Citrus Sinensis ID: 024138

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVMYVKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPDSSMTGRQSCGPDFSASRCMSQCISMTASVLLSMRALD
cccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHcccccccHHHHHHHHHcccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHcccccEEEEEEcccEEEEEccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccHHHHHHccccc
cHHHHHHHcHHHHcccccccccccccccccccccccccEEEEEEEccccccccccccccccccccHHHHHHccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccEEEEEEHHHHHHHHHHHHHHHHHHHHcccccccccHHcccHccHHHHHHHHHHHcHHHHHcHHccc
MAAEMALVkpiskfstiatttkprfsypkatctslstrfctiKMSATSEQAAAAtaqkpskksnktaiketlltprfyttdfDEMETLFNTEINKKLNQAEFEALLQEFKtdynqthfvRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVMYVKYTFFKPKFIFYATYLSEKIGYWRYITIYRHlkanpdssmtgrqscgpdfsasrcMSQCISMTASVLLSMRALD
maaemalvkpiskfstiatttkprfsypkatctsLSTRFCTIKMSATSEQAAaataqkpskksnktaiketlltprfyttdFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVMYVKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPDSSMTGRQSCGPDFSASRCMSQCISMTASVLLSMRALD
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIkmsatseqaaaataqkpskksNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVMYVKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPDSSMTGRQSCGPDFSASRCMSQCISMTASVLLSMRALD
**********ISKFSTIATTTKPRFSYPKATCTSLSTRFCTIK*************************KETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVMYVKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLK************************QCISMT***********
********KPISK*********************************************************TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVMYVKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPDSSMTGRQSCGPDFSASRCMSQCISMTASVLLSMRA**
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSA*******************TAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVMYVKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPDSSMTGRQSCGPDFSASRCMSQCISMTASVLLSMRALD
*****A*VK**S*FST***TTKPRFSYPKATCTSLSTRFCTIKMSAT*****************KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVMYVKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPDSSMTGRQSCGPDFSASRCMSQCISMTASVLLSMR***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVMYVKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPDSSMTGRQSCGPDFSASRCMSQCISMTASVLLSMRALD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query272 2.2.26 [Sep-21-2011]
Q945B7 405 Magnesium-protoporphyrin N/A no 0.823 0.553 0.764 1e-95
Q6SJV8 405 Magnesium-protoporphyrin N/A no 0.823 0.553 0.739 5e-91
Q9M591 409 Magnesium-protoporphyrin yes no 0.834 0.555 0.732 1e-89
Q5EFU4 417 Magnesium-protoporphyrin N/A no 0.852 0.556 0.674 5e-85
Q9AR22 407 Magnesium-protoporphyrin N/A no 0.746 0.498 0.640 9e-76
Q9LD46 407 Magnesium-protoporphyrin N/A no 0.731 0.488 0.585 2e-65
P72584 358 Magnesium-protoporphyrin N/A no 0.658 0.5 0.592 3e-61
Q8YRZ2 358 Magnesium-protoporphyrin yes no 0.621 0.472 0.616 2e-60
Q118B4 358 Magnesium-protoporphyrin yes no 0.621 0.472 0.610 2e-60
Q6B8U1 349 Magnesium-protoporphyrin N/A no 0.639 0.498 0.594 1e-59
>sp|Q945B7|CRD1_EUPES Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1 Back     alignment and function desciption
 Score =  349 bits (895), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/246 (76%), Positives = 195/246 (79%), Gaps = 22/246 (8%)

Query: 1   MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPS 60
           MAAEMALVKPI+          P+F  P  T +S S    TIKMSATS+     TA KPS
Sbjct: 1   MAAEMALVKPIT----------PKFINPMRTFSSSSKF-STIKMSATSQSNTTTTATKPS 49

Query: 61  KKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVR 120
           KK NK  I ETLLTPRFYTTDFDEMETLFNTEINKKLNQ+EFEALLQEFKTDYNQTHFVR
Sbjct: 50  KKGNKKEINETLLTPRFYTTDFDEMETLFNTEINKKLNQSEFEALLQEFKTDYNQTHFVR 109

Query: 121 NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR 180
           NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR
Sbjct: 110 NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR 169

Query: 181 DEARHAGYECASKSVMYV-----------KYTFFKPKFIFYATYLSEKIGYWRYITIYRH 229
           DEARHAG+     S               KYTFFKPKFIFYATYLSEKIGYWRYITIYRH
Sbjct: 170 DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH 229

Query: 230 LKANPD 235
           LK NP+
Sbjct: 230 LKENPE 235
Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME).
Euphorbia esula (taxid: 3993)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 8EC: 1
>sp|Q6SJV8|CRD1_GOSHI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q9M591|CRD1_ARATH Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q5EFU4|CRD1_HORVU Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR22|CTH1_CHLRE Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2, chloroplastic OS=Chlamydomonas reinhardtii GN=CTH1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LD46|CRD1_CHLRE Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=CRD1 PE=2 SV=1 Back     alignment and function description
>sp|P72584|ACSF1_SYNY3 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=acsF1 PE=3 SV=1 Back     alignment and function description
>sp|Q8YRZ2|ACSF3_NOSS1 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=acsF3 PE=3 SV=1 Back     alignment and function description
>sp|Q118B4|ACSF_TRIEI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Trichodesmium erythraeum (strain IMS101) GN=acsF PE=3 SV=1 Back     alignment and function description
>sp|Q6B8U1|ACSF_GRATL Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Gracilaria tenuistipitata var. liui GN=acsF PE=3 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
TAIR|locus:2080560 409 CRD1 "COPPER RESPONSE DEFECT 1 0.834 0.555 0.692 3.7e-80
TAIR|locus:2080560 CRD1 "COPPER RESPONSE DEFECT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 171/247 (69%), Positives = 183/247 (74%)

Query:     1 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIXXXXXXXXXXX-XXXXXX 59
             MAAEMALVKPISKFS+      P+ S P    +    RF T+                  
Sbjct:     1 MAAEMALVKPISKFSS------PKLSNPSKFLSG--RRFSTVIRMSASSSPPPPTTATSK 52

Query:    60 XXXXNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFV 119
                  K  I+E+LLTPRFYTTDF+EME LFNTEINK LN+AEFEALLQEFKTDYNQTHFV
Sbjct:    53 SKKGTKKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFV 112

Query:   120 RNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 179
             RNKEFKEAADK+QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS
Sbjct:   113 RNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 172

Query:   180 RDEARHAGYECASKSVMYV-----------KYTFFKPKFIFYATYLSEKIGYWRYITIYR 228
             RDEARHAG+     S   +           KYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   173 RDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 232

Query:   229 HLKANPD 235
             HLK NP+
Sbjct:   233 HLKENPE 239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.132   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      272       251   0.00081  114 3  11 22  0.39    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.65u 0.12s 19.77t   Elapsed:  00:00:01
  Total cpu time:  19.65u 0.12s 19.77t   Elapsed:  00:00:01
  Start:  Tue May 21 01:28:16 2013   End:  Tue May 21 01:28:17 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015979 "photosynthesis" evidence=IEA
GO:0015995 "chlorophyll biosynthetic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0048529 "magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity" evidence=IEA;NAS;IMP
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003677 "DNA binding" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M591CRD1_ARATH1, ., 1, 4, ., 1, 3, ., 8, 10.73270.83450.5550yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.13.810.914
3rd Layer1.14.130.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI000236
magnesium protoporphyrin IX monomethyl ester (oxidative) cyclase (EC-1.14.13.81) (405 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VI0422
SubName- Full=Putative uncharacterized protein; (1365 aa)
• ••  • 0.760
grail3.0015033802
magnesium protoporphyrin IX methyltransferase (182 aa)
• •• •• 0.649
estExt_Genewise1_v1.C_LG_XVI3731
chlorophyll synthetase (EC-2.5.1.62) (329 aa)
  ••  • 0.544
estExt_fgenesh4_pg.C_LG_VI0825
SubName- Full=Putative uncharacterized protein; (372 aa)
  ••  • 0.540
eugene3.00120625
SubName- Full=Putative uncharacterized protein; (470 aa)
  ••  • 0.485
gw1.IV.2852.1
SubName- Full=Putative uncharacterized protein; (422 aa)
  ••  • 0.448
estExt_fgenesh4_pm.C_LG_XI0237
hypothetical protein (421 aa)
  ••  • 0.446
gw1.IX.3663.1
hypothetical protein (741 aa)
  ••  • 0.445
gw1.66.323.1
geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)
  •   • 0.445
gw1.4339.1.1
annotation not avaliable (413 aa)
  •   • 0.445

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
PLN02508 357 PLN02508, PLN02508, magnesium-protoporphyrin IX mo 1e-120
PRK13654 355 PRK13654, PRK13654, magnesium-protoporphyrin IX mo 1e-101
cd01047 323 cd01047, ACSF, Aerobic Cyclase System Fe-containin 2e-99
TIGR02029 337 TIGR02029, AcsF, magnesium-protoporphyrin IX monom 5e-90
CHL00185 351 CHL00185, ycf59, magnesium-protoporphyrin IX monom 2e-87
pfam02915137 pfam02915, Rubrerythrin, Rubrerythrin 3e-22
>gnl|CDD|178124 PLN02508, PLN02508, magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information 
 Score =  346 bits (890), Expect = e-120
 Identities = 151/187 (80%), Positives = 161/187 (86%), Gaps = 11/187 (5%)

Query: 60  SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFV 119
            +K  K AIKETLLTPRFYTTDFDEME LFNTEINK L+ AEFEALLQEFKTDYNQTHFV
Sbjct: 1   MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFV 60

Query: 120 RNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 179
           RN+EFK AADK+QGPLRQIF+EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIF+LMS
Sbjct: 61  RNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMS 120

Query: 180 RDEARHAGYECASKSVMYV-----------KYTFFKPKFIFYATYLSEKIGYWRYITIYR 228
           RDEARHAG+   + S   +           KYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct: 121 RDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFIFYATYLSEKIGYWRYITIYR 180

Query: 229 HLKANPD 235
           HL+ANPD
Sbjct: 181 HLQANPD 187

Length = 357
>gnl|CDD|237458 PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>gnl|CDD|153106 cd01047, ACSF, Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|131084 TIGR02029, AcsF, magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>gnl|CDD|177087 CHL00185, ycf59, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>gnl|CDD|217284 pfam02915, Rubrerythrin, Rubrerythrin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 272
PLN02508 357 magnesium-protoporphyrin IX monomethyl ester [oxid 100.0
PRK13654 355 magnesium-protoporphyrin IX monomethyl ester cycla 100.0
TIGR02029 337 AcsF magnesium-protoporphyrin IX monomethyl ester 100.0
CHL00185 351 ycf59 magnesium-protoporphyrin IX monomethyl ester 100.0
cd01047 323 ACSF Aerobic Cyclase System Fe-containing subunit 100.0
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 99.18
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 97.78
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 96.26
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 96.19
PF13668137 Ferritin_2: Ferritin-like domain 95.83
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 95.66
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 95.05
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 94.86
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 94.27
cd07908154 Mn_catalase_like Manganese catalase-like protein, 93.6
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 93.23
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 92.5
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 92.48
COG1633176 Uncharacterized conserved protein [Function unknow 92.19
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 90.85
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 89.37
cd07908154 Mn_catalase_like Manganese catalase-like protein, 89.23
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 88.72
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 86.61
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 86.37
PF03405330 FA_desaturase_2: Fatty acid desaturase; InterPro: 86.11
PRK127751006 putative trifunctional 2-polyprenylphenol hydroxyl 85.2
PRK09101376 nrdB ribonucleotide-diphosphate reductase subunit 85.08
PLN02492324 ribonucleoside-diphosphate reductase 84.4
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 84.26
PRK12759410 bifunctional gluaredoxin/ribonucleoside-diphosphat 80.23
PRK13967322 nrdF1 ribonucleotide-diphosphate reductase subunit 80.18
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information 
Probab=100.00  E-value=1.5e-111  Score=781.70  Aligned_cols=191  Identities=81%  Similarity=1.197  Sum_probs=187.5

Q ss_pred             CccchhhHHhhccCCCCccccChHHHhhhhcccccccccHHHHHHHHHHHhhccCCCCcccChhHHHHHhcCChHHHHHH
Q 024138           60 SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIF  139 (272)
Q Consensus        60 ~~~~~k~a~~etLLTPRFYTTDFd~m~~lf~~eid~~~~~~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~~~R~~F  139 (272)
                      +++++|.|++||||||||||||||+|++|||++||++++++||+||++|||+||||+|||||+||+++|++|||++|++|
T Consensus         1 ~~~~~k~~~~etlLTPRFYTTDF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~F   80 (357)
T PLN02508          1 MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIF   80 (357)
T ss_pred             CCccccchhhhcccCCccccccHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccchhhHHHHHHhhhhhccCccHHHHHhhhccchhhhhcchhhhhhhh-----------hhcccccCceee
Q 024138          140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVM-----------YVKYTFFKPKFI  208 (272)
Q Consensus       140 veFLerScTAEFSGfLLYKEl~rrlk~~NP~lae~F~lMsRDEARHAGFlNkal~Df-----------~rkYTfF~PKfI  208 (272)
                      |||||||||||||||||||||+||||++||+|+|+|.+||||||||||||||||+||           +|+||||+||||
T Consensus        81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rkYTfF~PkfI  160 (357)
T PLN02508         81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFI  160 (357)
T ss_pred             HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCceeeeCccee
Confidence            999999999999999999999999999999999999999999999999999999999           999999999999


Q ss_pred             eeehhcccccchhHHHHHHhHHhhCCCCCCCCCccccccchhhhhhhh
Q 024138          209 FYATYLSEKIGYWRYITIYRHLKANPDSSMTGRQSCGPDFSASRCMSQ  256 (272)
Q Consensus       209 fYATYLSEKIGYwRYItIyRHLe~nPe~r~~~~~~~~PIF~~Fe~~~~  256 (272)
                      |||||||||||||||||||||||+|||+|      |||||+|||.--|
T Consensus       161 fYAtYLSEKIGYwRYItIyRHLe~~Pe~r------~~PIFk~Fe~WCq  202 (357)
T PLN02508        161 FYATYLSEKIGYWRYITIYRHLQANPDYQ------LYPIFKYFENWCQ  202 (357)
T ss_pred             ehhhHhhhhhhhhhHhHHHHHHHhCcccc------cchHHHHHHHHhc
Confidence            99999999999999999999999999999      9999999997655

>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids Back     alignment and domain information
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Back     alignment and domain information
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query272
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 48/198 (24%)

Query: 90  NTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTA 149
           + E  +   Q +++ +L  F+       FV N + K+  D  +  L +  ++ +  S  A
Sbjct: 8   DFETGEH--QYQYKDILSVFEDA-----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 150 EFSGFLLYKELGRRLKKTNPVVAEIFS---------LMSRDEARHAGYECASKSVMYVKY 200
                 L+  L   L K   +V +            LMS         E    S+M   Y
Sbjct: 61  VSGTLRLFWTL---LSKQEEMVQKFVEEVLRINYKFLMSP-----IKTEQRQPSMMTRMY 112

Query: 201 TFFKPKFIFYATYLSEKIGYWR---YITIYRHL-KANPDSS-----MTGRQSCGPDFSAS 251
              + + ++    +  K    R   Y+ + + L +  P  +     + G    G      
Sbjct: 113 IEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---SG------ 162

Query: 252 RCMSQCISMTASVLLSMR 269
                   +   V LS +
Sbjct: 163 ---KTW--VALDVCLSYK 175

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 96.76
2fzf_A175 Hypothetical protein; structural genomics, southea 96.47
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 96.31
1zpy_A95 Hypothetical protein NE0167; structural genomics, 94.72
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 92.99
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 92.82
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 92.47
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 92.27
3k6c_A95 Uncharacterized protein NE0167; structural genomic 92.03
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 91.98
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 91.94
2e0z_A 345 Virus-like particle; bacteriophage, HK97; 3.60A {P 91.85
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 91.64
2fzf_A175 Hypothetical protein; structural genomics, southea 91.47
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 91.13
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 91.12
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 90.93
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 90.61
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 90.56
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 90.22
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 89.12
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 88.97
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 88.12
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 87.72
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 86.9
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 85.96
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 85.66
3pf7_A 481 Benzoyl-COA oxygenase component B; DIIRON center, 85.16
3fwb_A161 Cell division control protein 31; gene gating, com 84.85
4etr_A153 Putative uncharacterized protein; DUF2383, domain 84.65
1jfj_A134 Ehcabp, calcium-binding protein; EF-hand, helix-lo 82.46
2sas_A185 Sarcoplasmic calcium-binding protein; 2.40A {Branc 82.42
2bl0_B145 Myosin regulatory light chain; muscle protein, sli 82.02
2ovk_B153 RLC, myosin regulatory light chain LC-2, mantle mu 82.0
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 81.99
2r2i_A198 Guanylyl cyclase-activating protein 1; EF hand, GC 81.78
1k94_A165 Grancalcin; penta-EF-hand protein, calcium binding 81.17
3e3r_A204 Calcyphosin, calcyphosine; human calcyphosine, EF- 81.13
1jfj_A134 Ehcabp, calcium-binding protein; EF-hand, helix-lo 80.83
2hz8_A115 De novo designed DIIRON protein; four-helix bundle 80.78
1fpw_A190 Yeast frequenin, calcium-binding protein NCS-1; EF 80.74
3pvt_A 311 Phenylacetic acid degradation protein PAAA; protei 80.71
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 80.25
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
Probab=96.76  E-value=0.00075  Score=53.30  Aligned_cols=51  Identities=22%  Similarity=0.200  Sum_probs=47.8

Q ss_pred             HHHHHHhhhhccchhhHHHHHHhhhhhccCccHHHHHhhhccchhhhhcchhhh
Q 024138          139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECAS  192 (272)
Q Consensus       139 FveFLerScTAEFSGfLLYKEl~rrlk~~NP~lae~F~lMsRDEARHAGFlNka  192 (272)
                      +.+.|...+..|-.|.-.|+.++. .  +||.++++|..||.+|.+|+.+|.+-
T Consensus        15 ~~e~L~~Ai~~E~~~~~~Y~~lA~-~--~~~~~k~lF~~LA~eE~~H~~~l~~l   65 (157)
T 1vjx_A           15 VSDILTVAIRLEEEGERFYRELSE-H--FNGEIKKTFLELADQERIHAEIFRKM   65 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT-S--CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-c--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567888999999999999999999 5  89999999999999999999999885
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A Back     alignment and structure
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A Back     alignment and structure
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa} Back     alignment and structure
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Back     alignment and structure
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Back     alignment and structure
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Back     alignment and structure
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Back     alignment and structure
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Back     alignment and structure
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Back     alignment and structure
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A Back     alignment and structure
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 97.18
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 96.72
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 96.54
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 96.23
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 96.0
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 95.95
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 91.3
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 90.81
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 90.69
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 88.59
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 88.05
d1za0a1267 Possible acyl-[acyl-carrier protein] desaturase {M 87.67
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 87.07
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 86.68
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 86.35
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 86.22
d1jk0a_334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 84.86
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 84.72
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 83.83
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 83.45
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 82.48
d1jfja_134 EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 82.02
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 81.93
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 81.73
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.18  E-value=0.00012  Score=53.19  Aligned_cols=56  Identities=21%  Similarity=0.291  Sum_probs=51.7

Q ss_pred             HHHHHHhhhhccchhhHHHHHHhhhhhccCccHHHHHhhhccchhhhhcchhhhhhhh
Q 024138          139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGYECASKSVM  196 (272)
Q Consensus       139 FveFLerScTAEFSGfLLYKEl~rrlk~~NP~lae~F~lMsRDEARHAGFlNkal~Df  196 (272)
                      ..|+|.....-|-.|.-.|..++.+.  .||.++++|..|++||.+|+..+.+.+...
T Consensus        12 l~e~l~~ai~~E~~a~~~Y~~~a~~~--~~~~~~~~f~~la~eE~~H~~~~~~~~~~~   67 (158)
T d2fzfa1          12 LEELLGMAIKAEIGAREFYKSLAEKI--KIEALKEKINWLAEEEKKHEALLRKLYSQM   67 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC--CCTTHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57788888899999999999999998  689999999999999999999999988777
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure