Citrus Sinensis ID: 024195

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
ccccEEEEEEccccEEEEEEccccccccccccEEEccccccccccEEccEEEEcccccccccccccEEEEcEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHHccc
cccEEEEEEEccccEEEEEEcccccccccccccEEcccHHHHHHcEEEEEEEEEcccccEEEcccEEEEEEEEEEEEEccccHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHHccccc
mgqalgciqvdqSTVAIKETfgkfddvlepgchclpwclgsqvagqlSLRVQQLDvrcetktkdnvFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRasvpkldldatfEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLafsenvpgtsskdvMDMVLVTQYFDTMKeigassktnsvfiphgpgavKDIASQIREGLLQANATT
mgqalgciqvdqSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVrcetktkdnvfvNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFsenvpgtsskdvmDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
****LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGAS**TNSVFIPHG***V******************
***ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR*****************GE****Y****G***Q*QAIVDGLRDSV****************DMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQI****L******
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
*GQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query271 2.2.26 [Sep-21-2011]
Q9CAR7286 Hypersensitive-induced re yes no 0.992 0.940 0.865 1e-143
Q9FM19286 Hypersensitive-induced re no no 1.0 0.947 0.831 1e-137
Q9SRH6285 Hypersensitive-induced re no no 0.988 0.940 0.716 1e-118
Q9FHM7292 Hypersensitive-induced re no no 0.974 0.904 0.560 4e-90
P16148184 Protein PPLZ12 OS=Lupinus N/A no 0.575 0.847 0.588 4e-54
P72655321 Uncharacterized protein s N/A no 0.885 0.747 0.235 1e-08
P0DKS0313 Protein QmcA OS=Wiggleswo yes no 0.837 0.725 0.223 2e-08
P0AA56305 Protein QmcA OS=Shigella yes no 0.811 0.721 0.242 2e-07
P0AA53305 Protein QmcA OS=Escherich N/A no 0.811 0.721 0.242 2e-07
P0AA54305 Protein QmcA OS=Escherich yes no 0.811 0.721 0.242 2e-07
>sp|Q9CAR7|HIR2_ARATH Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1 Back     alignment and function desciption
 Score =  508 bits (1307), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/283 (86%), Positives = 258/283 (91%), Gaps = 14/283 (4%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEK------------ 168
           KNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMNEINA              
Sbjct: 121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEA 180

Query: 169 --ILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 226
             ILQIKRAEGEAESKYL+G+GIARQRQAIVDGLR+SVLAFSE+VPGTSSKDVMDMVLVT
Sbjct: 181 EKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVT 240

Query: 227 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 269
           QYFDT+KEIGASSK+NSVFIPHGPGAV+DIASQIR+GLLQ N+
Sbjct: 241 QYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNS 283

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SRH6|HIR3_ARATH Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1 Back     alignment and function description
>sp|P16148|PLZ12_LUPPO Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1 Back     alignment and function description
>sp|P72655|Y1128_SYNY3 Uncharacterized protein slr1128 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1128 PE=3 SV=1 Back     alignment and function description
>sp|P0DKS0|QMCA_WIGBR Protein QmcA OS=Wigglesworthia glossinidia brevipalpis GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1 Back     alignment and function description
>sp|P0AA54|QMCA_ECOL6 Protein QmcA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qmcA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
255558218285 Protein PPLZ12, putative [Ricinus commun 0.996 0.947 0.887 1e-146
449458019284 PREDICTED: hypersensitive-induced respon 0.996 0.950 0.880 1e-145
297841721286 band 7 family protein [Arabidopsis lyrat 0.992 0.940 0.869 1e-142
15222481286 Hypersensitive-induced response protein 0.992 0.940 0.865 1e-141
222423911286 AT1G69840 [Arabidopsis thaliana] 0.992 0.940 0.869 1e-140
356500513286 PREDICTED: hypersensitive-induced respon 0.996 0.944 0.841 1e-140
225424906286 PREDICTED: hypersensitive-induced respon 0.985 0.933 0.864 1e-138
296086429 373 unnamed protein product [Vitis vinifera] 0.985 0.715 0.864 1e-138
115476296284 Os08g0398400 [Oryza sativa Japonica Grou 0.985 0.940 0.857 1e-138
14150732284 hypersensitive-induced response protein 0.985 0.940 0.857 1e-138
>gi|255558218|ref|XP_002520136.1| Protein PPLZ12, putative [Ricinus communis] gi|223540628|gb|EEF42191.1| Protein PPLZ12, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/284 (88%), Positives = 266/284 (93%), Gaps = 14/284 (4%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGC+QVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQ+AG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCVQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQLAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKA+DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+ FEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKAADAFYKLSNTRAQIQAYVFDVIRASVPKLDLDSAFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN--------------A 166
           KNDIAKAVE ELEKAMSHYG+EIVQTLIVDIEPDEHVKRAMNEIN              A
Sbjct: 121 KNDIAKAVENELEKAMSHYGFEIVQTLIVDIEPDEHVKRAMNEINAAARMRVAASEKAEA 180

Query: 167 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 226
           EKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT
Sbjct: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 240

Query: 227 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANAT 270
           QYFDTMKEIGASSK++SVFIPHGPGAV+DIA+QIR+GLLQAN+T
Sbjct: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVRDIATQIRDGLLQANST 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458019|ref|XP_004146745.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449458021|ref|XP_004146746.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|449520329|ref|XP_004167186.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449520331|ref|XP_004167187.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|34484310|gb|AAQ72788.1| hypersensitive-induced response protein [Cucumis sativus] Back     alignment and taxonomy information
>gi|297841721|ref|XP_002888742.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297334583|gb|EFH65001.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222481|ref|NP_177142.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|30697929|ref|NP_849870.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|42572051|ref|NP_974116.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|42572053|ref|NP_974117.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|145327201|ref|NP_001077802.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|145327203|ref|NP_001077803.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|334183794|ref|NP_001185358.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|75271990|sp|Q9CAR7.1|HIR2_ARATH RecName: Full=Hypersensitive-induced response protein 2; Short=AtHIR2 gi|12325226|gb|AAG52556.1|AC010675_4 unknown protein; 58197-59415 [Arabidopsis thaliana] gi|20466748|gb|AAM20691.1| unknown protein [Arabidopsis thaliana] gi|23198256|gb|AAN15655.1| unknown protein [Arabidopsis thaliana] gi|332196863|gb|AEE34984.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196864|gb|AEE34985.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196865|gb|AEE34986.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196866|gb|AEE34987.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196867|gb|AEE34988.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196868|gb|AEE34989.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] gi|332196869|gb|AEE34990.1| Hypersensitive-induced response protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222423911|dbj|BAH19919.1| AT1G69840 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356500513|ref|XP_003519076.1| PREDICTED: hypersensitive-induced response protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225424906|ref|XP_002276517.1| PREDICTED: hypersensitive-induced response protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086429|emb|CBI32018.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115476296|ref|NP_001061744.1| Os08g0398400 [Oryza sativa Japonica Group] gi|37805955|dbj|BAC99370.1| hypersensitive-induced response protein [Oryza sativa Japonica Group] gi|37806020|dbj|BAC99432.1| hypersensitive-induced response protein [Oryza sativa Japonica Group] gi|113623713|dbj|BAF23658.1| Os08g0398400 [Oryza sativa Japonica Group] gi|215694568|dbj|BAG89561.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640506|gb|EEE68638.1| hypothetical protein OsJ_27208 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|14150732|gb|AAK54610.1|AF374475_1 hypersensitive-induced response protein [Oryza sativa] gi|125561455|gb|EAZ06903.1| hypothetical protein OsI_29142 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
TAIR|locus:2196749286 AT1G69840 [Arabidopsis thalian 0.992 0.940 0.872 2.6e-125
TAIR|locus:2170698286 HIR1 "HYPERSENSITIVE-INDUCED R 0.992 0.940 0.837 3.7e-119
TAIR|locus:2100242285 HIR2 "hypersensitive induced r 0.988 0.940 0.716 1.6e-102
TAIR|locus:2153117292 AT5G51570 [Arabidopsis thalian 0.974 0.904 0.560 6e-80
UNIPROTKB|Q5LQ79296 SPO2617 "SPFH domain/band 7 fa 0.608 0.557 0.302 5e-13
TIGR_CMR|SPO_2617296 SPO_2617 "SPFH domain/band 7 f 0.608 0.557 0.302 5e-13
UNIPROTKB|Q81JF5321 BAS1928 "SPFH domain/Band 7 fa 0.701 0.591 0.285 5.3e-13
TIGR_CMR|BA_2075321 BA_2075 "SPFH domain/Band 7 fa 0.701 0.591 0.285 5.3e-13
UNIPROTKB|Q602F1309 MCA3112 "SPFH domain/Band 7 fa 0.715 0.627 0.275 8.8e-11
UNIPROTKB|Q8CX36311 SO_4129 "Putative negative reg 0.675 0.588 0.268 1.2e-09
TAIR|locus:2196749 AT1G69840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 247/283 (87%), Positives = 260/283 (91%)

Query:     1 MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
             MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct:     1 MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query:    61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
             KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct:    61 KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query:   121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA-------------- 166
             KNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMNEINA              
Sbjct:   121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEA 180

Query:   167 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 226
             EKILQIKRAEGEAESKYL+G+GIARQRQAIVDGLR+SVLAFSE+VPGTSSKDVMDMVLVT
Sbjct:   181 EKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVT 240

Query:   227 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 269
             QYFDT+KEIGASSK+NSVFIPHGPGAV+DIASQIR+GLLQ N+
Sbjct:   241 QYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNS 283
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0016020 "membrane" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043424 "protein histidine kinase binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2170698 HIR1 "HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100242 HIR2 "hypersensitive induced reaction 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153117 AT5G51570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LQ79 SPO2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2617 SPO_2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q81JF5 BAS1928 "SPFH domain/Band 7 family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2075 BA_2075 "SPFH domain/Band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q602F1 MCA3112 "SPFH domain/Band 7 family" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q8CX36 SO_4129 "Putative negative regulator of univalent cation permeability" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CAR7HIR2_ARATHNo assigned EC number0.86570.99260.9405yesno
Q9FM19HIR1_ARATHNo assigned EC number0.83151.00.9475nono
Q9SRH6HIR3_ARATHNo assigned EC number0.71630.98890.9403nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_2001020
annotation not avaliable (286 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 1e-132
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 8e-27
smart00244160 smart00244, PHB, prohibitin homologues 3e-26
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 1e-23
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 3e-22
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 1e-20
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 1e-07
cd03408207 cd03408, Band_7_5, A subgroup of the band 7 domain 5e-05
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 9e-05
TIGR01933261 TIGR01933, hflK, HflK protein 4e-04
cd03400124 cd03400, Band_7_1, A subgroup of the band 7 domain 0.003
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
 Score =  373 bits (959), Expect = e-132
 Identities = 163/264 (61%), Positives = 190/264 (71%), Gaps = 16/264 (6%)

Query: 12  QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVV 71
           QS VAI E FGKF  V  PGCH +       VAG+LSLRVQQLDVR ETKTKDNVFV VV
Sbjct: 1   QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVV 59

Query: 72  ASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEE 131
             +QYR   E A+DAFYKL N   QIQ+YVFDV+RA +PKL LD  FEQK++IAKAVEEE
Sbjct: 60  GQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEE 119

Query: 132 LEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINA--------------EKILQIKRAEG 177
           L +AMS YG+EIV TLI DI+PD  VKRAMNEINA              EKI  IK AE 
Sbjct: 120 LREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEA 179

Query: 178 EAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA 237
           +AE+K L G+G A QRQAI DGLR+S+L+ ++ VPG ++KDVMD++LV QYFDT+K  G 
Sbjct: 180 DAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239

Query: 238 SSKTNSVFIPHGPGAVKDIASQIR 261
           SS T  VF PHGPG  +DI +QIR
Sbjct: 240 SSST-VVFRPHGPGGAQDIYAQIR 262

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|130988 TIGR01933, hflK, HflK protein Back     alignment and domain information
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 271
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
KOG2620301 consensus Prohibitins and stomatins of the PID sup 100.0
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 100.0
KOG2621288 consensus Prohibitins and stomatins of the PID sup 100.0
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 100.0
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 100.0
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.98
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.97
KOG3090290 consensus Prohibitin-like protein [Posttranslation 99.95
KOG3083271 consensus Prohibitin [Posttranslational modificati 99.94
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.89
KOG2962322 consensus Prohibitin-related membrane protease sub 99.8
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.8
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.78
KOG2668 428 consensus Flotillins [Intracellular trafficking, s 99.76
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.67
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.61
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.43
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 98.84
PTZ00491850 major vault protein; Provisional 98.41
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 97.33
PRK13665316 hypothetical protein; Provisional 96.15
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 95.64
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 95.33
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 95.08
COG1580159 FliL Flagellar basal body-associated protein [Cell 94.53
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 94.28
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 93.99
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 93.63
PRK11029334 FtsH protease regulator HflC; Provisional 92.99
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 91.49
PRK10930419 FtsH protease regulator HflK; Provisional 89.73
PF0374899 FliL: Flagellar basal body-associated protein FliL 86.61
KOG2620301 consensus Prohibitins and stomatins of the PID sup 86.59
PRK07718142 fliL flagellar basal body-associated protein FliL; 84.55
COG4864328 Uncharacterized protein conserved in bacteria [Fun 82.58
PRK04057203 30S ribosomal protein S3Ae; Validated 82.29
PRK05697137 flagellar basal body-associated protein FliL-like 81.0
PRK06654181 fliL flagellar basal body-associated protein FliL; 80.53
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
Probab=100.00  E-value=2e-49  Score=347.57  Aligned_cols=248  Identities=65%  Similarity=0.959  Sum_probs=226.7

Q ss_pred             CCceEEEEecCeeeeeeCCcceeecCCccceEeeeeeeeEEEecCCCccccCCCCEEEEEEEEEEEEcccchhhhhccCc
Q 024195           12 QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLS   91 (271)
Q Consensus        12 ~ge~~Vv~~~G~~~~~l~pG~h~~~P~i~~~v~~~v~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrI~~~~~~~~~~~~~   91 (271)
                      +|++|||++||++.++++|||||++||+ +++...+++|.+.++++.+++|+|++.|.|+++++|||.|+.+.+++|++.
T Consensus         1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i-~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~   79 (262)
T cd03407           1 QSQVAIIERFGKFFKVAWPGCHFVIPLV-ETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG   79 (262)
T ss_pred             CcEEEEEeecCcccccCCCCeEEEeccc-cceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence            5899999999999999999999999999 676457999999999988899999999999999999999844449999999


Q ss_pred             ChHHHHHHHHHHHHHhHccCCcHHHHHhcHHHHHHHHHHHHHHHhhccCeEEEEEEeeecCCChHHHHHHHHH-HH----
Q 024195           92 NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI-NA----  166 (271)
Q Consensus        92 ~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~i~~~i~~~l~~~~~~~Gi~v~~V~I~~i~~p~~v~~ai~~~-~a----  166 (271)
                      ++...|.+.+++++|+++|++++++++++|+.|+..+.+.+++.+++|||.|++|.|+++.||+++.+||++. .|    
T Consensus        80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~  159 (262)
T cd03407          80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR  159 (262)
T ss_pred             CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999773 22    


Q ss_pred             ---------HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc
Q 024195          167 ---------EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA  237 (271)
Q Consensus       167 ---------ek~~~i~~Ae~eae~~~~~Ae~~a~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lea~~~~~~  237 (271)
                               ++.+.+..|+|++++.+++|+|+|++.++.|+|+++....+.+++++.+.+++.++++..+|+|+++++++
T Consensus       160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~  239 (262)
T cd03407         160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR  239 (262)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence                     23357789999999999999999999999999999998888877766666778889999999999999998


Q ss_pred             cCCCcEEEEcCCCCchhhHHHHHH
Q 024195          238 SSKTNSVFIPHGPGAVKDIASQIR  261 (271)
Q Consensus       238 ~~~~~~i~lp~~~~~~~~~~~~~~  261 (271)
                      ++| +++++|.+++++.+++.+++
T Consensus       240 ~~~-kviv~p~~~~~~~~~~~~~~  262 (262)
T cd03407         240 SSS-TVVFRPHGPGGAQDIYAQIR  262 (262)
T ss_pred             CCC-CEEEecCCCccHHHHHHhcC
Confidence            866 89999999999999999875

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only] Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK04057 30S ribosomal protein S3Ae; Validated Back     alignment and domain information
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated Back     alignment and domain information
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 5e-12
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 6e-09
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 2e-07
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 1e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
 Score = 61.0 bits (148), Expect = 5e-12
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 40  GSQVAGQLSLRVQQLDVRCET-KTKDNVFVNVVASVQYRALAEKASDAFYK---LSNTRS 95
                 ++SL +  L  RCE  +T + V + V    Q + + EK   A      L     
Sbjct: 3   SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQ 62

Query: 96  QIQAYVFDVI----RASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151
            I+  V   +    R+ +  L ++  ++ ++  AK V E     +   G EI+   I D+
Sbjct: 63  DIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 122

Query: 152 EPDEHVKRAM 161
                   ++
Sbjct: 123 YDKVDYLSSL 132
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.98
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.95
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.88
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.87
2zuo_A861 MVP, major vault protein; repeat domains, protein- 98.4
2xzm_4265 40S ribosomal protein S3A; ribosome, translation; 82.62
3u5c_B255 RP10A, 40S ribosomal protein S1-A; translation, ri 81.23
3v6i_B105 V-type ATP synthase, subunit (VAPC-therm); periphe 80.95
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.98  E-value=7.3e-32  Score=224.23  Aligned_cols=179  Identities=21%  Similarity=0.293  Sum_probs=147.3

Q ss_pred             CccceEeeeeeeeEEEecCCC-ccccCCCCEEEEEEEEEEEEcccchhhhhccCcChHHHHHHHHHHHHHhHccCCcHHH
Q 024195           38 CLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDA  116 (271)
Q Consensus        38 ~i~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~  116 (271)
                      |+ +++ .++|+|.+++++++ +++|+|+++|.|+++++|||.|  |.++++.+.|+...+.+++++++|+++|++++++
T Consensus         2 fi-~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~e   77 (188)
T 3bk6_A            2 IF-EKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDE   77 (188)
T ss_dssp             CE-EEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             ce-EEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence            45 677 68999999999988 7999999999999999999998  9999999999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHHHHHHHHhhccCeEEEEEEeeecCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHH
Q 024195          117 TFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAI  196 (271)
Q Consensus       117 l~~~R~~i~~~i~~~l~~~~~~~Gi~v~~V~I~~i~~p~~v~~ai~~~~aek~~~i~~Ae~eae~~~~~Ae~~a~~~~~~  196 (271)
                      ++++|++|+..+++.+++.+++|||.|.+|.|++|.||+++.++|++.        .+|+.++++.+++|+|++++.++.
T Consensus        78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~--------~~Aere~~A~i~~Aege~~a~~~~  149 (188)
T 3bk6_A           78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQ--------AEAERERRARITLAEAERQAAEKL  149 (188)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHH--------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999752        245566777777888887777777


Q ss_pred             HhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhccCCCc
Q 024195          197 VDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTN  242 (271)
Q Consensus       197 a~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lea~~~~~~~~~~~  242 (271)
                      +++..    .++.+          +.++++||||++.++++++|++
T Consensus       150 a~a~~----~~~~~----------~~~l~lr~le~~~~ia~~~~~~  181 (188)
T 3bk6_A          150 REAAE----IISEH----------PMALQLRTLQTISDVAGDKSNL  181 (188)
T ss_dssp             HHHHH----HHHHC----------TTHHHHHHTTC-----------
T ss_pred             HHHHH----HHHhC----------HHHHHHHHHHHHHHHhcCCCCc
Confidence            76643    22222          3478999999999999876543
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4 Back     alignment and structure
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B Back     alignment and structure
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 271
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 3e-18
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.7 bits (188), Expect = 3e-18
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 47  LSLRVQQLDVRCET-KTKDNVFVNVVASVQYRALAEKASDAF-------YKLSNTRSQIQ 98
           +SL +  L  RCE  +T + V + V    Q + + EK   A          + + ++ + 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 99  AYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVK 158
             +   +R+ +  L ++  ++ ++  AK V E     +   G EI+   I D+       
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 159 RAMNEINA 166
            ++ +   
Sbjct: 130 SSLGKTQT 137

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.84
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.2e-21  Score=153.66  Aligned_cols=117  Identities=17%  Similarity=0.333  Sum_probs=108.3

Q ss_pred             eeeeeeEEEecCCC-ccccCCCCEEEEEEEEEEEEcccchhhhh---------ccCcChHHHHHHHHHHHHHhHccCCcH
Q 024195           45 GQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAF---------YKLSNTRSQIQAYVFDVIRASVPKLDL  114 (271)
Q Consensus        45 ~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~~~~~~~~~---------~~~~~~~~~l~~~~~~~lr~~i~~~~~  114 (271)
                      +++|++.++++++. +++|+||++|.|+++++|||.|  |.+++         +...+++..+.+.+++++|+++|++++
T Consensus         8 ~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~--~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l   85 (143)
T d1wina_           8 QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMT--EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV   85 (143)
T ss_dssp             CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECC--CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             eEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcC--cHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            78999999999998 6999999999999999999998  44443         244677889999999999999999999


Q ss_pred             HHHHhcHHHHHHHHHHHHHHHhhccCeEEEEEEeeecCCChHHHHHHHH
Q 024195          115 DATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE  163 (271)
Q Consensus       115 ~~l~~~R~~i~~~i~~~l~~~~~~~Gi~v~~V~I~~i~~p~~v~~ai~~  163 (271)
                      ++++++|++|.+.+++.+++.+.+|||+|.+|.|+||.+|+++.+||.+
T Consensus        86 ~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~  134 (143)
T d1wina_          86 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGK  134 (143)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999964