Citrus Sinensis ID: 024169


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
MVSDMNAFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
cccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccEEcccccccccccccEEEEcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHEEccccccccccccccccccHHHHHHHHHHEHHHHHEccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccc
MVSDMNAFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGfffgrtpliklspkktwegFIGASVATITSAFVLANIMGRfqwltcprkdlatgwlhcdpgplfkpesfplpgwlpwkeitilPVQWHALCLGLFAsiiapfggffasgFKRAFKikdfgdsipghggitdrmDCQMVMAVFAYIYhqsfivpqSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
MVSDMNAFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
MVSDMNAFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
******AFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERL****
**SDMNAFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEIL********
MVSDMNAFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
MVSDMNAFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERL****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVSDMNAFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query271 2.2.26 [Sep-21-2011]
O04928421 Phosphatidate cytidylyltr no no 0.948 0.610 0.839 1e-127
O04940424 Phosphatidate cytidylyltr N/A no 0.959 0.613 0.840 1e-125
Q92903461 Phosphatidate cytidylyltr yes no 0.929 0.546 0.477 8e-67
P98191461 Phosphatidate cytidylyltr yes no 0.929 0.546 0.477 1e-66
O35052461 Phosphatidate cytidylyltr yes no 0.929 0.546 0.477 2e-66
Q9P381439 Putative phosphatidate cy yes no 0.940 0.580 0.460 1e-65
Q99L43444 Phosphatidate cytidylyltr no no 0.929 0.567 0.461 3e-64
O95674445 Phosphatidate cytidylyltr no no 0.933 0.568 0.460 4e-64
A0JNC1445 Phosphatidate cytidylyltr no no 0.929 0.566 0.461 5e-64
P56079447 Phosphatidate cytidylyltr yes no 0.952 0.577 0.496 1e-62
>sp|O04928|CDS1_ARATH Phosphatidate cytidylyltransferase OS=Arabidopsis thaliana GN=CDS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/261 (83%), Positives = 239/261 (91%), Gaps = 4/261 (1%)

Query: 11  LGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVIN 70
           +GF+WFILTLKKKMYKYQF QYAWTHMILIVVF QSSFTVA+IFEGIFWFLLPASLI+IN
Sbjct: 160 IGFMWFILTLKKKMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIIIN 219

Query: 71  DIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLA 130
           DI AYIFGFFFGRTPLIKLSPKKTWEGFIGASV TI SAFVLANI+GRF WLTCPR+DL+
Sbjct: 220 DIFAYIFGFFFGRTPLIKLSPKKTWEGFIGASVTTIISAFVLANILGRFPWLTCPRQDLS 279

Query: 131 TGWLHCDPGPLFKPESFPLPGWL----PWKEITILPVQWHALCLGLFASIIAPFGGFFAS 186
           TGWL CD  PLFKPE F LP W+    PWKE+TILPVQWHALCLGLFASIIAPFGGFFAS
Sbjct: 280 TGWLQCDADPLFKPEPFALPAWIPEWFPWKEMTILPVQWHALCLGLFASIIAPFGGFFAS 339

Query: 187 GFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTA 246
           GFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIY QSFIV QS  V+ IL+QILT 
Sbjct: 340 GFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYLQSFIVSQSVSVDKILDQILTN 399

Query: 247 LTYEEQKALYMKLGEILQERL 267
           LT+EEQ+AL++KLG++L+++L
Sbjct: 400 LTFEEQQALFVKLGQMLKDKL 420




May be involved in the synthesis of minor phospholipids and in modulation of IP3-mediated signal transduction.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 4EC: 1
>sp|O04940|CDS1_SOLTU Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1 Back     alignment and function description
>sp|Q92903|CDS1_HUMAN Phosphatidate cytidylyltransferase 1 OS=Homo sapiens GN=CDS1 PE=2 SV=2 Back     alignment and function description
>sp|P98191|CDS1_MOUSE Phosphatidate cytidylyltransferase 1 OS=Mus musculus GN=Cds1 PE=2 SV=2 Back     alignment and function description
>sp|O35052|CDS1_RAT Phosphatidate cytidylyltransferase 1 OS=Rattus norvegicus GN=Cds1 PE=1 SV=2 Back     alignment and function description
>sp|Q9P381|CDSH_SCHPO Putative phosphatidate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13A2.03 PE=1 SV=1 Back     alignment and function description
>sp|Q99L43|CDS2_MOUSE Phosphatidate cytidylyltransferase 2 OS=Mus musculus GN=Cds2 PE=1 SV=1 Back     alignment and function description
>sp|O95674|CDS2_HUMAN Phosphatidate cytidylyltransferase 2 OS=Homo sapiens GN=CDS2 PE=1 SV=1 Back     alignment and function description
>sp|A0JNC1|CDS2_BOVIN Phosphatidate cytidylyltransferase 2 OS=Bos taurus GN=CDS2 PE=1 SV=1 Back     alignment and function description
>sp|P56079|CDSA_DROME Phosphatidate cytidylyltransferase, photoreceptor-specific OS=Drosophila melanogaster GN=CdsA PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
356576511 424 PREDICTED: phosphatidate cytidylyltransf 0.959 0.613 0.856 1e-131
356535384 424 PREDICTED: phosphatidate cytidylyltransf 0.937 0.599 0.872 1e-131
255554719 423 phosphatidate cytidylyltransferase, puta 0.959 0.614 0.859 1e-129
297799782 423 hypothetical protein ARALYDRAFT_492631 [ 0.955 0.612 0.844 1e-129
357447853 426 Phosphatidate cytidylyltransferase [Medi 0.937 0.596 0.860 1e-129
212720954 425 phosphatidate cytidylyltransferase [Zea 0.959 0.611 0.825 1e-127
224118188 422 predicted protein [Populus trichocarpa] 0.940 0.604 0.845 1e-127
115440045 425 Os01g0758400 [Oryza sativa Japonica Grou 0.959 0.611 0.833 1e-127
218189085 490 hypothetical protein OsI_03804 [Oryza sa 0.959 0.530 0.833 1e-127
449434016 422 PREDICTED: phosphatidate cytidylyltransf 0.952 0.611 0.835 1e-127
>gi|356576511|ref|XP_003556374.1| PREDICTED: phosphatidate cytidylyltransferase-like [Glycine max] Back     alignment and taxonomy information
 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/264 (85%), Positives = 245/264 (92%), Gaps = 4/264 (1%)

Query: 12  GFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVIND 71
           GF+WFILTLKKKMYKYQF QYAWTHMILIVVF QSSFTVASIFEGIFWFLLPA+LIVIND
Sbjct: 161 GFMWFILTLKKKMYKYQFGQYAWTHMILIVVFGQSSFTVASIFEGIFWFLLPATLIVIND 220

Query: 72  IAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLAT 131
           IAAYIFGFFFGRTPLIKLSPKKTWEGFIGASV TI SAF+LANIMGR QWLTCPRKDL+T
Sbjct: 221 IAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVTTIISAFMLANIMGRSQWLTCPRKDLST 280

Query: 132 GWLHCDPGPLFKPESFPLPGWLP----WKEITILPVQWHALCLGLFASIIAPFGGFFASG 187
           GWLHCDPGPLFKPES+PL GW+     WKEI+ILP+QWH+LCLGLFASIIAPFGGFFASG
Sbjct: 281 GWLHCDPGPLFKPESYPLQGWISHWFAWKEISILPIQWHSLCLGLFASIIAPFGGFFASG 340

Query: 188 FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTAL 247
           FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF+VPQ+  VEMIL+QIL  L
Sbjct: 341 FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFVVPQTLSVEMILDQILINL 400

Query: 248 TYEEQKALYMKLGEILQERLFGQS 271
           T++EQ+ALY +LGEILQ+ +  +S
Sbjct: 401 TFDEQEALYWRLGEILQQGITRKS 424




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535384|ref|XP_003536226.1| PREDICTED: phosphatidate cytidylyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|255554719|ref|XP_002518397.1| phosphatidate cytidylyltransferase, putative [Ricinus communis] gi|223542242|gb|EEF43784.1| phosphatidate cytidylyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297799782|ref|XP_002867775.1| hypothetical protein ARALYDRAFT_492631 [Arabidopsis lyrata subsp. lyrata] gi|297313611|gb|EFH44034.1| hypothetical protein ARALYDRAFT_492631 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357447853|ref|XP_003594202.1| Phosphatidate cytidylyltransferase [Medicago truncatula] gi|87241162|gb|ABD33020.1| Phosphatidate cytidylyltransferase [Medicago truncatula] gi|355483250|gb|AES64453.1| Phosphatidate cytidylyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|212720954|ref|NP_001132909.1| phosphatidate cytidylyltransferase [Zea mays] gi|194695728|gb|ACF81948.1| unknown [Zea mays] gi|413952386|gb|AFW85035.1| phosphatidate cytidylyltransferase [Zea mays] Back     alignment and taxonomy information
>gi|224118188|ref|XP_002331579.1| predicted protein [Populus trichocarpa] gi|222873803|gb|EEF10934.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115440045|ref|NP_001044302.1| Os01g0758400 [Oryza sativa Japonica Group] gi|57900376|dbj|BAD87586.1| putative CDP-diacylglycerol synthetase [Oryza sativa Japonica Group] gi|113533833|dbj|BAF06216.1| Os01g0758400 [Oryza sativa Japonica Group] gi|215701265|dbj|BAG92689.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765256|dbj|BAG86953.1| unnamed protein product [Oryza sativa Japonica Group] gi|222619276|gb|EEE55408.1| hypothetical protein OsJ_03517 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218189085|gb|EEC71512.1| hypothetical protein OsI_03804 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|449434016|ref|XP_004134792.1| PREDICTED: phosphatidate cytidylyltransferase-like [Cucumis sativus] gi|449516305|ref|XP_004165187.1| PREDICTED: phosphatidate cytidylyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
TAIR|locus:2132026447 CDS2 "cytidinediphosphate diac 0.952 0.577 0.839 5.8e-121
TAIR|locus:2027144421 CDS1 "CDP-diacylglycerol synth 0.948 0.610 0.839 1.1e-119
TAIR|locus:2116272471 AT4G26770 [Arabidopsis thalian 0.970 0.558 0.779 5.6e-116
ASPGD|ASPL0000030062450 AN5166 [Emericella nidulans (t 0.929 0.56 0.507 1e-68
FB|FBgn0010350447 CdsA "CDP diglyceride syntheta 0.952 0.577 0.496 3.6e-66
UNIPROTKB|F6Z956467 CDS1 "Phosphatidate cytidylylt 0.937 0.543 0.483 4.5e-66
ZFIN|ZDB-GENE-070705-78431 si:ch211-168m18.1 "si:ch211-16 0.937 0.589 0.490 4.5e-66
UNIPROTKB|G1LAF9459 CDS1 "Phosphatidate cytidylylt 0.937 0.553 0.486 2.5e-65
UNIPROTKB|G3MZU2461 LOC100336936 "Phosphatidate cy 0.937 0.550 0.486 3.2e-65
UNIPROTKB|F6SYW0461 CDS1 "Phosphatidate cytidylylt 0.937 0.550 0.483 3.2e-65
TAIR|locus:2132026 CDS2 "cytidinediphosphate diacylglycerol synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 220/262 (83%), Positives = 241/262 (91%)

Query:    12 GFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVIND 71
             GFVWFILTLKKKMYKYQFSQYAWTHMILIVVF QSSFTVA+IFEGIFWFLLPASLIVIND
Sbjct:   185 GFVWFILTLKKKMYKYQFSQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVIND 244

Query:    72 IAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLAT 131
             I AYI GFFFGRTPLIKLSPKKTWEGFIGAS+ T+ SAF+LANIMGRF WLTCPR+DL+T
Sbjct:   245 IFAYICGFFFGRTPLIKLSPKKTWEGFIGASITTVISAFLLANIMGRFLWLTCPREDLST 304

Query:   132 GWLHCDPGPLFKPESFPLPGW----LPWKEITILPVQWHALCLGLFASIIAPFGGFFASG 187
             GWL CDPGPLFK E+  LPGW    LPWKEI+ILPVQWHALCLGLFASIIAPFGGFFASG
Sbjct:   305 GWLLCDPGPLFKQETHALPGWISDWLPWKEISILPVQWHALCLGLFASIIAPFGGFFASG 364

Query:   188 FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTAL 247
             FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF+VP+   V+ +L+QI+T+L
Sbjct:   365 FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFVVPEVLSVDKLLDQIITSL 424

Query:   248 TYEEQKALYMKLGEILQERLFG 269
             T EEQ+AL +KLG++LQE++ G
Sbjct:   425 TLEEQQALLVKLGQMLQEKVIG 446




GO:0004605 "phosphatidate cytidylyltransferase activity" evidence=IEA;ISS;IMP
GO:0016020 "membrane" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0019408 "dolichol biosynthetic process" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2027144 CDS1 "CDP-diacylglycerol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116272 AT4G26770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030062 AN5166 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0010350 CdsA "CDP diglyceride synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F6Z956 CDS1 "Phosphatidate cytidylyltransferase" [Monodelphis domestica (taxid:13616)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-78 si:ch211-168m18.1 "si:ch211-168m18.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G1LAF9 CDS1 "Phosphatidate cytidylyltransferase" [Ailuropoda melanoleuca (taxid:9646)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZU2 LOC100336936 "Phosphatidate cytidylyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6SYW0 CDS1 "Phosphatidate cytidylyltransferase" [Equus caballus (taxid:9796)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04940CDS1_SOLTU2, ., 7, ., 7, ., 4, 10.84090.95940.6132N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.410.946
3rd Layer2.7.70.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00005252001
RecName- Full=Phosphatidate cytidylyltransferase; EC=2.7.7.41; (424 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00036124001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (225 aa)
      0.528

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
PLN02594342 PLN02594, PLN02594, phosphatidate cytidylyltransfe 1e-178
pfam01148259 pfam01148, CTP_transf_1, Cytidylyltransferase fami 5e-39
COG0575265 COG0575, CdsA, CDP-diglyceride synthetase [Lipid m 3e-27
COG4589303 COG4589, COG4589, Predicted CDP-diglyceride synthe 5e-13
PLN02953403 PLN02953, PLN02953, phosphatidate cytidylyltransfe 4e-12
PRK11624285 PRK11624, cdsA, CDP-diglyceride synthase; Provisio 9e-11
>gnl|CDD|215322 PLN02594, PLN02594, phosphatidate cytidylyltransferase Back     alignment and domain information
 Score =  493 bits (1272), Expect = e-178
 Identities = 223/264 (84%), Positives = 239/264 (90%), Gaps = 4/264 (1%)

Query: 12  GFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVIND 71
           GFVWFILTLKK MYKYQF QYAWTHMILIVVF QSSFTVA+IFEGIFWFLLPASLIVIND
Sbjct: 79  GFVWFILTLKKGMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVIND 138

Query: 72  IAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLAT 131
           IAAY+FGFFFGRTPLIKLSPKKTWEGFIGASV T+ SAF LANIMG+FQWLTCPRKDL+T
Sbjct: 139 IAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIMGKFQWLTCPRKDLST 198

Query: 132 GWLHCDPGPLFKPESFPLPGW----LPWKEITILPVQWHALCLGLFASIIAPFGGFFASG 187
           GWL CDP PLFKPE++PLPGW     PWKE+++LPVQWHAL LGLFASIIAPFGGFFASG
Sbjct: 199 GWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSLGLFASIIAPFGGFFASG 258

Query: 188 FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTAL 247
           FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIY+QSFIVPQS  V  +L+QILT L
Sbjct: 259 FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIVPQSVSVGKLLDQILTLL 318

Query: 248 TYEEQKALYMKLGEILQERLFGQS 271
           T EEQK LY+KLG++LQER  G  
Sbjct: 319 TDEEQKELYVKLGQMLQERGLGLG 342


Length = 342

>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family Back     alignment and domain information
>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|226955 COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only] Back     alignment and domain information
>gnl|CDD|178539 PLN02953, PLN02953, phosphatidate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|183240 PRK11624, cdsA, CDP-diglyceride synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 271
PLN02594342 phosphatidate cytidylyltransferase 100.0
KOG1440432 consensus CDP-diacylglycerol synthase [Lipid trans 100.0
PRK11624285 cdsA CDP-diglyceride synthase; Provisional 100.0
PLN02953403 phosphatidate cytidylyltransferase 100.0
COG0575265 CdsA CDP-diglyceride synthetase [Lipid metabolism] 100.0
PF01148259 CTP_transf_1: Cytidylyltransferase family; InterPr 100.0
COG4589303 Predicted CDP-diglyceride synthetase/phosphatidate 100.0
PRK04032159 hypothetical protein; Provisional 99.94
PF01864175 DUF46: Putative integral membrane protein DUF46; I 99.74
KOG4453269 consensus Predicted ER membrane protein [Function 97.86
COG0170216 SEC59 Dolichol kinase [Lipid metabolism] 97.37
KOG2468510 consensus Dolichol kinase [Lipid transport and met 94.98
>PLN02594 phosphatidate cytidylyltransferase Back     alignment and domain information
Probab=100.00  E-value=1.2e-76  Score=557.38  Aligned_cols=265  Identities=84%  Similarity=1.445  Sum_probs=252.5

Q ss_pred             hHHHHHHHHHhHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhhhhHHHHhhhccCCcc
Q 024169            6 NAFSYLGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTP   85 (271)
Q Consensus         6 ~~~~~~g~~~fv~~L~~~~~~~~~~~~~~t~~~~~~v~~~~~~~i~~~~~G~~~~~~~~~~v~~nD~~AY~~Gk~fGk~k   85 (271)
                      +.+-.+|+++||++|+|+++|+|+.+++||++++++++.++++.+.|+++|..|+++|+.+||+||++||++||.|||||
T Consensus        73 f~ly~~gfv~FvlsL~k~~~k~qf~~~a~t~~~llyV~~~~~~ii~ni~~G~~w~~l~~~lV~~nDi~AY~~G~~fGk~k  152 (342)
T PLN02594         73 YSLYIAGFVWFILTLKKGMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVINDIAAYLFGFFFGRTP  152 (342)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhHHHHHHHHHhcCCC
Confidence            45667899999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             cccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCccccCCCCCCCCCCCCCCCC----CCccccccc
Q 024169           86 LIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGW----LPWKEITIL  161 (271)
Q Consensus        86 L~~iSP~KT~EG~iGG~i~t~l~~~~~~~~~~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~l~~~----~~~~~i~~~  161 (271)
                      ++++||||||||++||.++|++++++++.+++++.|++||.++++..+++||++++|.|++|.+|.|    +++.++++.
T Consensus       153 L~~iSPkKTwEGfiGg~i~T~i~~~~~~~~~~~~~~~~cp~~~~~~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~~i~~~  232 (342)
T PLN02594        153 LIKLSPKKTWEGFIGASVTTLISAFYLANIMGKFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVL  232 (342)
T ss_pred             CCccCCCCchhhhHHHHHHHHHHHHHHHHHhcccccccCCccccccCcccCCCccccccccccCCccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999865    344567778


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 024169          162 PVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILE  241 (271)
Q Consensus       162 ~~~~~~l~l~~~~sl~a~~GDL~~S~iKR~~gIKD~G~~iPGHGGiLDR~Dsllf~~~~~y~~~~~fi~~~~~~~~~~~~  241 (271)
                      |.++|++++|+++|++||+||++||++||++||||||+++|||||++||+||+++++|++|+|++.||+.++.|++.+++
T Consensus       233 ~~~~h~l~l~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHGGilDRfDs~l~~~~f~y~y~~~fi~~~~~~~~~il~  312 (342)
T PLN02594        233 PVQWHALSLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIVPQSVSVGKLLD  312 (342)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCccccccccHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHhcccCC
Q 024169          242 QILTALTYEEQKALYMKLGEILQERLFGQ  270 (271)
Q Consensus       242 ~~~~~l~~~~~~~l~~~l~~~~~~~~~~~  270 (271)
                      ++.++|++|||++|++.|+++++++|...
T Consensus       313 ~i~~~l~~~~q~~l~~~l~~~l~~~g~~~  341 (342)
T PLN02594        313 QILTLLTDEEQKELYVKLGQMLQERGLGL  341 (342)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            99889999999999999999999998754



>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism] Back     alignment and domain information
>PRK11624 cdsA CDP-diglyceride synthase; Provisional Back     alignment and domain information
>PLN02953 phosphatidate cytidylyltransferase Back     alignment and domain information
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism] Back     alignment and domain information
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2 Back     alignment and domain information
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only] Back     alignment and domain information
>PRK04032 hypothetical protein; Provisional Back     alignment and domain information
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function Back     alignment and domain information
>KOG4453 consensus Predicted ER membrane protein [Function unknown] Back     alignment and domain information
>COG0170 SEC59 Dolichol kinase [Lipid metabolism] Back     alignment and domain information
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 43/306 (14%), Positives = 77/306 (25%), Gaps = 116/306 (37%)

Query: 17  ILTLKKKMYKYQFSQYAWTH-M------ILIVVFAQSSFTVASIFEGIFWFLL-----PA 64
            L L++ + + + ++      +       + +    S      +   IFW  L     P 
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 65  SLI--------------------------VINDIAAYIFGFFFGR---TPLIKL---SPK 92
           +++                           I+ I A +      +     L+ L      
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 93  KTWEGF-IG---------ASVATITSAFVLANI-MGRFQW-LTCPR-KDLATGWLHCDPG 139
           K W  F +            V    SA    +I +      LT    K L   +L C P 
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 140 PLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGD 199
            L            P + +T  P       L + A                   I+D   
Sbjct: 317 DL------------PREVLTTNP-----RRLSIIAE-----------------SIRDG-- 340

Query: 200 SIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKL 259
                       D            H         ++  I+E  L  L   E + ++ +L
Sbjct: 341 --------LATWD---------NWKH-----VNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 260 GEILQE 265
             +   
Sbjct: 379 S-VFPP 383


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00