensus       335 ~~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~-~~~~~~i~-~~~C~~Cg~C~~~CP~~~Ai~~~~~~  401 (420)
T PRK08318        335 VYARIDQDKCIGCGRCYIACEDTSHQAIEWDED-GTRTPEVI-EEECVGCNLCAHVCPVEGCITMGEVK  401 (420)
T ss_pred             eEEEECHHHCCCCCcccccCCCcchhheeeccC-CCceEEec-hhhCcccchHHhhCCCCCCEEEeccC
Confidence            3456788999999999999995    4555443 22 22222 3334567789999999 999877653

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=95.77  E-value=0.011  Score=57.18  Aligned_cols=46  Identities=28%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHhCCCCCCCch---H----HHHHHHHHHHHHHHh
Q 024126           78 LLPDATPEQIKKAYYNCMKACHPDLSGDDP---E----TTNFCMFINEVYAVL  123 (272)
Q Consensus        78 v~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~----~~~~~~~i~~Ay~vL  123 (272)
                      +..=.+.++||++|||..+..||||.+..+   +    +++.|-.+++||+..
T Consensus       396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            334468999999999999999999987643   2    344445555555543

>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family

Probab=95.74  E-value=0.0067  Score=54.43  Aligned_cols=54  Identities=26%  Similarity=0.499  Sum_probs=37.0

Q ss_pred             CcccccccCcccCCCCcc--eeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126          159 DEFSCIGCKNCNNVAPEV--FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       159 De~~Cigcg~C~~~ap~v--F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      |+..|++|+.|..+||..  .......+....+ ..++...+.++++.||++||.+.
T Consensus       199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i-~~~~C~~Cg~Cv~~CP~~Ai~f~  254 (255)
T TIGR02163       199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLV-LSGDCTLCGRCIDVCHEDVLGFT  254 (255)
T ss_pred             ccccCeEcCCccCcCCCCceeeccccCCCceEe-ccccccchhHHHHhCCccccccc
Confidence            488999999999999953  2222110122122 24556788899999999999874

Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.

>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I

Probab=95.72  E-value=0.0024  Score=50.50  Aligned_cols=59  Identities=29%  Similarity=0.509  Sum_probs=38.6

Q ss_pred             ccccccCcccCCCC-cceeecccc---cce---EEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126          161 FSCIGCKNCNNVAP-EVFKIEEDF---GRA---RVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       161 ~~Cigcg~C~~~ap-~vF~~e~d~---g~a---~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~  219 (272)
                      ..|++|+.|..+|| ..+.+....   +..   ......+....+..++..||++||.+....+..
T Consensus        43 ~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~~~~~  108 (122)
T TIGR01971        43 EKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPEFELA  108 (122)
T ss_pred             CcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCccccccceeeec
Confidence            88999999999999 555554311   111   111113334456789999999999987765443

This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.

>TIGR00402 napF ferredoxin-type protein NapF

Probab=95.71  E-value=0.0026  Score=48.89  Aligned_cols=59  Identities=17%  Similarity=0.455  Sum_probs=39.4

Q ss_pred             cCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchh
Q 024126          158 VDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQ  217 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~  217 (272)
                      ++...|++|+.|...+|. .+.++.+ |...+....+.......++..||+++|.-.+..+
T Consensus        31 ~~~~~C~~C~~C~~~CP~~~i~~~~~-g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~~~~   90 (101)
T TIGR00402        31 LFSAVCTRCGECASACENNILQLGQQ-GQPTVEFDNAECDFCGKCAEACPTNAFHPRFPGD   90 (101)
T ss_pred             cCcCcCcChhHHHHHcCcccceeccC-CceeeEecCccCcCccChhhHCCccccCcCCCCC
Confidence            455689999999999995 3555432 4332222333445567899999999998655443

The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.

>PRK05888 NADH dehydrogenase subunit I; Provisional

Probab=95.68  E-value=0.0051  Score=51.45  Aligned_cols=62  Identities=31%  Similarity=0.462  Sum_probs=39.3

Q ss_pred             ccccCcc-----cccccCcccCCCCcc-eeecccc---cceE---EccCCCCHHHHHHHHHhCcccccccccch
Q 024126          155 HVFVDEF-----SCIGCKNCNNVAPEV-FKIEEDF---GRAR---VYNQCGINEFVQQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       155 ~v~vDe~-----~Cigcg~C~~~ap~v-F~~e~d~---g~a~---v~~q~g~~e~i~~Av~~CP~~aI~~~~~~  216 (272)
                      .+.++..     .|++|+.|..+||.. +.++...   |...   .....+....+..++..||++||.+....
T Consensus        47 ~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~  120 (164)
T PRK05888         47 RHALRRDPNGEERCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDF  120 (164)
T ss_pred             EEeecCCCCCCccCCcccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceecCcc
Confidence            3444555     899999999999943 4443211   2211   11123344566789999999999987654

>PRK09477 napH quinol dehydrogenase membrane component; Provisional

Probab=95.58  E-value=0.0073  Score=54.63  Aligned_cols=58  Identities=22%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             cCcccccccCcccCCCCcceeecc-cccc-eEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          158 VDEFSCIGCKNCNNVAPEVFKIEE-DFGR-ARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap~vF~~e~-d~g~-a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      +|+..|++|+.|...||..-.+++ ..+. .......++...+.++++.||++||.+..+
T Consensus       205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~r  264 (271)
T PRK09477        205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFTIR  264 (271)
T ss_pred             CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeeccc
Confidence            788999999999999995422220 0011 110112345667889999999999997643

>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family

Probab=95.55  E-value=0.004  Score=45.22  Aligned_cols=57  Identities=28%  Similarity=0.426  Sum_probs=38.6

Q ss_pred             cccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      +.++...|++|+.|..++|.. +.++++ +.. .+. .+.......++..||++||.+...
T Consensus        20 ~~i~~~~C~~C~~C~~~Cp~~ai~~~~~-~~~-~i~-~~~C~~C~~C~~~CP~~Ai~~~~~   77 (78)
T TIGR02179        20 PVVDKEKCIKCKNCWLYCPEGAIQEDEG-GFV-GID-YDYCKGCGICANVCPVKAIEMVRE   77 (78)
T ss_pred             EEEcCCcCcChhHHHhhcCccceEecCC-CcE-Eec-CccCcCccchhhhCCccccEeccC
Confidence            466788899999999999943 444332 322 222 223345578899999999987643

A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.

>CHL00014 ndhI NADH dehydrogenase subunit I

Probab=95.45  E-value=0.0054  Score=51.52  Aligned_cols=66  Identities=24%  Similarity=0.500  Sum_probs=42.3

Q ss_pred             CccccCcccccccCcccCCCCcc-eeecccc----cceE---EccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDF----GRAR---VYNQCGINEFVQQAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~----g~a~---v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~  219 (272)
                      ..+.++...|++|+.|..+||.. ..++.++    +...   .....+....+..+++.||++||.+....++.
T Consensus        52 g~i~~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~~~~  125 (167)
T CHL00014         52 GRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS  125 (167)
T ss_pred             CeEEeccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCCccccc
Confidence            44557788899999999999954 2221110    1111   11113445677889999999999987665444

>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit

Probab=95.28  E-value=0.0091  Score=50.06  Aligned_cols=57  Identities=25%  Similarity=0.475  Sum_probs=39.4

Q ss_pred             CccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      ....+|...|++|+.|...||. .+.++++ +. ..+. ......+..++..||++||.++
T Consensus       106 ~~~~id~~~Ci~Cg~C~~aCp~~ai~~~~~-~~-~~i~-~~~C~~Cg~Cv~~CP~~AI~~~  163 (165)
T TIGR01944       106 MVALIDEDNCIGCTKCIQACPVDAIVGAAK-AM-HTVI-ADECTGCDLCVEPCPTDCIEMI  163 (165)
T ss_pred             ceEEEECCcCCChhHHHHhCCccceEecCC-Cc-eEee-cccccChhHHHHhcCcCceEee
Confidence            3467889999999999999983 3333332 22 2222 2334457799999999999875

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.

>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=95.15  E-value=0.0053  Score=33.97  Aligned_cols=20  Identities=35%  Similarity=0.863  Sum_probs=17.0

Q ss_pred             ccccCcccccccCcccCCCC
Q 024126          155 HVFVDEFSCIGCKNCNNVAP  174 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap  174 (272)
                      .+++|..+|+||+.|...||
T Consensus         2 ~~~iD~~rCiGC~~C~~AC~   21 (22)
T PF12797_consen    2 GMVIDLERCIGCGACEVACP   21 (22)
T ss_pred             ceEEccccccCchhHHHhhC
Confidence            46789999999999987665

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein

Probab=95.08  E-value=0.011  Score=51.97  Aligned_cols=64  Identities=23%  Similarity=0.364  Sum_probs=38.4

Q ss_pred             ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHH----HHHHHHhCcccccccccchhh
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEF----VQQAIESCPVDCIHRTSAQQL  218 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~----i~~Av~~CP~~aI~~~~~~~l  218 (272)
                      .+.+|...|++|+.|...||.. -.++...+....-.--++...    .=.+++.||++||.+.+.+++
T Consensus       119 ~v~id~~~C~~C~~C~~aCP~~A~~~~~~~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~~~  187 (225)
T TIGR03149       119 IVDVHKDLCVGCQYCIAACPYRVRFIHPVTKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLNDP  187 (225)
T ss_pred             eEEechhhCCcchHHHHhCCCCCcEecCCCCccccCCCCCcchhhCCCCCcccccCccCCEEEeccccc
Confidence            4567888999999999999943 222322121110011221000    016899999999999887653

Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.

>PRK14993 tetrathionate reductase subunit B; Provisional

Probab=95.07  E-value=0.0086  Score=53.43  Aligned_cols=64  Identities=22%  Similarity=0.373  Sum_probs=41.1

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhhh
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~  219 (272)
                      ..+.+|...|+||+.|...|| +...++++.+....-.-.+  +.+.     .++..||++||.+.+..+..
T Consensus       123 G~v~id~~~CigC~~Cv~aCP~~Ai~~~~~~~~~~KC~~C~--~r~~~G~~PaCv~~CP~~Al~~g~~~~~~  192 (244)
T PRK14993        123 GIVVVDNKRCVGCAYCVQACPYDARFINHETQTADKCTFCV--HRLEAGLLPACVESCVGGARIIGDIKDPH  192 (244)
T ss_pred             CCEEEcHHHCCCHHHHHHhcCCCCCEEeCCCCCcccCcCCc--chhhCCCCcccchhcccCCEEEcccccch
Confidence            346789999999999999999 4555554322111000011  1111     58899999999988776543

>COG1145 NapF Ferredoxin [Energy production and conversion]

Probab=94.85  E-value=0.013  Score=43.88  Aligned_cols=60  Identities=23%  Similarity=0.430  Sum_probs=38.4

Q ss_pred             ccCcccccccCcccCCCCcc-eeeccccc-ceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126          157 FVDEFSCIGCKNCNNVAPEV-FKIEEDFG-RARVYNQCGINEFVQQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       157 ~vDe~~Cigcg~C~~~ap~v-F~~e~d~g-~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~  216 (272)
                      .++...|++||.|..+||.. ..+..+.. .............+...+..||++||.+....
T Consensus        25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~   86 (99)
T COG1145          25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAEEL   86 (99)
T ss_pred             EeCccccCCCCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhhcc
Confidence            56777899999999999954 33332210 01111113334566688899999998876553

>PRK10882 hydrogenase 2 protein HybA; Provisional

Probab=94.70  E-value=0.0091  Score=55.53  Aligned_cols=66  Identities=24%  Similarity=0.452  Sum_probs=39.7

Q ss_pred             CccccCcccccccCcccCCCCcc-eeeccc--ccceEEccCCCC--HHHHH-----HHHHhCcccccccccchhhh
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEED--FGRARVYNQCGI--NEFVQ-----QAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~v-F~~e~d--~g~a~v~~q~g~--~e~i~-----~Av~~CP~~aI~~~~~~~l~  219 (272)
                      ..+.+|...|++|+.|...||.. ..++.+  .+....-.-.++  .+.+.     .++..||++||.+.+.+++-
T Consensus       136 g~V~id~dkCigCg~Cv~aCP~gai~~~~~~~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el~  211 (328)
T PRK10882        136 GIVHYDKDVCTGCRYCMVACPFNVPKYDYNNPFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREELL  211 (328)
T ss_pred             CcccCCHHHcCcccHHHHhCCccceeccccccccceeecccccccchhhhhcCCCChhhhhccccceEeccHHHHH
Confidence            45677889999999999999933 333321  111111111111  01111     29999999999988876543

>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit

Probab=94.69  E-value=0.018  Score=47.84  Aligned_cols=62  Identities=24%  Similarity=0.495  Sum_probs=36.8

Q ss_pred             ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhh
Q 024126          155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQL  218 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l  218 (272)
                      .+.+|...|++|+.|...+|. .+.++.+.+.+..-  .+=.+.+.     .++..||++||.+.+.+++
T Consensus        89 ~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~~~~~kC--~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~~~~  156 (161)
T TIGR02951        89 LVLVDQDKCIGCRYCVWACPYGAPQYDPQQGVMGKC--DGCYDRVEKGLRPACVDACPMRALDFGPIDEL  156 (161)
T ss_pred             cEEECHHhCCCchHHHhhCCCCCcEEcCCCCccccC--CCCHHHHHCCCCCcchhhccccceEEecHHHH
Confidence            345677788888888888883 45555432221110  11112222     5888888888888776654

This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.

>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional

Probab=94.60  E-value=0.01  Score=50.27  Aligned_cols=69  Identities=20%  Similarity=0.359  Sum_probs=42.0

Q ss_pred             ccccCcccccccCcccCCCCcc-eeeccccc--c---eE-EccCC---CCHHHHH------HHHHhCcccccccccchhh
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFG--R---AR-VYNQC---GINEFVQ------QAIESCPVDCIHRTSAQQL  218 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g--~---a~-v~~q~---g~~e~i~------~Av~~CP~~aI~~~~~~~l  218 (272)
                      .+.+|+..|++|+.|...||.. ..+..+..  .   .. .....   ...+...      .++..||++||.+++..++
T Consensus        81 ~v~i~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~~~~  160 (181)
T PRK10330         81 FVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL  160 (181)
T ss_pred             eEEeChhhCCCcchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCHHHH
Confidence            3567888999999999999833 33332100  0   00 00000   0111222      6899999999999998877


Q ss_pred             hhHHH
Q 024126          219 SLLED  223 (272)
Q Consensus       219 ~~le~  223 (272)
                      ..++.
T Consensus       161 ~~~~~  165 (181)
T PRK10330        161 EQLSA  165 (181)
T ss_pred             HHHHH
Confidence            66553

>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only

Probab=94.57  E-value=0.011  Score=55.99  Aligned_cols=58  Identities=24%  Similarity=0.334  Sum_probs=38.2

Q ss_pred             cccCcccccccCcccCCCCcceee-----cccccceEEc------cCCCCHHHHHHHHHhCcccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAPEVFKI-----EEDFGRARVY------NQCGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~vF~~-----e~d~g~a~v~------~q~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      +.+|...|++|+.|..+||.....     .++.+...+.      ........+..++..||++||.+.
T Consensus         2 i~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~   70 (374)
T TIGR02512         2 IVRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK   70 (374)
T ss_pred             EEechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence            457888999999999999955322     1211122111      112334456789999999999876

This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=94.52  E-value=0.018  Score=55.12  Aligned_cols=54  Identities=19%  Similarity=0.465  Sum_probs=38.4

Q ss_pred             ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR  212 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~  212 (272)
                      .+.+|...|++|+.|...||.. +..++  . ..++. ...+..+..++..||++||..
T Consensus         4 ~~~id~~~Ci~C~~C~~~CP~~ai~~~~--~-~~~i~-~~~C~~C~~C~~~CP~~AI~~   58 (411)
T TIGR03224         4 QHLIDPEICIRCNTCEETCPIDAITHDD--R-NYVVK-ADVCNGCMACVSPCPTGAIDN   58 (411)
T ss_pred             eeeeCcccCcCccchhhhCCcccEeccC--C-ceEeC-cccCcCHHHHHhhcCccccee
Confidence            4567888999999999999943 33332  2 22232 334557889999999999984

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>PRK08493 NADH dehydrogenase subunit G; Validated

Probab=94.50  E-value=0.0092  Score=61.77  Aligned_cols=62  Identities=19%  Similarity=0.266  Sum_probs=40.1

Q ss_pred             CccccCcccccccCcccCCCCccee-----ecccccceE-----------------------EccC---CCCHHHHHHHH
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEVFK-----IEEDFGRAR-----------------------VYNQ---CGINEFVQQAI  202 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~vF~-----~e~d~g~a~-----------------------v~~q---~g~~e~i~~Av  202 (272)
                      ..+..|...||.|+.|+.+|+++-.     +......+.                       +...   ..++..+-+++
T Consensus       134 ~~I~~D~~rCI~C~RCVr~C~ev~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv  213 (819)
T PRK08493        134 GKINYDPSLCIVCERCVTVCKDKIGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECI  213 (819)
T ss_pred             CcEEechhhcccccHHHhhCcccccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccCcHH
Confidence            3577899999999999999987522     111101110                       1011   23445667999


Q ss_pred             HhCcccccccccc
Q 024126          203 ESCPVDCIHRTSA  215 (272)
Q Consensus       203 ~~CP~~aI~~~~~  215 (272)
                      +.|||+||...+.
T Consensus       214 ~VCPvGAL~~k~~  226 (819)
T PRK08493        214 AVCPVGALSSSDF  226 (819)
T ss_pred             HhCCCCccccCcc
Confidence            9999999987653

>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A

Probab=94.48  E-value=0.0097  Score=39.68  Aligned_cols=49  Identities=27%  Similarity=0.534  Sum_probs=17.9

Q ss_pred             cccCcccccccCcccCCCCc-c-eeecccccceEEccCCCCHHHHHHHHHhCc
Q 024126          156 VFVDEFSCIGCKNCNNVAPE-V-FKIEEDFGRARVYNQCGINEFVQQAIESCP  206 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~-v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP  206 (272)
                      +.+|...|++|+.|..++|. . ..+... +....+ ...+-......+..||
T Consensus         2 i~id~~~C~~C~~C~~~CP~~~~~~~~~~-~~~~~~-~~~~C~~Cg~C~~~CP   52 (52)
T PF13237_consen    2 IVIDEDKCIGCGRCVKVCPADNAIAIDDG-EKKVEI-DPERCIGCGACVEVCP   52 (52)
T ss_dssp             ----TT------TTGGG-TT-----EEE--SSSEEE--TTT--TTSHHHHH-T
T ss_pred             CccCcccCcCCcChHHHccchhHHHhhcc-CCCeEe-CcccccccChhhhhCc
Confidence            56789999999999999998 1 112221 222222 2334444557777777

>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=94.40  E-value=0.0064  Score=34.45  Aligned_cols=20  Identities=50%  Similarity=1.095  Sum_probs=17.5

Q ss_pred             cccCcccccccCcccCCCCc
Q 024126          156 VFVDEFSCIGCKNCNNVAPE  175 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~  175 (272)
                      +.+|+..|+|||.|..++|.
T Consensus         2 ~~id~~~C~~Cg~C~~~Cp~   21 (24)
T PF12837_consen    2 VVIDPDKCIGCGDCVRVCPE   21 (24)
T ss_pred             cEEChhhCcChhHHHHhcch
Confidence            46789999999999999984

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]

Probab=94.40  E-value=0.03  Score=56.71  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHhCCC------CCCCchHHHHHHHHHHHHHHHhcCccccchhccccccccccCCCCCCCCCCCCccc
Q 024126           84 PEQIKKAYYNCMKACHPD------LSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVF  157 (272)
Q Consensus        84 ~~~Ik~ayr~l~~~~HPD------~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~~~~~~~~~~~~~~~~~~v~  157 (272)
                      .+++++---.+.+..||=      .+.++       =.|.++-..|+=..+|--|+.-        +++...........
T Consensus        81 vk~~r~~~md~~l~nH~LyC~vCd~nnGd-------Celh~~~~~~gl~~q~y~y~~k--------~~~~~~Des~Pfy~  145 (978)
T COG3383          81 VKEARREAMDRILSNHPLYCTVCDNNNGD-------CELHNMVMALGLTEQRYPYEEK--------NPPYPKDESNPFYI  145 (978)
T ss_pred             HHHHHHHHHHHHHhcCCcCccccCCCCCC-------chHHHHHHHhCCCccccCcccc--------CCCCCcccCCCeEE
Confidence            345555555667778983      23221       1344444555555555556542        12221111112234


Q ss_pred             cCcccccccCcccCCCCcc---eee--cccccceEEccC------CCCHHHHHHHHHhCcccccc
Q 024126          158 VDEFSCIGCKNCNNVAPEV---FKI--EEDFGRARVYNQ------CGINEFVQQAIESCPVDCIH  211 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap~v---F~~--e~d~g~a~v~~q------~g~~e~i~~Av~~CP~~aI~  211 (272)
                      .|...||-||.|+..|-++   |.+  +.+--..+|+-.      ..++..+-.++..||++|+-
T Consensus       146 ydp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALm  210 (978)
T COG3383         146 YDPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALM  210 (978)
T ss_pred             ecchheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhh
Confidence            6888899999999998654   443  332234555543      23445677999999999975

>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family

Probab=94.39  E-value=0.0098  Score=52.66  Aligned_cols=56  Identities=23%  Similarity=0.466  Sum_probs=40.3

Q ss_pred             cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      +.+|...|++|+.|..+|| +.+.+++  +.. .++ ......+..++..||++||.....
T Consensus       143 ~~id~~~C~~C~~C~~~CP~~ai~~~~--~~~-~i~-~~~C~~Cg~C~~~CP~~AI~~~~~  199 (234)
T TIGR02700       143 YMIDRKRCKGCGICVDACPRSAIDMVD--GKA-FIR-LLKCVGCGKCKEACPYNAIHGGLE  199 (234)
T ss_pred             eEEChhHCcCcchHHHhCCcccEEecC--Cce-EEc-hhhCCccchHHhhCCCCceecCCc
Confidence            4678889999999999999 4566554  332 221 223345678999999999997643

This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional

Probab=94.05  E-value=0.057  Score=49.23  Aligned_cols=71  Identities=17%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             ccccCcccccccCcccCCCCcc-----eeecccccceEEccCCCCH----HHHHHHHHhCcccccccccchhhhhHHHHH
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCGIN----EFVQQAIESCPVDCIHRTSAQQLSLLEDEM  225 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q~g~~----e~i~~Av~~CP~~aI~~~~~~~l~~le~~~  225 (272)
                      .+.+|..+||-|+.|+.+|.++     +.+...-...++....+..    ....++++.|||+||...+.++-+++...+
T Consensus       206 ~i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~~~~~~~~~~  285 (297)
T PTZ00305        206 QTRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDADENNAIAREL  285 (297)
T ss_pred             ceeecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCCcccchHHHHHh
Confidence            3557889999999999998654     3333331223333322211    123458999999999988887766655443

>PRK08764 ferredoxin; Provisional

Probab=93.98  E-value=0.021  Score=46.32  Aligned_cols=53  Identities=25%  Similarity=0.518  Sum_probs=34.3

Q ss_pred             ccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126          157 FVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR  212 (272)
Q Consensus       157 ~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~  212 (272)
                      ++++..|++|+.|..++|. .+.++++ +... +. .........++..||++||.+
T Consensus        81 ~~~~~~Ci~C~~Cv~aCp~~ai~~~~~-~~~~-v~-~~~C~~Cg~Cv~~CP~~Ai~~  134 (135)
T PRK08764         81 WIVEADCIGCTKCIQACPVDAIVGGAK-HMHT-VI-APLCTGCELCVPACPVDCIEL  134 (135)
T ss_pred             EECcccCcCcchHHHhCChhhcCccCC-Ccee-ec-CCcCcCccchhhhcCccceEe
Confidence            3456789999999999983 2333222 2222 21 223345668999999999975

>cd07030 RNAP_D D subunit of Archaeal RNA polymerase

Probab=93.81  E-value=0.067  Score=48.01  Aligned_cols=87  Identities=17%  Similarity=0.303  Sum_probs=57.8

Q ss_pred             ccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhhhceeeecCC
Q 024126          161 FSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSG  239 (272)
Q Consensus       161 ~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~~~v~~~~~g  239 (272)
                      ..|++|+.|...|| .+|.+++  +...+.+ ......+.+++..||.+||.+...++--              .+.+-+
T Consensus       169 ~~C~~C~~C~~~CP~~vi~~d~--~~~~v~~-~~~C~~C~~C~~~Cp~~AI~~~~~~~~~--------------if~vEs  231 (259)
T cd07030         169 EDCDGCGKCVEECPRGVLELEE--GKVVVED-LEDCSLCKLCERACDAGAIRVGWDEDRF--------------IFEVES  231 (259)
T ss_pred             hhCCChHHHHHhCCccceEccC--CeeEEeC-hhhCcCchHHHHhCCCCcEEEEecCCEE--------------EEEEeC
Confidence            67999999999998 6687765  3333332 2344566789999999999976543211              122333


Q ss_pred             CCC-CcchhHHHHHHHHHhHHHHHHH
Q 024126          240 MGS-GSADVFRMASSRWERRQAKVLV  264 (272)
Q Consensus       240 ~g~-~~~~~f~~~~~~~~~~~~~~~~  264 (272)
                      -|+ ...+.|-.|...++++-.++.+
T Consensus       232 ~Gsl~p~~il~~A~~~l~~k~~~~~~  257 (259)
T cd07030         232 DGSLPPKEILLEALRILKEKADELIE  257 (259)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            354 3488998888877777655544

The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.72  E-value=0.018  Score=58.24  Aligned_cols=67  Identities=25%  Similarity=0.491  Sum_probs=42.5

Q ss_pred             ccccCcccccccCcccCCCC-cceeeccccc-ceEEccCCCCHHHHH------HHHHhCcccccccccchhhhhH
Q 024126          155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFG-RARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQQLSLL  221 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g-~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~~~l~~l  221 (272)
                      .+.+|...|++|+.|...|| ..+.+..+.. .............+.      .++..||++||.+.+..++...
T Consensus        79 ~~~id~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~~~~  153 (654)
T PRK12769         79 SIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQALSGM  153 (654)
T ss_pred             eEEEecccccCcChhcccCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHHHHH
Confidence            45678899999999999999 4455543211 000001112223333      6889999999999987766443

>PRK06273 ferredoxin; Provisional

Probab=93.72  E-value=0.011  Score=49.65  Aligned_cols=56  Identities=25%  Similarity=0.376  Sum_probs=35.3

Q ss_pred             cccCcccccccCcccCCCCc-ceeecccc------cc----eEEccCCCCHHHHHHHHHhCccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDF------GR----ARVYNQCGINEFVQQAIESCPVDCIHR  212 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~-vF~~e~d~------g~----a~v~~q~g~~e~i~~Av~~CP~~aI~~  212 (272)
                      ..+++..|++|+.|..+||. ...++.+.      +.    ...++ ......+..+++.||++||..
T Consensus        44 ~~id~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id-~~kCi~Cg~C~~aCP~~AI~~  110 (165)
T PRK06273         44 KKVFEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKID-YEKCVYCLYCHDFCPVFALFN  110 (165)
T ss_pred             CeECchhCcChhHHHHhcCccceeeecccccchhcccccccceecc-cccCcCCCCcchhCCHhheec
Confidence            45688889999999999994 34444210      00    01111 223334568999999999843

>PRK10194 ferredoxin-type protein; Provisional

Probab=93.65  E-value=0.017  Score=48.11  Aligned_cols=55  Identities=16%  Similarity=0.283  Sum_probs=34.3

Q ss_pred             CcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          159 DEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       159 De~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      +...|++|+.|...+|.. ..+++. |...+.-..+........++.||+++|....
T Consensus        32 ~~~~C~~Cg~C~~aCp~~~i~~~~~-~~~~~~~~~~~C~~C~~C~~~CP~~ai~~~~   87 (163)
T PRK10194         32 FLTHCTRCDACINACENNILQRGAG-GYPSVNFKNNECSFCYACAQACPESLFSPRH   87 (163)
T ss_pred             HhhhCcChhHHHHHcChhhcccCCC-CceeeeecCCCCCCchhhHhhCcchheeccc
Confidence            345799999999999854 334332 3222222233344567888999999887654

>PRK09129 NADH dehydrogenase subunit G; Validated

Probab=93.64  E-value=0.035  Score=57.36  Aligned_cols=61  Identities=16%  Similarity=0.343  Sum_probs=41.1

Q ss_pred             CccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ..+..|..+||.|+.|+.+|-++     +.+.......++...   .-+.+.+-++++.|||+||.-..
T Consensus       137 p~i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~  205 (776)
T PRK09129        137 PLISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKP  205 (776)
T ss_pred             cceeecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCcccccccc
Confidence            45677999999999999888544     444333223333322   12345678999999999998554

>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein

Probab=93.59  E-value=0.0072  Score=53.23  Aligned_cols=62  Identities=24%  Similarity=0.555  Sum_probs=38.4

Q ss_pred             CCccccCcccccccCcccCCCCcceeecccccceEEccC--CC---------CHH---HHH--HHHHhCccccccccc
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--CG---------INE---FVQ--QAIESCPVDCIHRTS  214 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q--~g---------~~e---~i~--~Av~~CP~~aI~~~~  214 (272)
                      ...+++|...|+||+.|...||..+.+.+......+...  .+         ...   .+.  .++..||++||....
T Consensus        38 ~~~~~iD~~rCigC~~C~~aC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~  115 (225)
T TIGR03149        38 RYGMVHDETACIGCTACMDACREVNKVPEGVSRLEIIRSEPYGEFPDVEYRFFRKSCQHCDNAPCVAVCPTGASFKDE  115 (225)
T ss_pred             eEEEEEEHHHCcCcHHHHHHhhHHhCCCCCCceEEEEEecccCCCCCceeEECchhccCCcCcChHhhCCCCcEEEeC
Confidence            455788999999999999999976554432122222110  00         111   122  388999999998643

Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.

>PRK08166 NADH dehydrogenase subunit G; Validated

Probab=93.54  E-value=0.1  Score=54.56  Aligned_cols=61  Identities=15%  Similarity=0.281  Sum_probs=40.1

Q ss_pred             CccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ..+..|...||.|+.|+.+|-++     +.+.....+..+-..   .-+.+.+-++++.|||+||.-..
T Consensus       142 ~~i~~d~~rCi~C~rCVr~c~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~  210 (847)
T PRK08166        142 PFISHEMNRCIACYRCVRYYKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKT  210 (847)
T ss_pred             CceEecCCcCccccHHHHHHHhhcCcceEEEeecCceeEecCCCCCcccChhhCChHhhCCchhccccc
Confidence            34678999999999999988644     333322122222211   22345778999999999988554

>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG

Probab=93.34  E-value=0.074  Score=51.37  Aligned_cols=46  Identities=22%  Similarity=0.367  Sum_probs=33.0

Q ss_pred             cccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          160 EFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       160 e~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      +..|++|+.|..+||....+++  +.      ..++..+..+++.||. ++....
T Consensus       230 ~~~Ci~C~~Cv~vCP~gi~~~~--~~------~~~Ci~Cg~CidaCp~-a~~~~g  275 (434)
T TIGR02745       230 LGDCIDCNLCVQVCPTGIDIRD--GL------QLECINCGLCIDACDD-VMEKMG  275 (434)
T ss_pred             CCCCCChhhhHHhCCCCCEeCC--CC------chhChhhhHHHHhCCC-hHHhcC
Confidence            5679999999999997644433  21      2356678899999997 554433

Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G

Probab=93.23  E-value=0.069  Score=53.63  Aligned_cols=60  Identities=20%  Similarity=0.356  Sum_probs=41.2

Q ss_pred             ccccCcccccccCcccCCCCc-----ceeecccccceEEccCCC---CHHHHHHHHHhCccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~-----vF~~e~d~g~a~v~~q~g---~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      .+..|..+||.|+.|+.+|-+     .+.+...-...++....+   +.+.+-++++.|||+||.-..
T Consensus       136 ~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~  203 (603)
T TIGR01973       136 LIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKP  203 (603)
T ss_pred             CeEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCcccccccc
Confidence            567899999999999888854     344444423344433222   335677999999999988544

This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.

>PRK07860 NADH dehydrogenase subunit G; Validated

Probab=92.83  E-value=0.14  Score=53.25  Aligned_cols=60  Identities=18%  Similarity=0.394  Sum_probs=39.2

Q ss_pred             ccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      .+..|..+||-|+.|+.+|-++     +.+...-....+...   .-+.+.+-++++.|||+||.-..
T Consensus       144 ~i~~d~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~k~  211 (797)
T PRK07860        144 QVLLDRERCVLCARCTRFSDQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAA  211 (797)
T ss_pred             ceeecccccccCcHHHHHHHhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCcccccccc
Confidence            4678999999999999888654     333333122333322   11224567999999999997443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.52  E-value=0.049  Score=55.07  Aligned_cols=66  Identities=29%  Similarity=0.555  Sum_probs=42.2

Q ss_pred             ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCC-HHHHHHHHHhCcccccccccchhhhhHH
Q 024126          155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGI-NEFVQQAIESCPVDCIHRTSAQQLSLLE  222 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~-~e~i~~Av~~CP~~aI~~~~~~~l~~le  222 (272)
                      .+.+|...|++|+.|...||. .+.+.++  ........++ ......++..||++||.+.+..++....
T Consensus        79 ~v~~d~~~C~gC~~C~~~CP~~ai~~~~~--~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~~~  146 (639)
T PRK12809         79 SVQLDEQKCIGCKRCAIACPFGVVEMVDT--IAQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIK  146 (639)
T ss_pred             ceecChhhCcchhhHhhhcCCCCEEccCC--CcccccCCcccCCCCChhhhhCccceEEEechHHHHHHH
Confidence            356788999999999999993 4444432  1111111111 1112478999999999998876665443

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=92.13  E-value=0.015  Score=38.81  Aligned_cols=48  Identities=23%  Similarity=0.591  Sum_probs=21.7

Q ss_pred             cccccCcccCCCC-cceeecccc---cceEEccCCCCHHHHHHHHHhCcccc
Q 024126          162 SCIGCKNCNNVAP-EVFKIEEDF---GRARVYNQCGINEFVQQAIESCPVDC  209 (272)
Q Consensus       162 ~Cigcg~C~~~ap-~vF~~e~d~---g~a~v~~q~g~~e~i~~Av~~CP~~a  209 (272)
                      +|+||+.|..++| +.+.+.+..   +...+......-......+..||++|
T Consensus         1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A   52 (52)
T PF12838_consen    1 KCIGCGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA   52 (52)
T ss_dssp             C-SS--HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred             CCCCcCchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence            4899999999998 445554321   11111111223345557888999875

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.

>TIGR01660 narH nitrate reductase, beta subunit

Probab=91.97  E-value=0.12  Score=49.84  Aligned_cols=59  Identities=19%  Similarity=0.188  Sum_probs=33.8

Q ss_pred             CccccCcccccccC--cccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          154 DHVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       154 ~~v~vDe~~Cigcg--~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ..+......|++|+  .|..+||.. ...+++.|... +++ ..+..+..++.+||.+||.+..
T Consensus       174 ~~m~y~p~~C~HC~nP~CV~ACPtGAI~k~eedGiV~-ID~-dkCiGCg~CV~ACPygAI~~n~  235 (492)
T TIGR01660       174 TFMMYLPRLCEHCLNPACVASCPSGAIYKREEDGIVL-IDQ-DKCRGWRMCISGCPYKKIYFNW  235 (492)
T ss_pred             ceEEECCCcCcCCCcccchhhCccCCeEEecCCCeEE-Eeh-hhccChHHHHHhCCCCCcEecC
Confidence            34455667788887  788888743 22232224322 222 2223456788888888887654

The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.

>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit

Probab=91.95  E-value=0.026  Score=51.99  Aligned_cols=63  Identities=16%  Similarity=0.279  Sum_probs=38.9

Q ss_pred             ccccCcccccccCcccCCCCc-ceeecccccceEEccCCC---CHHHHHHHHHhCcccccccccchh
Q 024126          155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRTSAQQ  217 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g---~~e~i~~Av~~CP~~aI~~~~~~~  217 (272)
                      .+.+|...|+||+.|...||. ...++.+.+.+..-.-..   +....-.++.+||++||.+.+.++
T Consensus       156 iV~ID~ekCiGCg~Cv~ACPygAi~~n~~~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGdldd  222 (321)
T TIGR03478       156 IVLVDQERCKGYRYCVEACPYKKVYFNPQSQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGYLDD  222 (321)
T ss_pred             eEEECHHHCcchHHHHHhCCCCCcEecCCCCchhhCCCchhhhccCCCCHHHhhcCcccEEEEeCCC
Confidence            456899999999999999993 344443323221111110   001123789999999999866654

This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.

>PRK07118 ferredoxin; Validated

Probab=91.91  E-value=0.062  Score=48.95  Aligned_cols=61  Identities=23%  Similarity=0.354  Sum_probs=41.8

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEcc---CC---------CCHHHHHHHHHhCccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYN---QC---------GINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~---q~---------g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ..+.+|...|++|+.|...|| +.+.+.+......+.-   ..         .....+...+..||++||.+.+
T Consensus       161 g~~~id~~~C~~Cg~Cv~aCP~~ai~~~~~~~~v~v~c~~~~~g~~~~~~~~~~Ci~Cg~Cv~~CP~~AI~~~~  234 (280)
T PRK07118        161 GLPVVDEDKCTGCGACVKACPRNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMEN  234 (280)
T ss_pred             CeEEEChhhCcChhHHHHhcCccceeeeccccceeeeeeccccccccccccccccccchHHHhhCCcCcEEEeC
Confidence            456789999999999999999 6777775433333221   11         1123456789999999999854

>PRK07118 ferredoxin; Validated

Probab=91.67  E-value=0.1  Score=47.50  Aligned_cols=56  Identities=25%  Similarity=0.484  Sum_probs=40.2

Q ss_pred             cCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchh
Q 024126          158 VDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQ  217 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~  217 (272)
                      ++...|++|+.|..+|| +.+.+++  +.+.+-  .........+++.||++||.+.....
T Consensus       210 ~~~~~Ci~Cg~Cv~~CP~~AI~~~~--~~~vId--~~~C~~Cg~C~~~CP~~AI~~~~~~~  266 (280)
T PRK07118        210 VCEVGCIGCGKCVKACPAGAITMEN--NLAVID--QEKCTSCGKCVEKCPTKAIRILNKPP  266 (280)
T ss_pred             ccccccccchHHHhhCCcCcEEEeC--CcEEEc--CCcCCCHHHHHHhCCccccEeecccc
Confidence            34677999999999999 5677765  344332  22223456899999999999876643

>TIGR02912 sulfite_red_C sulfite reductase, subunit C

Probab=91.47  E-value=0.068  Score=49.30  Aligned_cols=56  Identities=21%  Similarity=0.367  Sum_probs=39.4

Q ss_pred             ccccCcccccccCcccCCCCc----ceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~----vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ...+|...|++|+.|...||.    .+.+++  +. ..+ .......+..++..||++||....
T Consensus       163 ~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~--~~-~~i-d~~~C~~Cg~Cv~~CP~~Al~~~~  222 (314)
T TIGR02912       163 EPQYDADRCIGCGACVKVCKKKAVGALSFEN--YK-VVR-DHSKCIGCGECVLKCPTGAWTRSE  222 (314)
T ss_pred             CCceeCccCCcchHHHHhcChhhcCceeccC--Ce-EEe-CCCcCcCcchhhhhCCHhhcccCc
Confidence            345788899999999999995    233332  32 222 233456778999999999997654

Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.

>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=91.30  E-value=0.028  Score=31.66  Aligned_cols=19  Identities=37%  Similarity=0.882  Sum_probs=15.1

Q ss_pred             ccCcccccccCcccCCCCc
Q 024126          157 FVDEFSCIGCKNCNNVAPE  175 (272)
Q Consensus       157 ~vDe~~Cigcg~C~~~ap~  175 (272)
                      .+|...|++||.|...+|.
T Consensus         2 ~id~~~C~~Cg~C~~~CP~   20 (24)
T PF00037_consen    2 VIDPDKCIGCGRCVEACPF   20 (24)
T ss_dssp             EEETTTSSS-THHHHHSTT
T ss_pred             EEchHHCCCcchhhhhccc
Confidence            4678889999999988884

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....

>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional

Probab=91.27  E-value=0.045  Score=49.15  Aligned_cols=54  Identities=20%  Similarity=0.450  Sum_probs=34.1

Q ss_pred             ccccccCcccCCCC-cceeeccc-----ccceEEccCCCCHHHHH--HHHHhCccccccccc
Q 024126          161 FSCIGCKNCNNVAP-EVFKIEED-----FGRARVYNQCGINEFVQ--QAIESCPVDCIHRTS  214 (272)
Q Consensus       161 ~~Cigcg~C~~~ap-~vF~~e~d-----~g~a~v~~q~g~~e~i~--~Av~~CP~~aI~~~~  214 (272)
                      ..|++|+.|...|| ++..+...     .|...+.........+.  .++..||++||.+..
T Consensus        59 ~~Ci~Cg~Cv~aCP~~aI~~~~~~~~~~~g~p~~~~~~~~C~~C~~~~Cv~aCPtgAL~~~~  120 (254)
T PRK09476         59 SACIRCGLCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCVKACPSGALDREL  120 (254)
T ss_pred             hhCcCchHHHHhCCccccCccccccccccCCceeeecCCcCcCCCCCchhhccCccceEeec
Confidence            67999999999998 55554321     12222222222344444  489999999998743

>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]

Probab=91.27  E-value=0.035  Score=47.04  Aligned_cols=62  Identities=23%  Similarity=0.485  Sum_probs=38.0

Q ss_pred             CCccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~  216 (272)
                      ..-.++|+..|+||..|.+.||---.+-...+.-.|+..  ..--+..++..|||+||++....
T Consensus       107 ~~va~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~~d--lCTGC~lCva~CPtdci~m~~~~  168 (198)
T COG2878         107 RMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIAD--LCTGCDLCVAPCPTDCIEMQPVA  168 (198)
T ss_pred             ceeeEecchhccccHHHHHhCChhhhhccchhHHHHHHH--HhcCCCcccCCCCCCceeeeecc
Confidence            445678999999999999999843333211011111111  01113467899999999987654

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=90.86  E-value=0.15  Score=51.28  Aligned_cols=51  Identities=31%  Similarity=0.559  Sum_probs=37.0

Q ss_pred             CccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHHhCccccc
Q 024126          154 DHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCI  210 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~--~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI  210 (272)
                      ..+.+|...|++|+.|..  .||. +..++  +.. .++.  .+..+-.+++.||++||
T Consensus       543 ~~~~id~~~C~~C~~C~~~~~CP~-~~~~~--~~~-~i~~--~C~~Cg~C~~~CP~~Ai  595 (595)
T TIGR03336       543 GPYKVDQDKCIGCKKCIKELGCPA-IEPED--KEA-VIDP--LCTGCGVCAQICPFDAI  595 (595)
T ss_pred             ceEEEcCCcCCCccccccccCCCC-ccccC--Ccc-eeCC--CCcCHHHHHhhCccccC
Confidence            467889999999999999  8983 22322  332 2332  46677899999999987

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=90.51  E-value=0.12  Score=55.87  Aligned_cols=61  Identities=18%  Similarity=0.292  Sum_probs=39.5

Q ss_pred             cccCcccccccCcccCCCCcc-eeec---cc-------------------ccce-EEccCCCCHHHHHHHHHhCccc--c
Q 024126          156 VFVDEFSCIGCKNCNNVAPEV-FKIE---ED-------------------FGRA-RVYNQCGINEFVQQAIESCPVD--C  209 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~v-F~~e---~d-------------------~g~a-~v~~q~g~~e~i~~Av~~CP~~--a  209 (272)
                      +..|...|++|+.|..+||.. +.+.   ++                   .+.. .+.....++..|..+++.||++  |
T Consensus       678 p~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~A  757 (1165)
T TIGR02176       678 PVWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKA  757 (1165)
T ss_pred             ceeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCcc
Confidence            445888899999999999833 2221   00                   0000 1111244566788999999994  9


Q ss_pred             cccccch
Q 024126          210 IHRTSAQ  216 (272)
Q Consensus       210 I~~~~~~  216 (272)
                      |.++...
T Consensus       758 l~m~~~~  764 (1165)
T TIGR02176       758 LVMQPLA  764 (1165)
T ss_pred             ccccchh
Confidence            9987665

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>PRK13795 hypothetical protein; Provisional

Probab=90.27  E-value=0.091  Score=53.20  Aligned_cols=55  Identities=24%  Similarity=0.430  Sum_probs=38.4

Q ss_pred             cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR  212 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~  212 (272)
                      +..+...|++|+.|...|| ..+.++++ .....++ ...+..+..++..||+.+|..
T Consensus       576 ~v~~~~~C~~Cg~C~~~CP~~ai~~~~~-~~~~~id-~~~C~~Cg~C~~aCP~~a~~~  631 (636)
T PRK13795        576 LLRRAAECVGCGVCVGACPTGAIRIEEG-KRKISVD-EEKCIHCGKCTEVCPVVKYKD  631 (636)
T ss_pred             EEEccccCCCHhHHHHhCCcccEEeecC-CceEEec-hhhcCChhHHHhhcCCCeeEe
Confidence            4556788999999999999 44556543 2222222 234556789999999999875

>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein

Probab=89.86  E-value=0.29  Score=46.49  Aligned_cols=56  Identities=20%  Similarity=0.251  Sum_probs=37.6

Q ss_pred             CccccCcccccccCccc--CCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~--~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ..+.++...|++|+.|.  .+||.. .+..+ .   .++ ...+..+..++..||.+||.+...
T Consensus       295 ~~p~id~dkCi~Cg~C~~~~aCPt~-AI~~~-~---~Id-~~~Ci~CGaCV~aCP~~AI~~~~~  352 (391)
T TIGR03287       295 VRPKYNPERCENCDPCLVEEACPVP-AIKKD-G---TLN-TEDCFGCGYCAEICPGGAFEVNLG  352 (391)
T ss_pred             eeEEEchhhCcCCCCCcCCcCCCHh-hEecc-c---eeC-hHhCcChHHHHhhCCccceEEeCC
Confidence            34567888899999995  788843 23222 1   122 223446678999999999998644

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.

>TIGR01660 narH nitrate reductase, beta subunit

Probab=89.83  E-value=0.077  Score=51.21  Aligned_cols=58  Identities=17%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRT  213 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~  213 (272)
                      ..+.+|...|+||+.|...|| +.-.++.+.|.+..-.-..  +.+.     .++.+||++|+.+-
T Consensus       207 GiV~ID~dkCiGCg~CV~ACPygAI~~n~~~g~~~KCd~C~--~Rie~G~pPaCVeaCP~~Ar~fG  270 (492)
T TIGR01660       207 GIVLIDQDKCRGWRMCISGCPYKKIYFNWKTGKSEKCIFCY--PRIEAGQPTVCSETCVGRIRYLG  270 (492)
T ss_pred             CeEEEehhhccChHHHHHhCCCCCcEecCCCCccccCCCCh--hHHhCCCCCcchhhcChhhhhhh
Confidence            345689999999999999999 3333444334332221111  1221     58999999997654

The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.

>PRK09130 NADH dehydrogenase subunit G; Validated

Probab=89.52  E-value=0.088  Score=53.78  Aligned_cols=61  Identities=21%  Similarity=0.310  Sum_probs=39.8

Q ss_pred             CccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ..+..|..+||.|+.|+.+|-++     +.+...-....+..-   .-+.+.+-++++.|||+||.-..
T Consensus       138 p~i~~~~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~  206 (687)
T PRK09130        138 PLVKTVMTRCIHCTRCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKP  206 (687)
T ss_pred             CcEEEecccCCcccHHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCccccccc
Confidence            34677899999999999888654     333332122333221   11235678999999999998544

>PRK10194 ferredoxin-type protein; Provisional

Probab=88.94  E-value=0.18  Score=41.93  Aligned_cols=51  Identities=18%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             ccccCcccCCCC-cceeecccc-cceE-EccCCCCHHHHHHHHHhCccccccccc
Q 024126          163 CIGCKNCNNVAP-EVFKIEEDF-GRAR-VYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       163 Cigcg~C~~~ap-~vF~~e~d~-g~a~-v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      |++|+.|...+| +.+.++.+. |... +++ ..........+..||++||.+..
T Consensus       106 ~~~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~-~~~C~gCg~C~~~CP~~AI~~~~  159 (163)
T PRK10194        106 SVECRRCQDSCEPMAIIFRPTLSGIYQPQLN-SQLCNGCGACAASCPVSAITAEY  159 (163)
T ss_pred             CCCcCcchhhCCHhHeEeeecCCCcccceeC-cccCcCcchhhhhCCccceEecc
Confidence            378888988888 334444321 2111 111 11123456788899999988644

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=88.74  E-value=0.21  Score=49.75  Aligned_cols=56  Identities=18%  Similarity=0.398  Sum_probs=36.0

Q ss_pred             cCccccccc------CcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          158 VDEFSCIGC------KNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       158 vDe~~Cigc------g~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .+...|+.|      +.|..+||.. +...++ +....++ ......+..++..||++||.++..
T Consensus       501 ~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~-~~~~~i~-~~~C~~Cg~C~~~CP~~Ai~~~~~  563 (564)
T PRK12771        501 QEAARCLSCGNCFECDNCYGACPQDAIIKLGP-GRRYHFD-YDKCTGCHICADVCPCGAIEMGPG  563 (564)
T ss_pred             hhcccCcccccccccchhhhhCChhheeeecC-CceEEEe-cccCcChhHHHhhcCcCceEeccC
Confidence            445556555      8999999854 444332 3222222 334556779999999999998653

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

Probab=88.28  E-value=0.17  Score=51.57  Aligned_cols=71  Identities=15%  Similarity=0.309  Sum_probs=47.2

Q ss_pred             cCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhh
Q 024126          158 VDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVE  229 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~  229 (272)
                      .|...||-|..|+.+|-++     +.+-+..+...+...   .-+.+.+-++++.|||+||.-... +...=.|.+.+.+
T Consensus       141 ~dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~-~~~ar~wEl~k~~  219 (693)
T COG1034         141 YDMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPF-AFTARKWELKKTP  219 (693)
T ss_pred             cccccceechhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccccChH-HhhhccchhccCc
Confidence            7899999999999888655     222222233333332   223367789999999999987776 5554446666544

>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma

Probab=88.20  E-value=0.18  Score=44.59  Aligned_cols=53  Identities=21%  Similarity=0.421  Sum_probs=37.8

Q ss_pred             cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR  212 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~  212 (272)
                      ..+|+..|++|+.|...|| ..+.++++  ... ++ ......+..++..||+++|.-
T Consensus       169 ~~id~~~C~~C~~C~~aCP~~ai~~~~~--~~~-i~-~~~C~~C~~C~~~CP~~~~~~  222 (228)
T TIGR03294       169 KVVNQGLCMGCGTCAAACPTRAIEMEDG--RPN-VN-RDRCIKCGACYVQCPRAFWPE  222 (228)
T ss_pred             EEEChhhCcChhHHHHhCCHhhEEEeCC--cEE-EC-hhhccCHHHHHHHcCCCCcch
Confidence            4578889999999999999 44666543  332 22 223445778999999988764

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=88.20  E-value=0.24  Score=52.70  Aligned_cols=79  Identities=19%  Similarity=0.336  Sum_probs=47.2

Q ss_pred             Ccccccc----cCcccCCCCcce--eecc-cc-cceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhh
Q 024126          159 DEFSCIG----CKNCNNVAPEVF--KIEE-DF-GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVER  230 (272)
Q Consensus       159 De~~Cig----cg~C~~~ap~vF--~~e~-d~-g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~  230 (272)
                      +...|.+    |+.|..+||..-  .++. .+ +....++....+..+..++..||++|+.+...  +++++....-...
T Consensus       879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~~a~~~~gk--~~~~~kd~~fy~~  956 (1012)
T TIGR03315       879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYDGAPYKDK--LTLFWLEEDFYNS  956 (1012)
T ss_pred             ccccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCCCcccceee--eeeecchHHHHhc
Confidence            4478996    999999999652  2321 10 11222222223677789999999999998887  4444422222333


Q ss_pred             hceeeecCC
Q 024126          231 VNVAMMLSG  239 (272)
Q Consensus       231 ~~v~~~~~g  239 (272)
                      .|-++.++|
T Consensus       957 sggGvTlsG  965 (1012)
T TIGR03315       957 TNSGFLVED  965 (1012)
T ss_pred             cCCcEEEEC
Confidence            344555554

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein

Probab=86.99  E-value=0.13  Score=44.91  Aligned_cols=52  Identities=13%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             ccccccCcccCCCC-cceeecccc-----cceEEccCCCCHHHHH--HHHHhCccccccc
Q 024126          161 FSCIGCKNCNNVAP-EVFKIEEDF-----GRARVYNQCGINEFVQ--QAIESCPVDCIHR  212 (272)
Q Consensus       161 ~~Cigcg~C~~~ap-~vF~~e~d~-----g~a~v~~q~g~~e~i~--~Av~~CP~~aI~~  212 (272)
                      ..|++|+.|...|| +.+.+....     |.............+.  .++..||++||..
T Consensus        53 ~~Ci~Cg~Cv~aCP~~ai~~~~~~~~~~~g~p~~~~~~~~C~~C~d~~Cv~~CP~~Ai~~  112 (213)
T TIGR00397        53 AACVRCGLCVEACPYDILSLASWSDPAPLGTPFFTPREVPCRMCKDIPCARACPTGALDP  112 (213)
T ss_pred             ccccchhHHHHhCCcccccccccccccccCCccccccCCcCCCCCCchHHhHcCHhhhch
Confidence            57999999999998 455554311     2111111112223333  5889999999974

MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.

>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=86.96  E-value=0.39  Score=24.74  Aligned_cols=15  Identities=47%  Similarity=1.158  Sum_probs=12.9

Q ss_pred             ccccccCcccCCCCc
Q 024126          161 FSCIGCKNCNNVAPE  175 (272)
Q Consensus       161 ~~Cigcg~C~~~ap~  175 (272)
                      ..|++|+.|..++|.
T Consensus         2 ~~C~~C~~C~~~Cp~   16 (17)
T PF12800_consen    2 ERCIGCGSCVDVCPT   16 (17)
T ss_dssp             CCCTTSSSSTTTSTT
T ss_pred             CcCCCCchHHhhccC
Confidence            459999999999984

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=85.40  E-value=0.39  Score=46.91  Aligned_cols=60  Identities=23%  Similarity=0.399  Sum_probs=39.4

Q ss_pred             cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHH
Q 024126          156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLE  222 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le  222 (272)
                      ..+|+..|+||+.|.. || +-..++    ++ +++. -...-+-.+..+||.+||.+....+..++.
T Consensus       556 a~vde~~C~gC~~C~~-Cpf~ais~~----ka-~v~~-~~C~gCG~C~~aCp~gai~~~~f~~eqi~a  616 (622)
T COG1148         556 ATVDEDKCTGCGICAE-CPFGAISVD----KA-EVNP-LRCKGCGICSAACPSGAIDLAGFSDEQILA  616 (622)
T ss_pred             cccchhhhcCCcceee-CCCCceecc----cc-ccCh-hhhCcccchhhhCCcccchhcccCHHHHHH
Confidence            4679999999999999 88 333332    12 2211 112233478899999999987776655553

>PF13446 RPT: A repeated domain in UCH-protein

Probab=84.87  E-value=1.7  Score=30.01  Aligned_cols=27  Identities=22%  Similarity=0.445  Sum_probs=24.9

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHH
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMK   96 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~   96 (272)
                      .+.|++|||+++.+.+.|..+|+....
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999887

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=84.25  E-value=0.7  Score=31.85  Aligned_cols=19  Identities=47%  Similarity=0.901  Sum_probs=12.8

Q ss_pred             cccCcccccccCcccCCCC
Q 024126          156 VFVDEFSCIGCKNCNNVAP  174 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap  174 (272)
                      +.++...|+||+.|..++|
T Consensus        34 ~~v~~~~C~GCg~C~~~CP   52 (59)
T PF14697_consen   34 VPVNPDKCIGCGLCVKVCP   52 (59)
T ss_dssp             SECE-TT--S-SCCCCCSS
T ss_pred             EEeccccCcCcCcccccCC
Confidence            4566788999999999999

...

>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional

Probab=84.20  E-value=0.24  Score=41.88  Aligned_cols=51  Identities=20%  Similarity=0.345  Sum_probs=27.7

Q ss_pred             cccccC--cccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          162 SCIGCK--NCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       162 ~Cigcg--~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .|.+|+  .|..++|......++ |...+ + ..........+..||.+||.+...
T Consensus        57 ~C~~C~~~~C~~~Cp~~ai~~~~-~~v~i-~-~~~C~~C~~C~~~CP~~ai~~~~~  109 (181)
T PRK10330         57 VCRQCEDAPCANVCPNGAISRDK-GFVHV-M-QERCIGCKTCVVACPYGAMEVVVR  109 (181)
T ss_pred             cCcCcCCcHHHHHcCcccEEccC-CeEEe-C-hhhCCCcchhhhhCCccCeEeecc
Confidence            566676  666677643211122 44322 1 222345667778888888876543

>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit

Probab=83.88  E-value=1.1  Score=41.51  Aligned_cols=61  Identities=18%  Similarity=0.246  Sum_probs=39.8

Q ss_pred             CCccccCcccccccC--cccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          153 KDHVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg--~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ...++.....|..|.  .|..+||.. +...++.|... +++ .....+..++.+||.+||.+...
T Consensus       121 ~~~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV~-ID~-ekCiGCg~Cv~ACPygAi~~n~~  184 (321)
T TIGR03478       121 NNYYFYLPRICNHCTNPACLAACPTGAIYKREEDGIVL-VDQ-ERCKGYRYCVEACPYKKVYFNPQ  184 (321)
T ss_pred             CceEEEecccCCCCCCccchhhCCcCcEEEecCCCeEE-ECH-HHCcchHHHHHhCCCCCcEecCC
Confidence            334556777899999  799999943 32233325432 322 22345678999999999997654

This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.

>PRK15449 ferredoxin-like protein FixX; Provisional

Probab=83.12  E-value=0.5  Score=36.05  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=20.6

Q ss_pred             CCccccCcccccccCcccCCCCcc
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAPEV  176 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap~v  176 (272)
                      .+.+.+|...|++||.|..+|+..
T Consensus        53 ~G~V~vd~e~CigCg~C~~~C~~~   76 (95)
T PRK15449         53 DGSVRFDYAGCLECGTCRILGLGS   76 (95)
T ss_pred             CCCEEEcCCCCCcchhhhhhcCCC
Confidence            467889999999999999999644

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=82.85  E-value=0.52  Score=46.09  Aligned_cols=66  Identities=21%  Similarity=0.372  Sum_probs=41.6

Q ss_pred             ccccCcccccccCcccCCCCcc--eeecccccceEEc----cC------CCCH---HHHHHHHHhCcccccccccchhhh
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV--FKIEEDFGRARVY----NQ------CGIN---EFVQQAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v--F~~e~d~g~a~v~----~q------~g~~---e~i~~Av~~CP~~aI~~~~~~~l~  219 (272)
                      .-+|| ..|.|||.|..+||-.  -+++...|..+.+    .|      .-|.   -.+..+..+||..+|.+...++.-
T Consensus       219 pryVd-d~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~v  297 (622)
T COG1148         219 PRYVD-DKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEV  297 (622)
T ss_pred             ccccc-ccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCCcEE
Confidence            34778 8899999999999843  2223322332222    22      1122   355678999999999988777544


Q ss_pred             hH
Q 024126          220 LL  221 (272)
Q Consensus       220 ~l  221 (272)
                      .+
T Consensus       298 e~  299 (622)
T COG1148         298 EL  299 (622)
T ss_pred             EE
Confidence            33

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=82.54  E-value=3.2  Score=35.80  Aligned_cols=39  Identities=21%  Similarity=0.141  Sum_probs=30.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024126           79 LPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD  125 (272)
Q Consensus        79 ~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd  125 (272)
                      +++|+.|||++|+.++..+|--|        ++.-..|..||+.+.=
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~ILM   39 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAILM   39 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHH
Confidence            47899999999999999999322        3444679999998653

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=82.17  E-value=0.44  Score=51.25  Aligned_cols=54  Identities=31%  Similarity=0.615  Sum_probs=39.5

Q ss_pred             CCccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHH-hCcc
Q 024126          153 KDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCPV  207 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~--~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~-~CP~  207 (272)
                      ...+++|+..|.|||.|..  -||.+.-.+.+||+.+.++|. .+..+..|+. -||.
T Consensus       649 ~~r~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Idqs-~Cn~d~sC~~G~CPs  705 (1186)
T PRK13029        649 ARRVFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKINQS-SCNKDFSCVKGFCPS  705 (1186)
T ss_pred             CccEEEcccccCCchhhhhccCCceeeeccccCCccEEECHh-HCCCccccccCCCCC
Confidence            3578999999999999965  477777677778987777761 1233446676 8995

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=81.66  E-value=0.39  Score=43.47  Aligned_cols=58  Identities=22%  Similarity=0.302  Sum_probs=36.6

Q ss_pred             ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ...+|...|+.||.|..+|+-. -...+  |..-+++ ..-.+-+-.+.-.||.+||..++.
T Consensus        63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~~~--~~~~~~~-~~lC~GCgaC~~~CP~~AI~~~~~  121 (284)
T COG1149          63 IPEIDPEKCIRCGKCAEVCRFGAIVVLP--GGKPVLN-PDLCEGCGACSIVCPEPAIEEEPV  121 (284)
T ss_pred             ccccChhhccccCcHHHhCCCCeEEEcC--CCceecC-cccccCcccceeeCCCcccccccc
Confidence            4567888899999999999732 22212  1222222 122344557888999999987655

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=80.51  E-value=1.9  Score=39.93  Aligned_cols=55  Identities=22%  Similarity=0.193  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHhcCccccchhccc
Q 024126           81 DATPEQIKKAYYNCMKACHPDLSGD----DPETTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        81 ~a~~~~Ik~ayr~l~~~~HPD~~~~----~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      .++..+|..+|+...+..||++...    .....+.++.|.+||.+|++...|..+|..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~   61 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW   61 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence            3577889999999999999998742    124577889999999999986665566554

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=80.23  E-value=4.6  Score=31.69  Aligned_cols=46  Identities=24%  Similarity=0.366  Sum_probs=34.2

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCchHH----HHHHHHHHHHHHHhcCc
Q 024126           81 DATPEQIKKAYYNCMKACHPDLSGDDPET----TNFCMFINEVYAVLSDP  126 (272)
Q Consensus        81 ~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~----~~~~~~i~~Ay~vLsd~  126 (272)
                      ..+..+++.|.|..-++.|||..+..|+.    ++-++.|+.-.+.|..+
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~   54 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR   54 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence            45678899999999999999998876652    34455666666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	272
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		8e-10
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		1e-07
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-07
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-06
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		3e-06
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		4e-06
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-06
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-05
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-05
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		3e-05
1fxr_A	64	Crystal Structure Of The Ferredoxin I From Desulfov		5e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		7e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		1e-04
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-04
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		6e-04
1dwl_A	59	The Ferredoxin-Cytochrome Complex Using Heteronucle		7e-04
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		8e-04
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		8e-04

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+  +A+ ++IKKAYY   K  HPD + DDP+       + E Y VLSD V+R 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 131 VYD 133
            YD
Sbjct: 68  QYD 70

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 73  YAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132
           Y VLGL  +AT + IKK+Y       HPD + D+PE  +    IN  +A+L+D  +R +Y
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 133 DEIHGYSLIATNPFLDDSC 151
           D+     L     F +++ 
Sbjct: 80  DKYGSLGLYVAEQFGEENV 98

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCM-FINEVYAVLSDPVQR 129
           +YY VLG+   A+PE IKKAY       HPD + D+ E        ++E Y VLSD  +R
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 130 MVYD 133
            +YD
Sbjct: 70  SLYD 73

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+   A   +I+KAY       HPD +  D E       I E Y VL+D  +R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 131 VYDE 134
            YD+
Sbjct: 64  AYDQ 67

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 72  YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131
           YY VLG+ P+AT E++KKAY       HPD + ++ E       I++ Y VLSD  +R +
Sbjct: 8   YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFK---QISQAYEVLSDAKKREL 64
Query: 132 YDE 134
           YD+
Sbjct: 65  YDK 67

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 72  YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131
           YY VLG+ PDA+  ++KKAY       HPD + D  E       I++ Y VLSD  +R +
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFK---QISQAYEVLSDEKKRQI 66
Query: 132 YDE 134
           YD+
Sbjct: 67  YDQ 69

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+   A   +I+KAY       HPD +  D E       I E Y VL+D  +R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 131 VYDE 134
            YD+
Sbjct: 64  AYDQ 67

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+   A+ E +KKAY       HPD     P  T     I   YAVLS+P +R 
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPD-KNHAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 131 VYDE 134
            YD+
Sbjct: 67  QYDQ 70

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+   A   +I+KAY       HPD +  D E       I E Y VL+D  +R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 131 VYDE 134
            YD+
Sbjct: 64  AYDQ 67

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY  LGL   A+ E+IK+AY       HPD    +P        I E Y VLSDP +R 
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPD-KNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 131 VYD 133
           ++D
Sbjct: 63  IFD 65

>pdb|1FXR|A Chain A, Crystal Structure Of The Ferredoxin I From Desulfovibrio Africanus At 2.3 Angstroms Resolution Length = 64

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 157 FVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGIN-EFVQQAIESCPVDCIH 211
           +VD+  CI C++C  +AP  F ++ +  +A V +  G + E V++A+++CPV CIH
Sbjct: 5   YVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIH 60

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYYA+LG+ P    + IK AY    +  HPD+S ++     F   + E + VL D  +R 
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKD-LAEAWEVLKDEQRRA 87
Query: 131 VYDEI 135
            YD++
Sbjct: 88  EYDQL 92

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYYA++G+ P    + IK AY    +  HPD+S  +P+       + E + VLSD  +R 
Sbjct: 6   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 131 VYDEI 135
            YD++
Sbjct: 65  EYDQM 69

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 73  YAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132
           Y +LG+ P A  +++KK Y       HPD    D E       I+E + +L+DP +R +Y
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK---FKEISEAFEILNDPQKREIY 67
Query: 133 DE 134
           D+
Sbjct: 68  DQ 69

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 64  STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVL 123
           S  A+  D Y VLG+   A+   IKKAY    +  HPD    DP   +  + I++ Y +L
Sbjct: 11  SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPD-KNKDPGAEDRFIQISKAYEIL 69
Query: 124 SDPVQRMVYD 133
           S+  +R  YD
Sbjct: 70  SNEEKRTNYD 79

>pdb|1DWL|A Chain A, The Ferredoxin-Cytochrome Complex Using Heteronuclear Nmr And Docking Simulation Length = 59

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212
           + +D   CIGC++C  + PEVF + +   +A V       E  Q AI++CPV+ I +
Sbjct: 2   IVIDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAISK 58

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 72  YYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131
           YY +LG+   A+  QIKKA++      HPD     P+       I E Y  LSD  +R  
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPD-KNKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 132 YDEIHGYS 139
           YD + G+S
Sbjct: 68  YDTL-GHS 74

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF-INEVYAVLSDPVQR 129
           DYY VL +   A+ E IKKAY       HPD + ++ E        + E Y VLSD  +R
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 130 MVYD 133
            +YD
Sbjct: 70  DIYD 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	8e-27
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	3e-23
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	1e-21
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	3e-18
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	3e-16
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	6e-16
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	7e-16
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	7e-16
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	1e-15
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-15
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-15
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	6e-15
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	8e-15
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	9e-15
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	1e-14
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-14
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	3e-14
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	4e-14
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	5e-14
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	6e-14
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-13
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-13
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-13
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-13
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	6e-13
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	8e-13
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	2e-12
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-12
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	5e-12
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	9e-12
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	4e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-10
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	8e-10
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	1e-09
2guz_A	71	Mitochondrial import inner membrane translocase su	5e-09
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	5e-09
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	1e-07
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	3e-04

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Length = 59

 Score = 98.2 bits (245), Expect = 8e-27
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211
           + +D   CIGC++C  + PEVF + +   +A V       E  Q AI++CPV+ I 
Sbjct: 2   IVIDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAIS 57

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Length = 64

 Score = 88.6 bits (220), Expect = 3e-23
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGIN-EFVQQAIESCPVDCIH 211
            +VD+  CI C++C  +AP  F ++ +  +A V +  G + E V++A+++CPV CIH
Sbjct: 4   FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIH 60

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Length = 58

 Score = 84.9 bits (210), Expect = 1e-21
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213
           + V++  C+ C+ C  + P+VF++ E+  +A V N     + V++AI+SCP + I R+
Sbjct: 2   IEVND-DCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS 58

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Length = 60

 Score = 75.4 bits (186), Expect = 3e-18
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211
           V VD  +CIGC  C N+ P+VF++ +D G+A+V          + A +SCP   I 
Sbjct: 3   VRVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETDLPCAKDAADSCPTGAIS 57

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 71.3 bits (175), Expect = 3e-16
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
             Y +LG+   AT  QIK AYY      HPD +    E      F  I++ Y VL     
Sbjct: 18  ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAE--RFTRISQAYVVLGSATL 75

Query: 129 RMVYD 133
           R  YD
Sbjct: 76  RRKYD 80

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 70.9 bits (174), Expect = 6e-16
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
           DYY +LG    ++ EQI   +      CHPD   ++P+      F  + +   +L++   
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVE--TFQKLQKAKEILTNEES 78

Query: 129 RMVYD 133
           R  YD
Sbjct: 79  RARYD 83

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 70.0 bits (172), Expect = 7e-16
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
             Y +LG+ P A  +++KK Y       HPD    D E      F  I+E + +L+DP +
Sbjct: 9   KLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK-----FKEISEAFEILNDPQK 63

Query: 129 RMVYDE 134
           R +YD+
Sbjct: 64  REIYDQ 69

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 70.9 bits (174), Expect = 7e-16
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
             Y VLGL  +AT + IKK+Y       HPD + D+PE  +   F  IN  +A+L+D  +
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAAD--KFKEINNAHAILTDATK 75

Query: 129 RMVYD 133
           R +YD
Sbjct: 76  RNIYD 80

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
           DYY +LG+  +A+ ++IKKAYY   K  HPD + DDP+      F  + E Y VLSD V+
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKE--KFSQLAEAYEVLSDEVK 65

Query: 129 RMVYD 133
           R  YD
Sbjct: 66  RKQYD 70

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 63  ASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFC----MF--I 116
           A    +  D+Y++LG  P A    +K+ Y   +   HPD    D            F  I
Sbjct: 9   ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68

Query: 117 NEVYAVLSDPVQRMVYDEI 135
           ++ + +L +   +  YD  
Sbjct: 69  DQAWKILGNEETKKKYDLQ 87

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMF--INEVYAVLSDPV 127
           DYYA+LG+ P    + IK AY    +  HPD+S ++  E      F  + E + VL D  
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA----KFKDLAEAWEVLKDEQ 84

Query: 128 QRMVYDEI 135
           +R  YD++
Sbjct: 85  RRAEYDQL 92

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 67.3 bits (165), Expect = 6e-15
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 7/66 (10%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
            YY VLG+ PDA+  ++KKAY       HPD + D  E      F  I++ Y VLSD  +
Sbjct: 9   GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAE-----QFKQISQAYEVLSDEKK 63

Query: 129 RMVYDE 134
           R +YD+
Sbjct: 64  RQIYDQ 69

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 70.3 bits (172), Expect = 8e-15
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           ++Y++LG+   A+  +I++A+       HPD + ++P      + IN  Y VL D   R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62

Query: 131 VYD 133
            YD
Sbjct: 63  KYD 65

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 67.0 bits (164), Expect = 9e-15
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 63  ASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAV 122
            S  A+  D Y VLG+   A+   IKKAY    +  HPD + D      F + I++ Y +
Sbjct: 10  QSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRF-IQISKAYEI 68

Query: 123 LSDPVQRMVYD 133
           LS+  +R  YD
Sbjct: 69  LSNEEKRTNYD 79

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Length = 66

 Score = 66.2 bits (162), Expect = 1e-14
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEF----VQQAIESCPVDCIH 211
           V VD+ +CIG   C ++ P+VF++ ++ G+A+   +   +E      ++A+E+CPV  I 
Sbjct: 4   VSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAIT 62

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
            YY +L +   A+ + IKKAY       HPD + D+ E      F  + E Y VLSD  +
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAE-KKFKEVAEAYEVLSDKHK 61

Query: 129 RMVYD 133
           R +YD
Sbjct: 62  REIYD 66

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 65.3 bits (160), Expect = 3e-14
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
           DYY  LGL   A+ E+IK+AY       HPD +  +P       F  I E Y VLSDP +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEE--KFKEIAEAYDVLSDPRK 60

Query: 129 RMVYD 133
           R ++D
Sbjct: 61  REIFD 65

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 65.0 bits (159), Expect = 4e-14
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+   A+ E +KKAY       HPD +     T  F   I   YAVLS+P +R 
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAF-KAIGTAYAVLSNPEKRK 66

Query: 131 VYD 133
            YD
Sbjct: 67  QYD 69

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 65.3 bits (160), Expect = 5e-14
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
           DYY +LG+   A   +I+KAY       HPD +  D E      F  I E Y VL+D  +
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEA--KFKEIKEAYEVLTDSQK 61

Query: 129 RMVYD 133
           R  YD
Sbjct: 62  RAAYD 66

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 64.6 bits (158), Expect = 6e-14
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
           DYY VL +   A+ E IKKAY       HPD + ++ E      F  + E Y VLSD  +
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAE-RRFKQVAEAYEVLSDAKK 68

Query: 129 RMVYD 133
           R +YD
Sbjct: 69  RDIYD 73

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 8/129 (6%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF------INEVYAVLS 124
           D+Y++LG  P A    +K+ Y   +   HPD    D               I++ + +L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 125 DPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFG 184
           +   +  YD       +     +D     + +  +E       +C       + + +D  
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCR--CGGKYSVSKDEA 128

Query: 185 RARVYNQCG 193
                  C 
Sbjct: 129 EEVSLISCD 137

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDPVQ 128
           +YY VLG+   A+PE IKKAY       HPD + D+ E      F  ++E Y VLSD  +
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAE-KKFKLVSEAYEVLSDSKK 68

Query: 129 RMVYD 133
           R +YD
Sbjct: 69  RSLYD 73

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
            YY +LG+   A+  QIKKA++      HPD +        F   I E Y  LSD  +R 
Sbjct: 8   SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKF-REIAEAYETLSDANRRK 66

Query: 131 VYD 133
            YD
Sbjct: 67  EYD 69

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 68.6 bits (167), Expect = 3e-13
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 43  MGHSSKRRSCGRARVTAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDL 102
           MG S          +             ++Y++LG+   A+  +I++A+       HPD 
Sbjct: 1   MGSSHHHHHHSSGHIEGRHD-------QNFYSLLGVSKTASSREIRQAFKKLALKLHPDK 53

Query: 103 SGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHVFVDEF 161
           + ++P      + IN  Y VL D   R  YD+     L        +S          +
Sbjct: 54  NPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIY 112

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 62.9 bits (153), Expect = 6e-13
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 71  DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMF--INEVYAVLSDP 126
               +LGL   A      ++KAY    K  HPD  GD  E         +N +Y  + D 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EE-----KMKKMNTLYKKMEDG 62

Query: 127 VQRMVYDE 134
           V+     +
Sbjct: 63  VKYAHQPD 70

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 64.2 bits (156), Expect = 8e-13
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 71  DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128
               +LGL   A      ++KAY    K  HPD  GD  E       +N +Y  + D V+
Sbjct: 12  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEK---MKKMNTLYKKMEDGVK 67

Query: 129 RMVYDEIHGYSLIATNPFLDDSCPK-DHVFVDEF-----------SCIGCK 167
                +  G    AT  F     P  D ++  ++            C+ C 
Sbjct: 68  YAHQPD-FGGFWDATEVFASSLNPGVDAIYCKQWPECVKKMSTNCICLLCL 117

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 70  DDYYAVLGLLPDA-TPEQIKKAYYNCMKACHPDLSGDDPETTN----FCMFINEVYAVLS 124
           ++ Y VL +  +    +++ KAY    +  HPD   +  E       F   I   Y  L 
Sbjct: 15  ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERF-RVIATAYETLK 73

Query: 125 DPVQRMVYD 133
           D   +  YD
Sbjct: 74  DDEAKTNYD 82

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 59.7 bits (145), Expect = 5e-12
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           D + +LG+ P A+ +++ KAY       HPD          F   +      L   ++  
Sbjct: 28  DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKA-VVNARTALLKNIKSG 86

Query: 131 VYD 133
              
Sbjct: 87  PSS 89

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 61.1 bits (148), Expect = 9e-12
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 71  DYYAVLGLLPDAT--PEQIKKAYYNCMKACHPDLSGDDPETT-----NFCMFINEVYAVL 123
           DY+ + GL        + +   + +  +  HPD      +            IN+ +  L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 124 SDPVQRMVYD-EIHGYSL 140
             P+ R  Y   +HG+ L
Sbjct: 62  RHPLMRAEYLLSLHGFDL 79

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 57.0 bits (138), Expect = 4e-11
 Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 4/76 (5%)

Query: 60  EDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPET-TNFCMFINE 118
                  +I  +  +V+         + KK         HPD + ++ +        +  
Sbjct: 6   HHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQN 65

Query: 119 VYAVLSDPVQRMVYDE 134
               L    ++   D+
Sbjct: 66  EINRLE---KQAFLDQ 78

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTN-FCMF--INEVYAVLSDPV 127
           DYY +LG+  +A  ++I KAY       HPD   ++ E       F  I     VLSDP 
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 128 QRMVYDE 134
            R  +D+
Sbjct: 443 MRKKFDD 449

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 55.8 bits (134), Expect = 8e-10
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 69  ADDYYAVLGLLPDATP-------EQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA 121
              +Y +                 +++K Y       HPD++    E +     +N+ Y 
Sbjct: 10  TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQS---STLNQAYH 66

Query: 122 VLSDPVQRMVYDE 134
            L DP++R  Y  
Sbjct: 67  TLKDPLRRSQYML 79

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* Length = 81

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVY--NQCGINEF-------VQQAIESCP 206
             VD+ +CI C  C   AP+++  +ED G A V   +  GI E        +  A E CP
Sbjct: 4   TIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCP 62

Query: 207 VDCIHR 212
            D I  
Sbjct: 63  TDSIKV 68

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 70  DDYYAVLGLLPDA-TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128
            +   +L L  +  T +++K+ +   M A HPD  G     T     INE    L     
Sbjct: 14  KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATK----INEAKDFLEKRGI 69

Query: 129 R 129
            
Sbjct: 70  S 70

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 51.1 bits (122), Expect = 5e-09
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 6/76 (7%)

Query: 61  DSASTDAIADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINE 118
           D   + A  +    +L L         ++++AY       HPD  G           +N 
Sbjct: 2   DRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD-KGGSHAL---MQELNS 57

Query: 119 VYAVLSDPVQRMVYDE 134
           ++      V  +  + 
Sbjct: 58  LWGTFKTEVYNLRMNL 73

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 71  DYYAVLGLLP--DATPEQIKKAYYNCMKACHPDLSGDDPET-----TNFCMFINEVYAVL 123
           DY++++           +++  Y    +  HPD      +T           +N+ Y  L
Sbjct: 44  DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103

Query: 124 SDPVQRMVYD-EIHGYSLIATNPFLDD 149
             P+ R +Y  ++HG  +     +  D
Sbjct: 104 LAPLSRGLYLLKLHGIEIPERTDYEMD 130

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 70  DDYYAVLGLLPDATPEQIKKAYYNCMKACHPD-LSGDDPETTNFCMF--INEVYAVLSDP 126
           +  +  +G+    TPEQ+KK Y   +   HPD  +G   E     +F  +N+ ++   + 
Sbjct: 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 176

Query: 127 VQRMVY 132
            Q+ +Y
Sbjct: 177 GQKPLY 182

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 9/56 (16%), Positives = 21/56 (37%)

Query: 70  DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125
              +  + L+       ++K+Y   +   HPD       + N      +V+ +L +
Sbjct: 40  GSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQE 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 41/292 (14%), Positives = 83/292 (28%), Gaps = 85/292 (29%)

Query: 8   PVCIDVLK-LQNPS-LNSFSSRSSSRLLA---NNSSSLSLMGHSSKRRSCGRARVTAEDS 62
             C+ VL  +QN    N+F+     ++L        +  L   ++   S     +T    
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 63  ASTDAIADDYYAVLGLLPDATPEQIKK-----------------------AYYNC----- 94
                +       L   P   P ++                          + NC     
Sbjct: 302 EVKSLLLK----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 95  -MKACHPDLSGDDPET--TNFCMFINEV---YAVLS--------DPVQRMVYDEIHGYSL 140
            +++    L   +         +F         +LS          V  +V +++H YSL
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-NKLHKYSL 416

Query: 141 IATNP----------FLDDSCPKD-----H-VFVDEFSCIGCKNCNNVAPEV-------- 176
           +   P          +L+     +     H   VD ++     + +++ P          
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 177 ----FKIEEDFGRARVYNQCGIN-EFVQQAIESCPVDCIHRTSAQQLSLLED 223
                K  E   R  ++    ++  F++Q I           S   L+ L+ 
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI--LNTLQQ 526

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 70  DDYYAVLGLLPDATPEQIKKAYYNCMKACHPD-LSGDDPETTNFCMF--INEVYAVLSD 125
           +  +  +G+    TPEQ+KK Y   +   HP   +G   E     +F  +N+ ++   +
Sbjct: 33  ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.85
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.83
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.83
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.83
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.83
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.82
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.82
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.82
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.81
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.81
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.81
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.81
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.8
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.8
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.8
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.79
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.76
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.74
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.74
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.73
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.71
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.7
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.69
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.69
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.69
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.68
2guz_A	71	Mitochondrial import inner membrane translocase su	99.66
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.66
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.66
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.62
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.6
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.59
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.54
2guz_B	65	Mitochondrial import inner membrane translocase su	99.08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.96
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	98.67
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	98.48
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	98.38
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	98.34
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	98.29
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	98.21
1rgv_A	80	Ferredoxin; electron transport; 2.90A {Thauera aro	97.33
3eun_A	82	Ferredoxin; electron transport, [4Fe-4S] cluster,	97.32
2fgo_A	82	Ferredoxin; allochromatium vinosum, [4Fe-4S] clust	97.27
1xer_A	103	Ferredoxin; electron transport, iron-sulfur, dupli	97.25
1jb0_C	80	Photosystem I iron-sulfur center; membrane protein	97.07
3gyx_B	166	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.91
1jnr_B	150	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.86
1kqf_B	294	FDH-N beta S, formate dehydrogenase, nitrate-induc	96.84
2zvs_A	85	Uncharacterized ferredoxin-like protein YFHL; elec	96.83
1bc6_A	77	7-Fe ferredoxin; electron transport, iron-sulfur;	96.42
1h98_A	78	Ferredoxin; electron transport, thermophilic, iron	96.22
7fd1_A	106	FD1, protein (7-Fe ferredoxin I); electron transpo	96.09
1ti6_B	274	Pyrogallol hydroxytransferase small subunit; molyb	96.08
3i9v_9	182	NADH-quinone oxidoreductase subunit 9; electron tr	96.01
2fdn_A	55	Ferredoxin; electron transport, iron-sulfur, 4Fe-4	95.91
2vpz_B	195	NRFC protein; oxidoreductase, molybdopterin guanin	95.63
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.59
2v2k_A	105	Ferredoxin; iron, transport, iron-sulfur, mycobact	95.47
1h0h_B	214	Formate dehydrogenase (small subunit); tungsten se	95.41
2ivf_B	352	Ethylbenzene dehydrogenase beta-subunit; anaerobic	95.39
1hfe_L	421	Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg	95.23
3c8y_A	574	Iron hydrogenase 1; dithiomethylether, H-cluster,	94.92
3i9v_3	783	NADH-quinone oxidoreductase subunit 3; electron tr	94.43
1q16_B	512	Respiratory nitrate reductase 1 beta chain; membra	92.51
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	91.35
2vpz_B	195	NRFC protein; oxidoreductase, molybdopterin guanin	88.85
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	87.58
2ivf_B	352	Ethylbenzene dehydrogenase beta-subunit; anaerobic	87.01
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	86.34
1q16_B	512	Respiratory nitrate reductase 1 beta chain; membra	85.22

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=9.8e-22  Score=144.21  Aligned_cols=71  Identities=41%  Similarity=0.677  Sum_probs=66.8

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||+++++.++||++||+|++++|||++++++++.+.|+.|++||++|+||.+|..||.++.
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   74 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS   74 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence            46779999999999999999999999999999999998777889999999999999999999999999754

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=4e-21  Score=140.64  Aligned_cols=70  Identities=37%  Similarity=0.581  Sum_probs=65.4

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||+++++.++||+||+++++++|||+++. +.+.+.|++|++||++|+||.+|..||.++.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            456799999999999999999999999999999999986 6788999999999999999999999999754

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=5.8e-21  Score=141.05  Aligned_cols=71  Identities=35%  Similarity=0.483  Sum_probs=65.1

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||+++++.++||+|||++++++|||+++... .+++.|++|++||++|+||.+|..||.++.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            45679999999999999999999999999999999998753 578899999999999999999999999753

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.83  E-value=5.4e-21  Score=139.62  Aligned_cols=68  Identities=38%  Similarity=0.596  Sum_probs=63.7

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++++.++||+||+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   69 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            4699999999999999999999999999999999986 5678999999999999999999999999754

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=5.3e-21  Score=146.38  Aligned_cols=72  Identities=31%  Similarity=0.393  Sum_probs=67.3

Q ss_pred             CCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        65 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      ..+...|||+||||+++++.++||+|||+|++++|||++++++++.+.|++|++||+||+||.+|..||...
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            346778999999999999999999999999999999999877888999999999999999999999999864

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.2e-20  Score=141.33  Aligned_cols=70  Identities=33%  Similarity=0.497  Sum_probs=65.5

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||+++++.++||+|||+|++++|||+++. +.+.+.|++|++||++|+||.+|..||.++.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGH   73 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            456799999999999999999999999999999999985 7789999999999999999999999999764

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.82  E-value=8.9e-21  Score=137.11  Aligned_cols=67  Identities=37%  Similarity=0.569  Sum_probs=61.8

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ...|||+||||+++++.++||++|+++++++|||++++   ..+.|++|++||++|+||.+|..||.+|.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT---CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC---HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            56799999999999999999999999999999999976   36789999999999999999999999753

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=1.1e-20  Score=141.44  Aligned_cols=70  Identities=34%  Similarity=0.521  Sum_probs=65.1

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||+++++.++||+|||++++++|||+++. +.+++.|++|++||++|+||.+|..||.++.
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            356799999999999999999999999999999999987 5688999999999999999999999999754

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=2.2e-20  Score=145.45  Aligned_cols=71  Identities=35%  Similarity=0.547  Sum_probs=66.8

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||+++++.++||+|||+|++++|||++++++++.+.|++|++||++|+||.+|..||.++.
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   84 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS   84 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence            35679999999999999999999999999999999999878889999999999999999999999999764

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=9e-21  Score=148.28  Aligned_cols=71  Identities=24%  Similarity=0.400  Sum_probs=66.7

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||+++++.++||+|||+|++++|||++++++++.+.|++|++||+||+||.+|..||.++.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   87 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR   87 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence            45689999999999999999999999999999999998777889999999999999999999999999754

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.81  E-value=1.7e-20  Score=141.96  Aligned_cols=71  Identities=24%  Similarity=0.456  Sum_probs=64.7

Q ss_pred             CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD------PETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~------~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      .....|||+||||+++++.++||+|||+|++++|||+++.+      +.+.+.|++|++||+||+||.+|..||...
T Consensus        12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   88 (94)
T 1wjz_A           12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            35678999999999999999999999999999999998742      457899999999999999999999999874

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=3.2e-20  Score=140.07  Aligned_cols=71  Identities=38%  Similarity=0.588  Sum_probs=65.1

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||+++++.++||++||+|++++|||+++.. ..+++.|++|++||++|+||.+|..||.++.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   77 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC   77 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            3567999999999999999999999999999999999864 4678899999999999999999999999754

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.80  E-value=1.6e-20  Score=154.87  Aligned_cols=72  Identities=24%  Similarity=0.407  Sum_probs=64.6

Q ss_pred             CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP------ETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~------~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      .....|||+||||+++++.++||+|||+|++++|||+++..+      .+.+.|++|++||++|+||.+|+.||..+.
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            346679999999999999999999999999999999998753      357899999999999999999999998653

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.6e-20  Score=140.70  Aligned_cols=69  Identities=30%  Similarity=0.505  Sum_probs=63.0

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY  138 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~  138 (272)
                      ....|||+||||+++++.++||+|||+|++++|||+++.+   .+.|++|++||++|+||.+|..||.++..
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   73 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLE   73 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence            3567999999999999999999999999999999999763   56899999999999999999999997643

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.80  E-value=1.3e-20  Score=145.25  Aligned_cols=69  Identities=35%  Similarity=0.537  Sum_probs=65.0

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..|||+||||+++++.++||+|||+|++++|||+++.++++++.|++|++||++|+||.+|..||.++.
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence            469999999999999999999999999999999998767788999999999999999999999999864

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.79  E-value=5.4e-20  Score=140.79  Aligned_cols=68  Identities=32%  Similarity=0.468  Sum_probs=63.2

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      .|||+||||+++++.++||+|||++++++|||+++.. ..+.+.|++|++||++|+||.+|..||.++.
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~   70 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR   70 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            5899999999999999999999999999999999874 3578899999999999999999999999754

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.76  E-value=1.8e-19  Score=140.12  Aligned_cols=71  Identities=21%  Similarity=0.288  Sum_probs=65.1

Q ss_pred             CCcCCcccccCcCCCC-CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDA-TPEQIKKAYYNCMKACHPDLSGD---DPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a-~~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||++++ +.++||+|||++++++|||++++   .+.+.+.|++|++||++|+||.+|..||.++.
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            3467999999999999 99999999999999999999986   35678999999999999999999999999764

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.1e-18  Score=131.31  Aligned_cols=63  Identities=21%  Similarity=0.318  Sum_probs=58.5

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccch
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV  131 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~  131 (272)
                      ...|||+||||+++++.++||+|||+|++++|||+++. +.+.+.|++|++||++|+|+.+|..
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence            45799999999999999999999999999999999976 5678899999999999999999874

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.74  E-value=9.3e-19  Score=149.81  Aligned_cols=68  Identities=28%  Similarity=0.502  Sum_probs=64.8

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      .|||+||||+++|+.++||+|||+|++++|||++++++++.+.|+.|++||++|+||.+|+.||.+|.
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~   69 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   69 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence            58999999999999999999999999999999998778889999999999999999999999999764

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.73  E-value=3.9e-19  Score=148.59  Aligned_cols=66  Identities=27%  Similarity=0.339  Sum_probs=58.3

Q ss_pred             CcCCcccccCcCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           68 IADDYYAVLGLLPDAT--PEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ...|||+||||+++|+  .++||+|||++++++|||++++    ++.|++|++||++|+||.+|+.||++|.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            3468999999999998  6999999999999999999876    4688999999999999999999999875

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.71  E-value=1.2e-18  Score=136.48  Aligned_cols=66  Identities=27%  Similarity=0.344  Sum_probs=60.6

Q ss_pred             CcCCcccccCcCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           68 IADDYYAVLGLLPDATP--EQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ...+||+||||+++++.  ++||+|||+|++++|||++++    .+.|++|++||+||+||.+|+.||.++.
T Consensus         6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            34689999999999998  999999999999999999876    4689999999999999999999998754

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.70  E-value=4.6e-18  Score=127.19  Aligned_cols=69  Identities=12%  Similarity=0.043  Sum_probs=60.8

Q ss_pred             CCCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchh
Q 024126           64 STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVY  132 (272)
Q Consensus        64 ~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~~~~i~~Ay~vLsd~~~R~~Y  132 (272)
                      +......++|+||||+++++.++||+|||+|+++||||+++++. .+++.|++|++||++|+|...|..+
T Consensus        10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~   79 (88)
T 1iur_A           10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN   79 (88)
T ss_dssp             CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred             CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            34456689999999999999999999999999999999998763 4789999999999999998877443

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.69  E-value=2.3e-17  Score=142.00  Aligned_cols=82  Identities=16%  Similarity=0.318  Sum_probs=68.3

Q ss_pred             ccccccccCCCCCCCcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCc
Q 024126           54 RARVTAEDSASTDAIADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDP  126 (272)
Q Consensus        54 ~~~~~~~~~~~~~~~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~  126 (272)
                      .+.|..+....+.....|||+||||+++  ++.++||++||+|++++|||++++.++     +.+.|+.||+||+||+||
T Consensus        27 ~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp  106 (207)
T 3bvo_A           27 RFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAP  106 (207)
T ss_dssp             CCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred             ccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            3445555555555567899999999986  799999999999999999999886432     457889999999999999


Q ss_pred             cccchhccc
Q 024126          127 VQRMVYDEI  135 (272)
Q Consensus       127 ~~R~~YD~~  135 (272)
                      .+|+.||..
T Consensus       107 ~~R~~Yd~~  115 (207)
T 3bvo_A          107 LSRGLYLLK  115 (207)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999974

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.69  E-value=1.7e-18  Score=158.93  Aligned_cols=70  Identities=31%  Similarity=0.526  Sum_probs=0.0

Q ss_pred             CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024126           66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH  136 (272)
Q Consensus        66 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~  136 (272)
                      .+..+|||+||||+++|+.++||+|||+|+++||||++++ +++++.|++|++||++|+||.+|+.||.++
T Consensus        24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   93 (329)
T 3lz8_A           24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW   93 (329)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence            3556899999999999999999999999999999999986 578899999999999999999999999974

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.68  E-value=8.6e-18  Score=123.30  Aligned_cols=62  Identities=16%  Similarity=0.252  Sum_probs=56.4

Q ss_pred             CcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhc
Q 024126           68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYD  133 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD  133 (272)
                      ...++|+||||+++  ++.++||+|||+|++++|||++++    .+.|++|++||++|+|+.+|..++
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence            34689999999999  999999999999999999999865    578999999999999999998743

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.8e-17  Score=117.43  Aligned_cols=62  Identities=23%  Similarity=0.235  Sum_probs=54.5

Q ss_pred             CCCCcCCcccccCcCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccc
Q 024126           65 TDAIADDYYAVLGLLP-DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM  130 (272)
Q Consensus        65 ~~~~~~d~Y~iLgv~~-~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~  130 (272)
                      ..+...++|+||||++ +++.++||+|||+|++++|||++++    .+.|++|++||++|+|+..|+
T Consensus         9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A            9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhcC
Confidence            3455679999999999 7999999999999999999999754    568999999999999987663

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.66  E-value=2.8e-17  Score=138.15  Aligned_cols=65  Identities=25%  Similarity=0.452  Sum_probs=59.9

Q ss_pred             CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHHHHHhcCccccchh
Q 024126           68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDPVQRMVY  132 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~---~~~~~~~i~~Ay~vLsd~~~R~~Y  132 (272)
                      ...|||+||||+++++.++||+|||++++++|||++++.+.   +++.|+.|++||+||+|+.+|..|
T Consensus       115 ~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            34799999999999999999999999999999999987543   788999999999999999999987

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.66  E-value=2.9e-17  Score=137.50  Aligned_cols=65  Identities=20%  Similarity=0.385  Sum_probs=60.2

Q ss_pred             CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024126           71 DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        71 d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      |||+||||++++  +.++||++||+|+++||||++++.++     +.+.|..||+||+||+||.+|..||..
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~   73 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            799999999999  99999999999999999999887543     457899999999999999999999986

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.62  E-value=1.1e-16  Score=120.28  Aligned_cols=56  Identities=23%  Similarity=0.425  Sum_probs=51.6

Q ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcC
Q 024126           70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSD  125 (272)
Q Consensus        70 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~~~~~~~~i~~Ay~vLsd  125 (272)
                      .++|++|||++.|+.++||+|||+++++||||++++++   .+++.|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999998754   378899999999999975

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.60  E-value=2.4e-16  Score=121.80  Aligned_cols=61  Identities=11%  Similarity=0.134  Sum_probs=52.9

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC---ch----HHHHHHHHHHHHHHHhcCccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD---DP----ETTNFCMFINEVYAVLSDPVQ  128 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~----~~~~~~~~i~~Ay~vLsd~~~  128 (272)
                      +...|||+|||++. |+.++||+|||++++++|||++++   ++    .+++.|+.|++||++|+|+..
T Consensus        38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            34579999999996 999999999999999999999763   12    368899999999999999863

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.59  E-value=2.4e-16  Score=132.92  Aligned_cols=66  Identities=21%  Similarity=0.415  Sum_probs=60.0

Q ss_pred             CCcCCccccc------CcCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccc
Q 024126           67 AIADDYYAVL------GLLP-DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        67 ~~~~d~Y~iL------gv~~-~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      ....|||+||      |+++ +++.++||++||+|++++|||++++   +.+.|..||+||+||+||.+|..||..
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~   80 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLK   80 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            4567999999      4665 8999999999999999999999986   577899999999999999999999985

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.54  E-value=4.4e-16  Score=156.91  Aligned_cols=71  Identities=27%  Similarity=0.466  Sum_probs=40.7

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ....|||+||||+++|+.++||+|||+|++++|||++++++++++.|++|++||++|+||.+|+.||.+|.
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~   88 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   88 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence            45679999999999999999999999999999999998778889999999999999999999999999863

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.08  E-value=6e-11  Score=83.29  Aligned_cols=52  Identities=10%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             CCcccccCcCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024126           70 DDYYAVLGLLPD---ATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD  125 (272)
Q Consensus        70 ~d~Y~iLgv~~~---a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd  125 (272)
                      .+.|.||||+++   ++.++|+++||+|+..+|||++++    .....+|++|+++|..
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHH
Confidence            467899999999   999999999999999999999876    4566889999999964

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.96  E-value=4.3e-10  Score=103.20  Aligned_cols=66  Identities=32%  Similarity=0.481  Sum_probs=56.1

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcCccccchhcc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD---PETTNFCMFINEVYAVLSDPVQRMVYDE  134 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~---~~~~~~~~~i~~Ay~vLsd~~~R~~YD~  134 (272)
                      ..++|.+||+...++.++|+++|+++++++|||+.+..   ..+.+.|+.|++||++|+|+.+|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            34899999999999999999999999999999999874   2478899999999999999999999997

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=98.67  E-value=6.3e-09  Score=75.46  Aligned_cols=60  Identities=32%  Similarity=0.592  Sum_probs=48.2

Q ss_pred             ccccCcccccccCcccCCCCcceeecccccceEEccC---------CCCHHHHHHHHHhCcccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q---------~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .+.+|...|+|||.|..+||+.|.++++ |.+.+..+         .+....+..++..||++||++...
T Consensus         3 ~v~vd~~~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~   71 (81)
T 1iqz_A            3 YTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE   71 (81)
T ss_dssp             EEEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred             EEEEecccCcccChhhHhCchheeeCCC-CeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence            4678999999999999999999999765 77665532         223456789999999999998764

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=98.48  E-value=7.3e-08  Score=66.26  Aligned_cols=60  Identities=33%  Similarity=0.776  Sum_probs=47.6

Q ss_pred             ccccCcccccccCcccCCCCcceeecccccceEEccC-CCCHHHHHHHHHhCccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q-~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      .+.+|...|+|||.|..++|+.|.++++.|...++.. .........++..||++||.+.+
T Consensus         3 ~~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~   63 (64)
T 1dax_A            3 KFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED   63 (64)
T ss_dssp             CCEECSTTCCSCCHHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred             EEEEccccCCCchHHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence            4578888999999999999999988765456555431 34566788999999999999864

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A

Probab=98.38  E-value=1.5e-07  Score=63.39  Aligned_cols=59  Identities=36%  Similarity=0.693  Sum_probs=43.9

Q ss_pred             ccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      .+.+|...|++|+.|..++|..|.++++ |...+............++..||++||.+.+
T Consensus         2 ~~~i~~~~C~~C~~C~~~Cp~~~~~~~~-~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~~   60 (60)
T 1rof_A            2 KVRVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETDLPCAKDAADSCPTGAISVEE   60 (60)
T ss_dssp             CSEECTTTCCSCCSSTTTCTTTBCCCSS-SCCCBSCSSCCSTTHHHHHHHCTTCCEECCC
T ss_pred             EEEEchhhCCCChHHHHhCcHHHeECCC-CCEeecCchhhHHHHHHHHHhCCHhHEEEeC
Confidence            3567888999999999999998887655 5544442122334567899999999998753

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A

Probab=98.34  E-value=1.3e-07  Score=65.04  Aligned_cols=59  Identities=31%  Similarity=0.619  Sum_probs=45.3

Q ss_pred             ccccCcccccccCcccCCCCcceeecccccceEEccCC-CC---HHHHHHHHHhCccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQC-GI---NEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~-g~---~e~i~~Av~~CP~~aI~~~~  214 (272)
                      .+.+|...|++|+.|...+|+.|.++++ |...++.+. .+   ......++..||++||.+.+
T Consensus         3 ~~~id~~~C~~C~~C~~~Cp~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~   65 (66)
T 1sj1_A            3 KVSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE   65 (66)
T ss_dssp             EEEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             EEEECcccCcCchHHHHhCCceEEECCC-CceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence            3578889999999999999999988654 666555431 22   34568899999999998753

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A

Probab=98.29  E-value=3e-07  Score=61.76  Aligned_cols=56  Identities=32%  Similarity=0.712  Sum_probs=43.3

Q ss_pred             cccCcccccccCcccCCCCcceeecccccceEEccC-CCCHHHHHHHHHhCcccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q-~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      +.+| ..|++|+.|..++|..|.++++ |...++++ .........++..||++||.++
T Consensus         2 v~id-~~C~~C~~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~   58 (58)
T 1f2g_A            2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIVRS   58 (58)
T ss_dssp             CBCT-TTCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCSTHHHHHHHTCSSCCCBCC
T ss_pred             cEEC-CcCccchHHHHhCCccEEECCC-CcEEEeCCCccchHHHHHHHhhCChhhEEeC
Confidence            4678 8899999999999998888664 55555541 3334567899999999999863

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=98.21  E-value=2.9e-07  Score=61.71  Aligned_cols=57  Identities=35%  Similarity=0.777  Sum_probs=42.5

Q ss_pred             cccCcccccccCcccCCCCcceee-cccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAPEVFKI-EEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~vF~~-e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      +.+|...|++|+.|...+|..|.+ +++ |...+............++..||++||.++
T Consensus         2 i~i~~~~C~~C~~C~~~Cp~~~~~~~~~-~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~   59 (59)
T 1dwl_A            2 IVIDHEECIGCESCVELCPEVFAMIDGE-EKAMVTAPDSTAECAQDAIDACPVEAISKE   59 (59)
T ss_dssp             EEESSCCCSSCCGGGGTSTTTEEEEECS-SCEEESCTTCCCGGGGTGGGGSTTCCEEEC
T ss_pred             eEEChhhCcChhHHHHHCCHHheecCCC-CcEEEecChhhhhHHHHHHHhCCHhhEEcC
Confidence            467888999999999999988888 443 665552122233456689999999999863

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1

Probab=97.33  E-value=0.00011  Score=52.48  Aligned_cols=56  Identities=20%  Similarity=0.313  Sum_probs=39.1

Q ss_pred             ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcccccccccch
Q 024126          157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~~  216 (272)
                      ++|...|++|+.|...+| +.+.++++  ... ++ ........      .++..||++||.+....
T Consensus         2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~--~~~-~~-~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~   64 (80)
T 1rgv_A            2 LYINDDCTACDACVEECPNEAITPGDP--IYV-ID-PTKCSECVGAFDEPQCRLVCPADCIPDNPDY   64 (80)
T ss_dssp             BCCCSCCCCCCTTTTTCTTCCEECCSS--SCE-EC-TTTCCTTTTTCSSCHHHHHCSSCCCCBCGGG
T ss_pred             eEeCCCCcChhhHHHHcChhccCcCCC--eeE-Ec-chhCcCCCCcCCccHHHHhcCcccEEecCCc
Confidence            356778999999999999 67777653  222 21 11122344      78999999999987654

>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A

Probab=97.32  E-value=7.3e-05  Score=53.78  Aligned_cols=55  Identities=22%  Similarity=0.436  Sum_probs=38.4

Q ss_pred             ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcccccccccc
Q 024126          157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPVDCIHRTSA  215 (272)
Q Consensus       157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~  215 (272)
                      ++|...|++|+.|..+|| +.+.+++  +...+...  ......      .++..||++||.+...
T Consensus         2 ~~~~~~C~~C~~C~~~CP~~ai~~~~--~~~~i~~~--~C~~C~~~~~~~~C~~~CP~~Ai~~~~~   63 (82)
T 3eun_A            2 LMITDECINCDVCEPECPNGAISQGD--ETYVIEPS--LCTECVGHYETSQCVEVCPVDAIIKDPS   63 (82)
T ss_dssp             EEECTTCCCCCTTGGGCTTCCEEECS--SSEEECGG--GCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred             eEeCCCCcCccchHHHCChhheEcCC--CceEEchh--hcCCCCCCCCccHHHHhCCccceEEcCC
Confidence            457788999999999999 4677755  33322211  112233      7899999999999865

>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}

Probab=97.27  E-value=0.00014  Score=52.15  Aligned_cols=56  Identities=27%  Similarity=0.482  Sum_probs=38.9

Q ss_pred             ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcccccccccch
Q 024126          157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~~  216 (272)
                      +++...|++|+.|..+|| +.+.++++  .. +++. .......      .++..||++||.+....
T Consensus         2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~--~~-~~~~-~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~   64 (82)
T 2fgo_A            2 LKITDDCINCDVCEPECPNGAISQGEE--IY-VIDP-NLCTECVGHYDEPQCQQVCPVDCIPLDDAN   64 (82)
T ss_dssp             BCCCTTCCCCCTTGGGCTTCCEEECSS--SE-EECT-TTCCTTTTTCSSCHHHHHCTTCCCCBCTTS
T ss_pred             ceeCCCCCChhhHHHHCChhccCCCCC--eE-EEEc-hhCccCCCcCCCCHhHhhCCcccEEccCCC
Confidence            456778999999999999 67777653  22 2221 1112233      78999999999987653

>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A

Probab=97.25  E-value=2e-05  Score=59.05  Aligned_cols=60  Identities=27%  Similarity=0.330  Sum_probs=40.6

Q ss_pred             ccccCcccccccCcccCCCC-cceeecccccce-----EEccCCCCHHHHHHHHHhCccccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRA-----RVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a-----~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      .+.+|...|++|+.|..+|| ..|.++++.+..     .+.........+..++..||++||.+..
T Consensus        37 ~~~id~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~  102 (103)
T 1xer_A           37 IVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVKP  102 (103)
T ss_dssp             SEEEETTTCCCCCHHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEECC
T ss_pred             eEEEehhhCCChhhHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccccceEecC
Confidence            46789999999999999999 777776532221     1111111122345899999999998764

>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*

Probab=97.07  E-value=3.1e-05  Score=54.97  Aligned_cols=60  Identities=18%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             cccCcccccccCcccCCCC-cceeeccccc---ceE-EccCCCCHHHHHHHHHhCcccccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG---RAR-VYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g---~a~-v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      +.+|...|++|+.|..+|| +.|.+++..+   ... ..........+..++..||++||.+...
T Consensus         3 ~~~~~~~C~~Cg~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~   67 (80)
T 1jb0_C            3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVY   67 (80)
T ss_dssp             EEEEETTCCCCCHHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEEE
T ss_pred             CcccCCcCcChhHHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeeee
Confidence            4567788999999999999 7787765223   111 1111111223458999999999997554

>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.91  E-value=8.7e-05  Score=61.09  Aligned_cols=63  Identities=21%  Similarity=0.396  Sum_probs=44.6

Q ss_pred             cccCcccccccC-----cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126          156 VFVDEFSCIGCK-----NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       156 v~vDe~~Cigcg-----~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~  219 (272)
                      +.+|...|++|+     .|..+|| +.+.++++.+....+.. .....+..++..||++||.+....++.
T Consensus         2 v~id~~~C~gC~~c~~~~C~~~CP~~ai~~~~~~~~~~~~d~-~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~   70 (166)
T 3gyx_B            2 TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEP-EACWECYSCIKICPQGAITARPYADFA   70 (166)
T ss_dssp             EEECTTTCCCCCSSSCCHHHHHCTTSCEEEETTTTEEEESCG-GGCCCCCHHHHHCSSCCEEECCCTTTC
T ss_pred             CEEcchhcCCCCCCCcchhHHhCCccccEEecCCceeEecCc-ccCcccChHhHhCCccceEEecccccc
Confidence            467889999999     9999999 56777765233333321 122234589999999999998776544

>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*

Probab=96.86  E-value=8.5e-05  Score=60.11  Aligned_cols=65  Identities=22%  Similarity=0.429  Sum_probs=45.2

Q ss_pred             cccCcccccccC-----cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhH
Q 024126          156 VFVDEFSCIGCK-----NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL  221 (272)
Q Consensus       156 v~vDe~~Cigcg-----~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~l  221 (272)
                      +.+|...|++|+     .|..+|| +.+.++++.+.+.+++. .....+..++..||++||.+....++..+
T Consensus         3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~-~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~   73 (150)
T 1jnr_B            3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREP-DMCWECYSCVKMCPQGAIDVRGYVDYSPL   73 (150)
T ss_dssp             EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCG-GGCCCCCHHHHHCTTCCEEECCCTTTCCT
T ss_pred             eEECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCc-ccCcCHhHHHHhCCccceEecCcchhhhh
Confidence            467888999999     9999999 56777765233333322 11223458999999999998876554433

>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*

Probab=96.84  E-value=0.00032  Score=62.86  Aligned_cols=68  Identities=22%  Similarity=0.424  Sum_probs=45.5

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHH---HHHHHhCcccccccccchhhhhH
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFV---QQAIESCPVDCIHRTSAQQLSLL  221 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i---~~Av~~CP~~aI~~~~~~~l~~l  221 (272)
                      ..+.+|...|++|+.|...|| +.+.++++.+....-...++....   -.++..||++||.+.+.+++..+
T Consensus       124 g~v~id~~~CigCg~C~~~CP~~ai~~~~~~~~~~kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~~~~~~~  195 (294)
T 1kqf_B          124 GIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLEL  195 (294)
T ss_dssp             SCEEECGGGCCCCCHHHHHCTTCCCEEETTTTEEECCCTTHHHHTTTCCCHHHHHCTTSCEEEEEHHHHHHH
T ss_pred             cceEeCcccCCCcchhhhcCCCCCcEecCCCCCeeeCCCccchhhcCccHHHHHhCCcCcEEEecHHHHHHH
Confidence            456789999999999999999 567776543432211111111111   18999999999999887765543

>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}

Probab=96.83  E-value=0.00037  Score=50.30  Aligned_cols=55  Identities=18%  Similarity=0.424  Sum_probs=37.4

Q ss_pred             ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcc-cccccccc
Q 024126          157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPV-DCIHRTSA  215 (272)
Q Consensus       157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~-~aI~~~~~  215 (272)
                      +++...|++|+.|..+|| +.+.++++  ...+...  ......      .++..||+ +||.+...
T Consensus         2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~--~~~~~~~--~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~   64 (85)
T 2zvs_A            2 LLITKKCINCDMCEPECPNEAISMGDH--IYEINSD--KCTECVGHYETPTCQKVCPIPNTIVKDPA   64 (85)
T ss_dssp             EEECTTCCCCCTTTTTCTTCCEECCSS--SCEECGG--GCCTTTTTCSSCHHHHHCSSCCEEECTTS
T ss_pred             EEeCCcCcChhHHHHHCchhccCcCCC--ceEEeCh--hccCCCCcCCccHhhHhCcCCCCEEecCC
Confidence            356678999999999999 56776653  2222111  111233      78999999 99998765

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A

Probab=96.42  E-value=0.0042  Score=43.63  Aligned_cols=55  Identities=22%  Similarity=0.361  Sum_probs=37.2

Q ss_pred             ccCcccccc--cCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          157 FVDEFSCIG--CKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       157 ~vDe~~Cig--cg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ++|...|++  |+.|..++| +.+.+++  +... ++. .........+..||++||.+...
T Consensus         2 ~i~~~~C~~c~C~~C~~~Cp~~ai~~~~--~~~~-~~~-~~C~~Cg~C~~~CP~~ai~~~~~   59 (77)
T 1bc6_A            2 YVITEPCIGTKDASCVEVCPVDCIHEGE--DQYY-IDP-DVCIDCGACEAVCPVSAIYHEDF   59 (77)
T ss_dssp             EECCSTTTTCCCCSSTTTCTTCCEEECS--SSEE-ECT-TTCCSCCSHHHHSGGGSSEETTT
T ss_pred             EEeCccCCCCCcchhHHhcccccEEeCC--CcEE-ECc-ccCcCccCCHhhcCccceEecCC
Confidence            457788999  899999999 4566654  3322 221 11122447889999999998654

>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2

Probab=96.22  E-value=0.0025  Score=44.99  Aligned_cols=55  Identities=22%  Similarity=0.288  Sum_probs=38.3

Q ss_pred             ccCcccccc--cCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          157 FVDEFSCIG--CKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       157 ~vDe~~Cig--cg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ++|...|++  |+.|..++| +.+.+++  +... ++. ........++..||++||.+...
T Consensus         2 ~i~~~~C~~c~C~~C~~~CP~~ai~~~~--~~~~-~~~-~~C~~C~~C~~~CP~~Ai~~~~~   59 (78)
T 1h98_A            2 HVICEPCIGVKDQSCVEVCPVECIYDGG--DQFY-IHP-EECIDCGACVPACPVNAIYPEED   59 (78)
T ss_dssp             EEECGGGTTTCCCHHHHHCTTCCEEECS--SSEE-ECT-TTCCCCCTHHHHCTTCCEEEGGG
T ss_pred             EEEchhCCCCCcChhhhhcCccceEcCC--CEEE-ECc-ccCCcHhHHHHhCCccceEeccc
Confidence            467788999  999999999 4677765  3332 222 11222457899999999997655

>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...

Probab=96.09  E-value=0.0026  Score=47.76  Aligned_cols=55  Identities=24%  Similarity=0.386  Sum_probs=38.9

Q ss_pred             ccCcccccccC--cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          157 FVDEFSCIGCK--NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       157 ~vDe~~Cigcg--~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ++|...|++|+  .|..+|| +.+.+++  +... ++. .....+..++..||++||.+...
T Consensus         2 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~--~~~~-i~~-~~C~~Cg~C~~~CP~~ai~~~~~   59 (106)
T 7fd1_A            2 FVVTDNCIKCKYTDCVEVCPVDCFYEGP--NFLV-IHP-DECIDCALCEPECPAQAIFSEDE   59 (106)
T ss_dssp             EEECGGGTTTCCCHHHHHCTTCCEEECS--SCEE-ECT-TTCCCCCTTGGGCTTCCEEEGGG
T ss_pred             eECccccCCccCcHHHHHcCccceEcCC--CcEE-ECc-ccCCChhhhHHhCCChhhhcccc
Confidence            46778899999  9999999 5666655  3332 221 11223447899999999998775

>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*

Probab=96.08  E-value=0.0019  Score=57.31  Aligned_cols=62  Identities=15%  Similarity=0.131  Sum_probs=42.5

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccC-CCCHHHH------H---HHHHhCcccccccccchhh
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQ-CGINEFV------Q---QAIESCPVDCIHRTSAQQL  218 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q-~g~~e~i------~---~Av~~CP~~aI~~~~~~~l  218 (272)
                      ..+.+|...|++|+.|...|| +...++++.+..   .. .+=.+.+      -   .++..||++||.+.+..+.
T Consensus        90 g~v~id~~~CigC~~C~~~CP~~Ai~~~~~~~~~---~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~~~dp  162 (274)
T 1ti6_B           90 GIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVA---QKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKTTPE  162 (274)
T ss_dssp             SCEEECTTTTTTCGGGGGGCSSCCCEEETTTTEE---ECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEECHH
T ss_pred             CcEEechhhccchHHHHhhCccCCeEEEcccCcc---ccCCCchhhhhhhccCCCCcchhhhCCcCceEEcCCCcH
Confidence            457789999999999999999 445555532321   12 2111222      1   7899999999999887744

>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*

Probab=96.01  E-value=0.00061  Score=55.86  Aligned_cols=57  Identities=21%  Similarity=0.259  Sum_probs=35.7

Q ss_pred             CcccccccCcccCCCC-cceeeccccc------------ceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          159 DEFSCIGCKNCNNVAP-EVFKIEEDFG------------RARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       159 De~~Cigcg~C~~~ap-~vF~~e~d~g------------~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      |...|++|+.|..+|| ..+.++.+..            .............+..++..||++||.+...
T Consensus        49 d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~  118 (182)
T 3i9v_9           49 GLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYD  118 (182)
T ss_dssp             SCBSCCCCCHHHHHCTTCCEEEEEECCCSSSCSSSSSCEEEEEEEETTTCCCCCHHHHHCSSSCEEECSC
T ss_pred             CCccCcccccchhhCCcccEEeecccccccccccccccccceeecCCCcCcChhChhhhCCccceEecCc
Confidence            5678999999999999 3444432211            0011111222334558999999999998754

>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A

Probab=95.91  E-value=0.0069  Score=39.49  Aligned_cols=49  Identities=20%  Similarity=0.375  Sum_probs=32.8

Q ss_pred             cccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126          160 EFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR  212 (272)
Q Consensus       160 e~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~  212 (272)
                      ...|++|+.|...+|. .+.+++  +... ++. .........+..||++||.+
T Consensus         5 ~~~C~~C~~C~~~CP~~ai~~~~--~~~~-~~~-~~C~~C~~C~~~CP~~ai~~   54 (55)
T 2fdn_A            5 NEACISCGACEPECPVNAISSGD--DRYV-IDA-DTCIDCGACAGVCPVDAPVQ   54 (55)
T ss_dssp             CTTCCCCCTTGGGCTTCCEECCS--SSCE-ECT-TTCCCCCHHHHTCTTCCEEE
T ss_pred             cccCcChhhHHHHCCccccCcCC--CEEE-ecc-ccCcChhChHHHccccceec
Confidence            5679999999999994 465554  3322 221 11122447899999999975

>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*

Probab=95.63  E-value=0.0058  Score=51.31  Aligned_cols=59  Identities=20%  Similarity=0.377  Sum_probs=41.6

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccC-CCCHHHHH-----HHHHhCcccccccccch
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQ-CGINEFVQ-----QAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q-~g~~e~i~-----~Av~~CP~~aI~~~~~~  216 (272)
                      ..+.+|...|++|+.|...|| +.+.++++.+    ... .+-.+.+.     .++..||++||.+.+..
T Consensus        81 g~~~id~~~CigC~~C~~~CP~~Ai~~~~~~~----~~kC~~C~~~~~~g~~p~Cv~~CP~~Ai~~g~~~  146 (195)
T 2vpz_B           81 GLVLVDPKKCIACGACIAACPYDARYLHPAGY----VSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLE  146 (195)
T ss_dssp             SCEEECTTTCCCCCHHHHHCTTCCCEECTTSS----EECCCTTHHHHHTTCCCHHHHSCTTCCEEEEETT
T ss_pred             cceeecCCCCCCcChhHhhCCCCCeEECCCCC----CccCcCcchHHhCCCCchhHhhCCcccEEEeccc
Confidence            356788999999999999999 6677776533    111 22122222     58999999999997655

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.59  E-value=0.00094  Score=69.36  Aligned_cols=60  Identities=20%  Similarity=0.425  Sum_probs=44.7

Q ss_pred             CccccCcccccccCcccCCCC----cceeecccccceEEccCCCCHHHHHHHHHhCcc-cccccccch
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP----EVFKIEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHRTSAQ  216 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap----~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~-~aI~~~~~~  216 (272)
                      ..+.+|+..|++|+.|..+||    +.+.++++.+.. ++.  ..+..+..++..||+ +||.++...
T Consensus       944 ~~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~-~~~--~~C~~Cg~C~~~CP~~~Ai~~~~~~ 1008 (1025)
T 1gte_A          944 VVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLP-TVT--DTCTGCTLCLSVCPIIDCIRMVSRT 1008 (1025)
T ss_dssp             EEEEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCE-EEC--TTCCCCCHHHHHCSSTTTEEEEECC
T ss_pred             ceEEEEcccCcccCHHHHhcCccccCCEEEeCCCceE-EeC--ccCCChhHHHhhCCCCCCEEEecCc
Confidence            346789999999999999999    678777652333 332  334456689999999 999987654

>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}

Probab=95.47  E-value=0.0009  Score=50.10  Aligned_cols=56  Identities=16%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             ccCccccccc--CcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126          157 FVDEFSCIGC--KNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       157 ~vDe~~Cigc--g~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~  216 (272)
                      ++|...|++|  +.|..+|| +.+.++++  .. .++. .....+..++..||++||.+....
T Consensus         2 ~i~~~~C~~C~c~~C~~~CP~~ai~~~~~--~~-~~~~-~~C~~Cg~C~~~CP~~Ai~~~~~~   60 (105)
T 2v2k_A            2 YVIAEPCVDVKDKACIEECPVDCIYEGAR--ML-YIHP-DECVDCGACEPVCPVEAIYYEDDV   60 (105)
T ss_dssp             EEECGGGTTTCCCHHHHHCTTCCEEECSS--CE-EECT-TTCCCCCCSGGGCTTCCEEEGGGC
T ss_pred             EEecccCCCCCcChhhhhcCccccCcCCC--cE-EEeC-CcCcchhhHHHhCCccCEEecCCC
Confidence            4677889988  99999999 56776653  22 2221 112224468899999999987553

>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5

Probab=95.41  E-value=0.0024  Score=54.43  Aligned_cols=65  Identities=9%  Similarity=0.151  Sum_probs=44.6

Q ss_pred             CccccCccccc--ccCcccCCCC-cceeecccccceEEccC-CCCHHHHH-----HHHHhCcccccccccchhhhhH
Q 024126          154 DHVFVDEFSCI--GCKNCNNVAP-EVFKIEEDFGRARVYNQ-CGINEFVQ-----QAIESCPVDCIHRTSAQQLSLL  221 (272)
Q Consensus       154 ~~v~vDe~~Ci--gcg~C~~~ap-~vF~~e~d~g~a~v~~q-~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~~l  221 (272)
                      ..+.+|...|+  +|+.|...|| +...++++.+..   .. .+=.+.+.     .++..||++||.+.+..++..+
T Consensus        99 g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~~~~~~~---~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~~~~~~  172 (214)
T 1h0h_B           99 GCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQM---AKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEMEAM  172 (214)
T ss_dssp             CCEEECGGGGGCSCHHHHHHHCTTCCCEECTTSSCE---ECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHHHHHHH
T ss_pred             CeEEEeHHHCccccccHHHHhcCCCCeEecCCCccc---CcCCCCcchhhcCCChhHHHhcCcccEEEccHHHHHHH
Confidence            35678999999  9999999999 456665542321   11 22112221     6899999999999988776543

>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}

Probab=95.39  E-value=0.0047  Score=56.72  Aligned_cols=62  Identities=15%  Similarity=0.206  Sum_probs=41.3

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchh
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQ  217 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~  217 (272)
                      ..+.+|...|++|+.|..+|| +...+++..+....-  ..=.+.+.     .++..||++||.+.+..+
T Consensus       175 g~v~id~~kCigCg~Cv~aCP~~Ai~~~~~~~~~~kC--~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~d  242 (352)
T 2ivf_B          175 GIVLVDQERCKGHRHCVEACPYKAIYFNPVSQTSEKC--ILCYPRIEKGIANACNRQCPGRVRAFGYLDD  242 (352)
T ss_dssp             CCEEECTTTCCCCCHHHHHCTTCCEEEETTTTEEEEC--CTTHHHHTTTBCCHHHHTCTTCCEEEEETTC
T ss_pred             CeEEechhhcCCchHHHhhcCccceeccccccccccc--CCCcchhhcCCCChHHHhcCccceeccccch
Confidence            346778899999999999999 445555432322211  11112232     789999999999977654

>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*

Probab=95.23  E-value=0.00084  Score=63.10  Aligned_cols=59  Identities=27%  Similarity=0.459  Sum_probs=39.9

Q ss_pred             ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccc-ccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR-TSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~-~~~  215 (272)
                      .+.+|...|++|+.|..+||. .+.+++  |....+.....+..+..++..||++||.+ ...
T Consensus        27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~~~--~~~~~i~~~~~C~~Cg~C~~~CP~~Ai~~~~~~   87 (421)
T 1hfe_L           27 FVQIDEAKCIGCDTCSQYCPTAAIFGEM--GEPHSIPHIEACINCGQCLTHCPENAIYEAQSW   87 (421)
T ss_dssp             SEEECTTTCCCCCHHHHHCTTCCCBCCT--TSCCBCCCGGGCCCCCTTGGGCTTCCEEESCCC
T ss_pred             eEEECcccCCCccHHHHhcCcCceeccc--ccceeecChhhCCchhhHHHhhCcCCccccccc
Confidence            567899999999999999995 444443  33222211122234558999999999998 443

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*

Probab=94.92  E-value=0.0021  Score=62.67  Aligned_cols=61  Identities=21%  Similarity=0.352  Sum_probs=42.5

Q ss_pred             CccccCcccccccCcccCCCCc-----ceeecccccc-eEEcc------CCCCHHHHHHHHHhCcccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGR-ARVYN------QCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~-----vF~~e~d~g~-a~v~~------q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ..+.+|...|++|+.|..+||.     .+.+.++ |. ..+..      .......+..++..||++||.+...
T Consensus       138 ~~i~~d~~kCi~Cg~Cv~~CP~~~~~~ai~~~~~-g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~  210 (574)
T 3c8y_A          138 KSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNK-NGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKSH  210 (574)
T ss_dssp             SSEEEEGGGCCCCCHHHHHHHHHHSCCCSEEEEE-TTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECCC
T ss_pred             CcceeCcccCcCCCCccchhCchhcCCceeeccC-CccceecccccceechhhCCcchhHHHhhccCCcccccc
Confidence            3678899999999999999995     5666554 32 22211      0122234568999999999998764

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*

Probab=94.43  E-value=0.0037  Score=63.11  Aligned_cols=62  Identities=24%  Similarity=0.340  Sum_probs=41.1

Q ss_pred             CccccCcccccccCcccCCCCc-----ceeecccccceEEccC--CCCHHHHHHHHHhCcccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGRARVYNQ--CGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~-----vF~~e~d~g~a~v~~q--~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ..+.+|..+||+|+.|..+|++     .+.+.+......+...  ..++..+-.+++.||++||...+.
T Consensus       172 p~i~~d~~~CI~C~~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~gAl~~~~~  240 (783)
T 3i9v_3          172 PFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTA  240 (783)
T ss_dssp             TTEEECTTTCCCCCHHHHHHHHTTCCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSSSSEEEGGG
T ss_pred             ccEEEchhhCCCccHHHHHhhhhcCCceeeeecCCCccEEccCCCCCCCccchhHHhhcccCceecccc
Confidence            3567799999999999999954     3444433122222221  123556778999999999986654

>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*

Probab=92.51  E-value=0.032  Score=53.55  Aligned_cols=58  Identities=17%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRT  213 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~  213 (272)
                      ..+.+|...|++|+.|..+|| +...++.+.+....-...+  +.+.     .++..||++||.+.
T Consensus       208 g~v~id~~kCigCg~Cv~~CP~~AI~~~~~~~~~~kC~~Cg--~ri~~G~~P~Cv~~CP~~Ai~~g  271 (512)
T 1q16_B          208 GIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCY--PRIEAGQPTVCSETCVGRIRYLG  271 (512)
T ss_dssp             CCEEECTTTCCCCCCHHHHCTTCCEEEETTTTEEEECCTTH--HHHTTTCCCHHHHTCTTCCEEEE
T ss_pred             CeEEECHHHCCCchHHHhhCCccceecccCCCCcccCcCCC--chhhcCCCCceEeeCchhhhhcc
Confidence            346678889999999999998 4455554433322111111  2221     78999999998865

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=91.35  E-value=0.03  Score=59.26  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=40.4

Q ss_pred             cccCcccccccCcccCCCCcc-eee---ccc--------c-----------cc-eEEccCCCCHHHHHHHHHhCcc--cc
Q 024126          156 VFVDEFSCIGCKNCNNVAPEV-FKI---EED--------F-----------GR-ARVYNQCGINEFVQQAIESCPV--DC  209 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~v-F~~---e~d--------~-----------g~-a~v~~q~g~~e~i~~Av~~CP~--~a  209 (272)
                      ..+|...|++|+.|..+||.. ..+   +++        +           |. ..+.....++..|-.++..||+  +|
T Consensus       681 p~~d~~kCi~Cg~Cv~vCP~~AI~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~Cv~vCP~~~~A  760 (1231)
T 2c42_A          681 PQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPKEKA  760 (1231)
T ss_dssp             EEECTTTCCCCCHHHHHCSSCCEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCHHHHHCSSSSCS
T ss_pred             eEEeCccCCchhhHHHhCCcccccccccchHHHhhCcccccccccccccccccccceeechhhCCChhHHHhhCCCCccC
Confidence            356889999999999999954 222   111        0           10 0111123344556699999999  99


Q ss_pred             cccccchh
Q 024126          210 IHRTSAQQ  217 (272)
Q Consensus       210 I~~~~~~~  217 (272)
                      |.++...+
T Consensus       761 I~~~~~~~  768 (1231)
T 2c42_A          761 LVMQPLDT  768 (1231)
T ss_dssp             EEEEEGGG
T ss_pred             eEEecchh
Confidence            99887764

>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*

Probab=88.85  E-value=0.41  Score=39.76  Aligned_cols=58  Identities=22%  Similarity=0.303  Sum_probs=38.9

Q ss_pred             ccccCcccccccC--cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          155 HVFVDEFSCIGCK--NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg--~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .+.++...|++|+  .|..+|| ..+.++++ |... ++. .....+...+..||.+||.+...
T Consensus        50 ~~~~~~~~C~~C~~p~C~~~CP~gAi~~~~~-g~~~-id~-~~CigC~~C~~~CP~~Ai~~~~~  110 (195)
T 2vpz_B           50 VVEFRPEQCLHCENPPCVPVCPTGASYQTKD-GLVL-VDP-KKCIACGACIAACPYDARYLHPA  110 (195)
T ss_dssp             EEEEEEEECCCCSSCTTTTTCSSSCEEECTT-SCEE-ECT-TTCCCCCHHHHHCTTCCCEECTT
T ss_pred             eEEECcccCcCccCcHHHHhcCCCceecccc-ccee-ecC-CCCCCcChhHhhCCCCCeEECCC
Confidence            4566788899999  6999999 44555443 5433 222 11223457889999999998654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=87.58  E-value=0.35  Score=47.45  Aligned_cols=46  Identities=7%  Similarity=0.071  Sum_probs=36.1

Q ss_pred             cCCcccccCcCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Q 024126           69 ADDYYAVLGLLPDATP--EQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAV  122 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~v  122 (272)
                      ..|||.+||++.+...  .+|+++||++++..+++        .+++..|..|+.|
T Consensus       628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            3459999999776655  77999999999976554        4577888888876

>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}

Probab=87.01  E-value=0.077  Score=48.58  Aligned_cols=59  Identities=22%  Similarity=0.336  Sum_probs=39.5

Q ss_pred             ccccCcccccccC--cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          155 HVFVDEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg--~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .+.++...|++|+  .|..+||. .+..+++.|... ++. .....+..++..||.+||.+...
T Consensus       143 ~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g~v~-id~-~kCigCg~Cv~aCP~~Ai~~~~~  204 (352)
T 2ivf_B          143 FFFYLARMCNHCTNPACLAACPTGAIYKREDNGIVL-VDQ-ERCKGHRHCVEACPYKAIYFNPV  204 (352)
T ss_dssp             ECEEEEECCCCCSSCHHHHHCTTCCEEECTTTCCEE-ECT-TTCCCCCHHHHHCTTCCEEEETT
T ss_pred             EEEECCCCCcCcCCccccccCCCCceeecCCCCeEE-ech-hhcCCchHHHhhcCccceecccc
Confidence            4567888999999  89999994 344443325433 322 22223558899999999987653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=86.34  E-value=0.12  Score=50.16  Aligned_cols=56  Identities=14%  Similarity=0.041  Sum_probs=39.5

Q ss_pred             Ccccc------cccCcccCCCC-cceee-ccccc-c-eEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          159 DEFSC------IGCKNCNNVAP-EVFKI-EEDFG-R-ARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       159 De~~C------igcg~C~~~ap-~vF~~-e~d~g-~-a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      |...|      ..|+.|..+|| .++++ +++.| . ..+++ ...+-.|..+...||+++|.|+.+
T Consensus       508 d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~-~~~Ci~C~~C~~~cp~~~i~~~~p  573 (584)
T 2gmh_A          508 DDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQIN-AQNCVHCKTCDIKDPSQNINWVVP  573 (584)
T ss_dssp             STTHHHHTHHHHHCCTHHHHCTTCCEEEEECSSTTCEEEEEC-GGGCCCCCHHHHHCTTCCEEECCC
T ss_pred             CcccchhhchhhhcchhhhcCChhhEEEeecCCCCceEEEEe-CCCCcCCCCchhhCCCCCceeECC
Confidence            66778      89999999999 77888 53225 1 22332 222334568999999999999765

>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*

Probab=85.22  E-value=0.097  Score=50.20  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=39.1

Q ss_pred             ccccCcccccccC--cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          155 HVFVDEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       155 ~v~vDe~~Cigcg--~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      .+.++...|++|+  .|..+||. .+.++++.|...+- + .....+..++..||++||.+...
T Consensus       176 ~i~~~~~~C~~C~~~~Cv~aCP~gAI~~~~~~g~v~id-~-~kCigCg~Cv~~CP~~AI~~~~~  237 (512)
T 1q16_B          176 FMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLID-Q-DKCRGWRMCITGCPYKKIYFNWK  237 (512)
T ss_dssp             CCEEEEECCCCCSSCHHHHTCTTCCEEEETTTCCEEEC-T-TTCCCCCCHHHHCTTCCEEEETT
T ss_pred             eEEecCccCcCCCCchhhhhCCcCcEEeecCCCeEEEC-H-HHCCCchHHHhhCCccceecccC
Confidence            3566888999999  59999994 35454332543332 2 12223557889999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	3e-16
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	3e-16
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-15
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-13
d1fxda_	58	d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [T	4e-13
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	5e-13
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-12
d1fxra_	64	d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacte	8e-12
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	7e-11
d1iqza_	81	d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyt	2e-10
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-09
d1sj1a_	66	d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus	3e-07
d1vjwa_	59	d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [T	8e-07
d1hfel2	85	d.58.1.5 (L:2-86) Fe-only hydrogenase larger subun	0.002

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 69.7 bits (170), Expect = 3e-16
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 71  DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130
           DYY +LG+   A   +I+KAY       HPD +  D E       I E Y VL+D  +R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 131 VYDEIHGYS 139
            YD+ +G++
Sbjct: 64  AYDQ-YGHA 71

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.1 bits (171), Expect = 3e-16
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 62  SASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD------PETTNFCMF 115
            A    +  D+Y++LG  P A    +K+ Y   +   HPD    D       E     + 
Sbjct: 8   MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIE 67

Query: 116 INEVYAVLSDPVQRMVYDE 134
           I++ + +L +   +  YD 
Sbjct: 68  IDQAWKILGNEETKKKYDL 86

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.9 bits (163), Expect = 4e-15
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 70  DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDP 126
           +  +  +G+    TPEQ+KK Y   +   HPD +   P         M +N+ ++   + 
Sbjct: 33  ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 92

Query: 127 VQRMVY 132
            Q+ +Y
Sbjct: 93  GQKPLY 98

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 61.6 bits (149), Expect = 3e-13
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 61  DSASTDAIADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINE 118
           D   + A  +    +L L         ++++AY       HPD  G           +N 
Sbjct: 2   DRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH----ALMQELNS 57

Query: 119 VYAVLSDPVQRMVYD 133
           ++      V  +  +
Sbjct: 58  LWGTFKTEVYNLRMN 72

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Length = 58

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

 Score = 60.8 bits (147), Expect = 4e-13
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213
           + V++  C+ C+ C  + P+VF++ E+  +A V N     + V++AI+SCP + I R+
Sbjct: 2   IEVND-DCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS 58

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 60.8 bits (147), Expect = 5e-13
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 71  DYYAVLGLLPDAT--PEQIKKAYYNCMKACHPDLSGDDPETTNFCMF-----INEVYAVL 123
           DY+ + GL        + +   + +  +  HPD      +            IN+ +  L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 124 SDPVQRMVYD-EIHG 137
             P+ R  Y   +HG
Sbjct: 62  RHPLMRAEYLLSLHG 76

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 1e-12
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 69  ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128
             DYY  LGL   A+ E+IK+AY       HPD    +P        I E Y VLSDP +
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPD-KNKEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 129 RMVYDE 134
           R ++D 
Sbjct: 61  REIFDR 66

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

 Score = 57.1 bits (137), Expect = 8e-12
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGIN-EFVQQAIESCPVDCIH 211
            +VD+  CI C++C  +AP  F ++ +  +A V +  G + E V++A+++CPV CIH
Sbjct: 4   FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIH 60

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 7e-11
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 4/68 (5%)

Query: 68  IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDP 126
           I  +  +V+         + KK         HPD + ++          +      L   
Sbjct: 14  ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK- 72

Query: 127 VQRMVYDE 134
             +   D+
Sbjct: 73  --QAFLDQ 78

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

 Score = 53.6 bits (128), Expect = 2e-10
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEF---------VQQAIESCP 206
             VD+ +CI C  C   AP+++  +ED G A V                  +  A E CP
Sbjct: 4   TIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCP 62

Query: 207 VDCIHRT 213
            D I   
Sbjct: 63  TDSIKVA 69

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 71  DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQ 128
               +LGL   A      ++KAY    K  HPD              +N +Y  + D V+
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD----KGGDEEKMKKMNTLYKKMEDGVK 64

Query: 129 RMVYDE 134
                +
Sbjct: 65  YAHQPD 70

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 44.8 bits (105), Expect = 3e-07
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINE----FVQQAIESCPVDCIH 211
           V VD+ +CIG   C ++ P+VF    D G+A+   +   +E      ++A+E+CPV  I 
Sbjct: 4   VSVDQDTCIGDAICASLCPDVF-EMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAIT 62

Query: 212 RTSA 215
              A
Sbjct: 63  IEEA 66

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} Length = 59

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.3 bits (101), Expect = 8e-07
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211
           V VD  +CIGC  C N+ P+VF    D G+A+V          + A +SCP   I 
Sbjct: 3   VRVDADACIGCGVCENLCPDVF-QLGDDGKAKVLQPETDLPCAKDAADSCPTGAIS 57

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase larger subunit, N-domain
species: Desulfovibrio desulfuricans [TaxId: 876]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213
            V +DE  CIGC  C+   P    I  + G               Q +  CP + I+  
Sbjct: 26  FVQIDEAKCIGCDTCSQYCP-TAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEA 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.81
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.79
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.73
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.69
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.63
d1fxra_	64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	99.4
d1iqza_	81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	99.2
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	99.09
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	99.08
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	99.06
d1xera_	103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	97.23
d3c8ya3	83	Fe-only hydrogenase, second domain {Clostridium pa	97.12
d1hfel2	85	Fe-only hydrogenase larger subunit, N-domain {Desu	97.03
d2fdna_	55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	96.92
d1bc6a_	77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	96.9
d1jnrb_	149	Adenylylsulfate reductase B subunit {Archaeon Arch	96.89
d1kqfb1	244	Formate dehydrogenase N, iron-sulfur (beta) subuni	96.87
d1blua_	80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	96.86
d1rgva_	80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	96.59
d1vlfn2	195	Transhydroxylase beta subunit, BthL, N-terminal do	96.58
d1dura_	55	Ferredoxin II {Peptostreptococcus asaccharolyticus	96.43
d2fug91	154	NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus	96.33
d1h98a_	77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	96.27
d2fug34	151	NADH-quinone oxidoreductase chain 3, Nqo3, domain	96.09
d1gtea5	173	Dihydropyrimidine dehydrogenase, C-terminal domain	96.06
d1jb0c_	80	Photosystem I iron-sulfur protein PsaC {Synechococ	95.98
d7fd1a_	106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	95.49
d1y5ib1	509	Respiratory nitrate reductase 1 beta chain {Escher	94.69
d2c42a5	117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	92.66
d1h0hb_	214	Tungsten containing formate dehydrogenase, small s	92.45
d7fd1a_	106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	86.75
d3c7bb1	65	DsrB insert domain {Archaeoglobus fulgidus [TaxId:	84.67
d1bc6a_	77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	82.27
d1hfel2	85	Fe-only hydrogenase larger subunit, N-domain {Desu	81.18
d1h98a_	77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	80.55
d1dura_	55	Ferredoxin II {Peptostreptococcus asaccharolyticus	80.06

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.1e-23  Score=151.65  Aligned_cols=69  Identities=35%  Similarity=0.537  Sum_probs=65.5

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      .+|||+||||+++||.++||+|||++++++|||++++++.+++.|..|++||+||+||.+|..||.+|.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   70 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTT
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Confidence            579999999999999999999999999999999998878888999999999999999999999999864

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.4e-22  Score=142.99  Aligned_cols=69  Identities=38%  Similarity=0.574  Sum_probs=64.2

Q ss_pred             cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024126           69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY  138 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~~  138 (272)
                      .+|||+||||+++++.++||+||+++++++|||++.. +++.+.|..|++||+||+||.+|..||++|..
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~   70 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence            5699999999999999999999999999999999876 66788999999999999999999999997653

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=8.6e-21  Score=142.05  Aligned_cols=69  Identities=25%  Similarity=0.462  Sum_probs=62.8

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhcCccccchhccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD------PETTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~------~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      ...+|||+||||+++++.++||+||++|+++||||++...      +.+++.|+.|++||+||+||.+|..||..
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~   87 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ   87 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            3567999999999999999999999999999999998653      34678899999999999999999999975

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.79  E-value=6.5e-21  Score=147.68  Aligned_cols=65  Identities=28%  Similarity=0.378  Sum_probs=59.5

Q ss_pred             cCCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           69 ADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        69 ~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ..+||+||||+.+|  +.++||+|||+|++++|||++++    .+.|++|++||+||+|+.+|+.||.++.
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd~~kR~~YD~~~~   73 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            45899999999998  78899999999999999999876    3579999999999999999999998754

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.73  E-value=5.3e-19  Score=127.72  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=59.7

Q ss_pred             CcCCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024126           68 IADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG  137 (272)
Q Consensus        68 ~~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~~~~i~~Ay~vLsd~~~R~~YD~~~~  137 (272)
                      ...+||+||||++++  +.++||+|||++++++|||++++    .+.|++||+||++|+|+.+|..||..++
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            346899999999987  99999999999999999999866    4679999999999999999999998643

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3.4e-18  Score=122.80  Aligned_cols=66  Identities=20%  Similarity=0.361  Sum_probs=57.4

Q ss_pred             CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcCccccchhccc
Q 024126           70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDP-----ETTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        70 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~-----~~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      .|||+||||+++  ++.++||+||+++++++|||+..+.+     .+.+.|..|++||+||+||.+|+.|+..
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            389999999985  55899999999999999999976532     2567889999999999999999999863

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=2e-17  Score=124.28  Aligned_cols=66  Identities=24%  Similarity=0.427  Sum_probs=59.6

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcCccccchh
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSDPVQRMVY  132 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~~~~~~~~i~~Ay~vLsd~~~R~~Y  132 (272)
                      +...++|++|||...++.++||+|||++++++|||++++..   .+++.|+.|++||++|+||.+|..|
T Consensus        30 ~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          30 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            44567899999999999999999999999999999987643   3678999999999999999999988

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.1e-17  Score=120.06  Aligned_cols=66  Identities=14%  Similarity=0.121  Sum_probs=57.7

Q ss_pred             CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhccc
Q 024126           67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEI  135 (272)
Q Consensus        67 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~~~~i~~Ay~vLsd~~~R~~YD~~  135 (272)
                      ...+++|+||||+.+++.+|||+|||+|+++||||+++++. .+++.|+.|++||++|++   +..||..
T Consensus        13 ~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~   79 (88)
T d1iura_          13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQN   79 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSS
T ss_pred             hHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhcc
Confidence            34579999999999999999999999999999999998765 478999999999999975   5556654

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

Probab=99.40  E-value=4.2e-14  Score=97.60  Aligned_cols=62  Identities=32%  Similarity=0.749  Sum_probs=55.2

Q ss_pred             CccccCcccccccCcccCCCCcceeecccccceEEccC-CCCHHHHHHHHHhCcccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q-~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      ..+|||+..|+|||.|..++|.+|.++++.|.++++.+ ....+.+.+|++.|||+||+|++.
T Consensus         2 ~~~~VD~~~CigCg~C~~~cP~~f~~~~~~~~~~~~~~~~~~c~~c~~c~~~CP~~aI~~~e~   64 (64)
T d1fxra_           2 RKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWEDE   64 (64)
T ss_dssp             CEEEECTTTCCCCCHHHHHCTTTEEEETTTTEEEESCTTSSCHHHHHHHHHHCTTCCEEEECC
T ss_pred             CeEEEchhhCccCCCccccCcCeEEEecCCCeeeeeccCCCcchhHHHHHhcCCcccEEEEeC
Confidence            45799999999999999999999999988788988877 455689999999999999999763

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

Probab=99.20  E-value=2.1e-12  Score=93.12  Aligned_cols=62  Identities=31%  Similarity=0.574  Sum_probs=53.2

Q ss_pred             CccccCcccccccCcccCCCCcceeecccccceEEccC---------CCCHHHHHHHHHhCcccccccccch
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q---------~g~~e~i~~Av~~CP~~aI~~~~~~  216 (272)
                      ..++||+..|||||.|..++|++|.++++ |.+.+..+         ....+.+++|+++|||+||++++.+
T Consensus         2 ~~v~VD~~~CigCg~C~~~cP~~f~~~~d-g~~~~~~~~~~~~~~v~~~~~~~~~~aa~~CP~~AI~v~d~p   72 (81)
T d1iqza_           2 KYTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEP   72 (81)
T ss_dssp             CEEEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESSC
T ss_pred             cEEEEeHHHCcCcChHhHhCchheeEcCC-CeEEEeecCCcCcccCCHHHHHHHHHHHHhCCcccEEEEeCC
Confidence            35789999999999999999999999877 88887754         2235789999999999999998876

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=1.1e-11  Score=83.72  Aligned_cols=58  Identities=36%  Similarity=0.704  Sum_probs=51.7

Q ss_pred             ccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      .+.+|...|+|||.|..++|++|.++++ |.+.+..+.++...+..++..||++||++.
T Consensus         2 rv~iD~~~C~~Cg~C~~~cP~~~~~~~~-g~~~~~~~~~~c~~c~~c~~~CP~~AI~ie   59 (59)
T d1vjwa_           2 KVRVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETDLPCAKDAADSCPTGAISVE   59 (59)
T ss_dssp             BCEECTTTCCCCCHHHHHCTTTEEECTT-SSEEESCSBCCCTHHHHHHHHCTTCCEEC-
T ss_pred             EEEEeHHHCCCCCCChHhCchheEEccc-eeeEEecChHHCcCcCcccCccCcccEEeC
Confidence            4678999999999999999999999887 898888877777889999999999999873

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=99.08  E-value=1.8e-11  Score=82.48  Aligned_cols=56  Identities=34%  Similarity=0.739  Sum_probs=45.3

Q ss_pred             cccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR  212 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~  212 (272)
                      ++||+ .|||||.|..++|++|.++++.+...+..+....+.+.++++.|||+||.+
T Consensus         2 v~v~e-~CigCg~C~~~CP~~~~~~~~g~~~~~~~~~~~~~~c~~c~~~CP~~AIs~   57 (58)
T d1fxda_           2 IEVND-DCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVR   57 (58)
T ss_dssp             EEECT-TCCCCCHHHHHCTTTEEECSSSSSEEESCTTCCCHHHHHHHHHCTTCCEEE
T ss_pred             eeECc-cCcChhhHHHHcChhheEcCCCCEEEEecCCCCcHHHHHHhhcCChhcEEC
Confidence            46674 699999999999999999888344444445566678999999999999975

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.06  E-value=1.1e-11  Score=85.62  Aligned_cols=60  Identities=30%  Similarity=0.580  Sum_probs=49.6

Q ss_pred             CccccCcccccccCcccCCCCcceeecccccceEEccCC-CC---HHHHHHHHHhCccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQC-GI---NEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~-g~---~e~i~~Av~~CP~~aI~~~~  214 (272)
                      +.+.+|...|++||.|..++|++|.++++ |.+.++.+. .+   ...+.++++.||++||++.+
T Consensus         2 ~ki~vD~~~Ci~Cg~C~~~CP~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~c~~~CP~~AI~i~e   65 (66)
T d1sj1a_           2 WKVSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE   65 (66)
T ss_dssp             EEEEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             eEEEEeHHHCCCcChhhhhCCceEEEccc-CceEeeccccCChHHHhhhCHhhccCCcccEEEEe
Confidence            45789999999999999999999999887 777766541 12   34678999999999999865

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Archaeal ferredoxins
domain: Ferredoxin
species: Archaeon Sulfolobus sp. [TaxId: 2288]

Probab=97.23  E-value=4.9e-06  Score=61.43  Aligned_cols=60  Identities=30%  Similarity=0.401  Sum_probs=40.0

Q ss_pred             CccccCcccccccCcccCCCC-cceeeccccc------ceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFG------RARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g------~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      ..+.+|...|++|+.|..+|| +++.+.+..+      .+..+. ......+..+++.||++||.+..
T Consensus        36 ~~~~iD~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~i~-~~~C~~Cg~C~~~CP~~AI~~~~  102 (103)
T d1xera_          36 TIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVN-EQACIFCMACVNVCPVAAIDVKP  102 (103)
T ss_dssp             SSEEEETTTCCCCCHHHHHCTTCCCEEEECTTCSSCSEEEECTT-GGGCCCCCHHHHHCTTCCEEECC
T ss_pred             cEEEECHHHCcCcCcccccCcccceeeeccccccccccceeEec-cccCCCcChHHhhcCccceEeeC
Confidence            346789999999999999998 5555543211      122221 12223445899999999999754

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, second domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.12  E-value=8.1e-06  Score=57.64  Aligned_cols=61  Identities=20%  Similarity=0.333  Sum_probs=38.0

Q ss_pred             CCccccCcccccccCcccCCCCcce---e--ecccccceEEccC------CCCHHHHHHHHHhCcccccccc
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAPEVF---K--IEEDFGRARVYNQ------CGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap~vF---~--~e~d~g~a~v~~q------~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      ...+.+|..+||+|+.|..+||..-   .  +....+...+...      ......+...++.|||+||...
T Consensus        11 ~~~i~iD~~kCI~C~~Cv~aCp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAi~~k   82 (83)
T d3c8ya3          11 SKSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEK   82 (83)
T ss_dssp             SSSEEEEGGGCCCCCHHHHHHHHHHSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEEC
T ss_pred             CCCEEEchhHCCCCchHHHhhcccccccceeeeccccceEEcccccccccccccccCCHHHhhCCCCccccc
Confidence            4557889999999999999998431   1  1111122222111      1112235579999999999754

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase larger subunit, N-domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=97.03  E-value=8.4e-06  Score=58.05  Aligned_cols=57  Identities=25%  Similarity=0.434  Sum_probs=37.3

Q ss_pred             ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT  213 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~v-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~  213 (272)
                      .+.+|...|++||.|..+||.. +.++++.+.. +++ ....-.....+..||++||+..
T Consensus        26 ~~~id~~~Ci~C~~Cv~~Cp~~ai~~~~~~~~~-~~~-~~~C~~Cg~C~~~CP~~AI~~~   83 (85)
T d1hfel2          26 FVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHS-IPH-IEACINCGQCLTHCPENAIYEA   83 (85)
T ss_dssp             SEEECTTTCCCCCHHHHHCTTCCCBCCTTSCCB-CCC-GGGCCCCCTTGGGCTTCCEEES
T ss_pred             eEEEcHHHCCCchhHHHHCCccCEEeecCCceE-eCC-hhHCCCcChhhhhCCccceEec
Confidence            4567999999999999999943 4554432222 222 1111223478999999999854

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Clostridium acidurici [TaxId: 1556]

Probab=96.92  E-value=0.00029  Score=45.54  Aligned_cols=51  Identities=24%  Similarity=0.421  Sum_probs=34.8

Q ss_pred             ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccc
Q 024126          157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH  211 (272)
Q Consensus       157 ~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~  211 (272)
                      |+....|++||.|..++| +.+.++++  ...+..  .........+..||++||.
T Consensus         2 ~vi~e~C~~Cg~C~~~Cp~~ai~~~~~--~~~i~~--~~C~~Cg~C~~~CP~~AI~   53 (55)
T d2fdna_           2 YVINEACISCGACEPECPVNAISSGDD--RYVIDA--DTCIDCGACAGVCPVDAPV   53 (55)
T ss_dssp             EEECTTCCCCCTTGGGCTTCCEECCSS--SCEECT--TTCCCCCHHHHTCTTCCEE
T ss_pred             EEeCcCCCChhhHHHhcCccceEcCCc--eEEECH--HHCCCCCChhcccCCCCcC
Confidence            345567999999999999 55666553  333221  1223445899999999996

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Bacillus schlegelii [TaxId: 1484]

Probab=96.90  E-value=0.00052  Score=47.46  Aligned_cols=55  Identities=22%  Similarity=0.377  Sum_probs=37.8

Q ss_pred             ccCccccccc--CcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          157 FVDEFSCIGC--KNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       157 ~vDe~~Cigc--g~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      +|+...|++|  |.|..+|| +.+.+++  +... ++. .........+..||++||.+...
T Consensus         2 yvv~~~C~~C~~g~C~~~CP~~Ai~~~~--~~~~-id~-~~C~~Cg~C~~~CP~~AI~~~~~   59 (77)
T d1bc6a_           2 YVITEPCIGTKDASCVEVCPVDCIHEGE--DQYY-IDP-DVCIDCGACEAVCPVSAIYHEDF   59 (77)
T ss_dssp             EECCSTTTTCCCCSSTTTCTTCCEEECS--SSEE-ECT-TTCCSCCSHHHHSGGGSSEETTT
T ss_pred             EEcCccCCCccCcchhhhCCCCCeeccC--CEEE-ECh-hHCcCcCccchhCCccccCCCcc
Confidence            5667889999  89999999 4466655  3333 322 12233448899999999987554

>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Adenylylsulfate reductase B subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.89  E-value=4.8e-05  Score=59.54  Aligned_cols=63  Identities=21%  Similarity=0.433  Sum_probs=44.4

Q ss_pred             cccCcccccccCc-----ccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024126          156 VFVDEFSCIGCKN-----CNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS  219 (272)
Q Consensus       156 v~vDe~~Cigcg~-----C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~  219 (272)
                      .+||...|+|||.     |..+|| +.+.++++.+++.++.. ...-.+..++..||++||.+....++.
T Consensus         2 ~~id~~~C~gCg~c~~~~C~~~CP~~ai~~~~~~~~~~~~d~-~~C~~C~~C~~~CP~~Ai~~~~~~d~~   70 (149)
T d1jnrb_           2 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREP-DMCWECYSCVKMCPQGAIDVRGYVDYS   70 (149)
T ss_dssp             EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCG-GGCCCCCHHHHHCTTCCEEECCCTTTC
T ss_pred             CEEcchhCCCCCCCCcchHHHhCCcccEEecCCCcEEEEecc-ccCCCCccccCcCchheeeeccccccc
Confidence            4689999999995     888898 55777776344544432 122345689999999999987654443

>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Formate dehydrogenase N, iron-sulfur (beta) subunit
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00032  Score=59.22  Aligned_cols=67  Identities=21%  Similarity=0.404  Sum_probs=47.5

Q ss_pred             CCccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhhhhH
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQLSLL  221 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~~l  221 (272)
                      .+.+.+|+..||||+.|...|| ++-.++.+.|.+..-+  .-.+.+.     .++.+||++||.+.+.+|+...
T Consensus       122 ~G~V~id~~~CiGC~~C~~ACPyga~~~~~~~~~~~KC~--~C~~r~~~G~~PaCv~~CP~~Al~fG~~~e~~~~  194 (244)
T d1kqfb1         122 NGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCT--LCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLEL  194 (244)
T ss_dssp             TSCEEECGGGCCCCCHHHHHCTTCCCEEETTTTEEECCC--TTHHHHTTTCCCHHHHHCTTSCEEEEEHHHHHHH
T ss_pred             CCcEEEccccccchhhHhhcCCCCCcEeccccCcceecc--cchhhhcCCCCcchHHhcccCCEEEecHHHHHHH
Confidence            4668899999999999999999 5555665545543221  1122222     5899999999999998875443

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Chromatium vinosum [TaxId: 1049]

Probab=96.86  E-value=0.0006  Score=47.50  Aligned_cols=53  Identities=25%  Similarity=0.513  Sum_probs=34.5

Q ss_pred             cCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHH------HHHHHhCccccccccc
Q 024126          158 VDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFV------QQAIESCPVDCIHRTS  214 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i------~~Av~~CP~~aI~~~~  214 (272)
                      ++...|++|+.|..+|| +...+++  +...+...  .....      -..+..||++||.+..
T Consensus         3 iitd~Ci~Cg~C~~~CP~~AI~~~~--~~~~id~~--~C~~C~~~~~~G~C~~vCP~~AI~~~~   62 (80)
T d1blua_           3 MITDECINCDVCEPECPNGAISQGD--ETYVIEPS--LCTECVGHYETSQCVEVCPVDCIIKDP   62 (80)
T ss_dssp             EECTTCCCCCTTGGGCTTCCEEECS--SSEEECGG--GCCTTTTTCSSCHHHHHCTTCCEEECT
T ss_pred             EeCcCCCChHHHHHHChhcchhhcC--cceEEccc--cccCCCCCCCCCccccccCCCCccCCC
Confidence            34567999999999999 4555544  33333221  00011      1699999999998754

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Thauera aromatica [TaxId: 59405]

Probab=96.59  E-value=0.0019  Score=44.80  Aligned_cols=54  Identities=19%  Similarity=0.423  Sum_probs=33.8

Q ss_pred             cccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHH------HHHHHhCccccccccc
Q 024126          156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFV------QQAIESCPVDCIHRTS  214 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i------~~Av~~CP~~aI~~~~  214 (272)
                      +++. ..|++||.|..+||. ...+++  +...+...  .....      -..+..||++||....
T Consensus         2 ~~it-d~Ci~Cg~C~~~CP~~AI~~~~--~~~~id~~--~C~~C~~~~~~G~C~~vCP~~AI~~~~   62 (80)
T d1rgva_           2 LYIN-DDCTACDACVEECPNEAITPGD--PIYVIDPT--KCSECVGAFDEPQCRLVCPADCIPDNP   62 (80)
T ss_dssp             BCCC-SCCCCCCTTTTTCTTCCEECCS--SSCEECTT--TCCTTTTTCSSCHHHHHCSSCCCCBCG
T ss_pred             cEec-ccCcCCcCHHHHHHhCcccccc--ccccccCC--CCcCCCCcCCCCcchhhccccCeeCCC
Confidence            3444 359999999999994 344443  34433222  01111      1689999999998754

>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Transhydroxylase beta subunit, BthL, N-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=96.58  E-value=0.00043  Score=56.32  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=42.8

Q ss_pred             CCccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHH---------HHHHHhCcccccccccch
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFV---------QQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i---------~~Av~~CP~~aI~~~~~~  216 (272)
                      .+.+.+|+..||||+.|...|| ++-.++.+.|.+.--+  .=.+.+         =..+.+||++||++.+.+
T Consensus        89 ~G~V~id~~kCiGC~~C~~aCPy~a~~~~~~~~~~~KC~--~C~~r~~~~~~~g~~PaCv~~Cp~~a~~f~~~~  160 (195)
T d1vlfn2          89 DGIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVAQKCT--MCAHLLDDESWAPKMPRCAHNCGSFVYEFLKTT  160 (195)
T ss_dssp             TSCEEECTTTTTTCGGGGGGCSSCCCEEETTTTEEECCC--TTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEEC
T ss_pred             ccceeeehhhccccchhhcCCCCCCeEcccccCCccccC--cchhhhhccccccchhhhhhhCcHhheecCCCC
Confidence            4678899999999999999999 5555665535442111  111222         268999999999986544

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Peptostreptococcus asaccharolyticus [TaxId: 1258]

Probab=96.43  E-value=0.0011  Score=42.63  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=34.0

Q ss_pred             cCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024126          158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      +....|++|+.|..++|..- ++.+ +...+...  ........+..||++||+..+
T Consensus         3 ~i~d~C~~C~~C~~~CP~~a-i~~~-~~~~i~~~--~C~~Cg~C~~~CP~~AI~~ed   55 (55)
T d1dura_           3 VINDSCIACGACKPECPVNC-IQEG-SIYAIDAD--SCIDCGSCASVCPVGAPNPED   55 (55)
T ss_dssp             EECTTCCCCCCSGGGCTTCC-EECS-SSCEECTT--TCCCCCHHHHHCTTCCEEECC
T ss_pred             EeCccCcChhHHHhhCCcCe-EeCC-ceeEEChh--HCcCCCChhhhCCcCcCCCcC
Confidence            34457999999999999432 2222 33322221  222345899999999998754

>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: NADH-quinone oxidoreductase chain 9, Nqo9
species: Thermus thermophilus [TaxId: 274]

Probab=96.33  E-value=0.00014  Score=57.14  Aligned_cols=56  Identities=23%  Similarity=0.346  Sum_probs=35.5

Q ss_pred             CcccccccCcccCCCCc-ceeecccc---------cce----EEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          159 DEFSCIGCKNCNNVAPE-VFKIEEDF---------GRA----RVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       159 De~~Cigcg~C~~~ap~-vF~~e~d~---------g~a----~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      |..+||+|+.|..+||. ...+....         +..    ..+ ..+....+-.+++.||++||.+...
T Consensus        24 ~~ekCI~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~C~~CG~Cve~CPt~AI~~~~~   93 (154)
T d2fug91          24 GLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEI-NMLRCIFCGLCEEACPTGAIVLGYD   93 (154)
T ss_dssp             SCBSCCCCTHHHHHCSSCCEEEEEEECCSSSCSBSSSEEEEEEEE-ETTTCCCCTHHHHHCSSSCEEECSC
T ss_pred             CcccCcCCCcHHhhcCCcceeccccccccccccccccccceeEEe-ccccCCCCCCchhhCCCCeEeccCc
Confidence            66789999999999984 33332110         111    111 1333444558999999999998754

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Thermus thermophilus [TaxId: 274]

Probab=96.27  E-value=0.00095  Score=46.09  Aligned_cols=55  Identities=20%  Similarity=0.272  Sum_probs=37.6

Q ss_pred             ccCccccccc--CcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024126          157 FVDEFSCIGC--KNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA  215 (272)
Q Consensus       157 ~vDe~~Cigc--g~C~~~ap~-vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~  215 (272)
                      +++...|++|  +.|..++|. .+.+++  +...+..  .........+..||++||++.+.
T Consensus         2 ~vv~d~C~~C~~~~C~~~CP~~AI~~~~--~~~~id~--~~Ci~Cg~C~~~CP~~AI~~~~~   59 (77)
T d1h98a_           2 HVICEPCIGVKDQSCVEVCPVECIYDGG--DQFYIHP--EECIDCGACVPACPVNAIYPEED   59 (77)
T ss_dssp             EEECGGGTTTCCCHHHHHCTTCCEEECS--SSEEECT--TTCCCCCTHHHHCTTCCEEEGGG
T ss_pred             EEeCccCCCcCCchhHHHCCCCceEccC--cEEEEcH--HHCCCcCcCccccCcCccCCCcc
Confidence            4667789999  789999994 455555  3443321  12233448999999999987553

>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: NADH-quinone oxidoreductase chain 3, Nqo3, domain 2
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.00076  Score=52.73  Aligned_cols=58  Identities=24%  Similarity=0.350  Sum_probs=37.8

Q ss_pred             CccccCcccccccCcccCCCCcc-----eeecccccceEEccC--CCCHHHHHHHHHhCcccccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ--CGINEFVQQAIESCPVDCIH  211 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~v-----F~~e~d~g~a~v~~q--~g~~e~i~~Av~~CP~~aI~  211 (272)
                      ..+..|..+||.|+.|+.+|.++     +.+........+...  ..+...+-++++.|||+||.
T Consensus        77 p~i~~d~~kCI~C~rCvr~C~ev~g~~~l~~~~rG~~~~i~~~~~~~~c~~cG~Cv~vCPtGAL~  141 (151)
T d2fug34          77 PFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALL  141 (151)
T ss_dssp             SSSCEECSCCCCCCHHHHHHHHTTCCCCCCCBSCGGGCBCCCSSTTCCSSCCTHHHHHCSSSSSB
T ss_pred             CeEEecCCCCCcCchHHhhhhhccCCceEEEeccccceEEccCCCCCCChhhcCHHhcCcccccc
Confidence            45778999999999999988643     444333122222211  11234556899999999986

>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Dihydropyrimidine dehydrogenase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.06  E-value=7.2e-05  Score=60.09  Aligned_cols=60  Identities=23%  Similarity=0.433  Sum_probs=38.7

Q ss_pred             cccCcccccccCcccCCCCcc-ee-ecccccceEEccCCCCHHHHHHHHHhCcc-cccccccch
Q 024126          156 VFVDEFSCIGCKNCNNVAPEV-FK-IEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHRTSAQ  216 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~v-F~-~e~d~g~a~v~~q~g~~e~i~~Av~~CP~-~aI~~~~~~  216 (272)
                      ..+|...|++|+.|..+||.. +. +..+.+....+. ..+...+-.+++.||+ +||.+++..
T Consensus       102 a~id~~~Ci~C~~C~~~Cp~~ai~~i~~~~~~~~~v~-~~~C~gCg~C~~vCP~~~aI~mv~~~  164 (173)
T d1gtea5         102 AVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV-TDTCTGCTLCLSVCPIIDCIRMVSRT  164 (173)
T ss_dssp             EEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEE-CTTCCCCCHHHHHCSSTTTEEEEECC
T ss_pred             EEEEchhCCCchHHHHhhhhCCEEEEEecCCCceEec-hhhCCCcChhHhhCCCCCcEEEEeCC
Confidence            358999999999999999833 22 222212222221 2233345579999995 899998764

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Photosystem I iron-sulfur protein PsaC
species: Synechococcus elongatus [TaxId: 32046]

Probab=95.98  E-value=8.3e-05  Score=51.94  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=35.1

Q ss_pred             cCcccccccCcccCCCCc-ceeecccc---cceEEc-cCCCCHHHHHHHHHhCccccccccc
Q 024126          158 VDEFSCIGCKNCNNVAPE-VFKIEEDF---GRARVY-NQCGINEFVQQAIESCPVDCIHRTS  214 (272)
Q Consensus       158 vDe~~Cigcg~C~~~ap~-vF~~e~d~---g~a~v~-~q~g~~e~i~~Av~~CP~~aI~~~~  214 (272)
                      .+.++|++|+.|..+||. ...+..+.   +..... ....+.......++.||++||.+..
T Consensus         5 ~~~d~Ci~Cg~Cv~~Cp~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~   66 (80)
T d1jb0c_           5 KIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV   66 (80)
T ss_dssp             EEETTCCCCCHHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEE
T ss_pred             ccCCCCcCccCHHHhCCccceEeeccccccccccceecchhhCcCCCCccccCCCCCceeEe
Confidence            345689999999999984 34443321   111111 1122223445799999999998743

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.49  E-value=0.002  Score=47.17  Aligned_cols=56  Identities=21%  Similarity=0.352  Sum_probs=37.3

Q ss_pred             ccCccccccc--CcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024126          157 FVDEFSCIGC--KNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       157 ~vDe~~Cigc--g~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~  216 (272)
                      |+....|++|  +.|..+|| +.+.+.+  +... ++. .....+...+..||++||.+.+..
T Consensus         2 yvi~~~C~~C~~~~C~~~CP~~ai~~~~--~~~~-id~-~~Ci~Cg~C~~~CP~~ai~~~~~~   60 (106)
T d7fd1a_           2 FVVTDNCIKCKYTDCVEVCPVDCFYEGP--NFLV-IHP-DECIDCALCEPECPAQAIFSEDEV   60 (106)
T ss_dssp             EEECGGGTTTCCCHHHHHCTTCCEEECS--SCEE-ECT-TTCCCCCTTGGGCTTCCEEEGGGC
T ss_pred             EEcCccCCCCCCCccccccCCCcccccC--CEEE-Ech-HHCCCCCCccccCCCCCccccccc
Confidence            4556689999  78999999 4455544  3433 322 122334478899999999986654

>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Respiratory nitrate reductase 1 beta chain
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.0026  Score=58.87  Aligned_cols=62  Identities=15%  Similarity=0.159  Sum_probs=41.9

Q ss_pred             CCccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccch
Q 024126          153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQ  216 (272)
Q Consensus       153 ~~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~  216 (272)
                      .+.+.+|...|+||+.|...|| +.-.++.+.|.+.--.-  -.+.+.     .++.+||++||.+.+..
T Consensus       207 ~G~v~id~~~CigC~~C~~aCPy~~~~~~~~~~~~~KC~~--C~~r~~~G~~paCv~~Cp~~A~~~g~~~  274 (509)
T d1y5ib1         207 DGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIF--CYPRIEAGQPTVCSETCVGRIRYLGVLL  274 (509)
T ss_dssp             TCCEEECTTTCCCCCCHHHHCTTCCEEEETTTTEEEECCT--THHHHTTTCCCHHHHTCTTCCEEEEEEE
T ss_pred             CCcEEEchhhccchHHHHhhCCCCCeEecCCCCceeeccc--chhHHhcCCCChhhhhCcHhhhhhchhc
Confidence            4567899999999999999999 44444544455432211  112222     48999999999876543

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
species: Desulfovibrio africanus [TaxId: 873]

Probab=92.66  E-value=0.008  Score=44.23  Aligned_cols=20  Identities=30%  Similarity=0.569  Sum_probs=17.1

Q ss_pred             cccCcccccccCcccCCCCc
Q 024126          156 VFVDEFSCIGCKNCNNVAPE  175 (272)
Q Consensus       156 v~vDe~~Cigcg~C~~~ap~  175 (272)
                      ..+|...||+||.|..+||.
T Consensus        14 pv~d~~~Ci~Cg~C~~vCP~   33 (117)
T d2c42a5          14 PQWVPENCIQCNQCAFVCPH   33 (117)
T ss_dssp             EEECTTTCCCCCHHHHHCSS
T ss_pred             CEeCchhcCCCcChhhhCch
Confidence            45588899999999999994

>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Tungsten containing formate dehydrogenase, small subunit
species: Desulfovibrio gigas [TaxId: 879]

Probab=92.45  E-value=0.024  Score=46.15  Aligned_cols=60  Identities=8%  Similarity=0.158  Sum_probs=40.0

Q ss_pred             cccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhhhhH
Q 024126          160 EFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQLSLL  221 (272)
Q Consensus       160 e~~Cigcg~C~~~ap-~vF~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~~l  221 (272)
                      ...|+||+.|...|| ++-.++.+.|.+.--+  .=.+.+.     .++.+||++||.+.+.+|+..+
T Consensus       107 ~~~c~gc~~C~~aCPy~~~~~~~~~~~~~KCd--~C~~R~~~G~~PaCV~~CP~~Al~fGd~~d~~~~  172 (214)
T d1h0hb_         107 TKDLEDYESVISACPYDVPRKVAESNQMAKCD--MCIDRITNGLRPACVTSCPTGAMNFGDLSEMEAM  172 (214)
T ss_dssp             GGGCSCHHHHHHHCTTCCCEECTTSSCEECCC--TTHHHHTTTCCCHHHHHCSSSCEEEEEHHHHHHH
T ss_pred             cccccCcceecccCCCCCceecccCCccEeCc--ccHHHHhCCCCCCceeecccCCEEEeehhhhHHH
Confidence            336999999999999 4445555546543221  1123332     5999999999999988776543

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.75  E-value=0.14  Score=36.74  Aligned_cols=29  Identities=21%  Similarity=0.584  Sum_probs=22.3

Q ss_pred             CccccCcccccccCcccCCCC-cceeeccc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEED  182 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap-~vF~~e~d  182 (272)
                      ..+.+|...|+|||.|..+|| +...++++
T Consensus        30 ~~~~id~~~Ci~Cg~C~~~CP~~ai~~~~~   59 (106)
T d7fd1a_          30 NFLVIHPDECIDCALCEPECPAQAIFSEDE   59 (106)
T ss_dssp             SCEEECTTTCCCCCTTGGGCTTCCEEEGGG
T ss_pred             CEEEEchHHCCCCCCccccCCCCCcccccc
Confidence            456789999999999999999 44445443

>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: DsrB insert domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.67  E-value=0.072  Score=34.97  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=17.7

Q ss_pred             CccccCcccccccCcccCCCCc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPE  175 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~  175 (272)
                      +.+.+|...|+|||.|...+|.
T Consensus        36 g~v~id~~~CigCg~C~~aCP~   57 (65)
T d3c7bb1          36 KTIKVDVEKCMYCGNCYTMCPG   57 (65)
T ss_dssp             TEEEECTTTCCCCCHHHHHCTT
T ss_pred             CcEEEeCCcCcccChhhhhCCc
Confidence            3466788889999999988884

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Bacillus schlegelii [TaxId: 1484]

Probab=82.27  E-value=0.11  Score=35.06  Aligned_cols=22  Identities=36%  Similarity=0.895  Sum_probs=18.9

Q ss_pred             CccccCcccccccCcccCCCCc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPE  175 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~  175 (272)
                      ..+.+|...|+|||.|..+||.
T Consensus        30 ~~~~id~~~C~~Cg~C~~~CP~   51 (77)
T d1bc6a_          30 DQYYIDPDVCIDCGACEAVCPV   51 (77)
T ss_dssp             SSEEECTTTCCSCCSHHHHSGG
T ss_pred             CEEEEChhHCcCcCccchhCCc
Confidence            3467899999999999999994

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase larger subunit, N-domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=81.18  E-value=0.34  Score=32.99  Aligned_cols=23  Identities=30%  Similarity=0.608  Sum_probs=19.0

Q ss_pred             CccccCcccccccCcccCCCCcc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEV  176 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~v  176 (272)
                      ..+.+|...|++||.|..+||..
T Consensus        56 ~~~~~~~~~C~~Cg~C~~~CP~~   78 (85)
T d1hfel2          56 PHSIPHIEACINCGQCLTHCPEN   78 (85)
T ss_dssp             CCBCCCGGGCCCCCTTGGGCTTC
T ss_pred             ceEeCChhHCCCcChhhhhCCcc
Confidence            34567888999999999999953

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Thermus thermophilus [TaxId: 274]

Probab=80.55  E-value=0.15  Score=34.44  Aligned_cols=23  Identities=26%  Similarity=0.704  Sum_probs=19.3

Q ss_pred             CccccCcccccccCcccCCCCcc
Q 024126          154 DHVFVDEFSCIGCKNCNNVAPEV  176 (272)
Q Consensus       154 ~~v~vDe~~Cigcg~C~~~ap~v  176 (272)
                      ..+.+|...|+|||.|..+||..
T Consensus        30 ~~~~id~~~Ci~Cg~C~~~CP~~   52 (77)
T d1h98a_          30 DQFYIHPEECIDCGACVPACPVN   52 (77)
T ss_dssp             SSEEECTTTCCCCCTHHHHCTTC
T ss_pred             cEEEEcHHHCCCcCcCccccCcC
Confidence            34678999999999999999943

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Peptostreptococcus asaccharolyticus [TaxId: 1258]

Probab=80.06  E-value=0.21  Score=31.27  Aligned_cols=21  Identities=38%  Similarity=0.770  Sum_probs=17.9

Q ss_pred             ccccCcccccccCcccCCCCc
Q 024126          155 HVFVDEFSCIGCKNCNNVAPE  175 (272)
Q Consensus       155 ~v~vDe~~Cigcg~C~~~ap~  175 (272)
                      ...+|...|++||.|..++|.
T Consensus        28 ~~~i~~~~C~~Cg~C~~~CP~   48 (55)
T d1dura_          28 IYAIDADSCIDCGSCASVCPV   48 (55)
T ss_dssp             SCEECTTTCCCCCHHHHHCTT
T ss_pred             eeEEChhHCcCCCChhhhCCc
Confidence            345788899999999999994