Citrus Sinensis ID: 024174

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MESALCLNFCPSVAMRVKPVTKLGSGHSSIWISLSKGSTRRPFGRVFSPVICAHDGSSTPSENDNKIVKGAVGASLVLTCALGIMSFSSRMNPKAIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNMEEAKKWWEEFAETIDDEEFDPTKGFH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccEcccccccccccccccccccccEEccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccHHHHccccccEEccccccHHHHHHHHcccHHHHHcccccccccccccccccccHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mesalclnfcpsvamrvkpvtklgsghSSIWISlskgstrrpfgrvfspvicahdgsstpsendnkivKGAVGASLVLTCALGIMsfssrmnpkaiaagpmemyqkaprmsvlphpiggryalNSFLDVSVRLasskaepfywprytvppgpsaedVNAIKAEAVKQMKYGKPEFAVTLLKKVYEdcknepepaynVEMALVEILIYQGKYREALecnclkdeqripsdgrfpFYKAIIYTMLNMEEAKKWWEEFAEtiddeefdptkgfh
Flexible Loop (DISEMBL)
mesalclnfcpsVAMRVKPVTKLGSGHSSIWISLSKGSTRRPFGRVFSPVICAHdgsstpsendnKIVKGAVGASLVLTCALGIMSFSSRMNPKAIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKdeqripsdgrfpFYKAIIYTMLNMEEAKKWWEEFAETIddeefdptkgfh
Low Complexity Region (SEG)
MESALCLNFCPSVAMRVKPVTKLGSGHSSIWISLSKGSTRRPFGRVFSPVICAHDGSSTPSENDNKIVKGAVGASLVLTCALGIMSFSSRMNPKAIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNMeeakkwweefaeTIDDEEFDPTKGFH
Disordered region (IsUnstruct)
****LCLNFCPSVAMRVKPVTKLGSGHSSIWISLSKGSTRRPFGRVFSPVICAH***********KIVKGAVGASLVLTCALGIMSFSSR*****I************RMSVLPHPIGGRYALNSFLDVSVRLASSKAEPFYWPRYTVP*******VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNMEEAKKWWEEFAETI************
Disordered Region (DISOPRED)
**SALC*NFCPSVAMRVKPV**************************FSPVIC*****************GAVGASLVLTCALGIMSFSSRMNPKA*************************YALNSFLDVSVR***********************************************************E*AYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNMEEAKKWWEEFAETIDDEEFD******
Disordered Region (DISEMBL)
MESALCLNFCPSVAMRVKPVTKLGSGHSSIWISLSKGSTRRPFGRVFSPVICAHD********DNKIVKGAVGASLVLTCALGIMSFSSRMNPKAIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNMEEAKKWWEEFAETIDDEEFDPTKGFH
Disordered Region (DISPRO)
*ESALCLNFCPSVAMRVKPVTKLGSGHSSIWISLSKGSTRRPFGRVFSPVICAHDGSSTPSENDNKIVKGAVGASLVLTCALGIMSFSSRMNPKAIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVSVRLASSKAE*FYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNMEEAKKWWEEFAETIDDEEFDPT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESALCLNFCPSVAMRVKPVTKLGSGHSSIWISLSKGSTRRPFGRVFSPVICAHDGSSTPSENDNKIVKGAVGASLVLTCALGIMSFSSRMNPKAIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNMEEAKKWWEEFAETIDDEEFDPTKGFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
255557311	284	conserved hypothetical protein [Ricinus	0.874	0.834	0.538	7e-57
224078980	273	predicted protein [Populus trichocarpa]	0.874	0.868	0.517	1e-52
297823237	290	binding protein [Arabidopsis lyrata subs	0.797	0.744	0.412	5e-34
79324323	288	uncharacterized protein [Arabidopsis tha	0.896	0.843	0.391	2e-33
41059781	213	hypothetical protein At2g34540 [Arabidop	0.712	0.906	0.428	1e-29
30686104	271	uncharacterized protein [Arabidopsis tha	0.789	0.789	0.367	1e-24
356512185	290	PREDICTED: uncharacterized protein LOC10	0.896	0.837	0.301	2e-17
225444553	244	PREDICTED: uncharacterized protein LOC10	0.704	0.782	0.278	3e-13
356528124	278	PREDICTED: uncharacterized protein LOC10	0.745	0.726	0.333	1e-12
297740694	200	unnamed protein product [Vitis vinifera]	0.675	0.915	0.275	2e-12

>gi|255557311|ref|XP_002519686.1| conserved hypothetical protein [Ricinus communis] gi|223541103|gb|EEF42659.1| conserved hypothetical protein [Ricinus communis]

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 134/249 (53%), Positives = 175/249 (70%), Gaps = 12/249 (4%)

Query: 25  SGHSSIWISLSKGSTRRPFGRVFSPVICAHDGSST-PSEND---NKIVKGAVGASLVLTC 80
           S H+S   SL+  +T  P  ++ +P I A DGSS+ PS ND   NKI K    AS+ L C
Sbjct: 36  SNHTSP--SLTSRNTCHPGRKLLNPTIRALDGSSSVPSGNDRKANKIAKNTARASIALAC 93

Query: 81  ALGIMSFSSRMNPKAIAAGPMEMYQKAPRM-SVLP-HPIGGRYALNSFLDVSVRLASSKA 138
            LGI+  S +MNP+AIA GP E +QKAP++ S  P +P+GGRYAL S LDV+V LAS+K 
Sbjct: 94  VLGIIGASLKMNPEAIA-GPREKFQKAPQIVSNSPAYPLGGRYALKSLLDVNVYLASTKI 152

Query: 139 EPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVE 198
           EP   P   +P  PS E+V  IK++AV+ +K GKPE AV+LL+  Y+  +++ EPAYNV 
Sbjct: 153 EP-PGPPSRLPARPSMENVYDIKSDAVRLIKCGKPEEAVSLLENSYKFYEHDTEPAYNVG 211

Query: 199 MALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFA 256
           MAL+EILI QGKY+EAL+ CN    EQ +PSDGR P YKAIIYTML+  +EAKKWWE++ 
Sbjct: 212 MALIEILICQGKYKEALQYCNRFTGEQFLPSDGRIPLYKAIIYTMLDQRDEAKKWWEKYV 271

Query: 257 ETIDDEEFD 265
           ET+D ++FD
Sbjct: 272 ETVDADQFD 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078980|ref|XP_002305705.1| predicted protein [Populus trichocarpa] gi|222848669|gb|EEE86216.1| predicted protein [Populus trichocarpa]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/253 (51%), Positives = 158/253 (62%), Gaps = 16/253 (6%)

Query: 16  RVKPVTKLGSGHSSIWISLSKGSTRRPFGRVFSPVICAH-DGSSTPSEN----DNKIVKG 70
           R KP   L S   S    L+   TR   G +  PVICA  D S TPS N    DNKIVK 
Sbjct: 29  RTKPHLSLVSSTPS----LTSCYTRHKLGHLIRPVICASSDRSPTPSRNENNCDNKIVKA 84

Query: 71  AVGASLVLTCALGIMSFSSRMNPKAIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVS 130
           AVGAS+ L CALGI+  + RM PKAIA GP E+YQKAP++   P  +  + AL SFLDV+
Sbjct: 85  AVGASVALACALGIIGGNFRMYPKAIA-GPRELYQKAPQVEEHPSSLA-KLALESFLDVT 142

Query: 131 VRLASSKA-EPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN 189
             LAS+ A  P     +  PP PS E V  IK  AV+ M YG+ E AV  L++ +E  KN
Sbjct: 143 SDLASTDAVSPI--ATFDPPPNPSIEQVKEIKKHAVRLMIYGEAEEAVWYLQEAFEKYKN 200

Query: 190 EPEPAYNVEMALVEILIYQGKYREALECNCLK-DEQRIPSDGRFPFYKAIIYTMLNM-EE 247
           +PEPAYNVEMALVEILIYQ +Y  AL C+CL  D+Q  PSD R   YKAIIYTML+  EE
Sbjct: 201 DPEPAYNVEMALVEILIYQHEYERALNCDCLNHDDQLGPSDARVFLYKAIIYTMLDFNEE 260

Query: 248 AKKWWEEFAETID 260
           A+ WWE +   ++
Sbjct: 261 ARIWWERYMYAVE 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823237|ref|XP_002879501.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297325340|gb|EFH55760.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 132/240 (55%), Gaps = 24/240 (10%)

Query: 46  VFSPVICAHDGSSTPSENDNKI---VKGAVGASLVLTCALGIMSFSSR------------ 90
           + SP+  A   S +   +D K+   +K A GASL L CAL I  F  +            
Sbjct: 51  IRSPITVAKSNSKSDYHDDKKLFTPLKMAAGASLALACALSIFGFKIKNMSYTAAAAANP 110

Query: 91  -MNPKAIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVSVRLASSKAEPFYWP--RYT 147
                 I+  P         M    +P+  ++AL S  +VS  LAS+K  P   P   + 
Sbjct: 111 SAADMIISGKPTSAVSATSGM----YPLPAKFALRSLFEVSSMLASAKPIPSQRPFNLHK 166

Query: 148 VPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY 207
           +P  PS ED+++IK EAV++MK GK E AV LL+      KNEPE  +NV+MALVEILI 
Sbjct: 167 LPSLPSKEDIDSIKMEAVRKMKEGKCEEAVQLLRDANMRYKNEPEADFNVQMALVEILIL 226

Query: 208 QGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNME-EAKKWWEEFAETIDDEEFDP 266
             +Y+EA E +CL DE    SD R P YKAIIYTML+ + EAK+ W+EF ++I  E FDP
Sbjct: 227 LERYQEAAEYSCLNDENAQISDVRIPLYKAIIYTMLDKDTEAKQCWKEFRKSI-GEGFDP 285

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324323|ref|NP_001031482.1| uncharacterized protein [Arabidopsis thaliana] gi|3128221|gb|AAC26701.1| hypothetical protein [Arabidopsis thaliana] gi|330253894|gb|AEC08988.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/273 (39%), Positives = 150/273 (54%), Gaps = 30/273 (10%)

Query: 19  PVTKLGSGH------SSIWISL--SKGSTRRPFGRVFSPVICAHDGSSTPSENDNKIV-- 68
           P++   S H       +I+I    + G +RR   R  SP+  A   S   S +D K +  
Sbjct: 16  PLSHFTSTHKPTLRFQNIYIGFPSNGGQSRRLIIR--SPITVAKSNSKNDSHDDKKQLRP 73

Query: 69  -KGAVGASLVLTCALGIMSFSSRMNPKAI--------AAGPMEMYQK---APRMSVLPHP 116
            K A GASL L CA+ I  F  ++N  +         ++  M +  K   A   +   +P
Sbjct: 74  LKMAAGASLALACAISIFGF--KINNMSYTAAAAAYPSSADMIISGKPTSAASATSGIYP 131

Query: 117 IGGRYALNSFLDVSVRLASSKAEPFYWP--RYTVPPGPSAEDVNAIKAEAVKQMKYGKPE 174
              ++AL S  +VS  LAS+K  P   P   + +P  PS +D+++IK EAV++MK GK E
Sbjct: 132 FPAKFALRSLFEVSSMLASAKPIPSQKPFNLHKLPSLPSKDDIDSIKMEAVRKMKEGKCE 191

Query: 175 FAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPF 234
            AV LL+      +NEPE  +NV+MALVEILI   +Y+EA E +CL DE    SD R P 
Sbjct: 192 EAVQLLRDANMRYRNEPEANFNVQMALVEILILLERYQEAAEYSCLNDENAQISDVRIPL 251

Query: 235 YKAIIYTMLNME-EAKKWWEEFAETIDDEEFDP 266
           YKAIIYTML+ + EAK+ W+EF ++I  E FDP
Sbjct: 252 YKAIIYTMLDKDTEAKQCWKEFRKSI-GEGFDP 283

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41059781|gb|AAR99365.1| hypothetical protein At2g34540 [Arabidopsis thaliana] gi|55740593|gb|AAV63889.1| hypothetical protein [Arabidopsis thaliana]

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/210 (42%), Positives = 124/210 (59%), Gaps = 17/210 (8%)

Query: 71  AVGASLVLTCALGIMSFSSRMNPKAI--------AAGPMEMYQK---APRMSVLPHPIGG 119
           A GASL L CA+ I  F  ++N  +         ++  M +  K   A   +   +P   
Sbjct: 2   AAGASLALACAISIFGF--KINNMSYTAAAAAYPSSADMIISGKPTSAASATSGIYPFPA 59

Query: 120 RYALNSFLDVSVRLASSKAEPFYWP--RYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAV 177
           ++AL S  +VS  LAS+K  P   P   + +P  PS +D+++IK EAV++MK GK E AV
Sbjct: 60  KFALRSLFEVSSMLASAKPIPSQKPFNLHKLPSLPSKDDIDSIKMEAVRKMKEGKCEEAV 119

Query: 178 TLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKA 237
            LL+      +NEPE  +NV+MALVEILI   +Y+EA E +CL DE    SD R P YKA
Sbjct: 120 QLLRDANMRYRNEPEANFNVQMALVEILILLERYQEAAEYSCLNDENAQISDVRIPLYKA 179

Query: 238 IIYTMLNME-EAKKWWEEFAETIDDEEFDP 266
           IIYTML+ + EAK+ W+EF ++I  E FDP
Sbjct: 180 IIYTMLDKDTEAKQCWKEFRKSI-GEGFDP 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686104|ref|NP_181001.2| uncharacterized protein [Arabidopsis thaliana] gi|27754469|gb|AAO22682.1| unknown protein [Arabidopsis thaliana] gi|330253893|gb|AEC08987.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/242 (36%), Positives = 126/242 (52%), Gaps = 28/242 (11%)

Query: 19  PVTKLGSGH------SSIWISL--SKGSTRRPFGRVFSPVICAHDGSSTPSENDNKIV-- 68
           P++   S H       +I+I    + G +RR   R  SP+  A   S   S +D K +  
Sbjct: 16  PLSHFTSTHKPTLRFQNIYIGFPSNGGQSRRLIIR--SPITVAKSNSKNDSHDDKKQLRP 73

Query: 69  -KGAVGASLVLTCALGIMSFSSRMNPKAI--------AAGPMEMYQK---APRMSVLPHP 116
            K A GASL L CA+ I  F  ++N  +         ++  M +  K   A   +   +P
Sbjct: 74  LKMAAGASLALACAISIFGF--KINNMSYTAAAAAYPSSADMIISGKPTSAASATSGIYP 131

Query: 117 IGGRYALNSFLDVSVRLASSKAEPFYWP--RYTVPPGPSAEDVNAIKAEAVKQMKYGKPE 174
              ++AL S  +VS  LAS+K  P   P   + +P  PS +D+++IK EAV++MK GK E
Sbjct: 132 FPAKFALRSLFEVSSMLASAKPIPSQKPFNLHKLPSLPSKDDIDSIKMEAVRKMKEGKCE 191

Query: 175 FAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPF 234
            AV LL+      +NEPE  +NV+MALVEILI   +Y+EA E +CL DE    SD R P 
Sbjct: 192 EAVQLLRDANMRYRNEPEANFNVQMALVEILILLERYQEAAEYSCLNDENAQISDVRIPL 251

Query: 235 YK 236
           YK
Sbjct: 252 YK 253

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512185|ref|XP_003524801.1| PREDICTED: uncharacterized protein LOC100793582 [Glycine max]

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 59/302 (19%)

Query: 1   MESALCLNFCPS-------VAMRVKPVTKLGSGHSSIWISLSKGSTRRPFGRVFSPVICA 53
           MESA+CL  CP           R      L   H++        +TR    R F  V C 
Sbjct: 1   MESAICLRHCPFPYGSKGFQGARPSRFHHLKINHATPLSLPQISTTRSSVTRSFGHVNCM 60

Query: 54  HDG-SSTPSEND---NKIVKGAVGASLVLTCALGIMSFSSR-MNPKAIAAGPMEMYQKAP 108
            +   S PSEN+   N+I++G   ASLVLTC LG+ SFS + MNPK   A     Y    
Sbjct: 61  LERFISMPSENEGSGNRILRGVAAASLVLTCVLGLFSFSGKNMNPKLTTA-----YGNG- 114

Query: 109 RMSVLPHPIG---GRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAV 165
               L  PI    GR+AL S L++      +  +      ++V  GPS ++V  +K  A+
Sbjct: 115 ----LEFPISKPQGRFALKSLLEIPKDEELADTQNKMRSNFSV-RGPSQQEVKNLKWLAI 169

Query: 166 KQMKYGKPEFAVTLLKKVYEDCKNEP-EPAYNVEMALVEILIYQGK-------------- 210
             +    P+      K + E    E  EP  N+E+A+VE+L++QG+              
Sbjct: 170 G-LSSQSPDRRREAQKTLEEQYNCESGEPEQNLELAMVELLMFQGEFDKARDRLDDIIRK 228

Query: 211 ------------YREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNME--EAKKWWEEFA 256
                       Y+ A++ N + ++ R+    R   YKAI++T+L  E  E ++WW  F 
Sbjct: 229 ISKVQPSGMSKLYKTAVQENNMYEKLRL---ARLILYKAIVHTVLGSEQKEREQWWNAFM 285

Query: 257 ET 258
           ET
Sbjct: 286 ET 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444553|ref|XP_002275959.1| PREDICTED: uncharacterized protein LOC100253775 [Vitis vinifera]

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 60/251 (23%)

Query: 27  HSSIWISLSKGSTRRPFGRVFSPVICAHDGSSTPSEN---DNKIVKGAVGASLVLTCALG 83
           HSS  + +S G   R  GR+ +P++CA DG STP  N   D+KIV+  +GA++ LTC LG
Sbjct: 38  HSSTSLPMSSG---RHIGRLLTPIVCAADGVSTPPTNNKGDDKIVRTGIGAAIALTCVLG 94

Query: 84  IMSFSSRMNPKAIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVSVRLASSKAEPFYW 143
           ++  S  +N KAI          +P++ V                      SS+ +  + 
Sbjct: 95  VIGCSYMINQKAIT---------SPKIFV--------------------TGSSRHKNIHQ 125

Query: 144 PRYTVPPGPSAEDVNAIKA-EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALV 202
           P              A KA E ++ M  GK       LK ++++    P+ AYNV M L+
Sbjct: 126 P--------------AAKANELMELMDRGKHNTVSEKLKGMFQE---NPDEAYNVGMELI 168

Query: 203 EILIYQGKYREA------LECNCLKDEQRIPSDGRFPFYKAIIYTMLN-MEEAKKWWEEF 255
           +ILI + ++R+       LE    K        G    YK +++ M+  + EA+  W +F
Sbjct: 169 KILISRERFRDGVTISGQLEGLYGKSTSAPLKKGNLFLYKVLMHGMVGEIGEAELSWNKF 228

Query: 256 AETIDDEEFDP 266
              +      P
Sbjct: 229 KNLLGATSVVP 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528124|ref|XP_003532655.1| PREDICTED: uncharacterized protein LOC100775548 [Glycine max]

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 113/240 (47%), Gaps = 38/240 (15%)

Query: 1   MESALCLNFCPSVAMRVKPVTKLGSGHSSIWISLSKGS---------TRRPFGRVFSPVI 51
           MESA+CL +CP   +   P    G+  S   + ++  +         TR P  R F    
Sbjct: 1   MESAICLRYCP---IPYGPKGFHGANPSRFHLKINHATPLSLPQISTTRSPVTRSFGHAN 57

Query: 52  CAHDG-SSTPSEND---NKIVKGAVGASLVLTCALGIMSFSSR-MNPKAIA--AGPMEMY 104
           C  +  SS PSEN+   NKI++G   +SLVLTC LG+ SF  + MNPK     A P   Y
Sbjct: 58  CMLERFSSVPSENEGSGNKILRGVTLSSLVLTCVLGLFSFGGKNMNPKLTTAYASP---Y 114

Query: 105 QKAPRMSVLPHPIG--GRYALNSFLDV--SVRLASS--KAEPFYWPRYTVPPGPSAEDVN 158
            K    S+ P   G  G  AL S L++     LA +  K    +  R     GPS  +VN
Sbjct: 115 DKIA--SLFPRLDGAQGSVALKSLLEIPSDAELADTQKKRSSNFGER-----GPSQLEVN 167

Query: 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP---EPAYNVEMALVEILIYQGKYREAL 215
            +K  A+   K      A+  L   Y+ CK      E    +E+A+VE+ +++GK+ EAL
Sbjct: 168 NLKWLAIGLSKSPDRSKALKTLTDQYKYCKAHKITGESEQYLELAMVELSMFKGKFEEAL 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740694|emb|CBI30876.3| unnamed protein product [Vitis vinifera]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 57/240 (23%)

Query: 38  STRRPFGRVFSPVICAHDGSSTPSEN---DNKIVKGAVGASLVLTCALGIMSFSSRMNPK 94
           S+ R  GR+ +P++CA DG STP  N   D+KIV+  +GA++ LTC LG++  S  +N K
Sbjct: 2   SSGRHIGRLLTPIVCAADGVSTPPTNNKGDDKIVRTGIGAAIALTCVLGVIGCSYMINQK 61

Query: 95  AIAAGPMEMYQKAPRMSVLPHPIGGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSA 154
           AI          +P++ V                      SS+ +  + P          
Sbjct: 62  AIT---------SPKIFV--------------------TGSSRHKNIHQP---------- 82

Query: 155 EDVNAIKA-EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYRE 213
               A KA E ++ M  GK       LK ++++    P+ AYNV M L++ILI + ++R+
Sbjct: 83  ----AAKANELMELMDRGKHNTVSEKLKGMFQE---NPDEAYNVGMELIKILISRERFRD 135

Query: 214 A------LECNCLKDEQRIPSDGRFPFYKAIIYTMLN-MEEAKKWWEEFAETIDDEEFDP 266
                  LE    K        G    YK +++ M+  + EA+  W +F   +      P
Sbjct: 136 GVTISGQLEGLYGKSTSAPLKKGNLFLYKVLMHGMVGEIGEAELSWNKFKNLLGATSVVP 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2062291	288	AT2G34540 "AT2G34540" [Arabido	0.841	0.791	0.401	6.9e-31
TAIR|locus:2062298	282	AT2G34530 "AT2G34530" [Arabido	0.446	0.429	0.328	2.8e-09

TAIR|locus:2062291 AT2G34540 "AT2G34540" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 98/244 (40%), Positives = 127/244 (52%)

Query:    37 GSTRRPFGRVFSPVICAHDGSSTPSENDNKIV---KGAVGASLVLTCALGIMSFS-SRMN 92
             G +RR   R  SP+  A   S   S +D K +   K A GASL L CA+ I  F  + M+
Sbjct:    42 GQSRRLIIR--SPITVAKSNSKNDSHDDKKQLRPLKMAAGASLALACAISIFGFKINNMS 99

Query:    93 PKAIAAG-PM--EMYQKAPRMSVLP-----HPIGGRYALNSFLDVSVRLASSKAEPFYWP 144
               A AA  P   +M       S        +P   ++AL S  +VS  LAS+K  P   P
Sbjct:   100 YTAAAAAYPSSADMIISGKPTSAASATSGIYPFPAKFALRSLFEVSSMLASAKPIPSQKP 159

Query:   145 --RYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALV 202
                + +P  PS +D+++IK EAV++MK GK E AV LL+      +NEPE  +NV+MALV
Sbjct:   160 FNLHKLPSLPSKDDIDSIKMEAVRKMKEGKCEEAVQLLRDANMRYRNEPEANFNVQMALV 219

Query:   203 EILIYQGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNMXXXXXXXXXXXXTIDDE 262
             EILI   +Y+EA E +CL DE    SD R P YKAIIYTML+                 E
Sbjct:   220 EILILLERYQEAAEYSCLNDENAQISDVRIPLYKAIIYTMLDKDTEAKQCWKEFRKSIGE 279

Query:   263 EFDP 266
              FDP
Sbjct:   280 GFDP 283

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2062298 AT2G34530 "AT2G34530" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 41/125 (32%), Positives = 59/125 (47%)

Query:   118 GGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAV 177
             GG+ AL   LD+      + +       +         D   ++ + VK    GK     
Sbjct:    85 GGKLALQRLLDLHSYRGDTSSLANAELEFEALLSKEKPDFGLLQRDIVKMEMSGKEAKGA 144

Query:   178 TLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFY 235
              LLKK  E  + E +   AY +EM LVE+LIY G   EA +C CL+DE  + +D R P Y
Sbjct:   145 ELLKKALEKARKEGKGHEAYEIEMLLVEMLIYLGNMEEASKCKCLEDE--VITDARRPLY 202

Query:   236 KAIIY 240
             + II+
Sbjct:   203 QTIIH 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      271       259   0.00088  114 3  11 22  0.47    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  199 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.52u 0.16s 22.68t   Elapsed:  00:00:01
  Total cpu time:  22.52u 0.16s 22.68t   Elapsed:  00:00:01
  Start:  Thu May  9 16:17:30 2013   End:  Thu May  9 16:17:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IV000328 hypothetical protein (273 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-06

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALEC 217
            A+        K G  + A+   +K  E   +  +  YN    L       GKY EALE 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYN----LAAAYYKLGKYEEALED 56

Query: 218 --NCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEE 254
               L+ +   P + +  +   + Y  L   EEA + +E+
Sbjct: 57  YEKALELD---PDNAKAYYNLGLAYYKLGKYEEALEAYEK 93

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.31
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.26
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.94
PRK15359	144	type III secretion system chaperone protein SscB;	97.93
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.87
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.82
PF13371	73	TPR_9: Tetratricopeptide repeat	97.75
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.74
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.65
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.61
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.47
PRK15331	165	chaperone protein SicA; Provisional	97.42
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.4
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.35
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.34
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.32
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.23
PRK10803	263	tol-pal system protein YbgF; Provisional	97.23
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.22
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.12
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.11
PRK12370	553	invasion protein regulator; Provisional	97.11
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.05
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.05
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.02
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.01
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.93
PRK12370	553	invasion protein regulator; Provisional	96.91
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.89
PRK11189	296	lipoprotein NlpI; Provisional	96.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.81
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.68
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.64
PRK15359	144	type III secretion system chaperone protein SscB;	96.6
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.57
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.53
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.53
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.44
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.41
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.41
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.23
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.17
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.15
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.12
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.12
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.86
PRK11189	296	lipoprotein NlpI; Provisional	95.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.62
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.6
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.47
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.33
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.32
PRK14574	822	hmsH outer membrane protein; Provisional	95.31
PRK14574	822	hmsH outer membrane protein; Provisional	95.18
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.18
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.95
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.94
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	94.78
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.22
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.05
PF13371	73	TPR_9: Tetratricopeptide repeat	94.02
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	93.96
PF12688	120	TPR_5: Tetratrico peptide repeat	93.75
KOG4555	175	consensus TPR repeat-containing protein [Function	93.75
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	92.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	92.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	92.73
PF13512	142	TPR_18: Tetratricopeptide repeat	92.65
KOG1126	638	consensus DNA-binding cell division cycle control	92.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.59
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	91.9
COG4783	484	Putative Zn-dependent protease, contains TPR repea	91.67
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	91.66
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	91.6
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.37
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	91.15
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.09
KOG4234	271	consensus TPR repeat-containing protein [General f	91.02
KOG2076	895	consensus RNA polymerase III transcription factor	90.6
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	90.07
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	90.01
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	87.55
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.55
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.0
PRK10803	263	tol-pal system protein YbgF; Provisional	86.86
KOG0553	304	consensus TPR repeat-containing protein [General f	86.71
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	86.55
TIGR03362	301	VI_chp_7 type VI secretion-associated protein, VC_	86.53
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.33
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	86.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	86.13
PF13428	44	TPR_14: Tetratricopeptide repeat	85.59
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	85.25
PF12688	120	TPR_5: Tetratrico peptide repeat	85.15
KOG1126	638	consensus DNA-binding cell division cycle control	84.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.82
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	84.32
PLN03218	1060	maturation of RBCL 1; Provisional	83.43
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	83.37
PLN03218	1060	maturation of RBCL 1; Provisional	83.23
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	83.21
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	83.19
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	83.06
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	82.51
PF03704	146	BTAD: Bacterial transcriptional activator domain;	82.38
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	82.0
KOG2076	895	consensus RNA polymerase III transcription factor	81.67
PLN03077	857	Protein ECB2; Provisional	81.61
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.6
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	81.23
COG0457	291	NrfG FOG: TPR repeat [General function prediction	80.68
PRK04841	903	transcriptional regulator MalT; Provisional	80.25
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	80.14

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.31  E-value=9e-06  Score=63.55  Aligned_cols=100  Identities=21%  Similarity=0.162  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +...+...+..+...|++++|.++++.+.+.   +| ....+...+++.+..+|+|++|.. +++..+.+  |.+...++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~   89 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYF   89 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHH
Confidence            4566888999999999999999999887753   23 234667788999999999999999 67777666  89999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      +.|++|..+++ ++|.++|++-.++.|.
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        90 HAAECLLALGEPESALKALDLAIEICGE  117 (135)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            99999999999 9999999999999884

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.26  E-value=9.4e-06  Score=54.44  Aligned_cols=95  Identities=22%  Similarity=0.198  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      +...+..+...|+.++|++.++.+++....+    ..+...++.+++.+|++++|.+ ++...+..  |.+...++..|.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~   76 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGL   76 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHH
Confidence            3456667777899999999999888643222    2677889999999999999999 77777666  788888999999


Q ss_pred             HHHhhCh-HHHHHHHHHHHhhcC
Q 024174          239 IYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +|...+. ++|.++|++-.++.|
T Consensus        77 ~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          77 AYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHhHHHHHHHHHHHHccCC
Confidence            9999999 999999998877665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.94  E-value=3.1e-05  Score=63.13  Aligned_cols=92  Identities=25%  Similarity=0.259  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      ..-.+|..+...|++++|.+.|+.+.+.. .++.-..-.++-|+.+++-+|+|++|++ .+...++   +-+......+|
T Consensus        50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~G  125 (145)
T PF09976_consen   50 AALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLG  125 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHH
Confidence            45567888889999999999999999755 3343345577889999999999999998 6554433   34556778899


Q ss_pred             HHHHhhCh-HHHHHHHHH
Q 024174          238 IIYTMLNM-EEAKKWWEE  254 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~  254 (271)
                      -||.-.|+ ++|.+.|++
T Consensus       126 di~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  126 DIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHCCCHHHHHHHHHH
Confidence            99999999 999999975

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.93  E-value=9.6e-05  Score=60.99  Aligned_cols=95  Identities=13%  Similarity=0.098  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      .-..+..+...|++++|++.++.+..   .+|. -.++-+.++.++..+|+|++|+. |+....-+  |.|...++..|+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~  100 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVM---AQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGV  100 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHH
Confidence            44568889999999999999998773   3443 45677889999999999999999 88877666  999999999999


Q ss_pred             HHHhhCh-HHHHHHHHHHHhhcC
Q 024174          239 IYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +|..+|+ +||.+.|++-.++.|
T Consensus       101 ~l~~~g~~~eAi~~~~~Al~~~p  123 (144)
T PRK15359        101 CLKMMGEPGLAREAFQTAIKMSY  123 (144)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999 999999999999988

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.87  E-value=0.00022  Score=53.39  Aligned_cols=100  Identities=19%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---CCchh
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---GRFPF  234 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~R~~L  234 (271)
                      .+-..+..+...|+.++|.+.++.+.+....+ ....+..+.++.++.-.|+|++|++ ++++....  |.+   ....+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~   80 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHH
Confidence            45677888899999999999999888643221 2235678889999999999999999 77777654  442   34466


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      .-|.+|.-+++ ++|.+++++..+..|.
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            67888888899 9999999999999884

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.82  E-value=3.2e-05  Score=54.44  Aligned_cols=60  Identities=23%  Similarity=0.251  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          199 MALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       199 mllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +.++..++.+|+|++|.. ++++.+.+  |.+....+..|-||...++ ++|..+|++..++.|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            457888999999999999 78899888  9999999999999999999 999999999998888

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.75  E-value=5.3e-05  Score=53.97  Aligned_cols=58  Identities=29%  Similarity=0.238  Sum_probs=54.1

Q ss_pred             HHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          201 LVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       201 lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.++++.+++|++|++ ++.+..-+  |.|...++.+|++|-.+++ ++|.+.|+++.+..|
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            4689999999999999 77888777  9999999999999999999 999999999999988

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.74  E-value=0.00016  Score=68.32  Aligned_cols=97  Identities=19%  Similarity=0.148  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      .|...|..+...|++++|++.+++|++.   +|.. ..+...++.+++.+|+|++|+. ++...+-+  |.+...|+-.|
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg   77 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDL---DPNN-AELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKG   77 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence            4777899999999999999999999963   3322 3456788899999999999999 77887777  89999999999


Q ss_pred             HHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          238 IIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ++|..+++ ++|.+++++-.++-|.
T Consensus        78 ~~~~~lg~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         78 TACMKLEEYQTAKAALEKGASLAPG  102 (356)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            99999999 9999999999998873

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.72  E-value=0.00038  Score=60.75  Aligned_cols=102  Identities=11%  Similarity=0.035  Sum_probs=87.1

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH-hcc--hHHHhh-hhhhcccCCCCCCC
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY-QGK--YREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~-qGk--~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      ++.+....++..++..|+.++|++.+++|++..   | +.-++...+++++.+ .|+  +++|.+ +.+....+  |.|.
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~  144 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---G-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEV  144 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCCh
Confidence            356678888889999999999999999888533   3 345677888998865 477  599999 88888888  9999


Q ss_pred             CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174          231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDDE  262 (271)
Q Consensus       231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~  262 (271)
                      +.+...|++|-.++. ++|.++|++-.++.|++
T Consensus       145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        145 TALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999999 99999999999999964

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.65  E-value=0.00053  Score=55.03  Aligned_cols=98  Identities=14%  Similarity=0.108  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      .....+..+...|+.++|.+.++++++..  +..........++.++..+|++++|.. +......+  |.+...++..|
T Consensus       101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la  176 (234)
T TIGR02521       101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELA  176 (234)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHH
Confidence            34455666666777777777777776421  112223344556777788888888888 66666555  67777888888


Q ss_pred             HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          238 IIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+|...++ ++|.++++++.++.+
T Consensus       177 ~~~~~~~~~~~A~~~~~~~~~~~~  200 (234)
T TIGR02521       177 ELYYLRGQYKDARAYLERYQQTYN  200 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88888888 888888888887743

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.61  E-value=0.00048  Score=55.28  Aligned_cols=100  Identities=18%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .......+..+...|+.++|.+.++++++....    ...+...++.++..+|+|++|.+ ++...+....+.+.+.+..
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            344555666777777777777777777754322    12355566777777788888877 5554443212444555666


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -|.+|..+++ ++|.+++++-.+..|
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            6777777777 888888877776655

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.47  E-value=0.0002  Score=50.66  Aligned_cols=62  Identities=24%  Similarity=0.257  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhC-h-HHHHHHHHHHHhhcC
Q 024174          197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLN-M-EEAKKWWEEFAETID  260 (271)
Q Consensus       197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~-k-~EA~k~we~f~~lv~  260 (271)
                      +-..++++++.+|+|++|++ |++..+-+  |.+...+...|++|..++ + ++|.+.|++-.++-|
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34568899999999999999 77777667  899999999999999999 7 999999999888754

...

>PRK15331 chaperone protein SicA; Provisional

Probab=97.42  E-value=0.0015  Score=57.54  Aligned_cols=101  Identities=16%  Similarity=0.226  Sum_probs=82.3

Q ss_pred             CCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hh-hhcccCCCC
Q 024174          150 PGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CN-CLKDEQRIP  227 (271)
Q Consensus       150 ~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~-~L~~e~~~p  227 (271)
                      .+-|+++.+.|=..|-.+-.+|++++|..+-.-.   |.-++.+.+++ |.|+-.+-.+|+|++|+. |. +.. -+  +
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L---~~~d~~n~~Y~-~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~--~  102 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFL---CIYDFYNPDYT-MGLAAVCQLKKQFQKACDLYAVAFT-LL--K  102 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHhCcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-cc--c
Confidence            3456788999999999999999999998877633   23466555555 999999999999999999 66 322 12  5


Q ss_pred             CCCCchhHHHHHHHhhCh-HHHHHHHHHHHh
Q 024174          228 SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAE  257 (271)
Q Consensus       228 ~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~  257 (271)
                      .|.||++|=|+-|-+|++ ++|+++|+.=.+
T Consensus       103 ~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        103 NDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            899999999999999999 999999986444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.40  E-value=0.0018  Score=56.57  Aligned_cols=101  Identities=15%  Similarity=0.014  Sum_probs=80.3

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      +|+.+.|=..|..|...|+.++|.+.-+-..   .-|+.... .=|-|+=++=.+|+|++|+. |+.-.--+  |.|.|+
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~-y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~  105 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFD-YWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQA  105 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchH
Confidence            5788999999999999999999998877443   33543222 22455556677899999999 77544334  899999


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+-|+.|-++++ ++|++.|+.=.+.+.
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            9999999999999 999999998777764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.35  E-value=0.00061  Score=61.81  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCC----CCCC
Q 024174          158 NAIKAEAVKQMKY-GKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQR----IPSD  229 (271)
Q Consensus       158 ~~lk~~A~~L~kS-gk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~----~p~D  229 (271)
                      ..+...|..+.+. |++++|++..++|.+.++.+.  ..+.++..-++++++..|+|++|++ |+++....+    ..-.
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            3477888888888 999999999999999998774  6777888899999999999999999 776554321    1113


Q ss_pred             CCchhH-HHHHHHhhCh-HHHHHHHHHHHhhcCCCCCCCCC
Q 024174          230 GRFPFY-KAIIYTMLNM-EEAKKWWEEFAETIDDEEFDPTK  268 (271)
Q Consensus       230 ~R~~L~-k~IIYtmL~k-~EA~k~we~f~~lv~~~~f~~~~  268 (271)
                      .|-++. .+|+|-..+. -.|.+.|++|.+..|  .|....
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~--~F~~s~  233 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDP--SFASSR  233 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST--TSTTSH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCCCcH
Confidence            455554 5555666666 999999999999987  566543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.34  E-value=0.00026  Score=49.77  Aligned_cols=57  Identities=28%  Similarity=0.461  Sum_probs=46.5

Q ss_pred             HHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC
Q 024174          167 QMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD  229 (271)
Q Consensus       167 L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D  229 (271)
                      |++.|++++|++.++++++.   +|+ ..++++.++++++-+|++++|.. ++.+...+  |.|
T Consensus         1 ll~~~~~~~A~~~~~~~l~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~   58 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR---NPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDN   58 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH---TTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTH
T ss_pred             ChhccCHHHHHHHHHHHHHH---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCH
Confidence            56789999999999999853   343 56788899999999999999999 77888777  554

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.32  E-value=0.0024  Score=53.37  Aligned_cols=105  Identities=14%  Similarity=0.153  Sum_probs=81.0

Q ss_pred             ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174          153 SAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       153 s~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      +.........++..+...|+.++|++.++++++.... +.+...+-..++.++...|+|++|+. ++...+..  |.+.+
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~  107 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPS  107 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHH
Confidence            3345556788999999999999999999999875432 22234567788999999999999999 66666555  88888


Q ss_pred             chhHHHHHHHhhCh---------------HHHHHHHHHHHhhcC
Q 024174          232 FPFYKAIIYTMLNM---------------EEAKKWWEEFAETID  260 (271)
Q Consensus       232 ~~L~k~IIYtmL~k---------------~EA~k~we~f~~lv~  260 (271)
                      .+...|.+|.-+++               ++|.++|++-.++-|
T Consensus       108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603        108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence            88889999988765               467777777666555

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.23  E-value=0.0028  Score=61.03  Aligned_cols=99  Identities=12%  Similarity=0.144  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      ....+...+..+...|+.++|.+.++.+.+..   |.. .+..+.+++++..+|+|++|++ +++..+.+  |.+.+.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~  197 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAID---PRS-LYAKLGLAQLALAENRFDEARALIDEVLTAD--PGNVDALL  197 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC-hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence            34445566666777788888888888776532   221 2345677777777788888877 55665555  67777777


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|...++ ++|.++|++-.++.|
T Consensus       198 ~~~~~~~~~g~~~~A~~~~~~a~~~~p  224 (899)
T TIGR02917       198 LKGDLLLSLGNIELALAAYRKAIALRP  224 (899)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence            77777777777 777777777766655

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.23  E-value=0.0026  Score=58.64  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=76.7

Q ss_pred             HHHHHHHHH-HhcCChhHHHHHHHHHHHHhhcCCCcc--cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---CC
Q 024174          159 AIKAEAVKQ-MKYGKPEFAVTLLKKVYEDCKNEPEPA--YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---GR  231 (271)
Q Consensus       159 ~lk~~A~~L-~kSgk~deave~Le~A~eka~~e~eea--ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~R  231 (271)
                      ..=..|..| .+.|++++|.+.++..++..   |...  .+....+++.+..+|+|++|+. ++.+++..  |.+   .-
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~d  218 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAAD  218 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhH
Confidence            334455555 66799999999998877544   5443  4888999999999999999999 66787654  433   33


Q ss_pred             chhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          232 FPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ..+..|.||.-+++ ++|.+.+++..+..|.
T Consensus       219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            34557899988999 9999999999999884

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.22  E-value=0.0032  Score=53.93  Aligned_cols=103  Identities=14%  Similarity=0.155  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC---
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR---  231 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R---  231 (271)
                      ..+.+-..+..+...|+.++|.+.++++++....+ .........+++++..+|+|++|+. ++.+....  |.+..   
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~  108 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY  108 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence            35567888889999999999999999887643222 2334567889999999999999999 88888776  76665   


Q ss_pred             chhHHHHHHHhh--------Ch-HHHHHHHHHHHhhcCC
Q 024174          232 FPFYKAIIYTML--------NM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       232 ~~L~k~IIYtmL--------~k-~EA~k~we~f~~lv~~  261 (271)
                      .++..|.+|.-+        ++ ++|.+.++++.+..|.
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            467788888765        66 9999999999988884

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.12  E-value=0.0028  Score=57.55  Aligned_cols=102  Identities=10%  Similarity=-0.050  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e-eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      ......++..+.+.|+.++|++.++.+.+....+.. ..-.+...++.++..+|++++|.+ +++..+.+  |.+.+.++
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~  218 (389)
T PRK11788        141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASI  218 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHH
Confidence            344556666666777777777777765542211111 111233456666677777777777 55655544  66677777


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|.-.++ ++|.++|++..+..|
T Consensus       219 ~la~~~~~~g~~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        219 LLGDLALAQGDYAAAIEALERVEEQDP  245 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence            77777777777 777777777766544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.11  E-value=0.0028  Score=61.05  Aligned_cols=98  Identities=17%  Similarity=0.111  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ...+-..|..+...|++++|.+.++++.+..   |. .....+.++.++..+|++++|+. +++..+.+  |.|.+.++.
T Consensus       159 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~  232 (899)
T TIGR02917       159 LYAKLGLAQLALAENRFDEARALIDEVLTAD---PG-NVDALLLKGDLLLSLGNIELALAAYRKAIALR--PNNPAVLLA  232 (899)
T ss_pred             hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHH
Confidence            4457788888999999999999999887642   32 23466777888888999999998 66776666  888888888


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+.+|.-.++ ++|.+.+++..+..|
T Consensus       233 ~~~~~~~~g~~~~A~~~~~~~~~~~~  258 (899)
T TIGR02917       233 LATILIEAGEFEEAEKHADALLKKAP  258 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            8888888888 888888888877766

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK12370 invasion protein regulator; Provisional

Probab=97.11  E-value=0.0032  Score=62.37  Aligned_cols=94  Identities=16%  Similarity=0.073  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      ...++..+...|+.++|.+.+++|++..   |... ..-..++.++..+|+++||+. ++....-+  |.+...+..++.
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~-~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~  414 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLS---PISA-DIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLW  414 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHH
Confidence            4445555666677777777777776532   2211 123445666666777777776 55555555  665555555565


Q ss_pred             HHHhhCh-HHHHHHHHHHHhhc
Q 024174          239 IYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~lv  259 (271)
                      ++..+++ +||.+++++.....
T Consensus       415 ~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        415 ITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             HHHhccCHHHHHHHHHHHHHhc
Confidence            6666666 66666666655443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.05  E-value=0.0057  Score=63.04  Aligned_cols=106  Identities=9%  Similarity=-0.002  Sum_probs=91.2

Q ss_pred             CCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC
Q 024174          150 PGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS  228 (271)
Q Consensus       150 ~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~  228 (271)
                      ..|+..........|..+...|+.++|++.|+++.+.   .|.. ..+.+.++.++.-+|++++|++ ++.....+  |.
T Consensus       352 ~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd  425 (765)
T PRK10049        352 SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGN-QGLRIDYASVLQARGWPRAAENELKKAEVLE--PR  425 (765)
T ss_pred             CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC
Confidence            4555455667778899999999999999999998864   3444 5699999999999999999999 77777777  99


Q ss_pred             CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          229 DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       229 D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      |....+.+|.++--+++ ++|++..++..+..|.
T Consensus       426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999 9999999999998883

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.05  E-value=0.0042  Score=61.69  Aligned_cols=95  Identities=15%  Similarity=0.059  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      ....+..+...|+.++|++.++++++.   +|. ..+..+.++.++..+|+|++|+. ++...+.+  |.|...+...|.
T Consensus       334 ~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~  407 (615)
T TIGR00990       334 LNLRGTFKCLKGKHLEALADLSKSIEL---DPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQ  407 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            344455556678888999888888853   232 23345677888888899999998 66666666  888888888899


Q ss_pred             HHHhhCh-HHHHHHHHHHHhhcC
Q 024174          239 IYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +|..+++ ++|.++|++-.++-|
T Consensus       408 ~~~~~g~~~~A~~~~~kal~l~P  430 (615)
T TIGR00990       408 LHFIKGEFAQAGKDYQKSIDLDP  430 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCc
Confidence            9988888 999999888888877

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.02  E-value=0.0028  Score=57.56  Aligned_cols=94  Identities=14%  Similarity=0.049  Sum_probs=39.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc-----hh
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF-----PF  234 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~-----~L  234 (271)
                      ..++..+...|+.++|++.++++.+.   ++ ........++.++..+|+|++|++ ++.+.+..  |.+.+.     ++
T Consensus       111 ~~La~~~~~~g~~~~A~~~~~~~l~~---~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~  184 (389)
T PRK11788        111 QELGQDYLKAGLLDRAEELFLQLVDE---GD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG--GDSLRVEIAHFYC  184 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcC---Cc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence            33344444444444444444444321   11 112233444455555555555555 33443332  222221     11


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -.|.+|.-.++ ++|.+.|++..+..|
T Consensus       185 ~la~~~~~~~~~~~A~~~~~~al~~~p  211 (389)
T PRK11788        185 ELAQQALARGDLDAARALLKKALAADP  211 (389)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence            12333334444 555555555554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.01  E-value=0.0011  Score=49.18  Aligned_cols=81  Identities=28%  Similarity=0.265  Sum_probs=59.0

Q ss_pred             cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HH
Q 024174          170 YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EE  247 (271)
Q Consensus       170 Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~E  247 (271)
                      .|.++.|+...++.++.-..++  ...+-+.+++.+..+|+|++|.. ++. .+-+  ++..+.....|-+|-=|++ +|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~e   76 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEE   76 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHH
Confidence            5788999999999987553322  33344457999999999999998 555 3223  4555556666999999999 99


Q ss_pred             HHHHHHHH
Q 024174          248 AKKWWEEF  255 (271)
Q Consensus       248 A~k~we~f  255 (271)
                      |.+.++++
T Consensus        77 Ai~~l~~~   84 (84)
T PF12895_consen   77 AIKALEKA   84 (84)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99999875

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.95  E-value=0.0052  Score=61.04  Aligned_cols=96  Identities=10%  Similarity=0.055  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      .....+..+...|++++|++.++++++.   +|.. .++-..+++++..+|+|++|+. |+...+.+  |.+...++..|
T Consensus       367 ~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la  440 (615)
T TIGR00990       367 SYIKRASMNLELGDPDKAEEDFDKALKL---NSED-PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLG  440 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHH
Confidence            3445555566667777777777776653   2211 2344455556666666666665 44444333  44444444444


Q ss_pred             HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          238 IIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+|..+++ ++|...+++-.+..|
T Consensus       441 ~~~~~~g~~~eA~~~~~~al~~~P  464 (615)
T TIGR00990       441 VTQYKEGSIASSMATFRRCKKNFP  464 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCC
Confidence            44444444 444444444444433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.94  E-value=0.0043  Score=63.13  Aligned_cols=99  Identities=20%  Similarity=0.252  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +....-.++..+...|+.++|++.++.+++.   +|.. ..+...++.++.-+|+|++|+. |+.+...+  |.+...++
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~  356 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDL-PYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR  356 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence            4566778899999999999999999988863   3432 3467778999999999999999 77888776  77766666


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +.|.+|..+|+ +||.+++++..+.-|
T Consensus       357 ~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        357 YAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            67899999999 999999999988877

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.93  E-value=0.0024  Score=44.81  Aligned_cols=62  Identities=23%  Similarity=0.258  Sum_probs=50.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD  229 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D  229 (271)
                      ..|..+...|++++|++.++.+++   .+ -...++...++.++..+|++++|+. ++.+.+.+  |.|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~---~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~--P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK---QD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD--PDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC---CS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH---HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCC
Confidence            467889999999999999998884   23 3478899999999999999999999 77777666  654

>PRK12370 invasion protein regulator; Provisional

Probab=96.91  E-value=0.0054  Score=60.80  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      ...-.++..+...|+.++|++.++.|++.   +|.... ..+.++.++..+|+|+||.. ++++.+.+ .|.+...+.+.
T Consensus       373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~-~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~l  447 (553)
T PRK12370        373 DIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAA-AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQ  447 (553)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChh-hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHH
Confidence            34566788888999999999999999853   454321 22334556778999999999 66766553 15566668889


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+|..+|+ +||.++++++...-|
T Consensus       448 a~~l~~~G~~~eA~~~~~~~~~~~~  472 (553)
T PRK12370        448 VMFLSLKGKHELARKLTKEISTQEI  472 (553)
T ss_pred             HHHHHhCCCHHHHHHHHHHhhhccc
Confidence            999999999 999999998766544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.89  E-value=0.0058  Score=54.23  Aligned_cols=99  Identities=27%  Similarity=0.233  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +..-+...|....+.|+.++|++.+++|++.   +|. ..++...++-+++-.|++++|.. +..+.+..  |+|.+...
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~  218 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALEL---DPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWD  218 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHH
Confidence            4556778888889999999999999999863   333 23467778889999999999777 66777666  78888888


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-|..|.-|+. ++|-.+|++-....|
T Consensus       219 ~la~~~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  219 ALAAAYLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHhccccccccccccccccccccc
Confidence            88999999999 999999999888877

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.87  E-value=0.0077  Score=55.04  Aligned_cols=97  Identities=14%  Similarity=0.050  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      ..-..++.....|+.++|+..+++|++.   +|.. ...-..++.++..+|+|++|+. ++...+-+  |.+.-.++..|
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg  139 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALAL---RPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRG  139 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            3556667777788888888888877753   3322 3445667788888888888888 66666555  77777888888


Q ss_pred             HHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          238 IIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ++|.-.+. +||.+.|+++.++-|.
T Consensus       140 ~~l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189        140 IALYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            88888888 8888888888887773

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.81  E-value=0.0041  Score=41.48  Aligned_cols=62  Identities=27%  Similarity=0.267  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      -..++.++..+|++++|.. +++..+..  |.+...++..|.+|.-.+. ++|.+++++.....+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            4567888899999999999 66777666  7777888899999999999 9999999998887773

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.68  E-value=0.0087  Score=64.32  Aligned_cols=103  Identities=11%  Similarity=0.041  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc----------ccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP----------AYNVEMALVEILIYQGKYREALE-CNCLKDEQ  224 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee----------aynirmllvEilI~qGk~~EAL~-~~~L~~e~  224 (271)
                      +.+.+..++..+...|+.++|.+.++++++...+....          .|.+.+..+++++.+|++++|.. |++....+
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45567788888888899999999999888654332221          24455666888888999999999 77877777


Q ss_pred             CCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          225 RIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       225 ~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                        |.|...++..|-+|...++ +||.+++++=.++-|
T Consensus       382 --P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p  416 (1157)
T PRK11447        382 --NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP  416 (1157)
T ss_pred             --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence              8888888888999999999 999999888777666

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.64  E-value=0.0014  Score=46.02  Aligned_cols=54  Identities=24%  Similarity=0.304  Sum_probs=48.8

Q ss_pred             HHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          205 LIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       205 lI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ++-+|+|++|+. ++.+.+.+  |.|....+.-|.+|.-.+. ++|++.|++....-|
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            467899999999 88999888  9999999999999999999 999999999888877

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.60  E-value=0.0031  Score=52.04  Aligned_cols=75  Identities=20%  Similarity=0.170  Sum_probs=61.3

Q ss_pred             HHHHHHhhc-CCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHh
Q 024174          181 KKVYEDCKN-EPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAE  257 (271)
Q Consensus       181 e~A~eka~~-e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~  257 (271)
                      +..++.+-+ +|+..+    ..+..+..+|+|++|+. |+.+...+  |.|.+.+.-.|.++..+++ ++|..+|++=.+
T Consensus        13 ~~~~~~al~~~p~~~~----~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         13 EDILKQLLSVDPETVY----ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHcCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            334444333 465433    35788888999999999 77888888  9999999999999999999 999999999998


Q ss_pred             hcCC
Q 024174          258 TIDD  261 (271)
Q Consensus       258 lv~~  261 (271)
                      +-|.
T Consensus        87 l~p~   90 (144)
T PRK15359         87 LDAS   90 (144)
T ss_pred             cCCC
Confidence            8883

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.57  E-value=0.027  Score=46.61  Aligned_cols=106  Identities=13%  Similarity=0.064  Sum_probs=76.1

Q ss_pred             CChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174          152 PSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       152 Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      .+..........+......|++++|+..++.|+.... ++...-.+-..++.++..+|++++|++ |......+  |...
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~  106 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLP  106 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcH
Confidence            3344566678889999999999999999999987532 222222356678899999999999999 66555444  6667


Q ss_pred             CchhHHHHHHH-------hhCh-H-------HHHHHHHHHHhhcC
Q 024174          231 RFPFYKAIIYT-------MLNM-E-------EAKKWWEEFAETID  260 (271)
Q Consensus       231 R~~L~k~IIYt-------mL~k-~-------EA~k~we~f~~lv~  260 (271)
                      ..+..-|.||.       .+++ +       +|..+|++-..+-|
T Consensus       107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p  151 (168)
T CHL00033        107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP  151 (168)
T ss_pred             HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            77888899999       4455 5       55555555555555

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.53  E-value=0.02  Score=46.16  Aligned_cols=103  Identities=21%  Similarity=0.238  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--C-cc---------------cchHHHHHHHHHHhcchHHHhh-
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--E-PA---------------YNVEMALVEILIYQGKYREALE-  216 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--e-ea---------------ynirmllvEilI~qGk~~EAL~-  216 (271)
                      .|..+-..|......+..+.+.+.+++|+..++.+.  . +.               .++-..+++.+.-+|++++|+. 
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            455666678888888999999999999999988662  1 00               1122345666777899999999 


Q ss_pred             hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          217 CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       217 ~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |+.+...+  |-|-+.+....-+|.-.|. .+|.+.+++|++..-
T Consensus        85 ~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   85 LQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             HHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            88999888  9999999999999999999 999999999988765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.53  E-value=0.024  Score=48.51  Aligned_cols=99  Identities=21%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH--------hcchHHHhh-hhhhcccCCCCCC
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY--------QGKYREALE-CNCLKDEQRIPSD  229 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~--------qGk~~EAL~-~~~L~~e~~~p~D  229 (271)
                      ..-.++.-+...|+.++|.+.++++++..-+++... +.-..++.++..        +|++++|.+ ++.+.+.+  |.+
T Consensus        72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~  148 (235)
T TIGR03302        72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD-YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNS  148 (235)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH-HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCC
Confidence            345566777777888888888887776554333221 112222333322        266667776 55555554  554


Q ss_pred             CCch-----------------hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 GRFP-----------------FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 ~R~~-----------------L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+..                 +..|-+|--.++ ++|..+++++.+..|
T Consensus       149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  197 (235)
T TIGR03302       149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP  197 (235)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence            3321                 233444545556 666666666666665

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR00540 hemY_coli hemY protein

Probab=96.51  E-value=0.018  Score=54.71  Aligned_cols=94  Identities=17%  Similarity=0.123  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      .--.|.-....|+.+.|.+.|+.+.+   ..|...-.+++..+++++.+|+|++|+. .+.+.+.+  |+|.......+.
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~---~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~  195 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAE---LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEE  195 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            33666777888999999999999864   2344444678888999999999999999 77899888  999999999999


Q ss_pred             HHHhhCh-HHHHHHHHHHHhh
Q 024174          239 IYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~l  258 (271)
                      +|.-.+. ++|.+..+++.+.
T Consensus       196 ~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       196 AYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHhhHHHHHHHHHHHHHc
Confidence            9999999 9999999999977

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.44  E-value=0.011  Score=44.05  Aligned_cols=67  Identities=10%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC---CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCC
Q 024174          196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG---RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDDEEF  264 (271)
Q Consensus       196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~---R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f  264 (271)
                      ++...+++.+.-+|+|++|.+ |..+....  |.+.   ...+..|.+|.-.++ ++|.++|+++..+.|...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~   74 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK   74 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence            345677888889999999999 77887665  5543   356779999999999 9999999999999884333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.44  E-value=0.042  Score=47.69  Aligned_cols=105  Identities=20%  Similarity=0.262  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC---
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR---  231 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R---  231 (271)
                      +...+=..|..+...|++++|.+.++......-. ..-+.+.++.++..+..+|+|++|.. ++++.+.-  |..-+   
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~   80 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADY   80 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhh
Confidence            4567888999999999999999999987765432 35667889999999999999999999 88888776  77655   


Q ss_pred             chhHHHHHHHhhCh------------HHHHHHHHHHHhhcCCCC
Q 024174          232 FPFYKAIIYTMLNM------------EEAKKWWEEFAETIDDEE  263 (271)
Q Consensus       232 ~~L~k~IIYtmL~k------------~EA~k~we~f~~lv~~~~  263 (271)
                      -++.+|..|-.+.+            .+|...|++|.+..|...
T Consensus        81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence            45667777654432            488999999999999543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.41  E-value=0.036  Score=49.87  Aligned_cols=99  Identities=16%  Similarity=0.107  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC--c
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR--F  232 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R--~  232 (271)
                      ....+-.++..+...|+.++|.++++.+++...++    -.+-..+++++..+|+++||.. +++..+....+.+.+  .
T Consensus       113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            34556678888999999999999999999754333    3456778999999999999999 665554431123333  2


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~l  258 (271)
                      ++..|.+|.-.|+ ++|..++++....
T Consensus       189 ~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         189 WWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            4568999999999 9999999987543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.41  E-value=0.019  Score=54.66  Aligned_cols=96  Identities=7%  Similarity=-0.060  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +....-..|..+...|+.++|.+.|+++++   +.+    +-++++..-.+..|++++|++ ++.+.+..  |.|....+
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~----~~~l~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l  332 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY----DERLVLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWS  332 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC----CHHHHHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHH
Confidence            344566778899999999999999999986   222    225555555556799999999 77888777  99999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +.|-++.-.+. ++|+++||+-.+.-|
T Consensus       333 ~lgrl~~~~~~~~~A~~~le~al~~~P  359 (398)
T PRK10747        333 TLGQLLMKHGEWQEASLAFRAALKQRP  359 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            99999999999 999999999888777

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.23  E-value=0.019  Score=61.86  Aligned_cols=103  Identities=15%  Similarity=0.040  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccch--------------------------------------
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNV--------------------------------------  197 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeayni--------------------------------------  197 (271)
                      +...+..++..+...|+.++|.+.++++++..-.+....+.+                                      
T Consensus       384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~  463 (1157)
T PRK11447        384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDR  463 (1157)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence            345667788889999999999999999886432221111111                                      


Q ss_pred             HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -..+++++..+|++++|++ |++....+  |.|...++..|.+|.-+++ ++|.+.+++..++-|
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P  526 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP  526 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            1235667777899999999 77877777  9999999999999999999 999999999988776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.17  E-value=0.013  Score=57.30  Aligned_cols=84  Identities=23%  Similarity=0.163  Sum_probs=64.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174          163 EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT  241 (271)
Q Consensus       163 ~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt  241 (271)
                      +|..+...+++.+|++.|+++++   +.|.+ +++=.+-|+.|+.+|+|+.|++ .++.+.-.  |.||+...+-|-+|.
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~---~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALK---ENPQD-SELLNLQAEFLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYI  279 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHH---hCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence            56666667788899999999884   23433 4444445666888999999999 55777655  999999999999999


Q ss_pred             hhCh-HHHHHHH
Q 024174          242 MLNM-EEAKKWW  252 (271)
Q Consensus       242 mL~k-~EA~k~w  252 (271)
                      .++. |+|-.-=
T Consensus       280 ~~~d~e~ALlaL  291 (395)
T PF09295_consen  280 QLGDFENALLAL  291 (395)
T ss_pred             hcCCHHHHHHHH
Confidence            9999 9996443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.15  E-value=0.027  Score=58.77  Aligned_cols=96  Identities=9%  Similarity=0.041  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +++.+-.+|..++..|.+|+|+..|+.+++.+   |+- -..+..++.+|.-+++++||+. |+++.+-+  |..+...+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~-~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~  158 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDS-SEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL  158 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCc-HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence            46778889999999999999999999888644   322 2457788888888999999998 77888777  88888888


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHh
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAE  257 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~  257 (271)
                      -+|+.-.-+|+ +||..+|++=..
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHh
Confidence            88999999999 999888877665

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.12  E-value=0.028  Score=60.68  Aligned_cols=95  Identities=17%  Similarity=0.119  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ++-.=..+.++...|++++|++.++.+++   -+|.. ..+.+.|+++++.+|++++|+. +++.++-+  |.|++.++.
T Consensus        44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~---~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~  117 (987)
T PRK09782         44 IYPRLDKALKAQKNNDEATAIREFEYIHQ---QVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERS  117 (987)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH
Confidence            44466778888889999999999999985   45666 8888999999999999999999 66777777  888888887


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      -+.|    ++ ++|.++.|+-.++-|.
T Consensus       118 La~i----~~~~kA~~~ye~l~~~~P~  140 (987)
T PRK09782        118 LAAI----PVEVKSVTTVEELLAQQKA  140 (987)
T ss_pred             HHHh----ccChhHHHHHHHHHHhCCC
Confidence            6665    77 9999999988887773

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.12  E-value=0.013  Score=45.74  Aligned_cols=68  Identities=29%  Similarity=0.258  Sum_probs=58.2

Q ss_pred             CCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          190 EPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       190 e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +|+. .+....++..++.+|++++|+. ++++...+  |.+.+.+...|.+|..++. ++|.++|++-.+.-|
T Consensus        13 ~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552        13 DSEQ-LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             Chhh-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3443 4778899999999999999999 66777666  8999999999999999999 999999998877766

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.86  E-value=0.058  Score=55.78  Aligned_cols=95  Identities=20%  Similarity=0.174  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      .+..+|.-+...|+.++|++.++++++.   +|.. .++...++.++.-+|++++|+. ++++.+..  |.|.. ++-.|
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la  123 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQN-DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALA  123 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHH
Confidence            4777888888889999998888888753   3332 3455678888888899999988 77777776  88888 77778


Q ss_pred             HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          238 IIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+|...++ ++|.+.+++..++-|
T Consensus       124 ~~l~~~g~~~~Al~~l~~al~~~P  147 (765)
T PRK10049        124 YVYKRAGRHWDELRAMTQALPRAP  147 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCC
Confidence            88888888 889988888888877

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.81  E-value=0.017  Score=52.76  Aligned_cols=90  Identities=12%  Similarity=-0.017  Sum_probs=69.2

Q ss_pred             hcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-H
Q 024174          169 KYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-E  246 (271)
Q Consensus       169 kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~  246 (271)
                      .+++.+.++..+...+....-+++.--..-..++.++..+|++++|.. |++..+.+  |.+...+...|++|..+++ +
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~  115 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFD  115 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHH
Confidence            344667888888888765433333212223344556777899999999 77877777  9999999999999999999 9


Q ss_pred             HHHHHHHHHHhhcC
Q 024174          247 EAKKWWEEFAETID  260 (271)
Q Consensus       247 EA~k~we~f~~lv~  260 (271)
                      +|.++|++-.++-|
T Consensus       116 ~A~~~~~~Al~l~P  129 (296)
T PRK11189        116 AAYEAFDSVLELDP  129 (296)
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999998887

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.69  E-value=0.084  Score=47.78  Aligned_cols=102  Identities=13%  Similarity=0.140  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch---h
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP---F  234 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~---L  234 (271)
                      .+=+.|......|++++|++.++...+... +...+.+..+.++..+..+|+|++|.. ++++.+..  |.+-+..   .
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~--P~~~~~~~a~Y  110 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVLY  110 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--cCCCchHHHHH
Confidence            356789999999999999999998876443 235666778999999999999999999 77888777  7775544   4


Q ss_pred             HHHHHHHhh----------------ChH---HHHHHHHHHHhhcCCCC
Q 024174          235 YKAIIYTML----------------NME---EAKKWWEEFAETIDDEE  263 (271)
Q Consensus       235 ~k~IIYtmL----------------~k~---EA~k~we~f~~lv~~~~  263 (271)
                      .+|..+--+                |.+   +|-+.+++|.+..|..+
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            445554222                223   45566777777777443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.62  E-value=0.024  Score=50.33  Aligned_cols=92  Identities=22%  Similarity=0.169  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .+.+..++..+...|+.+++.+.|+...+...    ....+...++..+...|++++|+. +..+.+.+  |.|....+-
T Consensus       180 ~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~  253 (280)
T PF13429_consen  180 PDARNALAWLLIDMGDYDEAREALKRLLKAAP----DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLA  253 (280)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc----CHHHHHHHHHHHhcccccccccccccccccccc--ccccccccc
Confidence            34466777788899999988787776554442    223467788999999999999999 77888888  999999999


Q ss_pred             HHHHHHhhCh-HHHHHHHHH
Q 024174          236 KAIIYTMLNM-EEAKKWWEE  254 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~  254 (271)
                      -|-++...|. +||.+.-.+
T Consensus       254 ~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  254 YADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             HHHHHT--------------
T ss_pred             cccccccccccccccccccc
Confidence            9999999999 999765443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.60  E-value=0.073  Score=54.34  Aligned_cols=89  Identities=16%  Similarity=0.016  Sum_probs=41.9

Q ss_pred             HHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHH----Hhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174          166 KQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYRE----ALE-CNCLKDEQRIPSDGRFPFYKAIIY  240 (271)
Q Consensus       166 ~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~E----AL~-~~~L~~e~~~p~D~R~~L~k~IIY  240 (271)
                      .|...|+.++|.+.++.+++.   +|. ...+...++.++..+|++++    |+. |+.....+  |.|.+.+...|.+|
T Consensus       221 ~l~~~g~~~eA~~~~~~al~~---~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l  294 (656)
T PRK15174        221 TLCAVGKYQEAIQTGESALAR---GLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADAL  294 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Confidence            344555555555555555532   111 12333445555555555553    344 33443333  45555555555555


Q ss_pred             HhhCh-HHHHHHHHHHHhhcC
Q 024174          241 TMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       241 tmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-.++ +||..++++..++-|
T Consensus       295 ~~~g~~~eA~~~l~~al~l~P  315 (656)
T PRK15174        295 IRTGQNEKAIPLLQQSLATHP  315 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCC
Confidence            55555 555555555444444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.47  E-value=0.076  Score=47.77  Aligned_cols=85  Identities=20%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HH
Q 024174          170 YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EE  247 (271)
Q Consensus       170 Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~E  247 (271)
                      .++.+.+.+.++.    ............-.++.++..+|+|++|.+ +.+..+.+  |.|.-.+..-|.||...++ +|
T Consensus        93 ~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~e  166 (355)
T cd05804          93 SGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKE  166 (355)
T ss_pred             ccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHH
Confidence            4555555444442    222333444555677889999999999999 77777666  8998888899999999999 99


Q ss_pred             HHHHHHHHHhhcC
Q 024174          248 AKKWWEEFAETID  260 (271)
Q Consensus       248 A~k~we~f~~lv~  260 (271)
                      |.++.++-.++.|
T Consensus       167 A~~~l~~~l~~~~  179 (355)
T cd05804         167 GIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHhhhhccC
Confidence            9999999888876

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.33  E-value=0.09  Score=56.91  Aligned_cols=97  Identities=23%  Similarity=0.162  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      .....++..+.+.|+.++|++.++.+++.   +|... .+...++-++..+|++++|+. |+...+.+  |.|.-.+.-.
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~-~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nL  683 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNS-NYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQL  683 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            34566677778888888888888877753   34332 466777777778888888888 66666666  8888888888


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+|..+|+ +||..++++=.++-|
T Consensus       684 A~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        684 AYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            999998888 889888887776666

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.32  E-value=0.032  Score=39.28  Aligned_cols=59  Identities=22%  Similarity=0.166  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhc-chHHHhh-hhh
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQG-KYREALE-CNC  219 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qG-k~~EAL~-~~~  219 (271)
                      -......+..+...|++++|++.+++|++..   |+ ...+-.-++.++..+| ++++|++ ++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PN-NAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            3457788999999999999999999999864   33 2447777888899999 7999999 554

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.31  E-value=0.14  Score=54.61  Aligned_cols=97  Identities=10%  Similarity=0.058  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ...+..+|..+...|++++|++.++++++   .+|.. .++...++..+.-.|++++|++ ++.++..+  |. .+.++.
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~---~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~-~~~~l~  174 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLK---KDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERD--PT-VQNYMT  174 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cc-hHHHHH
Confidence            44566677788888888888888888875   34443 2333466777777888888888 66777666  44 455544


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+-||.-.++ .+|-+.+++-.++-|
T Consensus       175 layL~~~~~~~~~AL~~~ekll~~~P  200 (822)
T PRK14574        175 LSYLNRATDRNYDALQASSEAVRLAP  200 (822)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhCC
Confidence            4444444555 568888887777766

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.18  E-value=0.082  Score=56.20  Aligned_cols=94  Identities=9%  Similarity=-0.025  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~-eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      +..++..+...|+.++|++.++++.     ++ ...+...+++|.++..+|+|++|+. |+.+.+.+  |.|.-.++..+
T Consensus        71 v~dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa  143 (822)
T PRK14574         71 VDDWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMI  143 (822)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence            3366777777799999999999887     43 3445566667889999999999999 88998888  89866666666


Q ss_pred             HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          238 IIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+|.-+++ +||.+..++....-|
T Consensus       144 ~~y~~~~q~~eAl~~l~~l~~~dp  167 (822)
T PRK14574        144 MTQADAGRGGVVLKQATELAERDP  167 (822)
T ss_pred             HHHhhcCCHHHHHHHHHHhcccCc
Confidence            78888888 888888887776655

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.18  E-value=0.11  Score=54.25  Aligned_cols=100  Identities=10%  Similarity=-0.082  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      +.+.+....|..|.+.++.++|+.-.+.++.   .+ -+..+...++++.|+-.|+|+||.. |.++..++  |.+....
T Consensus       118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~  191 (694)
T PRK15179        118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGY  191 (694)
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHH
Confidence            4577899999999999999999999998884   23 3456788999999999999999999 88888766  8889999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +-.|+.+.=+|+ ++|.-.|++=-++..
T Consensus       192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        192 VGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            999999999999 999988876544443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.95  E-value=0.16  Score=36.57  Aligned_cols=60  Identities=25%  Similarity=0.177  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCccc---chHHHHHHHHHHhcchHHHhh
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAY---NVEMALVEILIYQGKYREALE  216 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeay---nirmllvEilI~qGk~~EAL~  216 (271)
                      ...+...+..+...|++++|.+.++++++.++.-+.+-.   ..---|+.++..+|++++|++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   67 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE   67 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            445778888899999999999999999998655444322   233456788888999999998

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.94  E-value=0.15  Score=48.62  Aligned_cols=90  Identities=16%  Similarity=0.104  Sum_probs=71.3

Q ss_pred             HHHHH-HhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174          163 EAVKQ-MKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIY  240 (271)
Q Consensus       163 ~A~~L-~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY  240 (271)
                      +|... ...|+.+.|.+.|++|.+   .+++..-..++..+++.+.+|++++|++ ++.+.+.+  |++-......+-+|
T Consensus       123 laA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~  197 (398)
T PRK10747        123 LAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAY  197 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence            44444 889999999999998874   3455555677778999999999999999 78888888  88887777888888


Q ss_pred             HhhCh-HHHHHHHHHHHh
Q 024174          241 TMLNM-EEAKKWWEEFAE  257 (271)
Q Consensus       241 tmL~k-~EA~k~we~f~~  257 (271)
                      .-.+. ++|.+..++-++
T Consensus       198 ~~~gdw~~a~~~l~~l~k  215 (398)
T PRK10747        198 IRTGAWSSLLDILPSMAK  215 (398)
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            88888 888855555543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.78  E-value=0.092  Score=54.23  Aligned_cols=101  Identities=18%  Similarity=0.126  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCccc---chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAY---NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeay---nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      .++.+.++-=..+.+.+|.+.+++|+++.+....+-.   -+...|+.++..+++|+||+. +++-.--+  |+|.+.|=
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--~k~~~~~a  493 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--PKDASTHA  493 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--CCchhHHH
Confidence            4667777777778999999999999988876543332   345678999999999999999 66533334  89999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      =-|.||.+|+. +.|-..|.|=--+-|.
T Consensus       494 sig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  494 SIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            99999999999 9999999986666553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.22  E-value=0.42  Score=38.92  Aligned_cols=98  Identities=21%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-CC--ch
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD-GR--FP  233 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D-~R--~~  233 (271)
                      +-..++.....++.+.+.+.++.-.+   +.+.  -+...+|.++++++.+|+|++|.. ++.+.+..  |.+ .+  -.
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~   88 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence            34445555567887777665554333   2332  466788999999999999999999 77777665  222 11  23


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCCCC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETIDDEEFDP  266 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f~~  266 (271)
                      |.-|-||.-.++ ++|.+..+.    ++...|.+
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~----~~~~~~~~  118 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQ----IPDEAFKA  118 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHh----ccCcchHH
Confidence            445777777788 999988755    44355544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.05  E-value=0.18  Score=52.40  Aligned_cols=106  Identities=22%  Similarity=0.328  Sum_probs=74.2

Q ss_pred             CCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC------CCcccc-----hHHHHHHHHHHhcchHHHhh
Q 024174          148 VPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE------PEPAYN-----VEMALVEILIYQGKYREALE  216 (271)
Q Consensus       148 ~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e------~eeayn-----irmllvEilI~qGk~~EAL~  216 (271)
                      +|..| +...+.+=++|-.|...|+++.|.+.|++|+..|++.      .+|++.     |++-|+=++-.+|+.+||+.
T Consensus       167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~  245 (652)
T KOG2376|consen  167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS  245 (652)
T ss_pred             ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            34444 3468889999999999999999999999998888753      234443     44555556677899999999


Q ss_pred             -hhhhcccCCCCCC-----------------CCc------hhHHHHHHHhhCh---HHHHHHHHHHH
Q 024174          217 -CNCLKDEQRIPSD-----------------GRF------PFYKAIIYTMLNM---EEAKKWWEEFA  256 (271)
Q Consensus       217 -~~~L~~e~~~p~D-----------------~R~------~L~k~IIYtmL~k---~EA~k~we~f~  256 (271)
                       |.++...+  |.|                 +..      -+.+-+.-++.+.   .=-++||+.|.
T Consensus       246 iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~  310 (652)
T KOG2376|consen  246 IYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY  310 (652)
T ss_pred             HHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence             88766555  333                 222      2466677777666   44567777764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.02  E-value=0.15  Score=36.01  Aligned_cols=64  Identities=22%  Similarity=0.255  Sum_probs=48.2

Q ss_pred             HHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          166 KQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       166 ~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .....++.++|++.++.+++.   +|+ ...+....+.++..+|+|++|+. ++...+.+  |.|.-....
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~---~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~~~~   68 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALEL---DPD-DPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPDARAL   68 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHh---Ccc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHHHHHH
Confidence            456788999999999988864   333 45566778999999999999999 77666666  666444433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=93.96  E-value=0.12  Score=46.97  Aligned_cols=99  Identities=27%  Similarity=0.301  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHh-cchHHHhh-hh---hhcccCCCCCCCCc
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAYNVEMALVEILIYQ-GKYREALE-CN---CLKDEQRIPSDGRF  232 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e--~eeaynirmllvEilI~q-Gk~~EAL~-~~---~L~~e~~~p~D~R~  232 (271)
                      +.. |..+.+..+.++|++.+++|.+.+.+.  +..+-.+...+++++--+ |++++|++ |+   +++.++-.+....-
T Consensus        78 ~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~  156 (282)
T PF14938_consen   78 YEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAE  156 (282)
T ss_dssp             HHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHH
Confidence            444 444445559999999999999998876  467777888999999999 99999999 77   45555412333333


Q ss_pred             -hhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          233 -PFYKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       233 -~L~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                       ++--|.+|.-+++ ++|-+.|++.-...
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence             3445778899999 99999999987653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.75  E-value=0.36  Score=39.90  Aligned_cols=89  Identities=21%  Similarity=0.260  Sum_probs=65.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC---CCCchhHHH
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS---DGRFPFYKA  237 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~---D~R~~L~k~  237 (271)
                      ..|.-+..-|++++|+..-+.|++.- -+.+......+-++..+...|+++||+. .++...+-  |.   +.+...+.+
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA   82 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence            45666777799999999999888621 1134446677888888999999999998 66666554  66   566667778


Q ss_pred             HHHHhhCh-HHHHHHHH
Q 024174          238 IIYTMLNM-EEAKKWWE  253 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we  253 (271)
                      +...-+++ +||-.+.-
T Consensus        83 l~L~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLL   99 (120)
T ss_pred             HHHHHCCCHHHHHHHHH
Confidence            88888888 88887764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.75  E-value=0.38  Score=42.55  Aligned_cols=104  Identities=21%  Similarity=0.272  Sum_probs=76.0

Q ss_pred             CCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hh---hhcccC
Q 024174          149 PPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CN---CLKDEQ  224 (271)
Q Consensus       149 ~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~---~L~~e~  224 (271)
                      +..|-.+.-..|.-.++-|..+|+.|.|+|...+|++.|-+. ..+||=|   +|-+-.||+-++||. ..   +|.+..
T Consensus        35 ~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r-aSayNNR---AQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   35 PDTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER-ASAYNNR---AQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             CchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc-hHhhccH---HHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            344555556678888899999999999999999999988433 4567766   789999999999995 33   233322


Q ss_pred             CCCCCCCc-hhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174          225 RIPSDGRF-PFYKAIIYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       225 ~~p~D~R~-~L~k~IIYtmL~k-~EA~k~we~f~~l  258 (271)
                        -+-++- |.-.|.||-++|. |.|.--||.=-+|
T Consensus       111 --trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  111 --TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             --chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence              222332 3345889999999 9999888865444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=93.12  E-value=0.071  Score=38.47  Aligned_cols=61  Identities=23%  Similarity=0.259  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhcchHHHhh-hhh-hcccCCCCCC----CCchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174          198 EMALVEILIYQGKYREALE-CNC-LKDEQRIPSD----GRFPFYKAIIYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       198 rmllvEilI~qGk~~EAL~-~~~-L~~e~~~p~D----~R~~L~k~IIYtmL~k-~EA~k~we~f~~l  258 (271)
                      -..|+.++..+|+|++|+. |++ |.-....+.|    +..+.--|.+|..+++ ++|.+++++=.++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3568999999999999999 553 2221111222    4556678999999999 9999999875544

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=92.78  E-value=0.15  Score=37.65  Aligned_cols=53  Identities=30%  Similarity=0.391  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE  216 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~  216 (271)
                      -+-++|.-+...|++++|.+.+++ .+   .++ ....+..++++.++-.|+|+||++
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LK---LDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HT---HHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hC---CCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            456689999999999999999987 21   112 225677788999999999999997

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=92.76  E-value=0.44  Score=41.67  Aligned_cols=84  Identities=13%  Similarity=0.139  Sum_probs=65.2

Q ss_pred             ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH-HHhhCh---H
Q 024174          172 KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII-YTMLNM---E  246 (271)
Q Consensus       172 k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II-YtmL~k---~  246 (271)
                      +.++++..|+.+++   .+|.. .+.-+.+++++..+|+|++|+. |.....-+  |.|...++-.|.+ |...|.   +
T Consensus        54 ~~~~~i~~l~~~L~---~~P~~-~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         54 TPEAQLQALQDKIR---ANPQN-SEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             hHHHHHHHHHHHHH---HCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcH
Confidence            44566666666653   34433 3467788999999999999999 77877666  9999999999986 566665   8


Q ss_pred             HHHHHHHHHHhhcCC
Q 024174          247 EAKKWWEEFAETIDD  261 (271)
Q Consensus       247 EA~k~we~f~~lv~~  261 (271)
                      +|.+..++..++-|.
T Consensus       128 ~A~~~l~~al~~dP~  142 (198)
T PRK10370        128 QTREMIDKALALDAN  142 (198)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999998883

>TIGR00540 hemY_coli hemY protein

Probab=92.73  E-value=0.36  Score=46.04  Aligned_cols=99  Identities=14%  Similarity=0.056  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--------------------------------CCccc--chHHHHH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--------------------------------PEPAY--NVEMALV  202 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e--------------------------------~eeay--nirmllv  202 (271)
                      ....-..|..+...|+.++|.+.|++++++.-.+                                ..+..  .+...++
T Consensus       263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg  342 (409)
T TIGR00540       263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALG  342 (409)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            3344555666677777777777777666532111                                01222  4566777


Q ss_pred             HHHHHhcchHHHhhhhh---hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174          203 EILIYQGKYREALECNC---LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       203 EilI~qGk~~EAL~~~~---L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~l  258 (271)
                      .+++.+|+|++|.+|-+   ..+.+  |.+ -.+.--|-+|--+|+ ++|.++|++-..+
T Consensus       343 ~l~~~~~~~~~A~~~le~a~a~~~~--p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       343 QLLMKHGEFIEAADAFKNVAACKEQ--LDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHcccHHHHHHHHHHhHHhhcC--CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            77777777777777444   33333  332 224455777777777 7777777765443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.65  E-value=2.2  Score=36.86  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC---chh
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR---FPF  234 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R---~~L  234 (271)
                      .|=+.|.....+|++++|++.|+.-.... =-++=+.+.+|-|+-.+..+|+|++|+. ++.+..-+  |.--.   -+.
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y   88 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYY   88 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHH
Confidence            47788999999999999999998544321 1146667999999999999999999999 88888776  55443   245


Q ss_pred             HHHHHHHhhCh-------------HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-------------EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-------------~EA~k~we~f~~lv~  260 (271)
                      .+|++|--.+.             .-+++-+..|.++|.
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~  127 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR  127 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence            67877766531             445566666666554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.60  E-value=0.27  Score=51.27  Aligned_cols=105  Identities=21%  Similarity=0.101  Sum_probs=82.2

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      ..-++-=++-+.-.|.+|.+.|.=-+++|++    =.-...-+-.-+..++-..|+.|+||. ++.=..-+  |+|-=+-
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~  560 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCK  560 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhc----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhH
Confidence            4455566777777888999999888888874    222334455567778888899999998 66544445  8998888


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCCC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETIDDEEFD  265 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f~  265 (271)
                      +.+|-|+.-|++ +||-+-.|+-+++||+|.+-
T Consensus       561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v  593 (638)
T KOG1126|consen  561 YHRASILFSLGRYVEALQELEELKELVPQESSV  593 (638)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence            899999999999 99999999999999976553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=92.59  E-value=0.37  Score=45.79  Aligned_cols=83  Identities=17%  Similarity=0.054  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ....-..|..+...|++++|+..++.|++..   |. .......++.++...|+|++|+. |+....-+  |.|.+...+
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--P~~~~~~~~  109 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELD---PS-LAKAYLRKGTACMKLEEYQTAKAALEKGASLA--PGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence            4457788888999999999999999998753   32 12234566888889999999999 77666666  899998888


Q ss_pred             HHHHHHhhCh
Q 024174          236 KAIIYTMLNM  245 (271)
Q Consensus       236 k~IIYtmL~k  245 (271)
                      .+.+...|.+
T Consensus       110 l~~~~~kl~~  119 (356)
T PLN03088        110 IKECDEKIAE  119 (356)
T ss_pred             HHHHHHHHHh
Confidence            8888777754

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=91.90  E-value=0.7  Score=45.51  Aligned_cols=97  Identities=21%  Similarity=0.198  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      ...+...+...+..++|.++|++-.+   ++|    ++-.+||++++..++-.+|.+ .++..+++  |.|.-.-..||=
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~---~~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~  242 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRE---RDP----EVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAE  242 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHh---cCC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            66777888888999999999997653   344    367889999999999999999 66666666  899777777887


Q ss_pred             HHHhhCh-HHHHHHHHHHHhhcCCCCCCC
Q 024174          239 IYTMLNM-EEAKKWWEEFAETIDDEEFDP  266 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~lv~~~~f~~  266 (271)
                      .+--.++ +.|.+.-++=-++.| .+|..
T Consensus       243 fLl~k~~~~lAL~iAk~av~lsP-~~f~~  270 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELSP-SEFET  270 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCc-hhHHH
Confidence            7777777 999999999999999 66654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=91.67  E-value=1.9  Score=44.03  Aligned_cols=82  Identities=24%  Similarity=0.185  Sum_probs=62.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174          163 EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT  241 (271)
Q Consensus       163 ~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt  241 (271)
                      ...-+.+-++..+|.+++++++.   .+|.. +=+++-++|+|+-.|+++||.+ .++...++  |.|.-.+=|=|=-|.
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~---l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~  419 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALA---LDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYA  419 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHh---cCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHH
Confidence            34456677888888888887773   34555 8889999999999999999988 66777777  888777777777777


Q ss_pred             hhCh-HHHHH
Q 024174          242 MLNM-EEAKK  250 (271)
Q Consensus       242 mL~k-~EA~k  250 (271)
                      .+++ .||..
T Consensus       420 ~~g~~~~a~~  429 (484)
T COG4783         420 ELGNRAEALL  429 (484)
T ss_pred             HhCchHHHHH
Confidence            7777 66554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=91.66  E-value=1.1  Score=45.56  Aligned_cols=103  Identities=22%  Similarity=0.237  Sum_probs=72.1

Q ss_pred             hhH-HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-C---cccchHHHHHHHHHHhcchHHHhh-hh-hhcccCCCC
Q 024174          155 EDV-NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-E---PAYNVEMALVEILIYQGKYREALE-CN-CLKDEQRIP  227 (271)
Q Consensus       155 e~v-~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~-e---eaynirmllvEilI~qGk~~EAL~-~~-~L~~e~~~p  227 (271)
                      .+| ..+-.+++....-+++++|++++.+|++....-+ +   -.-.++-=|++++..+|+|+||.+ +. .+..-.  -
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~--~  399 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR--E  399 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--h
Confidence            344 4488999999999999999999999999887433 2   334567779999999999999999 55 443332  2


Q ss_pred             CCCCchhHHHHH--------HHhhChHHHHHHHHHHHhhc
Q 024174          228 SDGRFPFYKAII--------YTMLNMEEAKKWWEEFAETI  259 (271)
Q Consensus       228 ~D~R~~L~k~II--------YtmL~k~EA~k~we~f~~lv  259 (271)
                      .+++-.-+=|+-        |.|-.++||.+-|++.+...
T Consensus       400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            445433332332        33333378888888877654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=91.60  E-value=0.32  Score=48.97  Aligned_cols=63  Identities=11%  Similarity=0.065  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhc
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLK  221 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~  221 (271)
                      +....-+++..|.+.|++++|+..++.|++.   +|.  +++..-.-++-.|..+|+++||+. +..-.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5677889999999999999999999999974   343  233444566777788999999998 45444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.37  E-value=0.45  Score=47.13  Aligned_cols=97  Identities=20%  Similarity=0.186  Sum_probs=63.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhc--CCCcccchHHHHHHHHHHhcchHHHhhhh-hhcccCCCCCCCCchhHHH
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKN--EPEPAYNVEMALVEILIYQGKYREALECN-CLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~--e~eeaynirmllvEilI~qGk~~EAL~~~-~L~~e~~~p~D~R~~L~k~  237 (271)
                      -..+-.....|+.++|++.++++.+...+  +.+..-..++  +=.++++++|++|..|. .|.+++. =+-+=.+..+|
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El--~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a  347 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFEL--AWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHH--HHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence            34456677789999999999998853322  1233333333  33488899999999955 8998872 23344556689


Q ss_pred             HHHHhhCh-H-------HHHHHHHHHHhhcC
Q 024174          238 IIYTMLNM-E-------EAKKWWEEFAETID  260 (271)
Q Consensus       238 IIYtmL~k-~-------EA~k~we~f~~lv~  260 (271)
                      +.|.|+++ +       +|.+++.+=-.+..
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            99999996 3       44455554444443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=91.15  E-value=0.29  Score=49.65  Aligned_cols=93  Identities=20%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      +-=.++.|..+|++++|++.|++.    .++.-+...+.-..|++++..|+++||.+ |..|.+.|  |.+...  |.++
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~----~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Y--y~~L   78 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKN----EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDY--YRGL   78 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhh----hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHH--HHHH
Confidence            344567889999999999999753    34566778888899999999999999999 88999999  766443  3343


Q ss_pred             HHHh------hC-h-HHHHHHHHHHHhhcC
Q 024174          239 IYTM------LN-M-EEAKKWWEEFAETID  260 (271)
Q Consensus       239 IYtm------L~-k-~EA~k~we~f~~lv~  260 (271)
                      .-.+      -+ . ++..+..+++.+-.|
T Consensus        79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp  108 (517)
T PF12569_consen   79 EEALGLQLQLSDEDVEKLLELYDELAEKYP  108 (517)
T ss_pred             HHHHhhhcccccccHHHHHHHHHHHHHhCc
Confidence            3333      12 2 555666666666665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.09  E-value=0.43  Score=43.74  Aligned_cols=95  Identities=20%  Similarity=0.168  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      ..-.+|...-..++.|+|+..|+.++..-+.+ -...=++|  |+-+++-+|++|+||+ .....+++   =..|.---+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR--LArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elr  165 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR--LARVQLQQKKADAALKTLDTIKEES---WAAIVAELR  165 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH--HHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHh
Confidence            35678888899999999999999998654443 24444455  4566778999999998 55666654   345667778


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhh
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~l  258 (271)
                      |=|+--+|+ +||..-|++=.+.
T Consensus       166 GDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         166 GDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHc
Confidence            888888999 9999999986554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.02  E-value=1.3  Score=41.57  Aligned_cols=104  Identities=21%  Similarity=0.266  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHH-HHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMA-LVEILIYQGKYREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirml-lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      +.++.||..-..|-+-|.+++|.+.-..|++.|..-++++|-|=.. =+=-+|.+++++.|.+ |..-..-+  |+--|.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kA  170 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKA  170 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHH
Confidence            5578899999999999999999999999999997777777765332 2445677899999999 88655445  888888


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+-.|-.|.=+++ +||-.-+.+-.++-|
T Consensus       171 l~RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  171 LERRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence            8888999999999 999776666665555

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=90.60  E-value=1.3  Score=48.06  Aligned_cols=87  Identities=28%  Similarity=0.256  Sum_probs=41.6

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccc--hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYN--VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeayn--irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      ++++.+..+|..|+.-|++.+|.+.|-...   .+  +..++  +=.-++++++-+|.|++|.. |.-.++.+-.--|+|
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~---~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R  486 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPIT---NR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR  486 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHh---cC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence            445555666666666666666555555332   11  12222  34445555555566666655 333222220123455


Q ss_pred             chhHHHHHHHhhCh-HHH
Q 024174          232 FPFYKAIIYTMLNM-EEA  248 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA  248 (271)
                      ..|  +=||+-+|+ |+|
T Consensus       487 i~L--asl~~~~g~~Eka  502 (895)
T KOG2076|consen  487 ITL--ASLYQQLGNHEKA  502 (895)
T ss_pred             hhH--HHHHHhcCCHHHH
Confidence            554  445555555 544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.07  E-value=0.53  Score=43.90  Aligned_cols=94  Identities=21%  Similarity=0.168  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      .+++-+|..+....+.+.+++.|++.+..  ........++++.+-|++..|++++||+ +.+-  ++     .=..+..
T Consensus        67 ~av~~la~y~~~~~~~e~~l~~l~~~~~~--~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~-----lE~~al~  137 (290)
T PF04733_consen   67 QAVRLLAEYLSSPSDKESALEELKELLAD--QAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GS-----LELLALA  137 (290)
T ss_dssp             HHHHHHHHHHCTSTTHHCHHHHHHHCCCT--S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TC-----HHHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHh--ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--Cc-----ccHHHHH
Confidence            45777888888767777777777755421  1122234588888899999999999997 4432  12     1133456


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-||=.+++ |.|++.++++++.-+
T Consensus       138 Vqi~L~~~R~dlA~k~l~~~~~~~e  162 (290)
T PF04733_consen  138 VQILLKMNRPDLAEKELKNMQQIDE  162 (290)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            668888888 999999999987644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=90.01  E-value=0.75  Score=46.82  Aligned_cols=95  Identities=26%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcC---CCccc-chHHHHHHHHHHhcchHHHhh-hh---hhcccCCCCCC--
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE---PEPAY-NVEMALVEILIYQGKYREALE-CN---CLKDEQRIPSD--  229 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e---~eeay-nirmllvEilI~qGk~~EAL~-~~---~L~~e~~~p~D--  229 (271)
                      +++.|..++..+++++|+.++++|+..-++-   .++.. .+=.=|+..+.-+|||+||.- |+   ++.........  
T Consensus       244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~  323 (508)
T KOG1840|consen  244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE  323 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence            6679999999999999999999998776532   23222 222235677888999999998 55   45555311222  


Q ss_pred             -CCchhHHHHHHHhhCh-HHHHHHHHH
Q 024174          230 -GRFPFYKAIIYTMLNM-EEAKKWWEE  254 (271)
Q Consensus       230 -~R~~L~k~IIYtmL~k-~EA~k~we~  254 (271)
                       +-....=+.|+.+.++ |||+++..+
T Consensus       324 v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  324 VAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence             2345567889999999 999876543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=87.55  E-value=2.5  Score=43.04  Aligned_cols=66  Identities=23%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCC
Q 024174          197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDDEEF  264 (271)
Q Consensus       197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f  264 (271)
                      +-..++|.+-+.|+|++|+. ++.-.+-.  |+-.=.|+.||-||-=.|. +||.++-++-|+|=.+|+|
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy  263 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY  263 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence            55788999999999999998 55333333  7777789999999999999 9999999999888776655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.55  E-value=2.5  Score=36.77  Aligned_cols=93  Identities=16%  Similarity=0.256  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhhh-hh---hcccCCCCCC--CC
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALEC-NC---LKDEQRIPSD--GR  231 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~~-~~---L~~e~~~p~D--~R  231 (271)
                      .....+|.-..+.|+.++|++....+.++|- .+..--++-+.++++-++.|+|....++ +.   +.++. -+.+  .|
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~nr  114 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHHHH
Confidence            4477888999999999999999999888763 2445556778888999999999998884 32   33331 0122  46


Q ss_pred             chhHHHHHHHhhCh-HHHHHHH
Q 024174          232 FPFYKAIIYTMLNM-EEAKKWW  252 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA~k~w  252 (271)
                      .-.|+|+-+-..++ ++|.+.|
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~f  136 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELF  136 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHH
Confidence            78899999999999 9998875

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.00  E-value=0.73  Score=28.33  Aligned_cols=30  Identities=27%  Similarity=0.264  Sum_probs=24.9

Q ss_pred             CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +.+..+|.||..++. ++|.++|++-.++-|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            456788899999999 999999998887765

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=86.86  E-value=1.3  Score=40.97  Aligned_cols=54  Identities=6%  Similarity=0.132  Sum_probs=47.4

Q ss_pred             HHhcchHHHhh-hhhhcccCCCCCCC---CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          206 IYQGKYREALE-CNCLKDEQRIPSDG---RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       206 I~qGk~~EAL~-~~~L~~e~~~p~D~---R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ..+|+|++|.. ++.+.+..  |.+.   ..++|.|-+|--.++ ++|.+.|+++.+..|.
T Consensus       154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~  212 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK  212 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            34699999998 88888877  7773   688999999999999 9999999999999884

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.71  E-value=3.2  Score=40.16  Aligned_cols=100  Identities=21%  Similarity=0.213  Sum_probs=76.3

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e-eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      .++-..||..-.++|+.+++.+||..-..|++.   +|+ ..|+-.=  |+.|+--|.|++|.+ |.-=...+  |.=.|
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNR--AAAy~~Lg~~~~AVkDce~Al~iD--p~ysk  150 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNR--AAAYSKLGEYEDAVKDCESALSID--PHYSK  150 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcchHHHHH--HHHHHHhcchHHHHHHHHHHHhcC--hHHHH
Confidence            344667999999999999999999998888853   454 3333332  567778899999999 88333334  78889


Q ss_pred             chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          232 FPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.==|.-|.=+|+ +||.+.|.+=-++-|
T Consensus       151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP  180 (304)
T KOG0553|consen  151 AYGRLGLAYLALGKYEEAIEAYKKALELDP  180 (304)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence            99999999999999 999988555444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.55  E-value=7.4  Score=36.84  Aligned_cols=101  Identities=18%  Similarity=0.137  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch---h
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP---F  234 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~---L  234 (271)
                      .+=..|..+-+||++++|..-..+=++++=+ ..=..|-.-.|.|.+.-||+|++|.. +-.++++-  |+--+-|   |
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~--P~s~KApdall  219 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY--PKSPKAPDALL  219 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC--CCCCCChHHHH
Confidence            3778899999999999998877755554422 23445667789999999999999999 66777776  7666663   4


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETIDDE  262 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~~  262 (271)
                      ==|.|-.=|++ ++|..-|++..+-+|..
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            44777777888 99999999999988853

>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family

Probab=86.53  E-value=1.2  Score=42.32  Aligned_cols=68  Identities=22%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDE  223 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e  223 (271)
                      .++..+-..|..+..+++.++|+.+|+....-+ .++-+-.+.|+++++++.-.|+++=|+. |++|..+
T Consensus       211 ~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~-~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~  279 (301)
T TIGR03362       211 SDWEELREEARALAAEGGLEAALQRLQQRLAQA-REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ  279 (301)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            457777788999999999999999999776533 3567888999999999999999999999 8888765

This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.33  E-value=1.7  Score=33.58  Aligned_cols=53  Identities=21%  Similarity=0.251  Sum_probs=42.0

Q ss_pred             hcCChhHHHHHHHHHHHHhhcCCCcc-----cchHHHHHHHHHHhcchHHHhh-hhhhc
Q 024174          169 KYGKPEFAVTLLKKVYEDCKNEPEPA-----YNVEMALVEILIYQGKYREALE-CNCLK  221 (271)
Q Consensus       169 kSgk~deave~Le~A~eka~~e~eea-----ynirmllvEilI~qGk~~EAL~-~~~L~  221 (271)
                      .+|++.+|++-|...++.+..+....     ..--+.+++++...|++++|++ +++-+
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi   68 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI   68 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            46899999999999999988775433     3444668999999999999998 66533

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=86.24  E-value=4.5  Score=41.15  Aligned_cols=92  Identities=20%  Similarity=0.147  Sum_probs=57.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cccchHHHHHHHHHHhcchHHHhh-hhh-------------------
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PAYNVEMALVEILIYQGKYREALE-CNC-------------------  219 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~e~e-eaynirmllvEilI~qGk~~EAL~-~~~-------------------  219 (271)
                      -.+...+..+|..++|.++++...+...-.|. +.|+   .|+.++...|+++||.+ +++                   
T Consensus       430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~---~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~  506 (697)
T PLN03081        430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA---CMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI  506 (697)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH---hHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence            34556677889999999988877654322332 2333   46677777777777765 332                   


Q ss_pred             -------------hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHh
Q 024174          220 -------------LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAE  257 (271)
Q Consensus       220 -------------L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~  257 (271)
                                   +.+-+  |.|...|..=.-+|.-.|+ +||.+.+++-++
T Consensus       507 ~g~~~~a~~~~~~l~~~~--p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        507 HKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             cCCcHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                         22222  5566666666666777777 777777766554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=86.13  E-value=6.2  Score=37.82  Aligned_cols=101  Identities=16%  Similarity=0.114  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcc---hHHHhh-hhhhcccCCCCCCCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGK---YREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk---~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      |+..--.++-.-|..|+.+.|+.-..+|+...    -+..++.+.++|+|+++.+   -.+|-+ ..+...-+  |.|.|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ir  228 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIR  228 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHH
Confidence            44556667777888899999988777777543    3445789999999999854   223333 44555556  99999


Q ss_pred             chhHHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174          232 FPFYKAIIYTMLNM-EEAKKWWEEFAETIDDE  262 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~  262 (271)
                      .-.|=|+.|-.=++ ++|-.-|+..-.+.|++
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            99999999999999 99999999999999976

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=85.59  E-value=0.71  Score=30.81  Aligned_cols=33  Identities=21%  Similarity=0.102  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174          197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      +.+.+++.+.-+|++++|.+ |+..+..+  |.|..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~   36 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPE   36 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHH
Confidence            45667777777777777777 66666655  66643

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=85.25  E-value=2  Score=25.76  Aligned_cols=28  Identities=18%  Similarity=0.265  Sum_probs=23.4

Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+..|.+|-.+++ ++|.+.|+++.+..|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            3567888888888 999999999888887

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=85.15  E-value=5  Score=33.20  Aligned_cols=60  Identities=25%  Similarity=0.264  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE  216 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~  216 (271)
                      ....+..++--+..-|++++|+.+|+++.+.. .+.+-.-.++..++-.|..+|+++||+.
T Consensus        37 ~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~~gr~~eAl~   96 (120)
T PF12688_consen   37 RRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALYNLGRPKEALE   96 (120)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHHCCCHHHHHH
Confidence            36678889999999999999999999887522 1122344677788889999999999998

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=84.99  E-value=2  Score=45.08  Aligned_cols=100  Identities=19%  Similarity=0.146  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +..-+--...-++..|+.|+|+.++++|+..=..++..    +-..+.+|+-.|+|+|||+ .++|+  +.+|.+.-.|.
T Consensus       522 nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~----~~~~~~il~~~~~~~eal~~LEeLk--~~vP~es~v~~  595 (638)
T KOG1126|consen  522 NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC----KYHRASILFSLGRYVEALQELEELK--ELVPQESSVFA  595 (638)
T ss_pred             chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh----HHHHHHHHHhhcchHHHHHHHHHHH--HhCcchHHHHH
Confidence            34445566677888899999999999998543333332    2345789999999999998 77887  44599999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      -=|-||--++. +-|.+.|--=.+|=|+
T Consensus       596 llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  596 LLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            99999999999 9999988666666553

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.82  E-value=1  Score=27.34  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=14.0

Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...|.+|-.+++ ++|.++|++-.++-|
T Consensus         5 ~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    5 YYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            344555555555 555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=84.32  E-value=2.4  Score=35.09  Aligned_cols=68  Identities=15%  Similarity=-0.004  Sum_probs=50.4

Q ss_pred             cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC-CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          193 PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS-DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       193 eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~-D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..-+..+.++..+..+|+|++|+. +....+...-+. ....+...|++|.-++. +||.+.+++-.++.|
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~  103 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP  103 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            345566777888888999999999 665443320011 23467888999999999 999999999887755

>PLN03218 maturation of RBCL 1; Provisional

Probab=83.43  E-value=8.9  Score=42.35  Aligned_cols=55  Identities=18%  Similarity=0.192  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh---HHHHHHHHHHH
Q 024174          199 MALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM---EEAKKWWEEFA  256 (271)
Q Consensus       199 mllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k---~EA~k~we~f~  256 (271)
                      -.|+.++...|++++|.+ ++++.+....| |  ...|-++|......   +||.+.|++-+
T Consensus       688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-d--vvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        688 SSLMGACSNAKNWKKALELYEDIKSIKLRP-T--VSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345555555666666666 44554333211 2  34455555554333   66666666543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=83.37  E-value=2  Score=44.24  Aligned_cols=89  Identities=21%  Similarity=0.234  Sum_probs=67.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHhhcCCCcccch-HHHHHHHHHHhcchHHHhh-hh-hhcccCCCCCCCCchhHHHHHH
Q 024174          164 AVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNV-EMALVEILIYQGKYREALE-CN-CLKDEQRIPSDGRFPFYKAIIY  240 (271)
Q Consensus       164 A~~L~kSgk~deave~Le~A~eka~~e~eeayni-rmllvEilI~qGk~~EAL~-~~-~L~~e~~~p~D~R~~L~k~IIY  240 (271)
                      ....-++|++.+|++.+.+|+++   +|++++-. --++  -++.-|.|.+||+ |+ |+..+   |.=.+.|+.||+++
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAa--c~~kL~~~~~aL~Da~~~ieL~---p~~~kgy~RKg~al  436 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAA--CYLKLGEYPEALKDAKKCIELD---PNFIKAYLRKGAAL  436 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHH--HHHHHhhHHHHHHHHHHHHhcC---chHHHHHHHHHHHH
Confidence            56677889999999999998864   46544322 2222  2445699999999 77 66553   78899999999999


Q ss_pred             HhhCh-HHHHHHHHHHHhhcC
Q 024174          241 TMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       241 tmL~k-~EA~k~we~f~~lv~  260 (271)
                      -++.+ ++|.+.|++=.++-|
T Consensus       437 ~~mk~ydkAleay~eale~dp  457 (539)
T KOG0548|consen  437 RAMKEYDKALEAYQEALELDP  457 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhcCc
Confidence            99999 999988877665544

>PLN03218 maturation of RBCL 1; Provisional

Probab=83.23  E-value=9.6  Score=42.09  Aligned_cols=62  Identities=16%  Similarity=0.123  Sum_probs=27.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ  224 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~  224 (271)
                      .+...+.+.|+.++|++++++..+.. ....+.-..--.|+..+...|++++|.+ ++++.+.+
T Consensus       547 sLI~a~~k~G~~deA~~lf~eM~~~~-~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        547 ALISACGQSGAVDRAFDVLAEMKAET-HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            33444455666666666666554311 1111111222234444555555555555 44444433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.21  E-value=3.9  Score=38.19  Aligned_cols=96  Identities=16%  Similarity=0.146  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          159 AIKAEAVKQMKYG-KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       159 ~lk~~A~~L~kSg-k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      +|...-+.|..-| ++.+|+-..++..+++.    +--.+-..++=.++.+|+|+||-. .++-.+.+  |.|.-.-..+
T Consensus       168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNl  241 (290)
T PF04733_consen  168 QLAEAWVNLATGGEKYQDAFYIFEELSDKFG----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANL  241 (290)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHH
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHH
Confidence            3444444444433 46666666665433221    112233345556677888888887 55544444  6777666777


Q ss_pred             HHHHHhhCh--HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM--EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k--~EA~k~we~f~~lv~  260 (271)
                      +.++.++|+  ++++++.++-++..|
T Consensus       242 iv~~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  242 IVCSLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             HHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHhCC
Confidence            777888888  678888887777766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=83.19  E-value=3.5  Score=34.40  Aligned_cols=64  Identities=22%  Similarity=0.199  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSD-GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D-~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ....++..+..+|+|++|+. |++..+...-+.+ .-.++-.|.+|.-+++ ++|.+++++-.++.|
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            45777888888999999999 6666544310111 2457778999999999 999999998877766

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=83.06  E-value=0.5  Score=30.57  Aligned_cols=16  Identities=44%  Similarity=0.605  Sum_probs=7.9

Q ss_pred             HHHHHHHhcchHHHhh
Q 024174          201 LVEILIYQGKYREALE  216 (271)
Q Consensus       201 lvEilI~qGk~~EAL~  216 (271)
                      |+.++.-+|+|++|..
T Consensus         5 Lg~~~~~~g~~~~Ai~   20 (36)
T PF13176_consen    5 LGRIYRQQGDYEKAIE   20 (36)
T ss_dssp             HHHHHHHCT-HHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            4455555555555555

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=82.51  E-value=11  Score=35.82  Aligned_cols=93  Identities=17%  Similarity=0.144  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHH--HHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMA--LVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirml--lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      -..+.-+..+|+.+.....+.......   + .  +..++  .+.-++-+|+|.+|.. .....--+  |.|.|.+==.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~-~--d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lg  141 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY---P-K--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLG  141 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC---c-c--cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHH
Confidence            667778888898888877777654322   1 1  22344  7788889999999999 77777666  99999999999


Q ss_pred             HHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          238 IIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      +||-=+|. ++|+.-+.+=.+|.|.
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPN  166 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccC
Confidence            99999999 9999988888888774

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=82.38  E-value=5.2  Score=32.07  Aligned_cols=59  Identities=25%  Similarity=0.269  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhh
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNC  219 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~  219 (271)
                      ++.+..++..+...|++++|++.++.++.   .+|-++. +-..+++.+..+|+..+|++ |+.
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~-~~~~lm~~~~~~g~~~~A~~~Y~~  121 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALA---LDPYDEE-AYRLLMRALAAQGRRAEALRVYER  121 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HH-HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHH-HHHHHHHHHHHCcCHHHHHHHHHH
Confidence            55688888888899999999999998884   4665544 33456789999999999999 764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=82.00  E-value=11  Score=33.25  Aligned_cols=78  Identities=22%  Similarity=0.303  Sum_probs=58.8

Q ss_pred             ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174          153 SAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       153 s~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      |.+-|+.|..++..=...++.+.+..+|. |+-..+=   +.-.+.+.-+.+||.+|+|+||+. ..++.++     ..+
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~-ALrvLRP---~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-----~~~   76 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLD-ALRVLRP---EFPELDLFDGWLHIVRGDWDDALRLLRELEER-----APG   76 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHH-HHHHhCC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCC
Confidence            34668888888888888888888888887 7655532   234578899999999999999998 5576543     356


Q ss_pred             chhHHHHH
Q 024174          232 FPFYKAII  239 (271)
Q Consensus       232 ~~L~k~II  239 (271)
                      .+++||+.
T Consensus        77 ~p~~kALl   84 (160)
T PF09613_consen   77 FPYAKALL   84 (160)
T ss_pred             ChHHHHHH
Confidence            67787765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=81.67  E-value=5.7  Score=43.24  Aligned_cols=107  Identities=16%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             CCCCCChhhHHHHH-HHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174          148 VPPGPSAEDVNAIK-AEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAYNVEMALVEILIYQGKYREALE-CNCLKDE  223 (271)
Q Consensus       148 ~~~~Ps~e~v~~lk-~~A~~L~kSgk~deave~Le~A~eka~~e--~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e  223 (271)
                      +++.|+....+.-. .+++-|.-- +..+.++-|..-+.  +++  +++.-++=+-+++.|+-.|+|.+|++ +..|.+.
T Consensus       367 ~~~~~~~~s~~l~v~rl~icL~~L-~~~e~~e~ll~~l~--~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~  443 (895)
T KOG2076|consen  367 LCEVGKELSYDLRVIRLMICLVHL-KERELLEALLHFLV--EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR  443 (895)
T ss_pred             cccCCCCCCccchhHhHhhhhhcc-cccchHHHHHHHHH--HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence            44455544433322 344444332 33444455544332  334  67777788889999999999999999 6688876


Q ss_pred             CCCCCCCC--chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          224 QRIPSDGR--FPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       224 ~~~p~D~R--~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                         |.+.+  .++=+|-.|-+|+. |+|.+++|+=-.+.|
T Consensus       444 ---~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p  480 (895)
T KOG2076|consen  444 ---EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP  480 (895)
T ss_pred             ---ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence               47888  55558999999999 999999999999988

>PLN03077 Protein ECB2; Provisional

Probab=81.61  E-value=9.1  Score=39.91  Aligned_cols=94  Identities=19%  Similarity=0.122  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHh-------------------------------h-cCCCcccchHHHHHHHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDC-------------------------------K-NEPEPAYNVEMALVEILIY  207 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka-------------------------------~-~e~eeaynirmllvEilI~  207 (271)
                      --.+...+.+.|+.++|++++++..+.-                               . ........+--.|+.++..
T Consensus       357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k  436 (857)
T PLN03077        357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK  436 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            4444556777788888888887653210                               0 0111222233457788888


Q ss_pred             hcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhC--h-HHHHHHHHHHHhhcC
Q 024174          208 QGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLN--M-EEAKKWWEEFAETID  260 (271)
Q Consensus       208 qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~--k-~EA~k~we~f~~lv~  260 (271)
                      .|++++|.+ ++++.+.+       ...|-++|..+..  + +||.+.|++-++-+.
T Consensus       437 ~g~~~~A~~vf~~m~~~d-------~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~  486 (857)
T PLN03077        437 CKCIDKALEVFHNIPEKD-------VISWTSIIAGLRLNNRCFEALIFFRQMLLTLK  486 (857)
T ss_pred             cCCHHHHHHHHHhCCCCC-------eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence            899999998 65665433       2467778766554  4 888888888765444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.60  E-value=3.9  Score=25.51  Aligned_cols=31  Identities=26%  Similarity=0.183  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhc
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN  189 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~  189 (271)
                      .+..+|..+...|++++|.++++++++.+++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            4677888888999999999999999887765

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.23  E-value=3.8  Score=24.79  Aligned_cols=27  Identities=22%  Similarity=0.171  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174          198 EMALVEILIYQGKYREALE-CNCLKDEQ  224 (271)
Q Consensus       198 rmllvEilI~qGk~~EAL~-~~~L~~e~  224 (271)
                      -..+++++..+|+|++|.+ |++...-+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            4568999999999999999 66665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=80.68  E-value=20  Score=26.36  Aligned_cols=95  Identities=27%  Similarity=0.199  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      .....+..+...+..+.++..+..+...  ............++......+++++|.+ +....+..  +.+.....+.+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  136 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD--PDPDLAEALLA  136 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--CCcchHHHHHH
Confidence            4555555566666666666666655543  1222333334444455555566666666 44444333  33344455555


Q ss_pred             H-HHHhhCh-HHHHHHHHHHHh
Q 024174          238 I-IYTMLNM-EEAKKWWEEFAE  257 (271)
Q Consensus       238 I-IYtmL~k-~EA~k~we~f~~  257 (271)
                      . +|.-++. ++|...|++-..
T Consensus       137 ~~~~~~~~~~~~a~~~~~~~~~  158 (291)
T COG0457         137 LGALYELGDYEEALELYEKALE  158 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            5 5666666 666666666533

>PRK04841 transcriptional regulator MalT; Provisional

Probab=80.25  E-value=6.9  Score=40.32  Aligned_cols=102  Identities=19%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhh---hcccCCC---CCC
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQRI---PSD  229 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~~~---p~D  229 (271)
                      ....++..+...|+.++|...++.+.+.+++..  ...-..-..+++++..+|++++|.. +.+   +.++...   +..
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            345566667778888888888888887776532  2222344566778888888888887 333   2222100   111


Q ss_pred             CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...+...|.++.-.|. ++|..++++-..+..
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            1223345666666677 888777777655543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.14  E-value=4.7  Score=43.22  Aligned_cols=100  Identities=16%  Similarity=0.085  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHH------------------------------HHHHHHh
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMAL------------------------------VEILIYQ  208 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmll------------------------------vEilI~q  208 (271)
                      +.-.+|.-|..-|+.+||+..-++|+..|-+....-+|+.-.-                              +-|+--|
T Consensus       322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq  401 (966)
T KOG4626|consen  322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ  401 (966)
T ss_pred             HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence            4567788888889999999999999998877665555543322                              2334446


Q ss_pred             cchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          209 GKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       209 Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |++++|+. |++-....  |.=+-.+-=-|-.|+-+++ ++|-++.++=.+.-|
T Consensus       402 gnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP  453 (966)
T KOG4626|consen  402 GNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP  453 (966)
T ss_pred             ccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence            88888888 66555444  5555556666778888888 888888887666555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 52/389 (13%), Positives = 93/389 (23%), Gaps = 159/389 (40%)

Query: 16  RVKPVTKL-------------------GSGHSSI-------------------WISLSKG 37
           R++P  KL                   GSG + +                   W++L   
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL--K 190

Query: 38  STRRP---------FGRVFSPVICA-HDGSSTPSEN------------------------ 63
           +   P               P   +  D SS                             
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 64  ----DNKIVKGAVGAS---LVLTCALGIMSFSSRMNPKAIAAGP----------MEMYQK 106
               + K    A   S   L+ T    +  F S      I+               +  K
Sbjct: 251 LNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 107 APRMSV--LP------HP-----IG----------------GRYALNSFLDVSVR-LASS 136
                   LP      +P     I                     L + ++ S+  L  +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 137 KAEPFYWPRYTVPPGPSAEDVNAIKAEAVK----QMKYGKPEFAVT------LLKK---- 182
           +    +  R +V P       + I    +      +        V       L++K    
Sbjct: 370 EYRKMFD-RLSVFP----PSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 183 -------VYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFY 235
                  +Y + K + E  Y +  ++V+       Y    +     D      D  F  +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVD------HYN-IPKTFDSDDLIPPYLDQYFYSH 476

Query: 236 KAIIYTMLNMEEAKKWWEEFAETIDDEEF 264
             I + + N+E  ++    F     D  F
Sbjct: 477 --IGHHLKNIEHPER-MTLFRMVFLDFRF 502

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 153 SAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYR 212
             + ++ I + A      G+ E A    + +   C  +      + M L  I   + +++
Sbjct: 32  PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFL---CIYDFYNVDYI-MGLAAIYQIKEQFQ 87

Query: 213 EALEC--NCLKDEQRIPSDGRFPFYKAIIYTML-NMEEAKKWWEEFAETIDDEEF 264
           +A +             +D    F+       L    +AK+ +E   +  +DE+ 
Sbjct: 88  QAADLYAVAFALG---KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 153 SAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYR 212
           S + +  + A    Q + GK + A  + + +      +          L       G Y 
Sbjct: 14  SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLG----LGACRQSLGLYE 69

Query: 213 EALEC--NCLKDEQRIPSDGRFPFYKAIIYTML-NMEEAKKWWEEFAETIDDE 262
           +AL+        +    ++ RFPF+ A  +  L +++ A+  +   A  +   
Sbjct: 70  QALQSYSYGALMD---INEPRFPFHAAECHLQLGDLDGAESGFYS-ARALAAA 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.59
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.58
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.57
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.56
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.54
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.51
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.51
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.5
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.47
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.4
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.39
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.33
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.29
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.28
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.18
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.11
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.1
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.08
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.03
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.02
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.01
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.01
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.0
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.99
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.98
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.98
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.97
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.97
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.95
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.93
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.92
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.92
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.9
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.9
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.88
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.87
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.87
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.83
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.83
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.76
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.76
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.75
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.75
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.73
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.73
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.72
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.71
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.71
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.68
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.68
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.68
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.67
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.67
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.66
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.65
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.64
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.61
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.6
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.59
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.59
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.57
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.57
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.55
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.54
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.54
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.53
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.51
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.51
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.48
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.45
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.43
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.41
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.4
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.37
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.34
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.33
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.32
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.31
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.3
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.3
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.3
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.26
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.21
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.15
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.14
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.11
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.11
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.1
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.08
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.02
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.01
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.98
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.83
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.82
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.77
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.77
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.73
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.72
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.71
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.62
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.6
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.58
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.57
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.52
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.42
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.39
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.33
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.31
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.3
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.27
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.25
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.05
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.01
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.93
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.9
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.89
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	95.83
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.61
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.45
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.4
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.39
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.21
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.16
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.82
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	94.79
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	94.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	94.02
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	92.81
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.26
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	91.13
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.58
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	90.04
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	89.46
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	89.42
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	88.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	88.08
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	87.63
1pc2_A	152	Mitochondria fission protein; unknown function; NM	86.86
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	86.7
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	86.14
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	85.63
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	84.67
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	83.69
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	83.49
1pc2_A	152	Mitochondria fission protein; unknown function; NM	83.42
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	83.28
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	81.93
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	81.0
1klx_A	138	Cysteine rich protein B; structural genomics, heli	80.45

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.69  E-value=1e-07  Score=68.65  Aligned_cols=104  Identities=11%  Similarity=0.035  Sum_probs=89.2

Q ss_pred             CCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC
Q 024174          151 GPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD  229 (271)
Q Consensus       151 ~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D  229 (271)
                      .+....+.++...+..+...|+.++|++.++++++.   ++. ...+-..++.++..+|+|++|++ ++...+.+  |.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~   83 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTF   83 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTC
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCc
Confidence            334467889999999999999999999999999863   232 24567788999999999999999 66777666  899


Q ss_pred             CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...++..|.+|.-+++ ++|.++|++..++.|
T Consensus        84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            9999999999999999 999999999998876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.59  E-value=3.8e-07  Score=63.83  Aligned_cols=100  Identities=25%  Similarity=0.205  Sum_probs=85.8

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      +.+..+...+..+...|+.++|++.++++++..   |. ...+...++.++..+|+|++|+. ++...+.+  |.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~   75 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLD---PH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGY   75 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHH
Confidence            356678889999999999999999999998753   32 24567778999999999999999 77777666  8899999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...|.+|.-+++ ++|.++|++..++.|
T Consensus        76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           76 SRKAAALEFLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            999999999999 999999999998877

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.58  E-value=3.8e-07  Score=70.69  Aligned_cols=101  Identities=13%  Similarity=0.006  Sum_probs=89.4

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      .++...+...+..+...|++++|++.++++++...+    ...+-..++.++..+|+|++|+. |+...+.+  |.+...
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~   81 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKA   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHH
Confidence            367888999999999999999999999999975432    24567778999999999999999 77777777  899999


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ++..|.+|.-+++ ++|.++|++..++.|
T Consensus        82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           82 WSRLGLARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            9999999999999 999999999999988

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=5.2e-07  Score=66.27  Aligned_cols=102  Identities=12%  Similarity=0.076  Sum_probs=88.1

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      ..+...+...+..+...|++++|++.++++++.   ++..  ...+...++.++..+|+|++|+. |+...+.+  |.+.
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~   99 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDV   99 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCH
Confidence            356788899999999999999999999999853   3332  35677788999999999999999 77777666  8899


Q ss_pred             CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..++..|.+|..+++ ++|.++|++..++.|
T Consensus       100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  130 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEP  130 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            999999999999999 999999999999887

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.57  E-value=3e-07  Score=67.89  Aligned_cols=98  Identities=15%  Similarity=0.070  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +...+...+..+...|++++|++.++++++..   |.. ..+-..++.++..+|+|++|+. |+.....+  |.+...++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~   76 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYI   76 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence            45668889999999999999999999999754   322 3567778999999999999999 77777777  99999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                      ..|.+|..+++ ++|.++|++..++.
T Consensus        77 ~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           77 RKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            99999999999 99999999999988

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.56  E-value=3.6e-07  Score=69.83  Aligned_cols=101  Identities=17%  Similarity=0.098  Sum_probs=88.1

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      .++...+-..+..+...|++++|.+.++.+++.   +|.. ..+-..++.++..+|+|++|+. |+.....+  |.|...
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~   88 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRF   88 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHH
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHH
Confidence            367888999999999999999999999998863   4432 3455678899999999999999 77777777  999999


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ++..|.+|..+++ ++|.++|++..++.|
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           89 PFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999 999999999999887

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.54  E-value=5.8e-07  Score=70.55  Aligned_cols=101  Identities=18%  Similarity=0.085  Sum_probs=87.5

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      ++...+-..+..+...|++++|++.++.+++.   +|.. ..+-..++.++..+|+|++|+. |+....-+  |.|.+.+
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~   92 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFP   92 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---Cccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHH
Confidence            56778889999999999999999999998864   3332 3344678899999999999999 77777777  9999999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      +..|.+|.-+++ +||.++|++..++.|.
T Consensus        93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           93 FHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            999999999999 9999999999999883

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.51  E-value=7.5e-07  Score=68.32  Aligned_cols=100  Identities=15%  Similarity=0.096  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      +.....+.....+.+.|++++|++.+++|++.   +|.. ..+-..++.++..+|+|++|+. |+...+-+  |.+...+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~   84 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGY   84 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHH
Confidence            56677889999999999999999999999964   3322 3455678899999999999999 77766666  8999999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +..|.+|..+++ +||.++|++-.++-|
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            999999999999 999999999999887

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.51  E-value=9.7e-07  Score=62.58  Aligned_cols=100  Identities=21%  Similarity=0.159  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      .+...+...+..+...|+.++|++.++++++..   +. ...+...++.++..+|+|++|++ ++...+.+  |.+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~   83 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAY   83 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHH
Confidence            456678889999999999999999999998753   32 24567788999999999999999 66777666  8899999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +..|.+|..+++ ++|.++|++-.++.|
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence            999999999999 999999999998877

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.51  E-value=6.6e-07  Score=65.18  Aligned_cols=97  Identities=19%  Similarity=0.076  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCccc--chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---CCch
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAY--NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---GRFP  233 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeay--nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~R~~  233 (271)
                      +-..|..+...|++++|++.++.+++.   +|...+  ++...+++++..+|+|++|++ ++.+.+.+  |.+   ...+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~   79 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGL   79 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHH
Confidence            456788899999999999999988864   343333  677889999999999999999 77877776  777   5558


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      +..|.+|.-+++ ++|.++|++..+..|.
T Consensus        80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           80 LKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            899999999999 9999999999998883

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.50  E-value=6.4e-07  Score=72.32  Aligned_cols=102  Identities=16%  Similarity=0.088  Sum_probs=89.3

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      .++.+.+-.++..+...|++++|++.++.+++.   +|.. ..+-..++.++..+|+|++|+. |+....-+  |.|...
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~-~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~  106 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYN-VDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTP  106 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHH
Confidence            368888999999999999999999999999864   4432 3355678899999999999999 77777777  999999


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ++..|.+|..+++ +||.++|++-.++.|.
T Consensus       107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          107 VFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999 9999999999999883

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.49  E-value=4.2e-07  Score=70.33  Aligned_cols=104  Identities=12%  Similarity=0.094  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-----CCc---------ccchHHHHHHHHHHhcchHHHhh-hhh
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-----PEP---------AYNVEMALVEILIYQGKYREALE-CNC  219 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e-----~ee---------aynirmllvEilI~qGk~~EAL~-~~~  219 (271)
                      +....++..+..+.+.|++++|++..++|++.+...     +.+         ...+-.-++.+++.+|+|++|+. |+.
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            457789999999999999999999999999885431     211         12456678899999999999999 777


Q ss_pred             hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          220 LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       220 L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...-+  |.+...++..|.+|..+++ ++|.++|++..++-|
T Consensus        89 al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  128 (162)
T 3rkv_A           89 VLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP  128 (162)
T ss_dssp             HHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence            77667  9999999999999999999 999999999999887

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.47  E-value=5.7e-07  Score=66.16  Aligned_cols=101  Identities=10%  Similarity=0.009  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      .+...+...+..+...|++++|++.++.+++..   |. ...+...++.++..+|+|++|+. ++.....+  |.+.+.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~   80 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAH   80 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHH
Confidence            456778999999999999999999999999754   32 24577788999999999999999 77777666  8999999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      +..|.+|..+++ ++|.++|++..++.|.
T Consensus        81 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           81 FFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            999999999999 9999999999998884

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.40  E-value=1.8e-06  Score=68.82  Aligned_cols=103  Identities=15%  Similarity=0.103  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cc-----------cchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PA-----------YNVEMALVEILIYQGKYREALE-CNCLKD  222 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e-ea-----------ynirmllvEilI~qGk~~EAL~-~~~L~~  222 (271)
                      ....+...+..+...|++++|++.++++++...+++. ..           ..+-..++.++..+|+|++|+. |+...+
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4566889999999999999999999999987655541 11           2566778999999999999999 776666


Q ss_pred             cCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          223 EQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       223 e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+  |.+.+.++..|.+|..+++ ++|.++|++..++-|
T Consensus       117 ~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  153 (198)
T 2fbn_A          117 ID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  153 (198)
T ss_dssp             HS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             hC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            66  8999999999999999999 999999999999877

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.39  E-value=1.4e-06  Score=65.08  Aligned_cols=100  Identities=13%  Similarity=-0.010  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      +....+...+......|+.++|.+.++++++....    ...+-..++.++..+|+|++|+. ++...+.+  |.+...+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~   84 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGY   84 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHH
Confidence            44666888899999999999999999999875322    24566778889999999999999 66777666  8888899


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +..|.+|.-+++ ++|.++|++..++.|
T Consensus        85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p  112 (166)
T 1a17_A           85 YRRAASNMALGKFRAALRDYETVVKVKP  112 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            999999999999 999999999988877

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.33  E-value=2.7e-06  Score=59.11  Aligned_cols=96  Identities=18%  Similarity=0.060  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC--CCCchhH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS--DGRFPFY  235 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~--D~R~~L~  235 (271)
                      .....+..+...|+.++|.+.++++++..   +. ...+...++.++..+|+|++|++ +++..+.+  |.  +...+..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~   81 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD---PE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA   81 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence            35567888889999999999999998753   32 23456788999999999999999 66777666  78  8888999


Q ss_pred             HHHHHHhh-Ch-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTML-NM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL-~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|..+ ++ ++|.++|++..+..|
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            99999999 99 999999999998888

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.29  E-value=7.1e-06  Score=57.59  Aligned_cols=98  Identities=19%  Similarity=0.153  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ...+...+..+...|+.++|++.++++++..   +. ...+-..+++++..+|++++|++ ++...+.+  |.+...+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~   82 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYN   82 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHH
Confidence            4556778888899999999999999998753   22 23456778999999999999999 66776666  888888899


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|..+++ ++|.++|++..++.|
T Consensus        83 la~~~~~~~~~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQKALELDP  108 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            9999999999 999999999988877

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.28  E-value=2.7e-06  Score=60.49  Aligned_cols=99  Identities=12%  Similarity=0.063  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-----
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD-----  229 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D-----  229 (271)
                      ....+..++......|+.++|++.++++++..   +. ...+...++.++..+|+|++|+. ++...+..  |.+     
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD---PT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---Cc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHH
Confidence            44567788889999999999999999998754   22 23566788999999999999999 66555443  444     


Q ss_pred             --CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 --GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 --~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                        .+.++..|.+|..+++ ++|.++|++..++-|
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence              7778889999999999 999999999988766

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.22  E-value=6.2e-06  Score=65.28  Aligned_cols=99  Identities=14%  Similarity=0.046  Sum_probs=85.5

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      ++.......+..+...|+.++|++.++++++....    ...+-..++.+++.+|+|++|++ ++...+.+  |.+...+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~  210 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAY  210 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHH
Confidence            45666788899999999999999999999975422    23567788999999999999999 77777666  8999999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                      +..|.+|..+++ ++|.++|++..++.
T Consensus       211 ~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          211 IRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999 99999999999887

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.21  E-value=4.4e-06  Score=68.96  Aligned_cols=98  Identities=17%  Similarity=0.143  Sum_probs=83.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII  239 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II  239 (271)
                      ...|..+...|+.++|++.++++++...+++.....+-..+++++..+|+|++|+. ++...+.+  |.+...++..|.+
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~  315 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEA  315 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence            34588899999999999999999976544333333455678999999999999999 77777766  8999999999999


Q ss_pred             HHhhCh-HHHHHHHHHHHhhcC
Q 024174          240 YTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       240 YtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |..+++ ++|.++|++-.++-|
T Consensus       316 ~~~~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          316 YLIEEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHcCCHHHHHHHHHHHHhcCC
Confidence            999999 999999999999887

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.18  E-value=5.5e-06  Score=62.84  Aligned_cols=96  Identities=17%  Similarity=-0.000  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      ..-..+..+...|+.++|++.++.+++.   +|.. ...-..++.++..+|++++|+. ++.....+  |.+...++..|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la   92 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA   92 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            4667888999999999999999999863   4432 3456778999999999999999 77777777  99999999999


Q ss_pred             HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          238 IIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+|..+++ +||.++|++..++-|
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           93 VSHTNEHNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCc
Confidence            99999999 999999999988877

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.17  E-value=4.1e-06  Score=68.27  Aligned_cols=99  Identities=13%  Similarity=0.095  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHH----------------HHHHHHHhcchHHHhh-hh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMA----------------LVEILIYQGKYREALE-CN  218 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirml----------------lvEilI~qGk~~EAL~-~~  218 (271)
                      .++.+...+..+...|++++|++.++++++.--++++    +...                ++.++..+|+|++|+. |+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE----MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH----HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4667888899999999999999999999864322211    2223                8899999999999999 77


Q ss_pred             hhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          219 CLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       219 ~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...+.+  |.|...++-.|.+|..+++ ++|.++|++-.++-|
T Consensus        79 ~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P  119 (208)
T 3urz_A           79 ELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA  119 (208)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            877777  9999999999999999999 999999999999887

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.14  E-value=9.9e-06  Score=60.48  Aligned_cols=98  Identities=24%  Similarity=0.283  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .......+..+...|+.++|.+.++++++....    ...+...+++++..+|++++|+. +++..+.+  |.+...+..
T Consensus        76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~  149 (186)
T 3as5_A           76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRA  149 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHH
Confidence            345667777888889999999999888865322    23566778888888999999998 66666666  788888888


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|..+++ ++|.++|++..++.|
T Consensus       150 la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          150 IAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            8999999998 999999999888877

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.12  E-value=7.3e-06  Score=64.75  Aligned_cols=97  Identities=15%  Similarity=0.222  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      ......+..+...|+.++|.+.++++++....    ...+...++.++..+|++++|+. ++...+.+  |.+...++..
T Consensus       126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l  199 (243)
T 2q7f_A          126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNEN----DTEARFQFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNA  199 (243)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence            45667788888889999999999988865432    23466788888999999999998 66666666  7888888889


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+|.-+++ ++|.+++++..++.|
T Consensus       200 a~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          200 GVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHccCHHHHHHHHHHHHccCc
Confidence            999999999 999999999988877

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.11  E-value=2.1e-05  Score=58.72  Aligned_cols=99  Identities=18%  Similarity=0.179  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +.......+..+...|+.++|.+.++++++..   +. ...+...++.++..+|++++|++ ++...+.+  |.+.+.++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~  114 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLADA---PD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRF  114 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHH
Confidence            34567788888999999999999999998753   22 23566788999999999999999 66776666  88889999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|..+++ ++|.+++++..+..|
T Consensus       115 ~~a~~~~~~~~~~~A~~~~~~~~~~~~  141 (186)
T 3as5_A          115 RLGVALDNLGRFDEAIDSFKIALGLRP  141 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence            99999999999 999999999988876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.10  E-value=9.2e-06  Score=73.89  Aligned_cols=102  Identities=15%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC------------CCcccchHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE------------PEPAYNVEMALVEILIYQGKYREALE-CNCLKDE  223 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e------------~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e  223 (271)
                      ...+...+..+.+.|++++|++.+++|++.+.+.            ......+-..++.++..+|+|++|+. |+...+.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            4558889999999999999999999999855431            11223455678899999999999999 7777766


Q ss_pred             CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +  |.+...++..|.+|..+++ +||.++|++..++.|
T Consensus       303 ~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          303 D--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             C--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            6  8999999999999999999 999999999999987

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.10  E-value=1e-05  Score=62.72  Aligned_cols=97  Identities=14%  Similarity=0.065  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      ......+......++.+.|.+.++++.+..   |. ..++...++.++..+|+|++|++ |+...+.+  |.+...+...
T Consensus        74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l  147 (184)
T 3vtx_A           74 EAYYILGSANFMIDEKQAAIDALQRAIALN---TV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSI  147 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHH
Confidence            345666777888889999998888887543   22 23566778999999999999999 77777777  8999999999


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+|.-+++ +||.++|++-.++-|
T Consensus       148 g~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          148 GLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhCCc
Confidence            999999999 999999998877655

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.08  E-value=2.4e-05  Score=55.01  Aligned_cols=98  Identities=19%  Similarity=0.147  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .......+..+...|+.++|.+.++++++..   +. ...+...+++++..+|++++|++ +++..+..  |.+...++.
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~  108 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYN  108 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHH
Confidence            3456667888888999999999999988653   22 23456678999999999999999 66766666  788888888


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|.-+++ ++|.+++++..++-|
T Consensus       109 la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A          109 LGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHccHHHHHHHHHHHHccCC
Confidence            8999999999 999999999888766

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.08  E-value=1.4e-05  Score=64.29  Aligned_cols=99  Identities=12%  Similarity=0.002  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      +.+...+..+...|++++|++.++++++...   .....+-..++.++..+|+|++|++ ++...+.+  |.+...++..
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l   82 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN---NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK   82 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccC---CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence            5788889999999999999999999997653   1112344558999999999999999 77777777  8999999999


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      |.+|.-+++ ++|.+++++-.++.|.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~  108 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPG  108 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            999999999 9999999999998883

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.04  E-value=3.6e-05  Score=61.69  Aligned_cols=99  Identities=10%  Similarity=0.130  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +......++..+...|+.++|++.++++++..   +. ...+...++.++..+|++++|+. +++..+.+  |.+...+.
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~  213 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RN-QPSVALEMADLLYKEREYVPARQYYDLFAQGG--GQNARSLL  213 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHH
Confidence            45556677777888888888888888887643   21 24556778888888888888888 66666555  77777788


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..+.+|.-++. ++|.+++++..++.|
T Consensus       214 ~~~~~~~~~g~~~~A~~~~~~~~~~~p  240 (252)
T 2ho1_A          214 LGIRLAKVFEDRDTAASYGLQLKRLYP  240 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence            88888888888 888888888888877

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.03  E-value=2.9e-05  Score=63.68  Aligned_cols=102  Identities=15%  Similarity=0.034  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-----CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-----EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~-----eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      ...+...+..+...|+.++|.+.++++++......     .....+-..++.++..+|++++|+. ++...+.+  |.+.
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~  270 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNA  270 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCS
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccch
Confidence            45567777788888888888888888887765432     2223466677888888888888888 66666555  7788


Q ss_pred             CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..++..|.+|.-+++ ++|.++|++-.++.|
T Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (330)
T 3hym_B          271 STYSAIGYIHSLMGNFENAVDYFHTALGLRR  301 (330)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence            888888888888888 888888888777766

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.02  E-value=3.9e-05  Score=53.89  Aligned_cols=95  Identities=19%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      .-.++..+...|+.++|.+.++.+++..   +.. ......++.++..+|++++|++ ++...+.+  |.+...++..|.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~   77 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD---PRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC---Ccc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHH
Confidence            4456777888899999999999998643   222 2345567899999999999999 66776666  788888888999


Q ss_pred             HHHhhCh-HHHHHHHHHHHhhcC
Q 024174          239 IYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +|...++ ++|.+++++..+..|
T Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           78 AYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCC
Confidence            9999999 999999999888766

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.01  E-value=3.4e-05  Score=59.76  Aligned_cols=99  Identities=6%  Similarity=-0.058  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHH-HHHhcch--HHHhh-hhhhcccCCCCCCCCc
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEI-LIYQGKY--REALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEi-lI~qGk~--~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      ......++..+...|+.++|++.++++++...++    ..+...++.+ +..+|++  ++|+. ++.....+  |.+...
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~--p~~~~~  117 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALD--SNEITA  117 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--TTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--CCcHHH
Confidence            4567888889999999999999999999765322    4466778888 6678999  99999 77777777  899999


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ++..|.+|..+++ ++|.++|++..++.|.
T Consensus       118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          118 LMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            9999999999999 9999999999999884

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.01  E-value=5.3e-05  Score=60.92  Aligned_cols=101  Identities=15%  Similarity=0.075  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      .+...+..++..+...|+.++|.+.++++++..   |. ...+...++.++..+|+|++|++ ++...+.+  |.+...+
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~  114 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAH  114 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--ccccHHH
Confidence            567778899999999999999999999999753   32 23466788999999999999999 77777766  8899999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      +..|.+|.-+++ ++|.++|++-.++.|.
T Consensus       115 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A          115 LNRGIALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            999999999999 9999999999988773

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.00  E-value=2.5e-05  Score=67.16  Aligned_cols=99  Identities=10%  Similarity=0.011  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +...+...+..+...|++++|++.+++|++.   +|. ...+-..++.++..+|+|++|++ |+...+.+  |.+...++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~   76 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHF   76 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence            3457889999999999999999999999975   332 24566788999999999999999 77777666  89999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|..+++ +||.+++++..++.|
T Consensus        77 ~lg~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           77 FLGQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            99999999999 999999999999887

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.00  E-value=3.5e-05  Score=60.81  Aligned_cols=98  Identities=13%  Similarity=0.027  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .......+..+...|+.++|.+.++++++....+    .++...++.++..+|++++|+. ++...+..  |.+...+..
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~  164 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQ  164 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHH
Confidence            4556777888889999999999999988754322    3467788999999999999999 66766666  788888899


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|.-+++ ++|.++|++..+..|
T Consensus       165 l~~~~~~~~~~~~A~~~~~~~~~~~~  190 (243)
T 2q7f_A          165 FGMCLANEGMLDEALSQFAAVTEQDP  190 (243)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            9999999999 999999999888766

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.99  E-value=2.5e-05  Score=64.38  Aligned_cols=99  Identities=13%  Similarity=0.103  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +++.+...+..+...|++++|++.++++++..   |. ...+...++.++..+|+|++|+. ++...+.+  |.+...+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~   75 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARL   75 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHH
Confidence            56778899999999999999999999999743   32 23577889999999999999999 77777666  88889999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|..+++ ++|.+++++..++.|
T Consensus        76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           76 QRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            99999999999 999999999887765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.98  E-value=3.6e-05  Score=68.14  Aligned_cols=104  Identities=16%  Similarity=0.127  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--Ccc---------cchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPA---------YNVEMALVEILIYQGKYREALE-CNCLKD  222 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eea---------ynirmllvEilI~qGk~~EAL~-~~~L~~  222 (271)
                      ++...+...+..+.+.|++++|++.+++|++....+.  .+.         -.+-..++.++..+|+|++|+. |+....
T Consensus       145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566789999999999999999999999998764432  111         3566778999999999999999 777776


Q ss_pred             cCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          223 EQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       223 e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+  |.+...++..|.+|..+++ ++|.++|++-.++-|
T Consensus       225 ~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  261 (336)
T 1p5q_A          225 LD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  261 (336)
T ss_dssp             HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             hC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            66  8999999999999999999 999999999999887

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.98  E-value=2.4e-05  Score=61.52  Aligned_cols=98  Identities=12%  Similarity=0.038  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +.-..-..+..+...|++++|.+.+++++     ++  ...+...++.++..+|+|++|++ |+.....+  |.+...++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~   75 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ-----DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYF   75 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS-----SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc-----CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence            34456678888999999999999998875     22  34577889999999999999999 77766666  88889999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETIDDE  262 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~~  262 (271)
                      ..|.+|..+++ ++|.++|++-.++.|..
T Consensus        76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           76 QRGMLYYQTEKYDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence            99999999999 99999999999988854

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.97  E-value=3.3e-05  Score=67.65  Aligned_cols=100  Identities=13%  Similarity=0.032  Sum_probs=88.1

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      .++.+.+...+..+...|++++|++.++++++..   |.  ..+...++++++.+|+|++|+. ++...+.+  |.+...
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~   75 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELK---ED--PVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKV   75 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cc--HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHH
Confidence            3567889999999999999999999999999754   42  4567778999999999999999 77777777  999999


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ++..|.+|..+++ ++|.+.|++-.++-|
T Consensus        76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  104 (514)
T 2gw1_A           76 LLRRASANEGLGKFADAMFDLSVLSLNGD  104 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            9999999999999 999999999887776

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.97  E-value=4.9e-05  Score=62.64  Aligned_cols=104  Identities=15%  Similarity=0.145  Sum_probs=85.2

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---C
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---G  230 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~  230 (271)
                      .+...+-..|..+...|++++|++.++++++....+ ....++...++.++..+|+|++|+. ++.+.+..  |.+   .
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~   89 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDPRVP   89 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCchhH
Confidence            356778999999999999999999999988633111 1235677889999999999999999 77877765  655   3


Q ss_pred             CchhHHHHHHHh--------hCh-HHHHHHHHHHHhhcCC
Q 024174          231 RFPFYKAIIYTM--------LNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       231 R~~L~k~IIYtm--------L~k-~EA~k~we~f~~lv~~  261 (271)
                      ..++..|.+|..        +++ ++|.++|+++.+..|.
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  129 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN  129 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence            457788999998        889 9999999999999984

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.97  E-value=3e-06  Score=62.63  Aligned_cols=88  Identities=15%  Similarity=0.123  Sum_probs=68.6

Q ss_pred             cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HH
Q 024174          170 YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EE  247 (271)
Q Consensus       170 Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~E  247 (271)
                      .|+.++|++.++++++....+| ....+...++.++..+|+|++|++ +++..+.+  |.+...++..|.+|.-+++ +|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence            4778899999998886321122 334667788899999999999999 77777777  8999999999999999999 99


Q ss_pred             HHHHHHHHHhhcC
Q 024174          248 AKKWWEEFAETID  260 (271)
Q Consensus       248 A~k~we~f~~lv~  260 (271)
                      |.++|++..+..|
T Consensus        80 A~~~~~~al~~~p   92 (117)
T 3k9i_A           80 GVELLLKIIAETS   92 (117)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999888877

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.95  E-value=4.3e-05  Score=59.17  Aligned_cols=99  Identities=10%  Similarity=0.021  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          158 NAIKAEAVKQMKY-GKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       158 ~~lk~~A~~L~kS-gk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ......+..+... |+.++|++.++++++  .........+...++.++..+|++++|+. ++...+.+  |.+...+..
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~  152 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKE  152 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHH
Confidence            3456677777788 888888888888776  11222234556677788888888888888 55655555  677777777


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|..+++ ++|.++|++..++.|
T Consensus       153 la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          153 LARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7888888888 888888888777665

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.94  E-value=3.9e-05  Score=61.49  Aligned_cols=100  Identities=12%  Similarity=-0.048  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ......++..+...|+.++|.+.++++++  .........+...++.++..+|++++|++ ++...+.+  |.+...++.
T Consensus       105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~  180 (252)
T 2ho1_A          105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALE  180 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHH
Confidence            34566777888888999999999888876  11223344566778888888999999998 66666666  788888888


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|..+++ ++|.++|++..+..|
T Consensus       181 la~~~~~~g~~~~A~~~~~~~~~~~~  206 (252)
T 2ho1_A          181 MADLLYKEREYVPARQYYDLFAQGGG  206 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            8999999999 999999998887666

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.94  E-value=4.7e-05  Score=60.19  Aligned_cols=102  Identities=12%  Similarity=0.021  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc----------------------CCCcccchHHHHHHHHHHhcchHHH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN----------------------EPEPAYNVEMALVEILIYQGKYREA  214 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~----------------------e~eeaynirmllvEilI~qGk~~EA  214 (271)
                      ......++..+...|+.++|++.++++++....                      .......+...++.++..+|+|++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            566888899999999999999999999873211                      2223345677889999999999999


Q ss_pred             hh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          215 LE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       215 L~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ++ ++...+.+  |.+...++..|.+|.-+++ ++|.++|++..++.|
T Consensus       159 ~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          159 VKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            99 77777766  8899999999999999999 999999999988876

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.93  E-value=3.1e-05  Score=65.93  Aligned_cols=99  Identities=17%  Similarity=0.050  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +......++..+...|+.++|++.++++++....+    ..+-..++.++..+|+|++|+. |++..+.+  |.+...+.
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~  285 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRY  285 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHH
Confidence            44567778888899999999999999998754222    3466788999999999999999 77777666  89999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|.-+++ ++|.++|++-.++.|
T Consensus       286 ~l~~~~~~~g~~~~A~~~~~~al~~~~  312 (365)
T 4eqf_A          286 NLGISCINLGAYREAVSNFLTALSLQR  312 (365)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            99999999999 999999999999888

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.93  E-value=6.6e-05  Score=59.04  Aligned_cols=98  Identities=7%  Similarity=-0.082  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC-----
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG-----  230 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~-----  230 (271)
                      .......+..+...|++++|++.++++++..   +. .......++.++..+|+|++|+. ++...+..  |.+.     
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~  110 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRD---KH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL--RGNQLIDYK  110 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCSEEECG
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-chHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCccHHHHH
Confidence            3467888899999999999999999999753   22 23456778999999999999999 66665544  5555     


Q ss_pred             -----------CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          231 -----------RFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       231 -----------R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                                 ..++..|.+|.-+++ ++|.++|++..++.|
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A          111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence                       889999999999999 999999999999887

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.92  E-value=1.6e-05  Score=65.07  Aligned_cols=92  Identities=18%  Similarity=0.105  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +....-.++..+...|+.++|++.+++|++..     +...+...++.++..+|+++||.. |+...+.+  |.|...++
T Consensus       117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~  189 (217)
T 2pl2_A          117 YAPLHLQRGLVYALLGERDKAEASLKQALALE-----DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRV  189 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence            34567788889999999999999999999754     345567789999999999999999 77877777  99999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHH
Q 024174          235 YKAIIYTMLNM-EEAKKWWEE  254 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~  254 (271)
                      ..|.+|..+++ +||.++|++
T Consensus       190 ~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          190 RYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHTC-------------
T ss_pred             HHHHHHHHccCHHHHHHHHHH
Confidence            99999999999 999888764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.92  E-value=8.5e-05  Score=60.78  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC---c
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR---F  232 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R---~  232 (271)
                      .+-..|..+...|++++|++.++++++.   .|..  ..+..+.+++++..+|+|++|+. ++.+.+..  |.+..   .
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a   80 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV   80 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence            4667788899999999999999999863   3432  34678889999999999999999 88888877  88876   5


Q ss_pred             hhHHHHHHHh------------------hCh-HHHHHHHHHHHhhcCC
Q 024174          233 PFYKAIIYTM------------------LNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       233 ~L~k~IIYtm------------------L~k-~EA~k~we~f~~lv~~  261 (271)
                      +++.|.+|.-                  +++ ++|.+.|+++.+..|.
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~  128 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN  128 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence            7889999875                  356 9999999999999984

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.91  E-value=5.3e-05  Score=68.54  Aligned_cols=102  Identities=13%  Similarity=-0.006  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC---CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE---PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e---~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      ....-.++..+...|+.++|.+.++++++...+.   |...-.+-..++.++..+|++++|++ ++++.+.+  |.|...
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~  552 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANV  552 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHH
Confidence            3456677888888999999999999999877652   33224577788999999999999999 77777766  889999


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +..-|.+|.-+++ +||.++|++..++-|
T Consensus       553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          553 HTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            9999999999999 999999999999888

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.90  E-value=2.9e-05  Score=60.57  Aligned_cols=95  Identities=12%  Similarity=0.029  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      .-.+|......|++++|.+.++++++.-   |. ..++-..++.++..+|++++|+. |+...+.+  |.|...++.-|.
T Consensus        34 ~~~la~~y~~~~~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~  107 (150)
T 4ga2_A           34 GFYFAKLYYEAKEYDLAKKYICTYINVQ---ER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN--PTQKDLVLKIAE  107 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            3467888899999999999999999753   32 23566778999999999999999 77777777  999999999999


Q ss_pred             HHHhhCh-HHHHHHH-HHHHhhcC
Q 024174          239 IYTMLNM-EEAKKWW-EEFAETID  260 (271)
Q Consensus       239 IYtmL~k-~EA~k~w-e~f~~lv~  260 (271)
                      +|.-+++ +||.+.| ++-.++-|
T Consensus       108 ~~~~~~~~~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A          108 LLCKNDVTDGRAKYWVERAAKLFP  131 (150)
T ss_dssp             HHHHHCSSSSHHHHHHHHHHHHST
T ss_pred             HHHHcCChHHHHHHHHHHHHHhCc
Confidence            9999999 7777665 88888887

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.90  E-value=3.2e-05  Score=62.92  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC----CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC-----
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE----PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ-----  224 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e----~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~-----  224 (271)
                      .....+..++..+...|+.++|++.++++++.+++.    ......+...++.++..+|++++|++ +++..+..     
T Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  230 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF  230 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            456678888999999999999999999999987764    33444567788999999999999999 55433210     


Q ss_pred             ------------------------------------------CCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          225 ------------------------------------------RIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       225 ------------------------------------------~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                                                                ..|.+...+...|.+|..+++ ++|.++|++-.++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                                                      014456667888999999999 999999999988876

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.89  E-value=3.3e-05  Score=67.09  Aligned_cols=98  Identities=17%  Similarity=0.140  Sum_probs=81.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII  239 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II  239 (271)
                      ...+..+...|+.++|++.++++++....++.....+-..++.++..+|++++|+. |+...+.+  |.+...++..|.+
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~  338 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEA  338 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence            34488889999999999999999975433222224567788999999999999999 77776666  8899999999999


Q ss_pred             HHhhCh-HHHHHHHHHHHhhcC
Q 024174          240 YTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       240 YtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |..+++ ++|.+++++..++-|
T Consensus       339 ~~~~~~~~~A~~~~~~al~~~p  360 (450)
T 2y4t_A          339 YLIEEMYDEAIQDYETAQEHNE  360 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHhcCHHHHHHHHHHHHHhCc
Confidence            999999 999999999999887

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.88  E-value=7.9e-05  Score=57.66  Aligned_cols=98  Identities=10%  Similarity=-0.013  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh-cchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ-GKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~q-Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      .....+..+...|+.++|.+.++++++..   +. ...+...++.++..+ |++++|+. ++...+....|.+...+...
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l  119 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIK---PD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK  119 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence            34444555555555555555555555432   11 123444555666666 66666666 44444311114445555556


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+|.-+++ ++|.++|++..+..|
T Consensus       120 ~~~~~~~~~~~~A~~~~~~~~~~~~  144 (225)
T 2vq2_A          120 GICSAKQGQFGLAEAYLKRSLAAQP  144 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            666666666 666666666555544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.87  E-value=5.3e-05  Score=64.75  Aligned_cols=102  Identities=11%  Similarity=-0.042  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC-
Q 024174          157 VNAIKAEAVKQMKY-GKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR-  231 (271)
Q Consensus       157 v~~lk~~A~~L~kS-gk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R-  231 (271)
                      ...+..++..+... |++++|++.+++|++...++..  ....+-.-++++++.+|+|++|+. |++..+..  |.+.. 
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~  194 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS--MGNRLS  194 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--SSCTTT
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--hcCCcc
Confidence            44577888888887 9999999999999998876543  234556778999999999999999 66666554  44433 


Q ss_pred             ------chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          232 ------FPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       232 ------~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                            .++..|++|.-+++ ++|.++|+++.++.|
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  230 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                  35678999999999 999999999998877

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.87  E-value=6.1e-06  Score=64.44  Aligned_cols=87  Identities=10%  Similarity=0.080  Sum_probs=71.8

Q ss_pred             HhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-
Q 024174          168 MKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-  245 (271)
Q Consensus       168 ~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-  245 (271)
                      ...|+.++|++.++++.+.    ..+.......|+.++..+|+|++|.+ ++...+.+  |.|...+...|.+|..+++ 
T Consensus         8 ~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence            3456778888877777642    22333455788999999999999999 77777777  9999999999999999999 


Q ss_pred             HHHHHHHHHHHhhcC
Q 024174          246 EEAKKWWEEFAETID  260 (271)
Q Consensus       246 ~EA~k~we~f~~lv~  260 (271)
                      ++|.++|++-.++-|
T Consensus        82 ~~A~~~~~~al~~~p   96 (150)
T 4ga2_A           82 DKAVECYRRSVELNP   96 (150)
T ss_dssp             HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999999887

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.84  E-value=0.00013  Score=58.96  Aligned_cols=94  Identities=11%  Similarity=-0.085  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc----hh
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF----PF  234 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~----~L  234 (271)
                      +-..|..+...|+.++|++.++++++..   |.. ..+-..++.++..+|+|++|+. ++...+ .  |.|...    ++
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~--~~~~~~~~~~~~   78 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK---YNS-PYIYNRRAVCYYELAKYDLAQKDIETYFS-K--VNATKAKSADFE   78 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCC-STTHHHHHHHHHHTTCHHHHHHHHHHHHT-T--SCTTTCCHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-c--cCchhHHHHHHH
Confidence            4556666666777777777777666432   211 1244455566666777777776 444444 2  333333    56


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|.-+++ ++|.++|++-.++-|
T Consensus        79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~  105 (272)
T 3u4t_A           79 YYGKILMKKGQDSLAIQQYQAAVDRDT  105 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence            66777777777 777777766666555

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.83  E-value=6.7e-05  Score=61.46  Aligned_cols=100  Identities=19%  Similarity=0.089  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +......++..+...|+.++|.+.++++++..   +. ...+-..++.++..+|++++|++ ++.....+  |.+...+.
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~  244 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR---PD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMY  244 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHH
Confidence            34567778888999999999999999998753   22 23566788999999999999999 77766666  88888999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ..|.+|..+++ ++|.+++++..++.|.
T Consensus       245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          245 NMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            99999999999 9999999999998883

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.83  E-value=6e-05  Score=63.45  Aligned_cols=99  Identities=19%  Similarity=0.071  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +......++..+...|+.++|++.++++++..   |.. ..+-..++.++..+|++++|+. ++...+.+  |.+...+.
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  289 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PND-YLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRY  289 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence            45567788888999999999999999998753   222 3466788999999999999999 77766666  88899999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|.-+++ ++|.++|++..++.|
T Consensus       290 ~l~~~~~~~g~~~~A~~~~~~al~~~~  316 (368)
T 1fch_A          290 NLGISCINLGAHREAVEHFLEALNMQR  316 (368)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            99999999999 999999999999888

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.83  E-value=0.00011  Score=60.50  Aligned_cols=102  Identities=17%  Similarity=0.129  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH--------hcchHHHhh-hhhhcccCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY--------QGKYREALE-CNCLKDEQRIP  227 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~--------qGk~~EAL~-~~~L~~e~~~p  227 (271)
                      ...+-.++..+...|++++|++.++.+++..-+++ ...+....++.++..        +|++++|++ ++.+.+..  |
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p  128 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--P  128 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--T
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--c
Confidence            55688899999999999999999999997543332 334566778888888        999999999 77888777  8


Q ss_pred             CCCCch-----------------hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          228 SDGRFP-----------------FYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       228 ~D~R~~-----------------L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      .+....                 +..|.+|.-+++ ++|.++|++..+..|.
T Consensus       129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            887777                 778999999999 9999999999999884

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.82  E-value=0.00011  Score=56.91  Aligned_cols=99  Identities=13%  Similarity=0.072  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +...+..++..+...|+.++|++.++.+.+..   + ....+...++.++..++++++|.. +....+.+  |.|...+.
T Consensus        38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~  111 (184)
T 3vtx_A           38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---T-TSAEAYYILGSANFMIDEKQAAIDALQRAIALN--TVYADAYY  111 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---c-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence            45678888999999999999999999887543   2 234566678888999999999999 66776666  89999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|.-+++ +||.++|++..++-|
T Consensus       112 ~lg~~~~~~g~~~~A~~~~~~~l~~~p  138 (184)
T 3vtx_A          112 KLGLVYDSMGEHDKAIEAYEKTISIKP  138 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence            99999999999 999999999998877

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.80  E-value=7.2e-05  Score=61.23  Aligned_cols=98  Identities=19%  Similarity=0.182  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh-----------cchHHHhh-hhhhccc
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ-----------GKYREALE-CNCLKDE  223 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~q-----------Gk~~EAL~-~~~L~~e  223 (271)
                      +......++..+...|+.++|++.++++++.   +|.. ......++.++..+           |++++|+. ++...+.
T Consensus        38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~-~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  113 (217)
T 2pl2_A           38 DPEALYWLARTQLKLGLVNPALENGKTLVAR---TPRY-LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV  113 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc-HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence            4567888889999999999999999988864   3322 23556677788888           99999998 7777766


Q ss_pred             CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                      +  |.+...++..|.+|..+++ +||.++|++-.++-
T Consensus       114 ~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          114 N--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             C--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            6  8888888888888888888 88888888765543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.76  E-value=0.00015  Score=59.37  Aligned_cols=96  Identities=14%  Similarity=0.021  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          159 AIKAEAVKQMKYG-KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       159 ~lk~~A~~L~kSg-k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      ....++..+...| +.++|.+.++++++..   +. ...+...++.++..+|+|++|++ ++...+..  |.+...+++.
T Consensus        92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l  165 (330)
T 3hym_B           92 SWFAVGCYYLMVGHKNEHARRYLSKATTLE---KT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYI  165 (330)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHTTC---TT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHH
Confidence            4555666666777 7777777777766432   21 22345566677777777777777 55555444  5666666677


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+|..+++ ++|.+++++-.++.|
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~~~  190 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSIAP  190 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            777777777 777777766666555

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.76  E-value=6.9e-05  Score=60.56  Aligned_cols=96  Identities=13%  Similarity=0.039  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      +..++..+...|++++|++.++++++.. .++.-....-..++.++..+|+|++|++ ++...+.+  |.+...+...|.
T Consensus        40 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~  116 (272)
T 3u4t_A           40 YNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGS  116 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence            5555666666677777777776666511 2222222334566666666677777666 55555544  566666666666


Q ss_pred             HHHhhCh-HHHHHHHHHHHhh
Q 024174          239 IYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~l  258 (271)
                      +|..+++ ++|.++|++-.++
T Consensus       117 ~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A          117 YFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             HHHHTTCHHHHHHHHGGGCCS
T ss_pred             HHHHccCHHHHHHHHHHHhhc
Confidence            6666666 6666666655544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.75  E-value=9.5e-06  Score=57.25  Aligned_cols=92  Identities=13%  Similarity=0.091  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-----
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD-----  229 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D-----  229 (271)
                      +...+...+..+...|++++|++.++++++..   |.. ..+-..++.++..+|+|++|+. |+.....+  |.+     
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHH
Confidence            45678889999999999999999999999753   322 3556788999999999999999 77777666  777     


Q ss_pred             -CCchhHHHHHHHhhCh-HHHHHHHH
Q 024174          230 -GRFPFYKAIIYTMLNM-EEAKKWWE  253 (271)
Q Consensus       230 -~R~~L~k~IIYtmL~k-~EA~k~we  253 (271)
                       ...++..|.+|.-++. ++|.+.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence             5666777777777776 66654443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.75  E-value=0.00012  Score=58.62  Aligned_cols=97  Identities=8%  Similarity=-0.018  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC------
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG------  230 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~------  230 (271)
                      ......+..+...|++++|++.++++++.   +|. ...+-..++.++..+|+|++|++ ++...+.+  |.|.      
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~  116 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKK---NYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLY  116 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHh---Ccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHH
Confidence            35566889999999999999999999852   333 44567789999999999999999 77777666  7877      


Q ss_pred             -CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          231 -RFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       231 -R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                       ..+...|.+|.-+++ ++|.+++++-.++-|
T Consensus       117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  148 (228)
T 4i17_A          117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTS  148 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence             669999999999999 999999999887765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.73  E-value=5.6e-05  Score=60.19  Aligned_cols=106  Identities=18%  Similarity=0.046  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--C--CcccchHHHHHHHHHHhcchHHHhh-hhhhccc------
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--P--EPAYNVEMALVEILIYQGKYREALE-CNCLKDE------  223 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e--~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e------  223 (271)
                      .....+..++..+...|+.++|++.++++++.+++.  +  .....+...++.++..+|+|++|+. +++..+.      
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  162 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG  162 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            456678899999999999999999999999987653  2  3445667788999999999999999 5544332      


Q ss_pred             CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-.|.+...+...|.+|.-+++ ++|.+++++-.++.+
T Consensus       163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            0015567788889999999999 999999999988754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.73  E-value=7.4e-05  Score=54.13  Aligned_cols=106  Identities=15%  Similarity=0.077  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhh---hcccCC-CC
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQR-IP  227 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~~-~p  227 (271)
                      .....+..++..+...|+.++|++.++++++.+.+..  ...-.+...++.++..+|+|++|+. ++.   +..+.. .+
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            3455677888888899999999999999998887643  3333567778999999999999998 553   222210 01


Q ss_pred             CCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          228 SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       228 ~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-.+.+...|.+|..+++ ++|.+++++-.++.+
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            115567788899999999 999999988776654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.72  E-value=5.4e-05  Score=60.26  Aligned_cols=104  Identities=16%  Similarity=0.112  Sum_probs=83.4

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC----CCcccchHHHHHHHHHHhcchHHHhh-hhhhccc------
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE----PEPAYNVEMALVEILIYQGKYREALE-CNCLKDE------  223 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e----~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e------  223 (271)
                      .....+..++..+...|++++|++.++++++.+++.    ....-.+-..++.++..+|+|++|+. +++..+.      
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            467778899999999999999999999999987643    23444566778999999999999999 5543322      


Q ss_pred             CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174          224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~l  258 (271)
                      ...|.....+...|.+|..+++ ++|.+++++-.++
T Consensus       121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            0014557778889999999999 9999999998877

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.71  E-value=0.00015  Score=62.92  Aligned_cols=100  Identities=13%  Similarity=0.126  Sum_probs=86.2

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      .++..+...+..+...|+.++|++.++++++.   +|. ...+-..++.++..+|+|++|+. ++...+.+  |.+...+
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~   97 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAAR   97 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHH
Confidence            57778899999999999999999999999864   332 24566678889999999999999 77777776  8899999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...|.+|..+++ ++|.++|++-.++.|
T Consensus        98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~  125 (450)
T 2y4t_A           98 LQRGHLLLKQGKLDEAEDDFKKVLKSNP  125 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            999999999999 999999999888766

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.71  E-value=0.00014  Score=59.60  Aligned_cols=100  Identities=15%  Similarity=-0.022  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +...+-..|..+...|+.++|++.++++++..   |. ...+...++.++..+|+|++|++ ++...+.+  |.+...+.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~   93 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHA   93 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHH
Confidence            33446778889999999999999999998643   32 23455678999999999999999 66777666  88999999


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ..|.+|..+++ ++|.+++++..++.|.
T Consensus        94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~  121 (327)
T 3cv0_A           94 ALAVSHTNEHNANAALASLRAWLLSQPQ  121 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            99999999999 9999999999988773

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.69  E-value=5.6e-05  Score=55.04  Aligned_cols=80  Identities=11%  Similarity=0.058  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHH
Q 024174          175 FAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWW  252 (271)
Q Consensus       175 eave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~w  252 (271)
                      +|++.++++++   .+|. ...+...++.++..+|+|++|++ ++...+.+  |.+...+...|.+|..+++ ++|.++|
T Consensus         3 ~a~~~~~~al~---~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~   76 (115)
T 2kat_A            3 AITERLEAMLA---QGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAW   76 (115)
T ss_dssp             CHHHHHHHHHT---TTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHH---hCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46667776664   2343 34577788999999999999999 77777666  8888899999999999999 9999999


Q ss_pred             HHHHhhcC
Q 024174          253 EEFAETID  260 (271)
Q Consensus       253 e~f~~lv~  260 (271)
                      ++-.++.|
T Consensus        77 ~~al~~~~   84 (115)
T 2kat_A           77 ESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99887765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.68  E-value=3.3e-05  Score=68.61  Aligned_cols=103  Identities=16%  Similarity=0.150  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---c----------ccchHHHHHHHHHHhcchHHHhh-hhhhc
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---P----------AYNVEMALVEILIYQGKYREALE-CNCLK  221 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e---e----------aynirmllvEilI~qGk~~EAL~-~~~L~  221 (271)
                      ....++..+..+.+.|++++|.+.+++|++....+..   .          ...+-..++.++..+|+|++|+. |+...
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4666889999999999999999999999876433210   0          00266778999999999999999 77766


Q ss_pred             ccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          222 DEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       222 ~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..+  |.+.+.++..|.+|..+++ ++|.++|++..++-|
T Consensus       258 ~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p  295 (338)
T 2if4_A          258 TEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP  295 (338)
T ss_dssp             HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred             HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            666  8999999999999999999 999999999988877

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.68  E-value=0.00014  Score=72.94  Aligned_cols=100  Identities=20%  Similarity=0.128  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      ++.+++..++..+...|+.++|++.+++|++..   |. .......++.++..+|+|+||+. |++..+-+  |.+...+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~   80 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF---PE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAY   80 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence            466777777888888888888888777777542   21 12334456666777777777777 55555545  6666677


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...|.+|.-+++ +||.++|++-.++-|
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P  108 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQINP  108 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            777777777777 777777776666655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.68  E-value=1.9e-05  Score=63.56  Aligned_cols=90  Identities=10%  Similarity=-0.037  Sum_probs=75.7

Q ss_pred             hcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-H
Q 024174          169 KYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-E  246 (271)
Q Consensus       169 kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~  246 (271)
                      .+|++++|++.++++++....++.....+-..++.++..+|+|++|+. ++...+.+  |.+...+...|.+|.-+++ +
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence            457889999999999875433333445677788999999999999999 77777766  8999999999999999999 9


Q ss_pred             HHHHHHHHHHhhcC
Q 024174          247 EAKKWWEEFAETID  260 (271)
Q Consensus       247 EA~k~we~f~~lv~  260 (271)
                      +|.++|++-.++.|
T Consensus        95 ~A~~~~~~al~~~~  108 (275)
T 1xnf_A           95 AAYEAFDSVLELDP  108 (275)
T ss_dssp             HHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhcCc
Confidence            99999999998877

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.67  E-value=0.00012  Score=67.81  Aligned_cols=104  Identities=19%  Similarity=0.153  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cc---------cchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PA---------YNVEMALVEILIYQGKYREALE-CNCLKD  222 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--ea---------ynirmllvEilI~qGk~~EAL~-~~~L~~  222 (271)
                      +....++..+..+.+.|++++|.+.+++|++.......  ++         ..+-.-++..+..+|+|++|+. |+...+
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            34667889999999999999999999999987644421  00         2455678888999999999999 777666


Q ss_pred             cCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          223 EQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       223 e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+  |.+...++..|.+|..+++ ++|.++|++-.++-|
T Consensus       346 ~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P  382 (457)
T 1kt0_A          346 LD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  382 (457)
T ss_dssp             HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             cC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            66  8999999999999999999 999999999998877

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.67  E-value=0.00024  Score=52.92  Aligned_cols=99  Identities=13%  Similarity=0.012  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .......+..+...|+.++|.+.++++++..   +. ...+-..++.++..+|+|++|++ ++...+.+  |.|...+.+
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~  120 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELD---KK-YIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMK  120 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence            4567788889999999999999999999753   22 23466788999999999999999 66766666  777766644


Q ss_pred             HHHH--HHhhCh-HHHHHHHHHHHhhcCC
Q 024174          236 KAII--YTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       236 k~II--YtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      .+..  |.-.+. ++|.+++++..++.+.
T Consensus       121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A          121 YQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence            4555  555566 9999999998888764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.66  E-value=0.00017  Score=62.54  Aligned_cols=100  Identities=14%  Similarity=0.086  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPA-YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eea-ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      +.......+..+...|+.++|.+.++++.+.   +|... .++-...+.++.-+|+++||+. ++++.+..  |.|...+
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~  203 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLL  203 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHH
Confidence            3445666777888899999999999988865   33321 2222234455555688888888 66777766  7787777


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-.|.+|.-+++ +||++++++-.++-|
T Consensus       204 ~~la~~~~~~g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          204 NGQAACHMAQGRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            778888888888 888888888777666

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.65  E-value=0.0003  Score=53.46  Aligned_cols=98  Identities=14%  Similarity=0.094  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC------
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD------  229 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D------  229 (271)
                      -.+.+.+...+.+.|++++|++..++|++.   +|.. ..+-.-++.++..+|+|++|+. |+...+-+  |.+      
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~   81 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSN-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKL   81 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHH
Confidence            445778889999999999999999999975   3432 2334457888999999999999 66543332  222      


Q ss_pred             -CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 -GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 -~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                       ++.+.-.|.+|.-+++ ++|.++|++-.+..|
T Consensus        82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence             2456667889999999 999999999877665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.64  E-value=0.00013  Score=67.86  Aligned_cols=99  Identities=13%  Similarity=0.047  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +......++..+...|++++|.+.++++++.   +|. ..+....++.++..+|+|++|++ |++..+.+  |.|...++
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~   95 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPG-HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIAL   95 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence            3455666777777777888887777777753   222 23455667777777777777777 55655555  67777777


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|..+++ +||.++|++-.++-|
T Consensus        96 ~la~~~~~~g~~~~A~~~~~~al~~~p  122 (568)
T 2vsy_A           96 WLGHALEDAGQAEAAAAAYTRAHQLLP  122 (568)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            77777777777 777777777776665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.61  E-value=0.00025  Score=62.84  Aligned_cols=98  Identities=17%  Similarity=0.042  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .......+..+...|+.++|.+.++++++....+    ..+...++.++..+|++++|+. ++...+.+  |.+...+..
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~  383 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTF  383 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHH
Confidence            3456777777888888888888888887643222    2556678888888888888888 66766666  788888888


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|.-+++ ++|.++|++-.++.|
T Consensus       384 l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          384 FAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            8888888888 888888888877766

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.60  E-value=0.00012  Score=62.41  Aligned_cols=97  Identities=13%  Similarity=0.070  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      ..+-..+..+...|++++|++.++++++..   |.. ..+-..++.++..+|+|++|++ ++...+.+  |.+...+...
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l  139 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGD-AEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMAL  139 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHH
Confidence            347778999999999999999999999753   322 4566788999999999999999 77777666  8999999999


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+|.-+++ ++|.+++++-.++.|
T Consensus       140 ~~~~~~~g~~~~A~~~~~~al~~~p  164 (365)
T 4eqf_A          140 AVSYTNTSHQQDACEALKNWIKQNP  164 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCc
Confidence            999999999 999999999988766

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.59  E-value=3.7e-05  Score=72.07  Aligned_cols=95  Identities=15%  Similarity=0.006  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      +...|..+...|++++|++.+++|++..   |.. ..+-..++.++..+|+|++|++ |++..+.+  |.+...+...|.
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~---p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~   82 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELN---PSN-AIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA   82 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC---Ccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            3444556677899999999999998753   322 4556678889999999999999 77777666  899999999999


Q ss_pred             HHHhhCh-HHHHHHHHHHHhhcC
Q 024174          239 IYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +|.-+++ +||.++|++-.++-|
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p  105 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKP  105 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999 999999999988877

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.59  E-value=0.0003  Score=59.15  Aligned_cols=103  Identities=17%  Similarity=0.084  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc------------------------------------------
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP------------------------------------------  193 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee------------------------------------------  193 (271)
                      +...+..++..+...|+.++|++.++++++........                                          
T Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  210 (368)
T 1fch_A          131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  210 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence            34567778888888899999998888877643322111                                          


Q ss_pred             -----ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          194 -----AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       194 -----aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                           ...+...++.++..+|+|++|+. ++...+.+  |.+...+...|.+|.-+++ ++|.++|++-.++-|
T Consensus       211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  282 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP  282 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                 23445667888888888888888 66666555  7788888888888888888 888888888877765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.58  E-value=0.00015  Score=58.85  Aligned_cols=105  Identities=19%  Similarity=0.159  Sum_probs=84.6

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC----CCcccchHHHHHHHHHHhcchHHHhh-hhhhccc------
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE----PEPAYNVEMALVEILIYQGKYREALE-CNCLKDE------  223 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e----~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e------  223 (271)
                      +....+..++..+...|+.++|++.++++++.+++.    ......+-..++.++..+|+|++|+. ++...+.      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            567789999999999999999999999999987652    33445667788999999999999999 5543321      


Q ss_pred             CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                      .-.|.....+...|.+|..+++ ++|.+++++-.++.
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  141 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR  141 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            1015567788889999999999 99999999988775

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.57  E-value=0.00031  Score=57.08  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=58.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174          163 EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT  241 (271)
Q Consensus       163 ~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt  241 (271)
                      ++..+...|++++|.+.++++++.   +|.. .++...++.++..+|++++|+. |+.....+  |.+...++..|.+|.
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK---APNN-VDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence            889999999999999999999964   3332 3567788999999999999999 77777666  787666665555554


Q ss_pred             hh
Q 024174          242 ML  243 (271)
Q Consensus       242 mL  243 (271)
                      ..
T Consensus       134 ~~  135 (208)
T 3urz_A          134 LT  135 (208)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.57  E-value=8.2e-05  Score=63.99  Aligned_cols=107  Identities=10%  Similarity=0.064  Sum_probs=83.7

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhccc---C-CCCC
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDE---Q-RIPS  228 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e---~-~~p~  228 (271)
                      ......+...+..+...|++++|++.++++++...+++...-.+-..++.++..+|+|++|+. +++..+.   . -.+.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            466778889999999999999999999999986433333334577889999999999999999 5543222   1 0145


Q ss_pred             CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          229 DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       229 D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..+.+...|.+|..+++ ++|.+++++-.++.+
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  157 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR  157 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            57788899999999999 999999998776643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.55  E-value=0.00026  Score=65.76  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +......++..+...|+.++|.+.++++++..   |.. ......+++++..+|++++|++ +++..+.+  |.+...+.
T Consensus        56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~  129 (568)
T 2vsy_A           56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA---PEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITA  129 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence            45668888999999999999999999999753   322 3466788999999999999999 77777666  88888899


Q ss_pred             HHHHHHHhh---Ch-HHHHHHHHHHHhhcCCCCCCC
Q 024174          235 YKAIIYTML---NM-EEAKKWWEEFAETIDDEEFDP  266 (271)
Q Consensus       235 ~k~IIYtmL---~k-~EA~k~we~f~~lv~~~~f~~  266 (271)
                      ..|.+|..+   ++ ++|.++|++-.+.-| +..++
T Consensus       130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~  164 (568)
T 2vsy_A          130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGV-GAVEP  164 (568)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHHHHHHTC-CCSCH
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhcCC-cccCh
Confidence            999999999   99 999999999988887 44433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.54  E-value=0.00054  Score=59.37  Aligned_cols=97  Identities=12%  Similarity=0.077  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      .++..+..+|..+...++.++|++.|++.+..- -+|.. -.+.+.++.++..+|++++|++ ++.       |.+...+
T Consensus        63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~-~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~  133 (291)
T 3mkr_A           63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRS-VDVTN-TTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECM  133 (291)
T ss_dssp             HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC-CCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHH
T ss_pred             hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-cCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHH
Confidence            467889999999999999999999999877410 02433 3568889999999999999997 444       5666788


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +..|.||..+|+ +||.+++++..++-|
T Consensus       134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p  161 (291)
T 3mkr_A          134 AMTVQILLKLDRLDLARKELKKMQDQDE  161 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence            888999999999 999999999888866

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00035  Score=61.19  Aligned_cols=97  Identities=13%  Similarity=-0.035  Sum_probs=43.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHH---hcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIY---QGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~---qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ..+..+...|+.++|.+.++++++...+++..  ...+-..++.++..   +|++++|++ ++...+.+  |.+...+..
T Consensus       377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~  454 (514)
T 2gw1_A          377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIG  454 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence            33444444444555555444444433322111  11134444455555   555555555 33333333  444444455


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|.-+++ ++|.++|++..++.|
T Consensus       455 la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          455 LAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            5555555555 555555555544444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.53  E-value=0.00038  Score=59.92  Aligned_cols=97  Identities=16%  Similarity=0.032  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      +....++..+...|+.++|.+.++++++....+    ..+-..++.++..+|++++|.. +++..+.+  |.+...+...
T Consensus       272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l  345 (388)
T 1w3b_A          272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNL  345 (388)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHH
Confidence            345666777777788888888888777653221    2344456777777888888888 66666555  7777778888


Q ss_pred             HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+|.-+++ +||.++|++..++-|
T Consensus       346 ~~~~~~~g~~~~A~~~~~~a~~~~p  370 (388)
T 1w3b_A          346 ASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            888888888 888888888877766

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.52  E-value=0.00035  Score=61.90  Aligned_cols=99  Identities=14%  Similarity=0.046  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchH--HHHHHHHHHh----------cchHHHhh-hhhhcccCCC
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVE--MALVEILIYQ----------GKYREALE-CNCLKDEQRI  226 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynir--mllvEilI~q----------Gk~~EAL~-~~~L~~e~~~  226 (271)
                      ....+..+...|+.++|.+.++++++....++..-..+.  ..++.++..+          |+|++|+. ++...+.+  
T Consensus       381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--  458 (537)
T 3fp2_A          381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--  458 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--
Confidence            344455555556666666666666555544433333332  3334555555          66666666 55555444  


Q ss_pred             CCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          227 PSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       227 p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.+...++..|.+|..+++ ++|.++|++-.++.|
T Consensus       459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  493 (537)
T 3fp2_A          459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR  493 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            6666667777777777777 777777777766665

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.51  E-value=0.00025  Score=51.34  Aligned_cols=104  Identities=17%  Similarity=0.065  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhc---ccC-CCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLK---DEQ-RIPSD  229 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~---~e~-~~p~D  229 (271)
                      ......++..+...|+.++|.+.++++++.+.+..  ...-.+-..++.++..+|+|++|.. ++...   .+. ..+..
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  128 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE  128 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence            45678889999999999999999999999887643  3334566778999999999999999 55322   221 01222


Q ss_pred             CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+.+...|.+|..+++ ++|.+++++-.++..
T Consensus       129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          129 GRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            5567788999999999 999999999888765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.51  E-value=0.00011  Score=53.45  Aligned_cols=63  Identities=16%  Similarity=0.129  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+...++.+++.+|+|++|++ ++...+.+  |.+...++..|.+|..+++ ++|.++|++-.++.+
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            345666777777777777777 55666555  7777777777777777777 777777777766654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.48  E-value=0.00057  Score=61.79  Aligned_cols=98  Identities=9%  Similarity=-0.032  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      +...-.++..+.+.|+.++|.+.++++++..   +. ....-..++.++..+|++++|++ +++..+..  |.|...+..
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~  446 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLF  446 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHH
Confidence            4445556677778888888888888777532   21 12244567777788888888888 66666555  777777777


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|.-.++ +||.++|++-.++.|
T Consensus       447 l~~~~~~~g~~~~A~~~~~~~~~~~~  472 (597)
T 2xpi_A          447 LGMQHMQLGNILLANEYLQSSYALFQ  472 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7888888888 888888887777665

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.47  E-value=0.00013  Score=51.35  Aligned_cols=86  Identities=13%  Similarity=0.128  Sum_probs=63.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIY  240 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY  240 (271)
                      ..|..+...|++++|++.++++++.   +|....++...++.++..+|+|++|++ ++...+.+  |.+...+.+     
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~-----   74 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQAR-----   74 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH-----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH-----
Confidence            4677888889999999999988863   444433377788888999999999999 66777666  777665433     


Q ss_pred             HhhCh-HHHHHHHHHHHhhcC
Q 024174          241 TMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       241 tmL~k-~EA~k~we~f~~lv~  260 (271)
                         +. ++|.+++++-..+-|
T Consensus        75 ---~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           75 ---KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             ---HHHHHHHHHHCCTTHHHH
T ss_pred             ---HHHHHHHHHHHHHhccCc
Confidence               34 777777776666655

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.45  E-value=0.00011  Score=59.40  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhc---ccC-CCCCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLK---DEQ-RIPSDGR  231 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~---~e~-~~p~D~R  231 (271)
                      ...+...+..+...|+.++|++.++++++...+++...-.+-..++.++..+|+|++|+. ++...   .+. ..+...+
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            456778899999999999999999999986433333334667788999999999999999 54422   111 0134467


Q ss_pred             chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          232 FPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+...|.+|..+++ ++|.+++++-.++.+
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  114 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISR  114 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            78889999999999 999999999887765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.45  E-value=0.0005  Score=57.96  Aligned_cols=103  Identities=19%  Similarity=0.244  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cccc-------hHHHHHHHHHHhcchHHHhh-hhhhccc---
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PAYN-------VEMALVEILIYQGKYREALE-CNCLKDE---  223 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e-eayn-------irmllvEilI~qGk~~EAL~-~~~L~~e---  223 (271)
                      ..+.++..+..+.+.|++++|++.-++|++...+.++ ++.+       .-.-++-.+...|+|+||+. |..-..-   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4566889999999999999999999999988765432 1222       33456677888999999999 6655544   


Q ss_pred             ----CCCCCCCCch----hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          224 ----QRIPSDGRFP----FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       224 ----~~~p~D~R~~----L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                          +  |.|...+    .-+|+.+.-|++ +||-+++++=.++.|
T Consensus        90 ~~e~~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           90 RGELN--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             HCCTT--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cccCC--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence                5  8888888    999999999999 999999999888877

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.43  E-value=0.00079  Score=51.86  Aligned_cols=106  Identities=12%  Similarity=0.001  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD-  229 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e---eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D-  229 (271)
                      .....+..++......|+.++|.+.++++++.+++.+.   ..-.+...++.++..+|+|++|+. +++-.+......| 
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  143 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ  143 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence            44566888999999999999999999999999886552   344567788999999999999999 5543221100122 


Q ss_pred             ---CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 ---GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 ---~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                         .+.+...|.+|..+++ ++|.+++++-.++..
T Consensus       144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence               2234778999999999 999999988776654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.41  E-value=0.0001  Score=62.24  Aligned_cols=105  Identities=13%  Similarity=0.097  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhh---hcccC-CCCCCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQ-RIPSDG  230 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~-~~p~D~  230 (271)
                      ....+-..+..+...|++++|++.++++++...+++...-.+-..++.++..+|+|++|+. +++   +.... ..|...
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            4566788899999999999999999999986333333334667788999999999999999 554   32221 013446


Q ss_pred             CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +.+...|.+|..+++ ++|.+++++-.++.+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  118 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISR  118 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            778889999999999 999999998877765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.40  E-value=0.00062  Score=57.63  Aligned_cols=104  Identities=13%  Similarity=0.142  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc-c--cchHHHHHHHHHHhcchHHHhh-hhh---hcccC-CCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP-A--YNVEMALVEILIYQGKYREALE-CNC---LKDEQ-RIP  227 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee-a--ynirmllvEilI~qGk~~EAL~-~~~---L~~e~-~~p  227 (271)
                      ....+...+......|++++|.+.+++|++.++..+.. .  ..+-.-++.++..+|+|++|+. +++   +..+. ...
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence            46678899999999999999999999999887765432 1  1466778999999999999999 553   22221 001


Q ss_pred             CCCCchhHHHHHHHhhCh-HHH-HHHHHHHHhhc
Q 024174          228 SDGRFPFYKAIIYTMLNM-EEA-KKWWEEFAETI  259 (271)
Q Consensus       228 ~D~R~~L~k~IIYtmL~k-~EA-~k~we~f~~lv  259 (271)
                      .-+..+...|.+|.-+++ ++| ..++++-..+.
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            115567889999999999 999 88888755443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.38  E-value=0.00074  Score=58.11  Aligned_cols=99  Identities=17%  Similarity=0.046  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      ++.....++..+...|+.++|++.++++++.   +| +...+...++.++..+|++++|.+ ++...+.+  |.+...+.
T Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~  173 (388)
T 1w3b_A          100 FIDGYINLAAALVAAGDMEGAVQAYVSALQY---NP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWS  173 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence            3455677777888888888888888877753   23 234456677788888888888888 66666555  77777777


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|.-.++ ++|.++|++-.++-|
T Consensus       174 ~l~~~~~~~g~~~~A~~~~~~al~~~p  200 (388)
T 1w3b_A          174 NLGCVFNAQGEIWLAIHHFEKAVTLDP  200 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            77888888888 888888887766655

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.37  E-value=0.00084  Score=45.56  Aligned_cols=82  Identities=18%  Similarity=0.096  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      .......++..+...|+.++|++.++++++..   +. ...+-..++.++..+|+|++|++ +++....+  |.+...+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~   81 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQ   81 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHH
Confidence            44556778888888999999999999988653   22 23456678888899999999998 66666666  78877777


Q ss_pred             HHHHHHHhh
Q 024174          235 YKAIIYTML  243 (271)
Q Consensus       235 ~k~IIYtmL  243 (271)
                      ..|.+|.-+
T Consensus        82 ~l~~~~~~~   90 (91)
T 1na3_A           82 NLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            777777544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.34  E-value=0.0024  Score=52.07  Aligned_cols=102  Identities=13%  Similarity=-0.005  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH------------------hcchHHHhh-h
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY------------------QGKYREALE-C  217 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~------------------qGk~~EAL~-~  217 (271)
                      .+..-+++.-+.+.|++++|++.++.+++..-+++. ..+....++.++..                  +|++++|++ +
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence            356778889999999999999999999865433322 22333444444443                  689999999 8


Q ss_pred             hhhcccCCCCCCCCch-----------------hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          218 NCLKDEQRIPSDGRFP-----------------FYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       218 ~~L~~e~~~p~D~R~~-----------------L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      +.+.+..  |.+.+.+                 +..|.+|--.++ ++|.++|++..+..|.
T Consensus       120 ~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  179 (225)
T 2yhc_A          120 SKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD  179 (225)
T ss_dssp             HHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence            8888877  8887665                 677889999999 9999999999999884

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.33  E-value=0.0003  Score=49.43  Aligned_cols=61  Identities=18%  Similarity=0.212  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC-chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR-FPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R-~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+..+..++.+|+|++|++ |++..+.+  |.+.. .++..|.+|..+++ ++|.++|++-.++-|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            3567888999999999999 77888777  89998 99999999999999 999999999999887

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.32  E-value=0.00063  Score=68.22  Aligned_cols=99  Identities=15%  Similarity=-0.050  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +......++..+...|+.++|++.+++|++..   |. ..+.-..++.++..+|+|++|++ |++..+-+  |.+...+.
T Consensus        42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~  115 (723)
T 4gyw_A           42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHS  115 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence            34567788888888899999988888888643   22 12344557778888888888888 66666666  88888888


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|.-+++ +||.++|++-.++-|
T Consensus       116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P  142 (723)
T 4gyw_A          116 NLASIHKDSGNIPEAIASYRTALKLKP  142 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88888888888 888888888887776

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.32  E-value=0.00054  Score=66.71  Aligned_cols=91  Identities=15%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             HhcCChhHHHHHHHHHHHHh----hcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHh
Q 024174          168 MKYGKPEFAVTLLKKVYEDC----KNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTM  242 (271)
Q Consensus       168 ~kSgk~deave~Le~A~eka----~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtm  242 (271)
                      ...|++++|++.++.+++.+    .+...+..++.+.++.+++.+|+|++|+. |++..+.+  |.|.+.+...|.+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHHH
Confidence            67799999999999988221    11223345677888999999999999999 77877777  9999999999999999


Q ss_pred             hCh-HHHHHHHHHHHhhcC
Q 024174          243 LNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       243 L~k-~EA~k~we~f~~lv~  260 (271)
                      +++ +||.++|++-.++-|
T Consensus       480 ~g~~~~A~~~~~~al~l~P  498 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFP  498 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHST
T ss_pred             cCCHHHHHHHHHHHHHhCC
Confidence            999 999999999999888

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.31  E-value=0.00045  Score=59.41  Aligned_cols=102  Identities=18%  Similarity=0.045  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhccc---CC-CCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKDE---QR-IPSD  229 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~e---~~-~p~D  229 (271)
                      ...+..++..+.. |++++|++.+++|++.......  ..-.+-.-++.++..+|+|++|+. |++..+.   +. .+.-
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC  194 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence            4567788888888 9999999999999998876542  334566778999999999999999 6653332   20 0111


Q ss_pred             CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+.++-.|++|.-+++ ++|.++|++.. +.|
T Consensus       195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p  225 (307)
T 2ifu_A          195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIP  225 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence            3456677888888899 99999999999 666

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.31  E-value=0.00033  Score=56.60  Aligned_cols=104  Identities=16%  Similarity=0.055  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccC----CCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ----RIPSD  229 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~----~~p~D  229 (271)
                      ...+...+..+...|+.++|.+.++++++.+.+..  .....+-..+++++..+|++++|+. +++..+..    -.+..
T Consensus       223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  302 (338)
T 3ro2_A          223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE  302 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            44567778888888999999999999988876643  3334556678888888999999988 55432221    00122


Q ss_pred             CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+.+...|.+|..+++ ++|.++|++..++.+
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          303 GRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            5567778889999999 999999999888776

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.30  E-value=0.00037  Score=64.48  Aligned_cols=97  Identities=10%  Similarity=-0.060  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhc---------CChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh--------cchHHHhh-hhh
Q 024174          158 NAIKAEAVKQMKY---------GKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ--------GKYREALE-CNC  219 (271)
Q Consensus       158 ~~lk~~A~~L~kS---------gk~deave~Le~A~eka~~e~eeaynirmllvEilI~q--------Gk~~EAL~-~~~  219 (271)
                      ..+..++..+...         |++++|++.+++|++...++    .++...++.++..+        |+|++|+. |+.
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~  246 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD----GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ  246 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence            6688888889888         99999999999999754222    34566778888888        99999999 777


Q ss_pred             hcccCCCC---CCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          220 LKDEQRIP---SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       220 L~~e~~~p---~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ....+  |   .+...++..|.+|..+++ +||.++|++-.++-|
T Consensus       247 al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  289 (474)
T 4abn_A          247 AEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP  289 (474)
T ss_dssp             HHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            66656  7   889999999999999999 999999999999887

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.30  E-value=0.00039  Score=53.62  Aligned_cols=103  Identities=10%  Similarity=-0.018  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhh---hcccCCCCCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQRIPSD  229 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~~~p~D  229 (271)
                      ....+..++......|+.++|.+.++++++.+++..  ...-.+-..++.++..+|+|++|+. +++   +.++.  +.|
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~  102 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL--PED  102 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCC
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--Ccc
Confidence            456688889999999999999999999999988753  3444566778999999999999999 554   33222  222


Q ss_pred             ----CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 ----GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 ----~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                          ...+...|.+|..+++ ++|.+++++-.++.+
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence                3457788999999999 999999998766543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.30  E-value=0.00093  Score=46.97  Aligned_cols=83  Identities=16%  Similarity=-0.039  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .......+..+...|+.++|.+.++++++..   +.. ..+...++.++..+|++++|.+ ++...+.+  |.+.+....
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~  119 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAY-SKAYGRMGLALSSLNKHVEAVAYYKKALELD--PDNETYKSN  119 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--ccchHHHHH
Confidence            4567788888999999999999999999753   322 4567888999999999999999 66766666  888888888


Q ss_pred             HHHHHHhhCh
Q 024174          236 KAIIYTMLNM  245 (271)
Q Consensus       236 k~IIYtmL~k  245 (271)
                      .|.+|..+++
T Consensus       120 l~~~~~~~~~  129 (131)
T 2vyi_A          120 LKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            8888887765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.30  E-value=0.0003  Score=56.58  Aligned_cols=64  Identities=13%  Similarity=-0.003  Sum_probs=57.8

Q ss_pred             cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          195 YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       195 ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+.-..++..+..+|+|++|+. |+.+...+  |.|...++..|.+|..+++ +||.+++++-.++-|
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence            3455677888889999999999 77888888  9999999999999999999 999999999999988

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.29  E-value=0.001  Score=57.05  Aligned_cols=101  Identities=16%  Similarity=0.097  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC----------
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ----------  224 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~----------  224 (271)
                      +.+.+..+|..+...|+.++|++.++++++.   +|.. ......++++++.+|++++|.. ++.+...+          
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~-~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQN-GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSC-HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcc-hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            4566788999999999999999999999863   4433 3678889999999999999988 55543211          


Q ss_pred             ----------------------CCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          225 ----------------------RIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       225 ----------------------~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                                            .-|.|...++--|.+|.-.++ +||..++++-.++-|
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p  250 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL  250 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence                                  137888888888999999999 999999998888776

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.26  E-value=0.00063  Score=62.95  Aligned_cols=98  Identities=14%  Similarity=0.022  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh---------cchHHHhh-hhhhcccCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ---------GKYREALE-CNCLKDEQR  225 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~q---------Gk~~EAL~-~~~L~~e~~  225 (271)
                      +.+....++..+...|++++|.+.+++|++.   +|.  ..+...++.++..+         |+|++|+. |++..+.+ 
T Consensus       136 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-  209 (474)
T 4abn_A          136 LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-  209 (474)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-
Confidence            3455677777777778888888887777753   344  36677777777777         88888887 66666555 


Q ss_pred             CCCCCCchhHHHHHHHhh--------Ch-HHHHHHHHHHHhhcC
Q 024174          226 IPSDGRFPFYKAIIYTML--------NM-EEAKKWWEEFAETID  260 (271)
Q Consensus       226 ~p~D~R~~L~k~IIYtmL--------~k-~EA~k~we~f~~lv~  260 (271)
                       |.|...+...|.+|..+        ++ ++|.++|++-.++-|
T Consensus       210 -p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          210 -VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             -CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence             77777778888888877        77 888888887777655

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.24  E-value=0.00045  Score=59.29  Aligned_cols=96  Identities=16%  Similarity=0.063  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHH------------------------------hh-cCCCcccchHHHHHHH
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYED------------------------------CK-NEPEPAYNVEMALVEI  204 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~ek------------------------------a~-~e~eeaynirmllvEi  204 (271)
                      +......+|..+...|+.++|.+.++++.+.                              +- .+| +..++.+.++.+
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~  228 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQ  228 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHH
Confidence            4556788888888888888888887765321                              11 122 334678899999


Q ss_pred             HHHhcchHHHhh-hhhhcccCCCCCC--CCchhHHHHHHHhhCh-HHHHHHHHH
Q 024174          205 LIYQGKYREALE-CNCLKDEQRIPSD--GRFPFYKAIIYTMLNM-EEAKKWWEE  254 (271)
Q Consensus       205 lI~qGk~~EAL~-~~~L~~e~~~p~D--~R~~L~k~IIYtmL~k-~EA~k~we~  254 (271)
                      +..+|++++|+. +.++...+  |.+  ...+..-+.+|..+|+ +||..++.+
T Consensus       229 l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          229 LHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            999999999999 88888877  777  6667777899999999 999988765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.22  E-value=0.00073  Score=58.99  Aligned_cols=104  Identities=12%  Similarity=-0.010  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhcc-----cCCCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKD-----EQRIP  227 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~-----e~~~p  227 (271)
                      ....+..++......|++++|.+.+++|++.+++.+.  ..-.+..-|+.++..+|+|++|+. +++..+     .+  |
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~  258 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--D  258 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--G
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--h
Confidence            4556778899999999999999999999999876543  334456678999999999999999 555443     34  6


Q ss_pred             CCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          228 SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       228 ~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ...+.+...|.+|.-+++ ++|.+++++-.++.+.
T Consensus       259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            668888999999999999 9999999999988773

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.21  E-value=0.00045  Score=46.93  Aligned_cols=63  Identities=19%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..-..++.++..+|+|++|++ ++...+.+  |.+...++..|.+|..+++ ++|.++|++..++-|
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p   74 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   74 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            455678889999999999999 77766666  8888899999999999999 999999999998876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.15  E-value=0.00034  Score=48.26  Aligned_cols=63  Identities=16%  Similarity=0.185  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+-..++.++..+|+|++|+. ++...+.+  |.+.+.++..|.+|..+++ ++|.++|++-.++.|
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            344567888999999999999 66777666  8899999999999999999 999999999998877

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.14  E-value=0.0022  Score=54.23  Aligned_cols=104  Identities=13%  Similarity=0.054  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC--
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD--  229 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D--  229 (271)
                      +.+..+...+..+...|++++|.+.++++++.....+..  .-.....++.++..+|+|++|+. +++..+......|  
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  152 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence            445667788889999999999999999998765432211  11223457777888999999999 5543332211122  


Q ss_pred             --CCchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174          230 --GRFPFYKAIIYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       230 --~R~~L~k~IIYtmL~k-~EA~k~we~f~~l  258 (271)
                        ++.+...|++|..+++ ++|.+++++-.++
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~  184 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              3466788999999999 9999999987743

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.00059  Score=47.88  Aligned_cols=61  Identities=23%  Similarity=0.153  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -..++.++..+|+|++|++ |+...+.+  |.+...+...|.+|.-+++ ++|.+++++-.++.|
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   69 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS   69 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            4567888999999999999 77777777  8999999999999999999 999999999998887

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.11  E-value=0.0016  Score=46.37  Aligned_cols=83  Identities=12%  Similarity=-0.075  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +.......+..+...|+.++|.+.++++++..   +. ...+...+++++..+|+|++|.+ ++...+.+  |.+...+.
T Consensus        49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~  122 (133)
T 2lni_A           49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAAD  122 (133)
T ss_dssp             CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHH
Confidence            35668888999999999999999999999753   22 33567788999999999999999 66666666  78877777


Q ss_pred             HHHHHHHhhC
Q 024174          235 YKAIIYTMLN  244 (271)
Q Consensus       235 ~k~IIYtmL~  244 (271)
                      ..+.+|..++
T Consensus       123 ~l~~~~~~~~  132 (133)
T 2lni_A          123 GYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            7777776554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.11  E-value=0.0006  Score=62.68  Aligned_cols=97  Identities=8%  Similarity=0.068  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhcCC-hhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          158 NAIKAEAVKQMKYGK-PEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk-~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ......+..+...|+ +++|++.+++|++..   |. .+.+-..++.++..+|+|++|+. |+...+.+  |++...+.+
T Consensus       132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~  205 (382)
T 2h6f_A          132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQH  205 (382)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHH
Confidence            345555555666665 666666666666422   21 23334445555556667777766 55555555  666777777


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|.-+++ +||.+++++-.++-|
T Consensus       206 lg~~~~~~g~~~eAl~~~~~al~l~P  231 (382)
T 2h6f_A          206 RQWVIQEFKLWDNELQYVDQLLKEDV  231 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            7777777777 777777776666655

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.10  E-value=0.00085  Score=49.30  Aligned_cols=85  Identities=15%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      ++......++..+...|++++|++.++++++..   |.. ..+...++.++..+|++++|+. ++.....+  |.|....
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~   98 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNH-QALRVFYAMVLYNLGRYEQGVELLLKIIAET--SDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence            466778999999999999999999999999653   332 4567778999999999999999 66666555  7777766


Q ss_pred             hHHHHHHHhhCh
Q 024174          234 FYKAIIYTMLNM  245 (271)
Q Consensus       234 L~k~IIYtmL~k  245 (271)
                      -|+..|....+.
T Consensus        99 ~~~~ai~~~~~~  110 (117)
T 3k9i_A           99 SYKQAILFYADK  110 (117)
T ss_dssp             HTHHHHHHHTTC
T ss_pred             HHHHHHHHHHHH
Confidence            777777666554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.09  E-value=0.0012  Score=56.80  Aligned_cols=100  Identities=14%  Similarity=0.002  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhccc---C-CCCCCCCc
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKDE---Q-RIPSDGRF  232 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~e---~-~~p~D~R~  232 (271)
                      +..++..+...|+.++|.+.++++++.+.+...  ....+...+++++..+|++++|+. +++..+.   . ..+...+.
T Consensus       266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  345 (411)
T 4a1s_A          266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA  345 (411)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence            334444444445555555555555544433211  122333444555555555555555 3221111   0 00111334


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                      ++..|.+|.-+++ ++|.++|++..++.
T Consensus       346 ~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          346 CWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4445555555555 55555555555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.08  E-value=0.0016  Score=59.86  Aligned_cols=100  Identities=13%  Similarity=0.076  Sum_probs=84.8

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcc-hHHHhh-hhhhcccCCCCCCCCc
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGK-YREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk-~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      ++.......+..+...|+.++|++.++++++..   |. .+.+-..++.++..+|+ |++|+. |+.....+  |++...
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a  168 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN---AA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQV  168 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---cc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHH
Confidence            556677778888899999999999999998643   32 34455667888888997 999999 77777777  999999


Q ss_pred             hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          233 PFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +...|.+|..+++ +||.+++++-.++-|
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP  197 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDA  197 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            9999999999999 999999999988877

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.06  E-value=0.0015  Score=55.26  Aligned_cols=106  Identities=13%  Similarity=0.142  Sum_probs=79.4

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---cccchHHHHHHHHHHhcchHHHhh-hhh---hcccC-CC
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---PAYNVEMALVEILIYQGKYREALE-CNC---LKDEQ-RI  226 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e---eaynirmllvEilI~qGk~~EAL~-~~~---L~~e~-~~  226 (271)
                      .....+..++......|++++|++.+++|++.+++-+.   ..-.+-.-++.++..+|+|++|+. +++   +..+. ..
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence            34566889999999999999999999999998875422   223355678889999999999999 553   22222 00


Q ss_pred             CCCCCchhHHHHHHHhhC-h-HHHHHHHHHHHhhcC
Q 024174          227 PSDGRFPFYKAIIYTMLN-M-EEAKKWWEEFAETID  260 (271)
Q Consensus       227 p~D~R~~L~k~IIYtmL~-k-~EA~k~we~f~~lv~  260 (271)
                      ..=++.+...|.+|.-++ . ++|.++|++-.++..
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            111567889999999999 5 999999998665543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.06  E-value=0.00086  Score=56.59  Aligned_cols=105  Identities=16%  Similarity=0.053  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---  229 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---  229 (271)
                      ....+...+..+...|++++|++.++++++.+.+.+  ...-.+-..++.++..+|++++|+. +++..+......|   
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  265 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV  265 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence            345577888889999999999999999999887653  2334467788999999999999999 5543322100112   


Q ss_pred             -CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 -GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 -~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                       .+.+...|.+|..+++ ++|.+++++-.++.+
T Consensus       266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence             5567788999999999 999999998877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.04  E-value=0.0019  Score=57.01  Aligned_cols=94  Identities=12%  Similarity=-0.032  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ......++..+.+.|++++|++.+++|++..   |. ....-..++.++..+|+|++|+. ++.....+  |.+...+..
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~  269 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELD---SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQ  269 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence            4567888999999999999999999999753   32 22455678899999999999999 77766666  889889999


Q ss_pred             HHHHHHhhCh-HHH-HHHHHHHH
Q 024174          236 KAIIYTMLNM-EEA-KKWWEEFA  256 (271)
Q Consensus       236 k~IIYtmL~k-~EA-~k~we~f~  256 (271)
                      .+.+|..+++ ++| ++.|++.-
T Consensus       270 l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          270 LAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 888 44555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.02  E-value=0.00031  Score=54.32  Aligned_cols=88  Identities=13%  Similarity=0.105  Sum_probs=68.7

Q ss_pred             HHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH-HHhhC
Q 024174          167 QMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII-YTMLN  244 (271)
Q Consensus       167 L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II-YtmL~  244 (271)
                      +...|++++|++.++++++.   +|.. ..+-..++.++..+|+|++|+. ++.....+  |.+...++..|.+ |...+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~---~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~   93 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA---NPQN-SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQAS   93 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH---CCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTT
T ss_pred             hhhccCHHHHHHHHHHHHHh---CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcC
Confidence            45678899999999999864   3322 3567789999999999999999 77777666  8888888889999 87888


Q ss_pred             h---HHHHHHHHHHHhhcC
Q 024174          245 M---EEAKKWWEEFAETID  260 (271)
Q Consensus       245 k---~EA~k~we~f~~lv~  260 (271)
                      +   ++|.+++++-.++-|
T Consensus        94 ~~~~~~A~~~~~~al~~~p  112 (177)
T 2e2e_A           94 QHMTAQTRAMIDKALALDS  112 (177)
T ss_dssp             TCCCHHHHHHHHHHHHHCT
T ss_pred             CcchHHHHHHHHHHHHhCC
Confidence            8   999999999988877

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.01  E-value=0.0023  Score=54.07  Aligned_cols=106  Identities=12%  Similarity=0.069  Sum_probs=76.0

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcc--cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPA--YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eea--ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      .+....+...+..+...|++++|.+.++++.+.....+...  ...-..++.++..+|+|++|+. +++..+......|.
T Consensus        72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  151 (293)
T 3u3w_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence            45567788889999999999999999999887443332221  1122346777777899999999 66655432112332


Q ss_pred             ----CchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          231 ----RFPFYKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       231 ----R~~L~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                          +.+..-|++|.-+++ ++|.+++++-.+..
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                247778999999999 99999999877544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.98  E-value=0.0018  Score=56.25  Aligned_cols=105  Identities=16%  Similarity=0.084  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhcc---cCCC-CC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKD---EQRI-PS  228 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~---e~~~-p~  228 (271)
                      ....+..++......|++++|.+.+++|++.+++.+.  ..-.+..-++.++..+|+|++|++ +++..+   +... |.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            4556788889999999999999999999999876542  233456678999999999999999 554322   2111 55


Q ss_pred             CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          229 DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       229 D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..+.+...|.+|.-+++ ++|.+++++-.++.+
T Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            57778899999999999 999999999877654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.84  E-value=0.0018  Score=46.70  Aligned_cols=62  Identities=11%  Similarity=0.127  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC---CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDG---RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~---R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      ...++..++.+|+|++|+. ++.+.+.+  |.+.   ..++..|.+|..+++ ++|.++|++..+..|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            3457888999999999999 77888776  7777   688999999999999 9999999999998883

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.83  E-value=0.0021  Score=50.25  Aligned_cols=98  Identities=14%  Similarity=0.050  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH-hcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY-QGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~-qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      +......++..+...|+.++|++.++.+.+.   +| .. .+..+++.+... +++..+|+. ++...+.+  |.|...+
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p-~~-~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--P~~~~~~  111 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLE---YQ-DN-SYKSLIAKLELHQQAAESPELKRLEQELAAN--PDNFELA  111 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GC-CH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--TTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cC-Ch-HHHHHHHHHHHHhhcccchHHHHHHHHHHhC--CCCHHHH
Confidence            3455677777777888888888777766532   22 11 222223333222 233334554 44444444  6667777


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +..|.+|.-+++ +||.++|++-.++-|
T Consensus       112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p  139 (176)
T 2r5s_A          112 CELAVQYNQVGRDEEALELLWNILKVNL  139 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence            777777777777 777777776666655

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.82  E-value=0.001  Score=50.51  Aligned_cols=63  Identities=19%  Similarity=0.013  Sum_probs=56.6

Q ss_pred             chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +....++..++.+|+|++|++ ++.+...+  |.|...++..|.+|..+++ ++|.++|++=.++-|
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            445667888999999999999 77888777  9999999999999999999 999999999988877

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.82  E-value=0.0052  Score=42.67  Aligned_cols=80  Identities=19%  Similarity=0.103  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .......+..+...|+.++|++.++++++..   +. ...+...++.++..+|++++|.. +++..+.+  |.+......
T Consensus        43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~  116 (125)
T 1na0_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQN  116 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---Cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence            3457778888999999999999999998753   22 23456688999999999999999 66776666  777666665


Q ss_pred             HHHHHHh
Q 024174          236 KAIIYTM  242 (271)
Q Consensus       236 k~IIYtm  242 (271)
                      -+.+|..
T Consensus       117 l~~~~~~  123 (125)
T 1na0_A          117 LGNAKQK  123 (125)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5666544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.81  E-value=0.0017  Score=63.20  Aligned_cols=98  Identities=16%  Similarity=0.120  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +.......|..+...|++++|.+.++++++..   |. ...+...++.++..+|+|++|++ |++..+.+  |.+...++
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~  505 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV---GW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKL  505 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence            34556677888889999999999999988643   22 13455677888888899999988 77766666  77777777


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..|.+|..+++ +| .+++++-.++-|
T Consensus       506 ~lg~~~~~~g~~~~-~~~~~~al~~~P  531 (681)
T 2pzi_A          506 ALAATAELAGNTDE-HKFYQTVWSTND  531 (681)
T ss_dssp             HHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred             HHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence            77777777777 77 777777766655

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.77  E-value=0.0033  Score=49.83  Aligned_cols=86  Identities=15%  Similarity=-0.031  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      ......+..+...|++++|++.++++++..   +. ...+-..++.++..+|+|++|++ ++.....+  |.+.......
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l  162 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID---KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSY  162 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHH
Confidence            557778888999999999999999999753   22 23456778899999999999999 66666666  8888888888


Q ss_pred             HHHHHhhCh-HHHH
Q 024174          237 AIIYTMLNM-EEAK  249 (271)
Q Consensus       237 ~IIYtmL~k-~EA~  249 (271)
                      +.++..+++ ++++
T Consensus       163 ~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          163 ELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHH
Confidence            999999988 7776

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.77  E-value=0.0024  Score=54.41  Aligned_cols=104  Identities=15%  Similarity=0.066  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHh-cchHHHhh-hhhhcccCCCCCC--
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQ-GKYREALE-CNCLKDEQRIPSD--  229 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~q-Gk~~EAL~-~~~L~~e~~~p~D--  229 (271)
                      ....+..++..+...|++++|++.+++|++...+.+  ..+-..-.-++.++..+ |+|++|+. |++-.+-.  |.+  
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~~  153 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQS  153 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTTC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCCC
Confidence            355688899999999999999999999999887653  23344556788899987 99999999 66433222  222  


Q ss_pred             ----CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          230 ----GRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       230 ----~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                          ...+.--|.+|.-+++ ++|.++|++-.++.|.
T Consensus       154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  190 (292)
T 1qqe_A          154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence                2335556899999999 9999999999988873

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.0017  Score=47.45  Aligned_cols=60  Identities=15%  Similarity=0.015  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          199 MALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       199 mllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..++..+..+|+|++|+. |++..+.+  |.|...+...|.+|..+++ ++|.+++++-.++-|
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p   69 (126)
T 3upv_A            8 RLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP   69 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            456788889999999999 77777777  8999999999999999999 999999999998877

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.75  E-value=0.0017  Score=48.99  Aligned_cols=61  Identities=8%  Similarity=-0.157  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -..++..++.+|+|++|+. ++.....+  |.+...++..|.+|..+++ ++|.++|++-.++-|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P   82 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP   82 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4567888899999999999 77888777  9999999999999999999 999999999988877

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.75  E-value=0.0049  Score=54.11  Aligned_cols=100  Identities=15%  Similarity=0.066  Sum_probs=69.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHH-----HHHHHHHHhcchHHHhh-hhhhc---ccCC---CCC
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEM-----ALVEILIYQGKYREALE-CNCLK---DEQR---IPS  228 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirm-----llvEilI~qGk~~EAL~-~~~L~---~e~~---~p~  228 (271)
                      -.++......|++++|++.+++|++..++......+.+.     -++.++..+|+|++|.. +++..   .+..   .+.
T Consensus        55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~  134 (472)
T 4g1t_A           55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE  134 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence            346778888999999999999999988765322222222     36788999999999998 44322   2211   122


Q ss_pred             CCCchhHHHHHHHhhC--h-HHHHHHHHHHHhhcC
Q 024174          229 DGRFPFYKAIIYTMLN--M-EEAKKWWEEFAETID  260 (271)
Q Consensus       229 D~R~~L~k~IIYtmL~--k-~EA~k~we~f~~lv~  260 (271)
                      ....+.-+|+.+.-++  . ++|.++|++-.++-|
T Consensus       135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A          135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            3344556676666555  4 899999999888877

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.73  E-value=0.0011  Score=50.32  Aligned_cols=59  Identities=20%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             HHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -++..+..+|+|++|+. |++-.+-+  |.+...+...|.+|..+++ ++|.++|++-.++-|
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            35677888999999999 77766666  9999999999999999999 999999999988876

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.73  E-value=0.0022  Score=49.92  Aligned_cols=64  Identities=16%  Similarity=-0.018  Sum_probs=57.1

Q ss_pred             cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          195 YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       195 ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+....++..+..+|+|++|+. ++.+...+  |.|...+...|.+|..+++ +||.++|++=.++-|
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3455667889999999999999 77888777  9999999999999999999 999999999988877

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.72  E-value=0.0024  Score=44.17  Aligned_cols=62  Identities=10%  Similarity=-0.047  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-..++.++..+|+|++|.+ ++...+.+  |.|...++..|.+|..+++ ++|.++|++-.++.|
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   69 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP   69 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            34567888899999999999 77777766  8899999999999999999 999999999988876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.71  E-value=0.002  Score=49.60  Aligned_cols=64  Identities=13%  Similarity=0.032  Sum_probs=56.8

Q ss_pred             cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          195 YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       195 ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -+.-..++.+++.+|+|++|+. |++..+.+  |.+...+...|.+|..+++ ++|.++|++-.++-|
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   76 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP   76 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3445678889999999999999 77877777  8999999999999999999 999999999998877

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.62  E-value=0.002  Score=49.00  Aligned_cols=59  Identities=15%  Similarity=0.070  Sum_probs=52.6

Q ss_pred             HHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..+..+..+|+|++|++ |++..+.+  |.|...+...|.+|..+++ ++|.++|++-.++-|
T Consensus        18 ~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   78 (126)
T 4gco_A           18 NKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS   78 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence            35777888999999999 77777667  9999999999999999999 999999999988876

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.60  E-value=0.0026  Score=46.30  Aligned_cols=63  Identities=17%  Similarity=0.052  Sum_probs=55.9

Q ss_pred             chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +.-..++..+..+|+|++|+. ++.....+  |.+...+...|.+|..+++ ++|.+++++-.++.|
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p   74 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG   74 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            445678889999999999999 77777777  8999999999999999999 999999999999877

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.58  E-value=0.0021  Score=56.46  Aligned_cols=99  Identities=10%  Similarity=0.028  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      +-.....|...++.++|++.+++|++.-.+++..-.++.+.++.+...+|++++|.+ +++..+.+  |.+...+...|.
T Consensus       178 ~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~  255 (472)
T 4g1t_A          178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAK  255 (472)
T ss_dssp             HHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHH
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHH
Confidence            334444567778888888888888765333333334455556667777899999999 66666666  888888999999


Q ss_pred             HHHhhCh-HHHHHHHHHHHhhcC
Q 024174          239 IYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +|..+++ ++|.+.+++-.+.-|
T Consensus       256 ~~~~~~~~~~A~~~~~~al~~~p  278 (472)
T 4g1t_A          256 FYRRKDEPDKAIELLKKALEYIP  278 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHcCchHHHHHHHHHHHHhCC
Confidence            9999999 999999999888877

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.57  E-value=0.0099  Score=48.78  Aligned_cols=90  Identities=10%  Similarity=-0.004  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      ......++..+...|+.++|++.++++.+   .+.   ......++.++..    +|++++|++ ++...+.    .+..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~   75 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSN   75 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHH
Confidence            34455566666666666666666666665   111   1234445556666    666666666 4443322    2444


Q ss_pred             chhHHHHHHHh----hCh-HHHHHHHHHHH
Q 024174          232 FPFYKAIIYTM----LNM-EEAKKWWEEFA  256 (271)
Q Consensus       232 ~~L~k~IIYtm----L~k-~EA~k~we~f~  256 (271)
                      .+..-|.+|.-    .++ ++|.++|++-.
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~  105 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKAC  105 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence            55555666655    555 66666665543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.52  E-value=0.0031  Score=49.32  Aligned_cols=95  Identities=13%  Similarity=0.132  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      .+-..|..+...|+.++|.+.++.+++..-++    ..+...++.+++.+|++++|+. ++.....+  | |.......+
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~   80 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIA   80 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHH
Confidence            46778889999999999999999888643222    3567888999999999999999 77777666  7 655444444


Q ss_pred             HHHHhh-Ch-HHHHHHHHHHHhhcC
Q 024174          238 IIYTML-NM-EEAKKWWEEFAETID  260 (271)
Q Consensus       238 IIYtmL-~k-~EA~k~we~f~~lv~  260 (271)
                      .++..- .. .+|.+++++-.++-|
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P  105 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANP  105 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHST
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCC
Confidence            343221 12 567888888877776

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.42  E-value=0.0076  Score=57.91  Aligned_cols=112  Identities=17%  Similarity=0.088  Sum_probs=78.5

Q ss_pred             CCChhhHHHH-------HHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CC--cccchHHHHHHHHHHhcchHHHhh-hh
Q 024174          151 GPSAEDVNAI-------KAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PE--PAYNVEMALVEILIYQGKYREALE-CN  218 (271)
Q Consensus       151 ~Ps~e~v~~l-------k~~A~~L~kSgk~deave~Le~A~eka~~e--~e--eaynirmllvEilI~qGk~~EAL~-~~  218 (271)
                      -||.+.+..+       ...|..+...|++++|+++++++++..++-  ++  ..-...-.|+.++..||+|+||+. |+
T Consensus       296 ~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          296 KPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3577766653       345567888999999999999999987654  22  222334458899999999999998 55


Q ss_pred             hhccc--CCCCCC----CCchhHHHHHHHhhCh-HHHHHHHHH----HHhhcCCC
Q 024174          219 CLKDE--QRIPSD----GRFPFYKAIIYTMLNM-EEAKKWWEE----FAETIDDE  262 (271)
Q Consensus       219 ~L~~e--~~~p~D----~R~~L~k~IIYtmL~k-~EA~k~we~----f~~lv~~~  262 (271)
                      +..+-  ...+.|    +..+.=-|.+|.-+|+ +||+..+++    +..+.+++
T Consensus       376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            42211  011222    5566677999999999 999998874    55556644

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.39  E-value=0.0038  Score=53.52  Aligned_cols=103  Identities=17%  Similarity=0.054  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcc---cCCC---CC
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKD---EQRI---PS  228 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~---e~~~---p~  228 (271)
                      ..+..++..+...|++++|.+.++++++.+...+..  .-.....++.++..+|+|++|+. +++..+   +...   |.
T Consensus        54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  133 (373)
T 1hz4_A           54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  133 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence            345556666667777777777777777766554322  22334556677777777777777 443222   1100   11


Q ss_pred             CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          229 DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       229 D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ....+...|.+|...++ ++|.+++++-.++.+
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A          134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            12233446667777777 777777777666655

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.33  E-value=0.025  Score=48.45  Aligned_cols=104  Identities=8%  Similarity=-0.055  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC----cccchHHHHHHHHHHhcchHHHhh-hhhhcccCC--CCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE----PAYNVEMALVEILIYQGKYREALE-CNCLKDEQR--IPSD  229 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e----eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~--~p~D  229 (271)
                      ...+..++..+...|++++|.+.++++++.+++...    ..-.....+++++..+|++++|.. +.+..+...  -+.+
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            445677888899999999999999999998876432    233455678999999999999999 555333220  0111


Q ss_pred             -CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 -GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 -~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                       ...+...|.+|...+. ++|..++++-.++.+
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence             2346678889999999 999999999888765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.32  E-value=0.018  Score=53.13  Aligned_cols=89  Identities=11%  Similarity=-0.005  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ......+|.-+.+.|++++|++.+++|++...++    ...-..++.++..+|+|++|+. |+...+.+  |.+...+..
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~  390 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQ  390 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence            4556788999999999999999999999754222    2344567888999999999999 77777666  899999999


Q ss_pred             HHHHHHhhCh-HHHHHH
Q 024174          236 KAIIYTMLNM-EEAKKW  251 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~  251 (271)
                      .+.+|..+++ ++|++.
T Consensus       391 l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          391 ISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            9999999999 777653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.32  E-value=0.004  Score=43.81  Aligned_cols=62  Identities=16%  Similarity=0.142  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-..++.++..+|+|++|+. ++...+.+  |.+...++..|.+|..+++ ++|.++|++-.++.|
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~   69 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence            34568889999999999999 77777666  8888999999999999999 999999999888766

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.31  E-value=0.0073  Score=54.79  Aligned_cols=91  Identities=12%  Similarity=0.035  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +...+-.+|..+.+.|++++|++.+++|++.   +|. ....-..++.++..+|+|++|++ ++...+.+  |.|.....
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~  345 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQA  345 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence            3455778888899999999999999999963   332 23455677888999999999999 77666666  88887788


Q ss_pred             HHHHHHHhhCh-HHHHHHH
Q 024174          235 YKAIIYTMLNM-EEAKKWW  252 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~w  252 (271)
                      ..+.++..+++ ++|++.|
T Consensus       346 ~l~~~~~~~~~~~~a~k~~  364 (370)
T 1ihg_A          346 ELLKVKQKIKAQKDKEKAA  364 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            88888998888 7776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.30  E-value=0.0057  Score=44.44  Aligned_cols=64  Identities=14%  Similarity=-0.038  Sum_probs=54.8

Q ss_pred             cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          195 YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       195 ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -+.-..++..+..+|+|++|++ ++...+.+  |.+   ...++..|.+|..+++ ++|.++|++..++.|
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   96 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG   96 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence            3455678889999999999999 77777666  666   7888899999999999 999999999998877

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.27  E-value=0.032  Score=47.53  Aligned_cols=99  Identities=10%  Similarity=-0.079  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ...-...+..+...|+.++|.+..+++++.   +|.....+-+.+++++.-+|++++|.+ |+.....+  |.+...++-
T Consensus        99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~  173 (308)
T 2ond_A           99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVT  173 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence            344566777788889999999998888852   333222267778888888999999988 76666554  655444443


Q ss_pred             HHHHH-HhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIY-TMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIY-tmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+.+. ..+++ ++|.+.|++-.++.|
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~p  200 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKYG  200 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            33331 22566 888888888777766

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.25  E-value=0.0064  Score=52.77  Aligned_cols=101  Identities=13%  Similarity=0.033  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchH-HHHHHHHHHhcc---hHHHhh-hhhhcccCCCCCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVE-MALVEILIYQGK---YREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynir-mllvEilI~qGk---~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      ...+-.++..+...|+.++|.+.+++|++.+++.....+... ..++.++..+|+   +++|+. ++.. +..  +....
T Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~--~~~~~  340 (383)
T 3ulq_A          264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLY--ADLED  340 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCH--HHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCH--HHHHH
Confidence            334445555555555555555555555555443221111111 224444444555   555554 2222 111  23344


Q ss_pred             chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          232 FPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+..-|.+|.-+++ ++|.++|++..++..
T Consensus       341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            56678999999999 999999999988876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.13  E-value=0.014  Score=55.15  Aligned_cols=112  Identities=12%  Similarity=0.146  Sum_probs=74.5

Q ss_pred             CCChhhHHHHHH----H---HHHHHhcCChhHHHHHHHHHHHHhhcC--CCccc--chHHHHHHHHHHhcchHHHhh-hh
Q 024174          151 GPSAEDVNAIKA----E---AVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAY--NVEMALVEILIYQGKYREALE-CN  218 (271)
Q Consensus       151 ~Ps~e~v~~lk~----~---A~~L~kSgk~deave~Le~A~eka~~e--~eeay--nirmllvEilI~qGk~~EAL~-~~  218 (271)
                      .|+.+++..+-.    .   .....+.|++++|+++++++++..++-  ++-..  ...-.|+.++..||+|+||+. |+
T Consensus       285 ~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  364 (433)
T 3qww_A          285 PPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ  364 (433)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            467777765432    1   222234578999999999999987654  22222  223358999999999999999 65


Q ss_pred             hhc---ccCC---CCCCCCchhHHHHHHHhhCh-HHHHHHHHH----HHhhcCCC
Q 024174          219 CLK---DEQR---IPSDGRFPFYKAIIYTMLNM-EEAKKWWEE----FAETIDDE  262 (271)
Q Consensus       219 ~L~---~e~~---~p~D~R~~L~k~IIYtmL~k-~EA~k~we~----f~~lv~~~  262 (271)
                      +..   ..-+   -|.=+..+.=-|.+|.-+|+ +||+..+++    +..+.+++
T Consensus       365 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~  419 (433)
T 3qww_A          365 KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD  419 (433)
T ss_dssp             HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence            422   1111   02225666778999999999 999998765    44555544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.05  E-value=0.013  Score=51.04  Aligned_cols=105  Identities=10%  Similarity=-0.019  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---cccchHHHHHHHHHHhcchHHHhh-hhhhcc---cC-CC
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---PAYNVEMALVEILIYQGKYREALE-CNCLKD---EQ-RI  226 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e---eaynirmllvEilI~qGk~~EAL~-~~~L~~---e~-~~  226 (271)
                      +.......++......|+.++|.+.+++|++.+++.+.   ..-..-..++.++..+|+|++|+. ++...+   +. -.
T Consensus       139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  218 (378)
T 3q15_A          139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND  218 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH
Confidence            44556788889999999999999999999999877543   234556678999999999999999 553222   21 00


Q ss_pred             CCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          227 PSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       227 p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                      +.-+..+..-|.+|..+++ ++|.+++++-.++.
T Consensus       219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~  252 (378)
T 3q15_A          219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS  252 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            1124456678999999999 99999999877643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.021  Score=49.54  Aligned_cols=93  Identities=16%  Similarity=0.132  Sum_probs=69.9

Q ss_pred             HhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCC----CCCCCchhHHHHHH
Q 024174          168 MKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRI----PSDGRFPFYKAIIY  240 (271)
Q Consensus       168 ~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~----p~D~R~~L~k~IIY  240 (271)
                      ...|+.++|.+.++.+++.+++..  .....+..-+++++.-+|+|++|++ ++++..+-..    +.....++.+|-+|
T Consensus       106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
T 4b4t_Q          106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY  185 (434)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            345788899999998888877653  2334577789999999999999999 6665443211    22245788899999


Q ss_pred             HhhCh-HHHHHHHHHHHhhcC
Q 024174          241 TMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       241 tmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..++. ++|+...++=....+
T Consensus       186 ~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          186 HKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHHhh
Confidence            99999 999999888776654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.93  E-value=0.01  Score=55.46  Aligned_cols=95  Identities=13%  Similarity=0.001  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ......+|..+...|++++|++.+++|++.   +|.. ...-..++.++..+|+|++|++ +++..+.+  |.|...+..
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~  113 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKY-IKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMK  113 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence            556888999999999999999999999864   3322 2345567889999999999999 77666656  888888888


Q ss_pred             HHHH--HHhhCh-HHHHHHHHHHHh
Q 024174          236 KAII--YTMLNM-EEAKKWWEEFAE  257 (271)
Q Consensus       236 k~II--YtmL~k-~EA~k~we~f~~  257 (271)
                      .+.+  |.-.++ +||.+.+++...
T Consensus       114 l~~~~~~~~~g~~~~A~~~~~~~~~  138 (477)
T 1wao_1          114 YQECNKIVKQKAFERAIAGDEHKRS  138 (477)
T ss_dssp             HHHHHHHHHHHHHCCC------CCS
T ss_pred             HHHHHHHHHHHHHHHHhccccccch
Confidence            8888  444466 899988875443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.90  E-value=0.008  Score=51.57  Aligned_cols=102  Identities=8%  Similarity=-0.057  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---  229 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---  229 (271)
                      ....+..++......|++++|++.+++|++...+..  ...-..-.-++.++.. |+|++|+. |++-.+-.  +.+   
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~~~~  151 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHTTCH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhCCCh
Confidence            355677888889999999999999999999886543  3334555668888877 99999999 66432221  222   


Q ss_pred             ---CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          230 ---GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       230 ---~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                         ...+.--|.+|.-+++ ++|.++|++-.++.+
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence               2334455889999999 999999999887765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.90  E-value=0.033  Score=45.60  Aligned_cols=90  Identities=12%  Similarity=-0.045  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHh----cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCC
Q 024174          158 NAIKAEAVKQMK----YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPS  228 (271)
Q Consensus       158 ~~lk~~A~~L~k----Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~  228 (271)
                      .....++..+..    .++.++|++.++++.+.-      ..+....++.++..    +|++++|++ ++...+.    .
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~  108 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K  108 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C
Confidence            345566666666    777777777777776531      23344456666666    777777776 4443322    2


Q ss_pred             CCCchhHHHHHHHh----hCh-HHHHHHHHHHHh
Q 024174          229 DGRFPFYKAIIYTM----LNM-EEAKKWWEEFAE  257 (271)
Q Consensus       229 D~R~~L~k~IIYtm----L~k-~EA~k~we~f~~  257 (271)
                      +...+..-|.+|.-    .++ ++|.++|++-.+
T Consensus       109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~  142 (273)
T 1ouv_A          109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD  142 (273)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence            44556666666666    666 777777665444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.89  E-value=0.0092  Score=50.25  Aligned_cols=87  Identities=11%  Similarity=0.084  Sum_probs=61.2

Q ss_pred             ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh------cchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhC
Q 024174          172 KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ------GKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLN  244 (271)
Q Consensus       172 k~deave~Le~A~eka~~e~eeaynirmllvEilI~q------Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~  244 (271)
                      ..++|.+..+.|++..-++++.-.+...++.+.--++      +.++||.. |++-.+-+  |.+...+.+.|.+|+.++
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhc
Confidence            4577777777777543333333333444444433222      33679999 77766667  999999999999999985


Q ss_pred             -----------h-HHHHHHHHHHHhhcC
Q 024174          245 -----------M-EEAKKWWEEFAETID  260 (271)
Q Consensus       245 -----------k-~EA~k~we~f~~lv~  260 (271)
                                 + +||.++|++=.++-|
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence                       6 999999998877776

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=95.83  E-value=0.017  Score=51.17  Aligned_cols=96  Identities=10%  Similarity=-0.008  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      ..-.+|..+.+.|++++|++.++++++..   |. ....-..++.++..+|+|++|+. ++.....+  |.|...+..-+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~  305 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE---EK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELR  305 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence            45678888999999999999999999753   32 12345667888999999999999 66666555  77777776667


Q ss_pred             HHHHhhCh--HHHHHHHHHHHhhcC
Q 024174          238 IIYTMLNM--EEAKKWWEEFAETID  260 (271)
Q Consensus       238 IIYtmL~k--~EA~k~we~f~~lv~  260 (271)
                      .++.....  +++++.|.+.-..-|
T Consensus       306 ~l~~~~~~~~~~a~~~~~~~l~~~p  330 (338)
T 2if4_A          306 ALAEQEKALYQKQKEMYKGIFKGKD  330 (338)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            77555444  888888888776665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.61  E-value=0.033  Score=40.14  Aligned_cols=62  Identities=16%  Similarity=0.104  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhc
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLK  221 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~  221 (271)
                      +....-.++..+...|++++|++.++++++..   |. ...+-..+++++..+|++++|.. +++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45678889999999999999999999999753   32 22366778999999999999999 66443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.45  E-value=0.027  Score=40.59  Aligned_cols=74  Identities=14%  Similarity=-0.067  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +......++..+...|++++|++.++++++..   |.. ......+++++..+|++++|.. ++...+..  |.+.....
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~   91 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTY-SVAWKWLGKTLQGQGDRAGARQAWESGLAAA--QSRGDQQV   91 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHTCHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccccHHH
Confidence            34567888999999999999999999999643   322 3355788999999999999999 66655443  44433333


Q ss_pred             H
Q 024174          235 Y  235 (271)
Q Consensus       235 ~  235 (271)
                      .
T Consensus        92 ~   92 (115)
T 2kat_A           92 V   92 (115)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.45  E-value=0.021  Score=51.82  Aligned_cols=101  Identities=15%  Similarity=-0.009  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC-CC
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS-DG  230 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~-D~  230 (271)
                      +++ ..-..+......+..++|++.|+.+.    +.+.+  ...+...++.++.-.|+++||+. |++-...+.-|. ..
T Consensus       134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~----~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~  208 (282)
T 4f3v_A          134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAG----KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACAR  208 (282)
T ss_dssp             HHH-HHHHHHHHHHHTTCHHHHHHHHTTGG----GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH
T ss_pred             chH-HHHHHHHHHHHcCCHHHHHHHHHHhh----ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH
Confidence            455 66777889999999999999998553    22322  34588999999999999999999 555542221033 22


Q ss_pred             CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      --.+++|+++-=+|+ +||..+|++=...-|
T Consensus       209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          209 AIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            356899999999999 999999998887766

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.40  E-value=0.077  Score=45.93  Aligned_cols=103  Identities=9%  Similarity=0.032  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccC-CCCCC---
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ-RIPSD---  229 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~-~~p~D---  229 (271)
                      ......+|..+...|++++|.+.|+++...+....  ...-++-+.+++++..+|+|++|.. ++...... ..+.+   
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  214 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT  214 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence            44567889999999999999999999998887643  3444556667777777999999998 55322111 01221   


Q ss_pred             -CCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          230 -GRFPFYKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       230 -~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                       ++.+.+-|++|.-.+. ++|.++|.+.-+..
T Consensus       215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          215 VAELDLMSGILHCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence             3445555666655666 88888776655443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.39  E-value=0.08  Score=48.50  Aligned_cols=100  Identities=11%  Similarity=-0.036  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      ........+..+...|+.++|.+.++++++.   ++.....+-+.+++++..+|++++|.+ ++.-.+..  |.+...++
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~  394 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYV  394 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHH
Confidence            4555667778888899999999999999863   333222356667777778899999998 66555443  55555566


Q ss_pred             HHHHH-HHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAII-YTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~II-YtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..+.+ |..+++ ++|.+.|++-.+..|
T Consensus       395 ~~a~~~~~~~~~~~~A~~~~e~al~~~p  422 (530)
T 2ooe_A          395 TAALMEYYCSKDKSVAFKIFELGLKKYG  422 (530)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHCC
Confidence            55555 445677 999999998888777

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.21  E-value=0.094  Score=44.63  Aligned_cols=87  Identities=10%  Similarity=0.015  Sum_probs=67.6

Q ss_pred             hcCCh-------hHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC-chhHHHHH
Q 024174          169 KYGKP-------EFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR-FPFYKAII  239 (271)
Q Consensus       169 kSgk~-------deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R-~~L~k~II  239 (271)
                      ..|+.       ++|.+.+++|++.+  +| .-..+-+.++.++..+|++++|.+ |+...+.+  |.|.. .++.-|-+
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~~~--~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~  143 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAISTL--LK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKF  143 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHTTT--TT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHH
T ss_pred             hccchhhcccchHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHH
Confidence            45776       88999888888632  23 233577788999999999999999 88777655  88876 67777777


Q ss_pred             HHhhCh-HHHHHHHHHHHhhcC
Q 024174          240 YTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       240 YtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +.-.+. ++|.+.|++-.++.|
T Consensus       144 ~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A          144 ARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHhcCHHHHHHHHHHHHhcCC
Confidence            777778 999999999888766

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.16  E-value=0.03  Score=51.59  Aligned_cols=95  Identities=12%  Similarity=0.119  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ...++-+|..+.  ++   |++.|++.++    ..........+++.++..+|++++|++ |++..+.+-.+.+...++.
T Consensus        71 ~~a~~~la~~~~--~~---a~~~l~~l~~----~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l  141 (310)
T 3mv2_B           71 GKVLDLYVQFLD--TK---NIEELENLLK----DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL  141 (310)
T ss_dssp             HHHHHHHHHHHT--TT---CCHHHHHTTT----TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHhc--cc---HHHHHHHHHh----cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHH
Confidence            344666666663  22   4555554442    222334445688888888888888888 7765444401255667777


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+-||-.+|+ ++|++..+++++.-|
T Consensus       142 ~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          142 AIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            7888888888 888888888877654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.04  E-value=0.029  Score=41.91  Aligned_cols=71  Identities=15%  Similarity=0.124  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174          156 DVNAIKAEAVKQMKYGK---PEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk---~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      +.+.+-..|.-|..+++   .++|.+.|++|++   -+|... ...++++.++..+|+|++|.. ++.+.+.+  |.|.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~-rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~--p~~~~   78 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNE-AALSLIANDHFISFRFQEAIDTWVLLLDSN--DPNLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTCC--CTTCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcc
Confidence            34445555555555544   5889999998885   344433 356777888888999999999 55777776  55655


Q ss_pred             c
Q 024174          232 F  232 (271)
Q Consensus       232 ~  232 (271)
                      .
T Consensus        79 ~   79 (93)
T 3bee_A           79 R   79 (93)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.02  E-value=0.042  Score=51.54  Aligned_cols=106  Identities=16%  Similarity=0.037  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCccc--chHHHHHHHHHHhcchHHHhh-hhhhccc--CCCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAY--NVEMALVEILIYQGKYREALE-CNCLKDE--QRIPSD  229 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e--~eeay--nirmllvEilI~qGk~~EAL~-~~~L~~e--~~~p~D  229 (271)
                      +..+.....++...|++++|+++.+++++..++-  ++-.+  ...-.|+.++..||+|+||+. |++..+-  ...+.+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            4445566777888999999999999999876543  22222  233457888999999999999 6643321  011222


Q ss_pred             ----CCchhHHHHHHHhhCh-HHHHHHHH----HHHhhcCCC
Q 024174          230 ----GRFPFYKAIIYTMLNM-EEAKKWWE----EFAETIDDE  262 (271)
Q Consensus       230 ----~R~~L~k~IIYtmL~k-~EA~k~we----~f~~lv~~~  262 (271)
                          +..+.=-|.+|.-+|+ +||+..++    .+..+.+++
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~  408 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE  408 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence                5556667999999999 99998766    455556644

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.82  E-value=0.048  Score=40.34  Aligned_cols=69  Identities=13%  Similarity=0.017  Sum_probs=56.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCC---CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEP---EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~---eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      .++..+...++++.|++-++.|++...++.   ..-.++-..++..+..+|++++|+. ++...+-+  |.|.+.
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~~~   82 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRA   82 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHH
Confidence            567778889999999999999998876552   3455777889999999999999999 66766666  888555

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=94.79  E-value=0.044  Score=50.45  Aligned_cols=95  Identities=13%  Similarity=0.126  Sum_probs=71.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCC------CCCCc
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIP------SDGRF  232 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~e~-eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p------~D~R~  232 (271)
                      .-+|-.+...|+.++|++.|++.++   .++ ...-+...++|||++.+|++++|.+ ++.+.+.+  |      .+.+.
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~--~d~~~~~d~~l~  178 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI--EDTVSGDNEMIL  178 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccccccchHHHH
Confidence            3566666677999999999998763   222 3566778899999999999999999 66666555  5      34678


Q ss_pred             hhHHHHHHHhhC--h-HHHHHHHHHHHhhcC
Q 024174          233 PFYKAIIYTMLN--M-EEAKKWWEEFAETID  260 (271)
Q Consensus       233 ~L~k~IIYtmL~--k-~EA~k~we~f~~lv~  260 (271)
                      .|..|.|+...+  + .+|-..|++..+..|
T Consensus       179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          179 NLAESYIKFATNKETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence            899999999988  6 888666666544443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.42  E-value=0.21  Score=37.17  Aligned_cols=65  Identities=17%  Similarity=-0.014  Sum_probs=56.9

Q ss_pred             cchHHHHHHHHHHhcc---hHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          195 YNVEMALVEILIYQGK---YREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       195 ynirmllvEilI~qGk---~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      -++...+++.++++++   .++|.+ +++-...+  |.+.|..++.|.+|-..++ ++|-.+|++--+.-|+
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3677889999999876   789988 77766667  9999999999999999999 9999999999888773

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=94.41  E-value=0.023  Score=43.42  Aligned_cols=69  Identities=16%  Similarity=0.070  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      .....-..|..+.+.|++++|++.++.+++.   +|.. ...-..++.++..+|+|++|+. |+....-+  |.|.
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~  131 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKR---EETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA  131 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence            4566788899999999999999999999975   3321 2345567888999999999999 66655555  6653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=94.02  E-value=0.048  Score=46.58  Aligned_cols=62  Identities=18%  Similarity=0.049  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-..++..+..+|+|++|+. |+.....+  |.+...+...|.+|.-+++ ++|.+.+++-.++-|
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p   69 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG   69 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            34567888999999999999 77877777  8999999999999999999 999999999888766

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=92.81  E-value=0.072  Score=48.34  Aligned_cols=92  Identities=12%  Similarity=0.021  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC-CCCchhHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS-DGRFPFYK  236 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~-D~R~~L~k  236 (271)
                      .-...|..|...|++++|.+.|+....   .+|...  .+-.++-+++-.|+|++|+. ++...... .|- ..-.+++.
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~L  177 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPV---AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAH  177 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHH
Confidence            345678899999999999999986653   234333  66777778888999999998 44332211 010 02357888


Q ss_pred             HHHHHhhCh-HHHHHHHHHHH
Q 024174          237 AIIYTMLNM-EEAKKWWEEFA  256 (271)
Q Consensus       237 ~IIYtmL~k-~EA~k~we~f~  256 (271)
                      |.++--||. +||..||++--
T Consensus       178 G~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHh
Confidence            999999999 99999999754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.26  E-value=0.2  Score=46.10  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174          164 AVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ  224 (271)
Q Consensus       164 A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~  224 (271)
                      +..|-+.|+.++|.+.++.++   |.+|.++ +.|.+++|+|++.|+|+.|++ .+-+.+-+
T Consensus         4 ~~~ll~~g~L~~al~~~~~~V---R~~P~da-~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~   61 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAI---KASPKDA-SLRSSFIELLCIDGDFERADEQLMQSIKLF   61 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHH---HTCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCHHHHHHHHHHHH---HhCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            346778899999999999887   4566554 689999999999999999998 55333333

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=91.13  E-value=0.31  Score=44.57  Aligned_cols=91  Identities=10%  Similarity=-0.022  Sum_probs=47.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHH-HhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174          164 AVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILI-YQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT  241 (271)
Q Consensus       164 A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI-~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt  241 (271)
                      +.-+...|+.++|.+.++.|++..   + ..+.+-+..+.+.. .+|++++|.+ |+...+..  |.+...++--+-++.
T Consensus       363 ~~~~~~~~~~~~A~~~~~~Al~~~---~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          363 MKFARRAEGIKSGRMIFKKAREDA---R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCT---T-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcc---C-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence            333445566777777777666421   1 11222222222211 3677777777 55544444  555444444444455


Q ss_pred             hhCh-HHHHHHHHHHHhhcC
Q 024174          242 MLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       242 mL~k-~EA~k~we~f~~lv~  260 (271)
                      -+|+ ++|..+|++..+..|
T Consensus       437 ~~g~~~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          437 HLNEDNNTRVLFERVLTSGS  456 (530)
T ss_dssp             TTTCHHHHHHHHHHHHHSCC
T ss_pred             hCCCHhhHHHHHHHHHhccC
Confidence            5566 777777777666543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.58  E-value=1.1  Score=41.30  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-Ccc-------------cchHH----HHHHHHHHhcchHHHhh-hhh
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-EPA-------------YNVEM----ALVEILIYQGKYREALE-CNC  219 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~-eea-------------ynirm----llvEilI~qGk~~EAL~-~~~  219 (271)
                      .+-..+......|+.++|.+.|+.|+..++-+. .+.             .+.++    .+++.+.-.|++++|+. +..
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            344445555567899999999999998887552 110             11222    34566667899999998 778


Q ss_pred             hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          220 LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       220 L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +...+  |-|-+.+-.-+..|.-.|. .||.++++++++..-
T Consensus       197 ~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~  236 (388)
T 2ff4_A          197 LTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  236 (388)
T ss_dssp             HHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            88888  8877766666666777777 999999999998754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=90.04  E-value=0.61  Score=44.01  Aligned_cols=70  Identities=10%  Similarity=-0.024  Sum_probs=52.1

Q ss_pred             CCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchH---HHHHHHHHHhcchHHHhh-hhh
Q 024174          148 VPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVE---MALVEILIYQGKYREALE-CNC  219 (271)
Q Consensus       148 ~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynir---mllvEilI~qGk~~EAL~-~~~  219 (271)
                      .|.+|+  -...+..+|......|++++|.++.+++++..++- +.+-.++-   .=|+.++..||+|+||+. |++
T Consensus       333 g~~Hp~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~  407 (433)
T 3qww_A          333 EDSNVY--MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK  407 (433)
T ss_dssp             CTTSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChhchH--HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            444442  34557788999999999999999999999887753 43333333   247888999999999998 654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=89.46  E-value=0.85  Score=36.91  Aligned_cols=12  Identities=25%  Similarity=0.058  Sum_probs=6.4

Q ss_pred             ChhHHHHHHHHH
Q 024174          172 KPEFAVTLLKKV  183 (271)
Q Consensus       172 k~deave~Le~A  183 (271)
                      +.++|++.+++|
T Consensus        68 ~~~~A~~~~~~A   79 (212)
T 3rjv_A           68 DYPQARQLAEKA   79 (212)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            455555555555

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=89.42  E-value=0.81  Score=37.01  Aligned_cols=91  Identities=14%  Similarity=0.027  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhc----chHHHhh-hhhhcccCCCCCCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQG----KYREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qG----k~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      +....-.++..+...++.++|++.+++|.+.  .++    .....|+.++.. |    ++++|++ ++.-.+    +.+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~----~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~   85 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDG----DALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSK   85 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCH----HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH----HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCH
Confidence            3456778888888899999999999999752  122    233345555554 5    7888887 444332    2344


Q ss_pred             CchhHHHHHHHh----hCh-HHHHHHHHHHHh
Q 024174          231 RFPFYKAIIYTM----LNM-EEAKKWWEEFAE  257 (271)
Q Consensus       231 R~~L~k~IIYtm----L~k-~EA~k~we~f~~  257 (271)
                      .....-|.+|.-    ... ++|.+||++=.+
T Consensus        86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  117 (212)
T 3rjv_A           86 SGEIVLARVLVNRQAGATDVAHAITLLQDAAR  117 (212)
T ss_dssp             HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence            455555666643    444 777777665443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=88.82  E-value=0.82  Score=43.84  Aligned_cols=108  Identities=8%  Similarity=-0.079  Sum_probs=68.2

Q ss_pred             CCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchH---HHHHHHHHHhcchHHHhh-hhhhc-
Q 024174          148 VPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVE---MALVEILIYQGKYREALE-CNCLK-  221 (271)
Q Consensus       148 ~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynir---mllvEilI~qGk~~EAL~-~~~L~-  221 (271)
                      .+.+|  .-...+..+|......|++++|.++.+++++..++- +.+-.++-   .-|+.++..||+|+||.. |++-. 
T Consensus       344 g~~Hp--~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          344 ADTNL--YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             CTTSH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44555  235558889999999999999999999999887653 33333332   347888899999999999 66421 


Q ss_pred             ------ccCC-CCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174          222 ------DEQR-IPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETI  259 (271)
Q Consensus       222 ------~e~~-~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv  259 (271)
                            +.+- .-.|.+.-|  +-.|.-+++ ++|+.-+.+=|+..
T Consensus       422 i~~~~lG~~Hp~~~~~~~~l--~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          422 ILLVTHGPSHPITKDLEAMR--MQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHTCTTSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1110 001111222  223444556 77777766666543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=88.08  E-value=1.9  Score=39.00  Aligned_cols=77  Identities=13%  Similarity=0.005  Sum_probs=36.7

Q ss_pred             cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHh--
Q 024174          170 YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTM--  242 (271)
Q Consensus       170 Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtm--  242 (271)
                      .++.++|++.+++|.+.   .   ..+....|+.++..    ++++++|++ |+...+.    .+......-|.+|.-  
T Consensus        92 ~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~  161 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALK---G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGD  161 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCC
Confidence            45555555555555431   1   11223344555554    556666665 3333322    233444555555544  


Q ss_pred             --hCh-HHHHHHHHHHH
Q 024174          243 --LNM-EEAKKWWEEFA  256 (271)
Q Consensus       243 --L~k-~EA~k~we~f~  256 (271)
                        .+. ++|.+||++-.
T Consensus       162 g~~~d~~~A~~~~~~a~  178 (490)
T 2xm6_A          162 GVTRDYVMAREWYSKAA  178 (490)
T ss_dssp             SSCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence              344 66666665543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=87.63  E-value=1.4  Score=41.26  Aligned_cols=72  Identities=11%  Similarity=0.050  Sum_probs=53.1

Q ss_pred             CCCCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchHH---HHHHHHHHhcchHHHhh-hhh
Q 024174          146 YTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVEM---ALVEILIYQGKYREALE-CNC  219 (271)
Q Consensus       146 ~~~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynirm---llvEilI~qGk~~EAL~-~~~  219 (271)
                      ...|.+|  .-...+..+|......|++++|+++.+++++..++- +.+-.++-+   -|+.++..||+|+||+. |++
T Consensus       320 ~lg~~h~--~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          320 RLPDINI--YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             CCCTTSH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCccch--HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            3345555  235568888889999999999999999999887653 433333333   46778888999999998 554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=86.86  E-value=0.73  Score=38.59  Aligned_cols=67  Identities=13%  Similarity=0.040  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174          156 DVNAIKAEAVKQMKYG---KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ  224 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSg---k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~  224 (271)
                      +.+..-..|.-|.+|.   ..++++++|++.++.-  .|+.-++.-..|+=-++..|+|++|++ ++.+.+.+
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  101 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            4566778888899998   5559999999888632  254445555566666688999999999 55676666

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.70  E-value=1  Score=42.03  Aligned_cols=90  Identities=14%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhh---hcccCCCCCC----CC
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQRIPSD----GR  231 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~~~p~D----~R  231 (271)
                      ...+|.-..+.|+.++|++.+.++.++|.... .-=++-+.++++.+..|+|..|.. +..   +.++.   .|    .|
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~---~d~~~~~~  209 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG---GDWERRNR  209 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---CCTHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC---CCHHHHHH
Confidence            56788888899999999999999999886543 333566667777777999999988 443   33332   33    46


Q ss_pred             chhHHHHHHHhhCh-HHHHHHHH
Q 024174          232 FPFYKAIIYTMLNM-EEAKKWWE  253 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA~k~we  253 (271)
                      ...|+|+++--.++ .+|.++|-
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~  232 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLV  232 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChHHHHHHHHH
Confidence            77899999888888 88887653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=86.14  E-value=2.8  Score=37.85  Aligned_cols=88  Identities=10%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             HHHHHHHHHh----cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCCCC
Q 024174          160 IKAEAVKQMK----YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       160 lk~~A~~L~k----Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      .-.++.....    .++.++|++.+++|.+.   +   ..+....|+.++..    ++++++|++ ++...+.    .|.
T Consensus       114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~  183 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ---G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNV  183 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCH
Confidence            3444555555    67888888888887652   1   23455667777776    788999998 5555543    366


Q ss_pred             CchhHHHHHHHh----hCh-HHHHHHHHHHHh
Q 024174          231 RFPFYKAIIYTM----LNM-EEAKKWWEEFAE  257 (271)
Q Consensus       231 R~~L~k~IIYtm----L~k-~EA~k~we~f~~  257 (271)
                      .....-|.+|.-    .+. ++|.+||++=.+
T Consensus       184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  215 (490)
T 2xm6_A          184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSAT  215 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence            677777888876    666 889888887544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=85.63  E-value=0.76  Score=38.48  Aligned_cols=58  Identities=17%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhcchHHHhh-hhhhcccCCCCC-------CCC-----chhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174          199 MALVEILIYQGKYREALE-CNCLKDEQRIPS-------DGR-----FPFYKAIIYTMLNM-EEAKKWWEEFAET  258 (271)
Q Consensus       199 mllvEilI~qGk~~EAL~-~~~L~~e~~~p~-------D~R-----~~L~k~IIYtmL~k-~EA~k~we~f~~l  258 (271)
                      +..+..+...|+|+||+. |..-..-+  |.       |..     .|.-+|.++.-|++ +||-.++++=.++
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            456777888999999999 77533333  44       333     78889999999999 9999999988777

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=84.67  E-value=0.76  Score=43.58  Aligned_cols=73  Identities=15%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      ...+|..+...|+.++|...++.|++.-   +.  ...-.+++.++.+.|++++|.. |++-..-+  |.+-..+||+.+
T Consensus       280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~~~~l  352 (372)
T 3ly7_A          280 YQIKAVSALVKGKTDESYQAINTGIDLE---MS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYWIENG  352 (372)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHHHhCc
Confidence            4445555556689999999999888752   32  1223678888889999999998 76555455  888777888765


Q ss_pred             H
Q 024174          239 I  239 (271)
Q Consensus       239 I  239 (271)
                      +
T Consensus       353 ~  353 (372)
T 3ly7_A          353 I  353 (372)
T ss_dssp             S
T ss_pred             e
Confidence            4

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=83.69  E-value=2.1  Score=40.47  Aligned_cols=91  Identities=13%  Similarity=0.053  Sum_probs=60.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHH--HHHhcchHHHhh-hhh-hcccCCCCCC----CCch
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEI--LIYQGKYREALE-CNC-LKDEQRIPSD----GRFP  233 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEi--lI~qGk~~EAL~-~~~-L~~e~~~p~D----~R~~  233 (271)
                      .++.-+...|++.+|.+++++..+.|++.....+-+++.+.|+  +..+|++.++-. +.. ..--+.++.|    ++..
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            5667778899999999999999999987433445555555444  444788777765 431 1111111233    5667


Q ss_pred             hHHHHHHH-hhCh-HHHHHHH
Q 024174          234 FYKAIIYT-MLNM-EEAKKWW  252 (271)
Q Consensus       234 L~k~IIYt-mL~k-~EA~k~w  252 (271)
                      .|.||+|- --++ ++|..+|
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F  204 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYF  204 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHH
Confidence            88888887 7777 7776665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=83.49  E-value=7.6  Score=36.83  Aligned_cols=94  Identities=14%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      .-.+...+-+.|+.++|++++++..+   ....+--..=-.|+..+...|++++|.+ ++++.+....|   -..-|.++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~---~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P---d~~ty~~L  181 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKA---FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP---EEPELAAL  181 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC---CHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---CHHHHHHH
Confidence            34455567788999999999997643   2222111112346778888999999999 77888776434   24678888


Q ss_pred             HHHhhC--h-HHHHHHHHHHHhhc
Q 024174          239 IYTMLN--M-EEAKKWWEEFAETI  259 (271)
Q Consensus       239 IYtmL~--k-~EA~k~we~f~~lv  259 (271)
                      |-....  + ++|.+.+++.++..
T Consensus       182 i~~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          182 LKVSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHhC
Confidence            877654  4 99999999988754

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=83.42  E-value=1.5  Score=36.75  Aligned_cols=86  Identities=14%  Similarity=0.076  Sum_probs=60.0

Q ss_pred             hHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh---cchHHHhh-hhhhcccCCCCCCCCchhH-HHHHHHhhCh-HH
Q 024174          174 EFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ---GKYREALE-CNCLKDEQRIPSDGRFPFY-KAIIYTMLNM-EE  247 (271)
Q Consensus       174 deave~Le~A~eka~~e~eeaynirmllvEilI~q---Gk~~EAL~-~~~L~~e~~~p~D~R~~L~-k~IIYtmL~k-~E  247 (271)
                      .+.++.++++|+........-.+.+.-++=-||.-   +++++|.. .+++.+++ .|.+-|=+|| =|+-|.=++. ++
T Consensus        11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence            34456666677665443334555666666667764   48999999 77777765 1434455555 4888888888 99


Q ss_pred             HHHHHHHHHhhcC
Q 024174          248 AKKWWEEFAETID  260 (271)
Q Consensus       248 A~k~we~f~~lv~  260 (271)
                      |.++++..-+.-|
T Consensus        90 A~~y~~~lL~ieP  102 (152)
T 1pc2_A           90 ALKYVRGLLQTEP  102 (152)
T ss_dssp             HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999999888

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=83.28  E-value=4.1  Score=37.17  Aligned_cols=86  Identities=9%  Similarity=-0.003  Sum_probs=39.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHhc---chHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          163 EAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVEMALVEILIYQG---KYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       163 ~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynirmllvEilI~qG---k~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      ++......+..+++++..+..++.+.+. +.    ....|+.++..+|   ++++|++ ++.-.+.+  +.++..+..-|
T Consensus       147 Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg  220 (452)
T 3e4b_A          147 QVLLYRTQGTYDQHLDDVERICKAALNTTDI----CYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVA  220 (452)
T ss_dssp             HHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHH
T ss_pred             HHHHHHcCCCcccCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence            3444444455555554444444433322 22    4445555555566   6666666 44444333  34444334445


Q ss_pred             HHHHhh----Ch-HHHHHHHHH
Q 024174          238 IIYTML----NM-EEAKKWWEE  254 (271)
Q Consensus       238 IIYtmL----~k-~EA~k~we~  254 (271)
                      .+|.-.    .. ++|.+||++
T Consensus       221 ~~y~~g~~~~~d~~~A~~~~~~  242 (452)
T 3e4b_A          221 RVLGDATLGTPDEKTAQALLEK  242 (452)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHH
T ss_pred             HHHhCCCCCCCCHHHHHHHHHH
Confidence            555322    22 555555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=81.93  E-value=1.8  Score=39.46  Aligned_cols=90  Identities=12%  Similarity=-0.011  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhcC---ChhHHHHHHHHHHHHhhcCCCcc--cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174          159 AIKAEAVKQMKYG---KPEFAVTLLKKVYEDCKNEPEPA--YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF  232 (271)
Q Consensus       159 ~lk~~A~~L~kSg---k~deave~Le~A~eka~~e~eea--ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~  232 (271)
                      ..-.++..+.+.|   +.++|++.+++|.+.  ..+...  +++..++.+-....+++++|++ |+...     |.|...
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a  250 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR--GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPAS  250 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHH
Confidence            4566676777788   888888888887742  122333  3444333332333367888887 44443     345566


Q ss_pred             hhHHHHH-H--HhhCh-HHHHHHHHHH
Q 024174          233 PFYKAII-Y--TMLNM-EEAKKWWEEF  255 (271)
Q Consensus       233 ~L~k~II-Y--tmL~k-~EA~k~we~f  255 (271)
                      ...-|.+ |  .-.+. ++|.+||++=
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~A  277 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNG  277 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            6666766 4  33444 7777777653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=81.00  E-value=7.6  Score=33.23  Aligned_cols=66  Identities=12%  Similarity=0.053  Sum_probs=54.3

Q ss_pred             CCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc---CC------------------CcccchHHHHHHHHHHhc
Q 024174          151 GPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN---EP------------------EPAYNVEMALVEILIYQG  209 (271)
Q Consensus       151 ~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~---e~------------------eeaynirmllvEilI~qG  209 (271)
                      .+.+.....+-+.|.-+-..|.+..|...++.|+..++.   .+                  ..+.+++--|++-++-.|
T Consensus        57 ~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~  136 (167)
T 3ffl_A           57 FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLK  136 (167)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHC
Confidence            344566778999999999999999999999999877763   11                  234579999999999999


Q ss_pred             chHHHhh
Q 024174          210 KYREALE  216 (271)
Q Consensus       210 k~~EAL~  216 (271)
                      ++++|+.
T Consensus       137 ~~~~Ai~  143 (167)
T 3ffl_A          137 QDKDAIA  143 (167)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9999995

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=80.45  E-value=4.2  Score=30.97  Aligned_cols=86  Identities=13%  Similarity=-0.051  Sum_probs=59.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          163 EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       163 ~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      ++......+..++|++.+++|.+.  .++.    -...|+.++..    ++++++|++ ++.-.+.    .|......-|
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~----a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a~~~Lg  100 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGN----GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDGCLILG  100 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHH----HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHH----HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHHHHHHH
Confidence            666666667778899999988763  2233    33455666666    889999999 5543332    4556677778


Q ss_pred             HHHHh----hCh-HHHHHHHHHHHhh
Q 024174          238 IIYTM----LNM-EEAKKWWEEFAET  258 (271)
Q Consensus       238 IIYtm----L~k-~EA~k~we~f~~l  258 (271)
                      .+|.-    ... ++|.+||++=.+.
T Consensus       101 ~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          101 YKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            88877    556 9999999875543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.47
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.36
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.26
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.23
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.14
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.1
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.06
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.06
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.94
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.73
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.46
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.45
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.38
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.34
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.12
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.12
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.1
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.97
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.78
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.78
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.7
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.61
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.49
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.36
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.2
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.11
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.77
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.68
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.48
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.48
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	95.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	95.12
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.84
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	93.64
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	92.55
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	91.36
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	90.98
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.59
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	89.55
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	89.41
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	88.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	88.08
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	85.09

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=8.1e-09  Score=77.40  Aligned_cols=100  Identities=25%  Similarity=0.227  Sum_probs=88.6

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      |.|+.|+..+..+.+.|++++|++..+++++.   +|+.. .+-..++.++..+|+|++|+. |....+.+  |.|.+.+
T Consensus         1 ~~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~---~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~   74 (117)
T d1elwa_           1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNH-VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGY   74 (117)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcch-hhhhcccccccccccccccchhhhhHHHhc--cchhhHH
Confidence            46888999999999999999999999999964   44433 467778999999999999999 77766667  9999999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +..|.+|..++. +||.++|++-.++-|
T Consensus        75 ~~~g~~~~~~~~~~~A~~~~~~a~~~~p  102 (117)
T d1elwa_          75 SRKAAALEFLNRFEEAKRTYEEGLKHEA  102 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            999999999999 999999999999887

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.1e-07  Score=70.85  Aligned_cols=100  Identities=14%  Similarity=0.023  Sum_probs=86.2

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      +....|+..+..+.+.|++++|++.++++++.   +|. .-.+-.-++.+++..|++++|+. |+...+-+  |.+.+.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~---~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~   81 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL---NPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGY   81 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc---chh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHH
Confidence            34577999999999999999999999999975   332 23344568899999999999999 77776666  9999999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...|.+|..+++ +||.+++++..++-|
T Consensus        82 ~~~g~~~~~~g~~~eA~~~~~~a~~~~p  109 (159)
T d1a17a_          82 YRRAASNMALGKFRAALRDYETVVKVKP  109 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            999999999999 999999999999887

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=7.3e-07  Score=68.51  Aligned_cols=98  Identities=11%  Similarity=0.019  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      ...|+.....+.+.|++++|++..++|++.   +|... .+-.-++.++...|+|++|+. |+...+-+  |.....++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~-~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~   77 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVA-VYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFF   77 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH-HHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHH
Confidence            456888999999999999999999999975   34322 233446888999999999999 77777666  999999999


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|.-+++ ++|.++|++-.++-|
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            9999999999 999999999888877

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2e-06  Score=67.86  Aligned_cols=103  Identities=16%  Similarity=0.105  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcc----cchHH-------HHHHHHHHhcchHHHhh-hhhhccc
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPA----YNVEM-------ALVEILIYQGKYREALE-CNCLKDE  223 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eea----ynirm-------llvEilI~qGk~~EAL~-~~~L~~e  223 (271)
                      ....++..+..+.+.|++++|++.-++|++.........    ..+..       -++..++-+|+|++|+. |....+.
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            366788999999999999999999999998866543211    11111       25677788999999999 7777777


Q ss_pred             CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +  |.+.+.+...|.+|..+++ ++|.+++++-.++-|
T Consensus        92 ~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P  127 (170)
T d1p5qa1          92 D--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  127 (170)
T ss_dssp             C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             c--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            7  9999999999999999999 999999999998877

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=4.3e-06  Score=66.10  Aligned_cols=101  Identities=15%  Similarity=0.069  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      +....+-..++.....|++++|++..++|++.-   |.. .++-..++.++..+|+|++|++ |+...+.+  |.+...+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~---p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~  108 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDM-PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAH  108 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CCC-HHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhH
Confidence            456678888999999999999999999999753   322 2344568899999999999999 77777777  8999999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      +..|++|..+++ ++|.++|++..+.-|.
T Consensus       109 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_         109 LNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            999999999999 9999999999988773

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.22  E-value=4e-06  Score=65.02  Aligned_cols=102  Identities=16%  Similarity=0.093  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--------ccc----hHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--------AYN----VEMALVEILIYQGKYREALE-CNCLKDE  223 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--------ayn----irmllvEilI~qGk~~EAL~-~~~L~~e  223 (271)
                      ...++.....+.+.|++.+|++.-++|++.+......        ...    +..=++..++.+|+|++|+. |+.....
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            4458889999999999999999999999877544211        111    11227888888999999999 7777777


Q ss_pred             CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +  |.+.+.+..+|.+|.-+++ ++|..+|++-.++-|
T Consensus        97 ~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          97 D--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             S--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             c--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7  9999999999999999999 999999999999988

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.17  E-value=2.7e-06  Score=62.96  Aligned_cols=92  Identities=17%  Similarity=0.015  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      ..-..+..++..|+.++|+..++++++.   +|. ..++-..++.++..+|++++|.. ++....-+  |.+...++.-|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la   91 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA   91 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc---ccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHH
Confidence            3456788999999999999999999864   343 23566778999999999999999 66666666  99999999999


Q ss_pred             HHHHhhCh-HHHHHHHHHHH
Q 024174          238 IIYTMLNM-EEAKKWWEEFA  256 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~  256 (271)
                      ++|.-+|+ ++|.+++++|-
T Consensus        92 ~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          92 VSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHh
Confidence            99999999 99999999983

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.14  E-value=8.1e-06  Score=63.84  Aligned_cols=103  Identities=18%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc-------ccchH----HHHHHHHHHhcchHHHhh-hhhhccc
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP-------AYNVE----MALVEILIYQGKYREALE-CNCLKDE  223 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee-------aynir----mllvEilI~qGk~~EAL~-~~~L~~e  223 (271)
                      ..+.++..+..+.+.|++.+|++..++|+.........       ...+.    .=++.++..+|+|++|+. |+...+.
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            35679999999999999999999999999877554211       11111    125777788999999999 7776666


Q ss_pred             CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      +  |.+...++..|-+|..+++ ++|.++|++-.++-|
T Consensus        94 ~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P  129 (168)
T d1kt1a1          94 D--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  129 (168)
T ss_dssp             C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred             c--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7  9999999999999999999 999999999988876

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.7e-06  Score=67.54  Aligned_cols=98  Identities=18%  Similarity=0.058  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .......+..+...|+.++|.+.++++++..   |. ..++-..++.++..+|++++|++ |+...+.+  |.+.+.++.
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~  245 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYN  245 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccc---cc-cccchhhhhhcccccccchhHHHHHHHHHHHh--hccHHHHHH
Confidence            4456778888999999999999999998643   32 23456678999999999999999 77666666  899999999


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|.-+++ +||.+.|++-.++.|
T Consensus       246 lg~~~~~~g~~~~A~~~~~~al~l~p  271 (323)
T d1fcha_         246 LGISCINLGAHREAVEHFLEALNMQR  271 (323)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            9999999999 999999999999887

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.06  E-value=7.1e-06  Score=63.72  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC---CC--cccc-------hHHHHHHHHHHhcchHHHhh-hhhhcccCC
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE---PE--PAYN-------VEMALVEILIYQGKYREALE-CNCLKDEQR  225 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e---~e--eayn-------irmllvEilI~qGk~~EAL~-~~~L~~e~~  225 (271)
                      .++..+..+.+.|++++|++..++|++.....   ..  ....       +-.-++.+++..|+|++|+. |+.....+ 
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-  107 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  107 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-
Confidence            47788888999999999999999887654432   11  1111       12335777888999999999 88777666 


Q ss_pred             CCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          226 IPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       226 ~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                       |.+++.++..|.+|--|++ ++|.+.|++-.++-|.
T Consensus       108 -p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~  143 (169)
T d1ihga1         108 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  143 (169)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             -hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence             9999999999999999999 9999999999999873

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=7.6e-06  Score=65.59  Aligned_cols=98  Identities=17%  Similarity=0.048  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY  235 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~  235 (271)
                      .+....++..+...|+.++|++.++.+.+..   + ....+...++.++..+|+|++|++ +++..+.+  |.+...++.
T Consensus       271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~  344 (388)
T d1w3ba_         271 PDAYCNLANALKEKGSVAEAEDCYNTALRLC---P-THADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSN  344 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC---C-ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence            4456667777778888888888887776532   2 233566778888999999999999 77777666  899888999


Q ss_pred             HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          236 KAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       236 k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|.+|.-+|+ +||.++|++-.++-|
T Consensus       345 la~~~~~~g~~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         345 LASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999 999999999888876

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.3e-05  Score=64.11  Aligned_cols=93  Identities=14%  Similarity=0.091  Sum_probs=80.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIY  240 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY  240 (271)
                      .+|.....+|++++|.+.++++++.   +|+. .++...++.++..+|+|++|+. ++...+.+  |.+...+...|.+|
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~---~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~   77 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQ---EPDN-TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVY   77 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHh
Confidence            3677888999999999999999864   4432 3567789999999999999999 77777777  89999999999999


Q ss_pred             HhhCh-HHHHHHHHHHHhhcC
Q 024174          241 TMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       241 tmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-+++ +||.++|++..+..+
T Consensus        78 ~~~g~~~~A~~~~~~~~~~~~   98 (388)
T d1w3ba_          78 KERGQLQEAIEHYRHALRLKP   98 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT
T ss_pred             hhhcccccccccccccccccc
Confidence            99999 999999999988766

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=6.1e-05  Score=60.77  Aligned_cols=103  Identities=17%  Similarity=0.097  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCccc------------------chHHHHHHHHHHhcchHHHhh-
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAY------------------NVEMALVEILIYQGKYREALE-  216 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeay------------------nirmllvEilI~qGk~~EAL~-  216 (271)
                      .|..+...+..+...|+.++|.+.+..|++.++.+.-...                  +.-..+++.+..+|+|++|+. 
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            4677889999999999999999999999988775521111                  233557889999999999999 


Q ss_pred             hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          217 CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       217 ~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |+.+...+  |.|.+.+...+.+|.-+|+ +||.++|+++++...
T Consensus        90 ~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          90 LEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            77888888  9999999999999999999 999999999988754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=8.4e-05  Score=60.39  Aligned_cols=94  Identities=13%  Similarity=0.117  Sum_probs=80.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIY  240 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY  240 (271)
                      ..++.+...|+.++|.+.++++++   .+|+. ...-..++.++..+|++++|+. +++..+.+  |.+...++..|.+|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~   97 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQ---QDPKH-MEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSF   97 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH---SCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH---hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHhhhccc--cccccccccccccc
Confidence            568889999999999999999985   45543 3345667899999999999999 66777666  89999999999999


Q ss_pred             HhhCh-HHHHHHHHHHHhhcCC
Q 024174          241 TMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       241 tmL~k-~EA~k~we~f~~lv~~  261 (271)
                      .-+++ ++|.+.+++.....|.
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~~~  119 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYTPA  119 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTT
T ss_pred             cccccccccccchhhHHHhccc
Confidence            99999 9999999999988873

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00017  Score=53.98  Aligned_cols=96  Identities=13%  Similarity=0.090  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-------C
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD-------G  230 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D-------~  230 (271)
                      +.+..-..+...|++++|++..+++++.   +|+. ..+-.-++.+++.+|+|++|+. |.+.++-+  |++       +
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~---~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--~~~~~~~~~~a   79 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIA   79 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cccc-HHHHHhHHHHHHHcCchHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence            4667778899999999999999999975   3432 3355667999999999999999 77644433  333       3


Q ss_pred             CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |.|.-.|.+|.-++. ++|.++|++...+-+
T Consensus        80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            456667788888888 999999998876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.45  E-value=0.00023  Score=54.51  Aligned_cols=103  Identities=17%  Similarity=0.127  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCccc--------chHHHHHHHHHHhcchHHHhh-hhh---hcccCC
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAY--------NVEMALVEILIYQGKYREALE-CNC---LKDEQR  225 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeay--------nirmllvEilI~qGk~~EAL~-~~~---L~~e~~  225 (271)
                      ..+.+.+......|++++|++..++|++.+.+.++...        ..---++..+.-.|+|++|++ |++   +..+..
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            34566688888999999999999999999887653211        111236777888999999999 664   222210


Q ss_pred             --CCC----CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          226 --IPS----DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       226 --~p~----D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                        -+.    ..+.+.-.|.+|.-+++ +||.++|++-.++.|
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence              011    12234556999999999 999999999999987

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=0.00032  Score=58.11  Aligned_cols=102  Identities=11%  Similarity=-0.025  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHh-cCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC--
Q 024174          157 VNAIKAEAVKQMK-YGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG--  230 (271)
Q Consensus       157 v~~lk~~A~~L~k-Sgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~--  230 (271)
                      ...+..++..+.. .|++++|++.+++|.+.+.++...  .-.+-.-+++++..+|+|++|++ |+++....  +.+.  
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~--~~~~~~  194 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS--MGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--SSCTTT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC--ccchhh
Confidence            3446666665644 599999999999999988776433  34455567999999999999999 77766554  3332  


Q ss_pred             -----CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          231 -----RFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       231 -----R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                           +.++..+++|-..++ ++|.+.++++.++.|
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence                 224566777777788 999999999988876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=5.8e-05  Score=59.11  Aligned_cols=105  Identities=12%  Similarity=0.044  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhccc----CCCCCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDE----QRIPSDGR  231 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e----~~~p~D~R  231 (271)
                      .......+..+...|+.++|.+.++.+.+....++.........++.+++.+|++++|.. ++...+.    +..|...+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  292 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR  292 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence            444566777888899999999999988876555555666677889999999999999999 5544321    11245567


Q ss_pred             chhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          232 FPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                      .++..|.+|.-+|+ +||.+.+++-.++...
T Consensus       293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            88999999999999 9999999987776543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00071  Score=53.87  Aligned_cols=93  Identities=12%  Similarity=0.045  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      .|-..++.....|++++|++..++    + .++..  .+-.-++.++..+|+|++|+. |+.-.+-+  |.+...|.-.|
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~----i-~~~~~--~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g   77 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSA----V-QDPHS--RICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRG   77 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT----S-SSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHh----c-CCCCH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHH
Confidence            456788999999999999877653    2 12222  233457888999999999999 77666666  89999999999


Q ss_pred             HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          238 IIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       238 IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ++|..+++ +||.+.|++=.+..+
T Consensus        78 ~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          78 MLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHhhccHHHHHHHHHHHHHhCc
Confidence            99999999 999999988655544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.0011  Score=56.36  Aligned_cols=97  Identities=10%  Similarity=0.072  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhc-chHHHhh-hhhhcccCCCCCCCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQG-KYREALE-CNCLKDEQRIPSDGR  231 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qG-k~~EAL~-~~~L~~e~~~p~D~R  231 (271)
                      ..++.--++..+.+.++.++|++..++|++.   +|  ..+++.   .+.++...| +++||++ ++...+.+  |+.+.
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l---nP~~~~a~~~---r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~  113 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHF---RRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQ  113 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHH---HHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH---CCCChHHHHH---HHHHHHHhCcCHHHHHHHHHHHHHHH--Hhhhh
Confidence            3444445567788888999999999999863   33  234433   334444444 4888888 66666666  88888


Q ss_pred             chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          232 FPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+...|.+|..+++ +||-+.+++-.++-|
T Consensus       114 a~~~~~~~~~~l~~~~eAl~~~~kal~~dp  143 (315)
T d2h6fa1         114 VWHHRRVLVEWLRDPSQELEFIADILNQDA  143 (315)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHhHHHHhhccHHHHHHHHhhhhhhhh
Confidence            88888888888888 888888888887776

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.0017  Score=50.61  Aligned_cols=96  Identities=13%  Similarity=0.083  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +......++..+...|+.++|++.++++++...+.    .+...-++.++..+|++++|++ ++...+.+  |.|....+
T Consensus        70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~  143 (259)
T d1xnfa_          70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSL  143 (259)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh----hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHH
Confidence            45678889999999999999999999999753322    2356677888999999999999 77777776  89988888


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHh
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAE  257 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~  257 (271)
                      +-++.+.-++. +.+....+.+..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_         144 WLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhc
Confidence            89999999888 544444444333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0003  Score=51.77  Aligned_cols=58  Identities=10%  Similarity=-0.016  Sum_probs=53.6

Q ss_pred             HHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          201 LVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       201 lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -+..++.+|+|+||+. |.+..+.+  |.|+..+...|.+|..+++ ++|.+.|++..++-|
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p   68 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP   68 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhcc
Confidence            4778899999999999 77877777  9999999999999999999 999999999999877

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00048  Score=52.21  Aligned_cols=94  Identities=13%  Similarity=0.067  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH---hcchHHHhh-hhhhcccCCCCCCCC--chh
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY---QGKYREALE-CNCLKDEQRIPSDGR--FPF  234 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~---qGk~~EAL~-~~~L~~e~~~p~D~R--~~L  234 (271)
                      ..++..+...++.++|.+.-++|++..   | .--+++.-++..|+.   .|++++|.. ++++...+  |.+.+  .+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~---p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~--~~~~~~~~~~   76 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG---S-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVF   76 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS---C-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC---C-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc--CCchHHHHHH
Confidence            345666677778888887777776532   2 233455667777775   577888999 77777655  55544  567


Q ss_pred             HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .-|++|.-+|+ ++|.++|++-.++-|
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhCc
Confidence            78999999999 999999999999877

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.78  E-value=0.00073  Score=49.35  Aligned_cols=61  Identities=8%  Similarity=-0.157  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      -+.++..+.-+|+|++|.. +++.+..+  |.+...+...|.+|..+++ ++|.+++++-.++-|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p   81 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP   81 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccccc
Confidence            3566788999999999999 77888888  9999999999999999999 999999999999888

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0014  Score=55.50  Aligned_cols=99  Identities=8%  Similarity=0.065  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174          156 DVNAIKAEAVKQMKYGK-PEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP  233 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk-~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~  233 (271)
                      +.......+.-|...|+ .++|++.++++++.-   | .-+.+-..++.++..+|+++||+. +....+.+  |+++..+
T Consensus        76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~---p-~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d--p~n~~a~  149 (315)
T d2h6fa1          76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---P-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAW  149 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---T-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHH
T ss_pred             ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH---H-hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh--hcchHHH
Confidence            34445555666666664 789998888887643   2 223344455677778899999999 77777677  8999999


Q ss_pred             hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          234 FYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       234 L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ...|.+|..+++ ++|.+++++-.++-|
T Consensus       150 ~~~~~~~~~~~~~~~Al~~~~~al~~~p  177 (315)
T d2h6fa1         150 QHRQWVIQEFKLWDNELQYVDQLLKEDV  177 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHCC
Confidence            999999999999 999999999988877

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0027  Score=45.22  Aligned_cols=80  Identities=11%  Similarity=-0.007  Sum_probs=59.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccc---hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYN---VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA  237 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeayn---irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~  237 (271)
                      .+.....+.|++++|++.+++|++...+++....+   +=--|+..+..+|+|++|+. |++..+-+  |.+.+..-=.+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~a~~Nl~   87 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence            55777889999999999999999887765433222   23347888888999999999 77777777  88866554445


Q ss_pred             HHHHhh
Q 024174          238 IIYTML  243 (271)
Q Consensus       238 IIYtmL  243 (271)
                      .+..+|
T Consensus        88 ~~~~~l   93 (95)
T d1tjca_          88 YFEYIM   93 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0037  Score=47.17  Aligned_cols=99  Identities=13%  Similarity=0.056  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      +....-..+..++..|+.++|.+.++++++.   +|+.. ..-..++.+++.+|+|++|++ +++...-+  |.|.+...
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~-~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~--p~~~~~~~  116 (159)
T d1a17a_          43 NAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYI-KGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKM  116 (159)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred             hhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHH
Confidence            4566788999999999999999999999964   33322 334678899999999999999 66666556  88877766


Q ss_pred             HHHHHHHhhCh---HHHHHHHHHHHhhcC
Q 024174          235 YKAIIYTMLNM---EEAKKWWEEFAETID  260 (271)
Q Consensus       235 ~k~IIYtmL~k---~EA~k~we~f~~lv~  260 (271)
                      .-+.++.++++   ++|-..-+..+..++
T Consensus       117 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~  145 (159)
T d1a17a_         117 KYQECNKIVKQKAFERAIAGDEHKRSVVD  145 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHHhhh
Confidence            66666666555   445544455554444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0012  Score=49.96  Aligned_cols=59  Identities=19%  Similarity=0.085  Sum_probs=53.0

Q ss_pred             HHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ..+..++-+|+|++|++ |+...+.+  |.+...+...|.+|.-+++ ++|.+++++-.++-|
T Consensus         9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p   69 (201)
T d2c2la1           9 EQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG   69 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence            45778889999999999 77877777  9999999999999999999 999999999888777

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0071  Score=46.81  Aligned_cols=91  Identities=12%  Similarity=0.010  Sum_probs=65.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIY  240 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY  240 (271)
                      ..|...++-|++++|++.++++++.   +|.. ...-..++.++..+|+|++|+. |+...+-+  |.|....-.-+.++
T Consensus        67 nla~~y~k~~~~~~A~~~~~~al~~---~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          67 NLAMCHLKLQAFSAAIESCNKALEL---DSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccccchhhhhhhc---cccc-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence            4678888999999999999999965   4432 2234567889999999999999 77766666  88866665666677


Q ss_pred             HhhCh-HHHH-HHHHH-HHhh
Q 024174          241 TMLNM-EEAK-KWWEE-FAET  258 (271)
Q Consensus       241 tmL~k-~EA~-k~we~-f~~l  258 (271)
                      ..+.+ .+.+ +.|++ |.++
T Consensus       141 ~~~~~~~~~e~~~~~~~f~~~  161 (170)
T d1p5qa1         141 QRIRRQLAREKKLYANMFERL  161 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            77766 4333 33555 4443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.01  Score=45.91  Aligned_cols=108  Identities=18%  Similarity=0.092  Sum_probs=80.8

Q ss_pred             hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhh---hcccCCC-
Q 024174          154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQRI-  226 (271)
Q Consensus       154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~~~-  226 (271)
                      ...+..+..++..+...|+.++|++.++.+++.....+  .........++.++..+|++++|.. +..   +..+... 
T Consensus        48 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~  127 (366)
T d1hz4a_          48 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE  127 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence            34466677888999999999999999999998877653  3444556778888889999999998 443   2222211 


Q ss_pred             --CCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          227 --PSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       227 --p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                        +.-++.+...|.+|.-++. ++|..++++.....+.
T Consensus       128 ~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_         128 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             hhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence              1123456677899999999 9999999998887764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0017  Score=48.18  Aligned_cols=59  Identities=15%  Similarity=0.147  Sum_probs=52.1

Q ss_pred             HHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .++..+..+|+|++|++ |++..+-+  |.|...+...|.+|..+++ ++|.+++++-.++.|
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~   69 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc
Confidence            35667888999999999 66777777  9999999999999999999 999999999888766

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0083  Score=49.26  Aligned_cols=105  Identities=14%  Similarity=0.042  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHH-hcchHHHhh-hhh---hcccCCCCCC
Q 024174          157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIY-QGKYREALE-CNC---LKDEQRIPSD  229 (271)
Q Consensus       157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~-qGk~~EAL~-~~~---L~~e~~~p~D  229 (271)
                      ...+...+....+.|+.++|++.++++++.+.+..  ..+..+-..+++++-. .|+|++|+. |+.   +..++..+.+
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~  156 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            45578888889999999999999999999987753  4555666677787766 499999999 654   3322211111


Q ss_pred             -CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          230 -GRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       230 -~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                       .+.++-.|-+|..+++ +||.+.|++-.+..+.
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~  190 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence             3335556999999999 9999999998777653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.77  E-value=0.012  Score=44.77  Aligned_cols=88  Identities=11%  Similarity=0.049  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF  234 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L  234 (271)
                      .+......|....+.|++++|+...+.|++.   +|.- ...-..++.+++..|+|++|+. ++...+-+  |.|....-
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---~p~~-~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~  149 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQA  149 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhh---hhhh-hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence            4555677889999999999999999999864   3321 2345678888999999999999 67555555  66654444


Q ss_pred             HHHHHHHhhCh-HHHH
Q 024174          235 YKAIIYTMLNM-EEAK  249 (271)
Q Consensus       235 ~k~IIYtmL~k-~EA~  249 (271)
                      .-+.++..+.+ .|++
T Consensus       150 ~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         150 ELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            44555555555 4443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.68  E-value=0.03  Score=42.76  Aligned_cols=94  Identities=10%  Similarity=0.008  Sum_probs=67.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH
Q 024174          161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII  239 (271)
Q Consensus       161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II  239 (271)
                      -..|..+.+.|++++|++..+.+++.   +|.. ...-..++.++..+|+|++|.. |+...+-+  |.+......-+.+
T Consensus        68 ~Nla~~~~~l~~~~~Ai~~~~~al~l---~p~~-~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~  141 (168)
T d1kt1a1          68 LNLAMCYLKLREYTKAVECCDKALGL---DSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHH
T ss_pred             HhHHHHHHHhhhcccchhhhhhhhhc---ccch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence            34788889999999999999999975   3321 2334456788999999999999 77766666  8887776677778


Q ss_pred             HHhhCh-H--HHHHHHHHHHhhcC
Q 024174          240 YTMLNM-E--EAKKWWEEFAETID  260 (271)
Q Consensus       240 YtmL~k-~--EA~k~we~f~~lv~  260 (271)
                      ...+++ .  +.+.+..-|+++-.
T Consensus       142 ~~~~~~~~e~~kk~~~~~f~~~~~  165 (168)
T d1kt1a1         142 QKKAKEHNERDRRTYANMFKKFAE  165 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHHHHHHHHHhhhhh
Confidence            877776 2  33334444555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.63  E-value=0.0064  Score=51.65  Aligned_cols=92  Identities=13%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             HHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC--------------------
Q 024174          166 KQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ--------------------  224 (271)
Q Consensus       166 ~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~--------------------  224 (271)
                      .+...|+.++|++.++++++   .+|. ....+..++++|+.+|+|++|++ ++...+.+                    
T Consensus         5 ~aL~~G~l~eAl~~l~~al~---~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIK---ASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH---TCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH---HCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence            45567788888888887774   2332 34567778888888888888877 55333222                    


Q ss_pred             -------------CCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174          225 -------------RIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD  261 (271)
Q Consensus       225 -------------~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~  261 (271)
                                   ..|.+....+.++.++--.+. ++|....++-.++.|.
T Consensus        81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence                         012333445677777777788 8888888888887774

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.48  E-value=0.0059  Score=46.55  Aligned_cols=88  Identities=11%  Similarity=0.040  Sum_probs=63.1

Q ss_pred             CChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHH------HhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhh
Q 024174          171 GKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILI------YQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTML  243 (271)
Q Consensus       171 gk~deave~Le~A~eka~~e~eeaynirmllvEilI------~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL  243 (271)
                      +..++|.+..++|++.--++++.-++....+.++--      ..+.+++|.+ |++-..-+  |.+...+..-|++|.-+
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHHHHHc
Confidence            347888888888886544444444455544444322      2466889999 77777777  99999999999999876


Q ss_pred             C-----------h-HHHHHHHHHHHhhcC
Q 024174          244 N-----------M-EEAKKWWEEFAETID  260 (271)
Q Consensus       244 ~-----------k-~EA~k~we~f~~lv~  260 (271)
                      +           . ++|.++|++-.++-|
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            4           3 778888888777777

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.009  Score=44.86  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHhcCChh---HHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174          156 DVNAIKAEAVKQMKYGKPE---FAVTLLKKVYEDCKNEPEPA-YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~d---eave~Le~A~eka~~e~eea-ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      +++..-..|.-|.+++..+   +|+++|+++++   .++.+. .+.-..++..+...|+|++|++ ++...+.+  |.+.
T Consensus        32 ~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~---~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~--P~~~  106 (122)
T d1nzna_          32 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP---KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--PQNN  106 (122)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC--cCCH
Confidence            4566778899998876654   68999888774   344333 2455678888999999999999 66777777  8887


Q ss_pred             CchhHHHHHHHhh
Q 024174          231 RFPFYKAIIYTML  243 (271)
Q Consensus       231 R~~L~k~IIYtmL  243 (271)
                      +..--++.|..-+
T Consensus       107 ~A~~l~~~I~~~~  119 (122)
T d1nzna_         107 QAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7666666665433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.40  E-value=0.0018  Score=53.56  Aligned_cols=77  Identities=10%  Similarity=-0.031  Sum_probs=59.9

Q ss_pred             hcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-H
Q 024174          169 KYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-E  246 (271)
Q Consensus       169 kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~  246 (271)
                      ..+..++|++.++++++.   ++.........++.++..+|++++|++ ++.+...+  |+|...+.+.|++|.-+++ +
T Consensus       121 ~~~~~~~a~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCC
T ss_pred             ccccHHHHHHHHHHHHhh---CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHH
Confidence            344578999999999874   443333334456778888999999999 67888888  9999999999999999988 7


Q ss_pred             HHHH
Q 024174          247 EAKK  250 (271)
Q Consensus       247 EA~k  250 (271)
                      +|.+
T Consensus       196 ~A~~  199 (334)
T d1dcea1         196 DSGP  199 (334)
T ss_dssp             CSSS
T ss_pred             HHHH
Confidence            6643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.036  Score=43.56  Aligned_cols=98  Identities=7%  Similarity=-0.056  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhccc---CC------CCC
Q 024174          159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDE---QR------IPS  228 (271)
Q Consensus       159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e---~~------~p~  228 (271)
                      ..-+++....+.|++++|++..++|++.   +|+. ...-..++.++..+|+|++|++ |+.-...   +.      .-.
T Consensus        38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~-~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~  113 (192)
T d1hh8a_          38 ICFNIGCMYTILKNMTEAEKAFTRSINR---DKHL-AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL  113 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhh-hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence            4667899999999999999999999964   3322 1233346777888999999998 6643221   10      000


Q ss_pred             CCCc-----hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          229 DGRF-----PFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       229 D~R~-----~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .+..     +.-.|++|.-++. ++|.+.+++-.++-+
T Consensus       114 ~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_         114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            1122     2235999999999 999999988776655

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.013  Score=52.71  Aligned_cols=93  Identities=12%  Similarity=-0.034  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      .........+.|+.++|.+..+++....      .+..-.-++.++.++|+|++|.. |+.-.+.+  |.++++|.--|+
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~  194 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYI------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAI  194 (497)
T ss_dssp             --------------------CCHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHH
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHH
Confidence            3444555566667777766666655432      13456678999999999999999 77777777  999999999999


Q ss_pred             HHHhhCh-HHHHHHHHHHHhhcC
Q 024174          239 IYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       239 IYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      ||.-.++ .+|-.++.+=..+.+
T Consensus       195 ~~~~~~~~~~A~~~y~ral~~~~  217 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCC
Confidence            9999999 999999887665554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=93.64  E-value=0.024  Score=47.91  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=51.3

Q ss_pred             HHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          203 EILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       203 EilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      |-++-+|++++|+. +++.++.+  |.|...+..-|.+|-..|+ ++|.+++++..++-|
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P   61 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP   61 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            44567899999999 88888888  9999999999999999999 999999999999877

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.55  E-value=0.45  Score=38.64  Aligned_cols=96  Identities=11%  Similarity=-0.033  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174          160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI  238 (271)
Q Consensus       160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I  238 (271)
                      ....|..+...|+.++|...++++++   ..+.....+-+..+++..-+|++++|.. ++...+..  |.+...+...|.
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~---~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~  176 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAAL  176 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHH---HhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence            34556777888999999998888874   3455555677888888889999999998 66655555  788888888887


Q ss_pred             H-HHhhCh-HHHHHHHHHHHhhcC
Q 024174          239 I-YTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       239 I-YtmL~k-~EA~k~we~f~~lv~  260 (271)
                      + |...+. +.|.+.|+.-.+..|
T Consensus       177 ~e~~~~~~~~~a~~i~e~~l~~~p  200 (308)
T d2onda1         177 MEYYCSKDKSVAFKIFELGLKKYG  200 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccCHHHHHHHHHHHHHhhh
Confidence            6 445555 889999998888776

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.36  E-value=0.24  Score=38.87  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhh----ccc-CCCCCC
Q 024174          156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCL----KDE-QRIPSD  229 (271)
Q Consensus       156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L----~~e-~~~p~D  229 (271)
                      .+..+..++..+...|.+++|++.++.+++   -+|..+ .+-..++..+...|++.||+. |.++    .++ ..-|..
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~---~~P~~e-~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTF---EHPYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHH---hCCccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            456788899999999999999999999985   456544 456677889999999999999 7753    222 222665


Q ss_pred             CCchhHHHHHHH
Q 024174          230 GRFPFYKAIIYT  241 (271)
Q Consensus       230 ~R~~L~k~IIYt  241 (271)
                      .=.-||+.|+..
T Consensus       142 ~l~~l~~~il~~  153 (179)
T d2ff4a2         142 TLRALNERILRQ  153 (179)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            544566666543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.98  E-value=0.33  Score=39.42  Aligned_cols=88  Identities=13%  Similarity=0.133  Sum_probs=55.7

Q ss_pred             HhcCCh-hHHHHHHHHHHHHhhcCCC--cccchHHHHHHHH-------HHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174          168 MKYGKP-EFAVTLLKKVYEDCKNEPE--PAYNVEMALVEIL-------IYQGKYREALE-CNCLKDEQRIPSDGRFPFYK  236 (271)
Q Consensus       168 ~kSgk~-deave~Le~A~eka~~e~e--eaynirmllvEil-------I~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k  236 (271)
                      ...++. ++|++..+++++   .+|+  ++++.+-.+.+-+       ...|.+++|+. +++....+  |++...+...
T Consensus        39 ~~~~~~~~~al~~~~~~l~---~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~  113 (334)
T d1dcea1          39 RQAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHR  113 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHh
Confidence            333443 678777777775   3343  3444433333322       22466888888 66666666  8888888888


Q ss_pred             HHHHHhhCh---HHHHHHHHHHHhhcC
Q 024174          237 AIIYTMLNM---EEAKKWWEEFAETID  260 (271)
Q Consensus       237 ~IIYtmL~k---~EA~k~we~f~~lv~  260 (271)
                      |.++.-+++   +||-.++++--++-|
T Consensus       114 ~~~~~~~~~~~~~~a~~~~~~al~~~~  140 (334)
T d1dcea1         114 CWLLSRLPEPNWARELELCARFLEADE  140 (334)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHhccccHHHHHHHHHHHHhhCc
Confidence            888877775   678788877766655

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.59  E-value=0.2  Score=38.97  Aligned_cols=85  Identities=15%  Similarity=0.031  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHhh-cCCCcccchHHHHHHHHH-HhcchHHHhh-hhhhcccCCCCCCCCchh-HHHHHHHhhCh-HHH
Q 024174          174 EFAVTLLKKVYEDCK-NEPEPAYNVEMALVEILI-YQGKYREALE-CNCLKDEQRIPSDGRFPF-YKAIIYTMLNM-EEA  248 (271)
Q Consensus       174 deave~Le~A~eka~-~e~eeaynirmllvEilI-~qGk~~EAL~-~~~L~~e~~~p~D~R~~L-~k~IIYtmL~k-~EA  248 (271)
                      .+-++.|++++++.. ..++..-.|+.+.+=++- ..++.++|.. .+++.+.+  |.|.|=+| |=|+.|.=|+. ++|
T Consensus        15 ~~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A   92 (124)
T d2pqrb1          15 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMA   92 (124)
T ss_dssp             HHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHH
Confidence            455677787777653 235555556665554443 3577888988 66777777  77777565 67899999999 999


Q ss_pred             HHHHHHHHhhcC
Q 024174          249 KKWWEEFAETID  260 (271)
Q Consensus       249 ~k~we~f~~lv~  260 (271)
                      .+++++.-+.-|
T Consensus        93 ~~~~~~~L~ieP  104 (124)
T d2pqrb1          93 KRYVDTLFEHER  104 (124)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHccCC
Confidence            999999888777

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.55  E-value=0.74  Score=34.03  Aligned_cols=67  Identities=12%  Similarity=-0.067  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC----Ccccch---HHHHHHHHHHhcchHHHhh-hhh---hcccC
Q 024174          158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP----EPAYNV---EMALVEILIYQGKYREALE-CNC---LKDEQ  224 (271)
Q Consensus       158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~----eeayni---rmllvEilI~qGk~~EAL~-~~~---L~~e~  224 (271)
                      ......+..+.+.|++++|++..+++++.+.+..    +.....   -.-++.++...|+|+||+. |++   |..+.
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            3466788889999999999999999998876532    222222   2236788899999999999 664   55544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.41  E-value=1.3  Score=35.77  Aligned_cols=90  Identities=6%  Similarity=-0.018  Sum_probs=64.5

Q ss_pred             HHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHH--Hhh
Q 024174          167 QMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIY--TML  243 (271)
Q Consensus       167 L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY--tmL  243 (271)
                      ....|..+.|.+.++.+++..-.+    .++-+..+++++.+|++++|.. |++.......+.+..-.+|+.-+.  ...
T Consensus       179 ~~~~~~~~~a~~i~e~~l~~~p~~----~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~  254 (308)
T d2onda1         179 YYCSKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  254 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence            345688899999999998764222    4677888999999999999998 776544431122233456665443  355


Q ss_pred             Ch-HHHHHHHHHHHhhcC
Q 024174          244 NM-EEAKKWWEEFAETID  260 (271)
Q Consensus       244 ~k-~EA~k~we~f~~lv~  260 (271)
                      |. +.+.+..++..+++|
T Consensus       255 G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         255 GDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             SCHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHCc
Confidence            77 899999999999998

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.71  E-value=0.28  Score=34.11  Aligned_cols=61  Identities=11%  Similarity=-0.052  Sum_probs=45.7

Q ss_pred             HHHHHHHHhcchHHHhh-hhh---hcccC--CCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174          200 ALVEILIYQGKYREALE-CNC---LKDEQ--RIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID  260 (271)
Q Consensus       200 llvEilI~qGk~~EAL~-~~~---L~~e~--~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~  260 (271)
                      .|+.++.-+|+|++|.. +++   +..++  ..+.....+-.-|.+|.-+++ ++|.+.+++-.++-|
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P   77 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence            46778888999999999 654   32222  112223446678999999999 999999999999988

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.08  E-value=0.4  Score=35.77  Aligned_cols=62  Identities=19%  Similarity=0.050  Sum_probs=47.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC
Q 024174          162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD  229 (271)
Q Consensus       162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D  229 (271)
                      ..|.-+.+.|++++|++..+.|++.   +|... ..-..++.++..+|+|++|+. ++...+-+  |.|
T Consensus        72 Nla~~~~~l~~~~~Al~~~~~al~~---~p~~~-ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n  134 (153)
T d2fbna1          72 NLATCYNKNKDYPKAIDHASKVLKI---DKNNV-KALYKLGVANMYFGFLEEAKENLYKAASLN--PNN  134 (153)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH---STTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTC
T ss_pred             hHHHHHHHhcccchhhhhhhccccc---cchhh-hhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence            4677788899999999999999864   44332 355678889999999999999 66655555  665

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.09  E-value=0.69  Score=35.81  Aligned_cols=65  Identities=15%  Similarity=0.127  Sum_probs=46.5

Q ss_pred             HHHHHHHHhcCCh---hHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174          161 KAEAVKQMKYGKP---EFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG  230 (271)
Q Consensus       161 k~~A~~L~kSgk~---deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~  230 (271)
                      =.-|.-|.+|...   ++++++|++.++   .+++.-|+---.|+=.+...|+|++|++ ++.+.+.+  |.+.
T Consensus        39 F~YAw~Lv~S~~~~d~~~gI~lLe~~~~---~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie--P~n~  107 (124)
T d2pqrb1          39 FNYAWGLIKSTDVNDERLGVKILTDIYK---EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNNK  107 (124)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC--CCcH
Confidence            3456677777544   589999998774   4666556666666667888999999999 66677666  6553