Citrus Sinensis ID: 024240

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTAKDQSKKKVDSLDIILLFHYMSLK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHccccccccEEEEEEEcccccHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHcccccEEEEEEEcccccccEEEEEcccccEEEEEEEEEEccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEcccEEEEEEEEEEEcccccccccEEEEEEcccEEEEEEEEccccHHHHHHHHHHcccccccccccEEEEEcEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEccccHHHHHHHHHccccEEEcccEEEEEEccccHHHHHHHHHHHHHHcccccEEEcccccccccccccccccHHHHHcccccEEEEEEcccccccccEEEEEEccccHEHHHHEcccccccHHHcccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHccccccEEEcccccEEEEEEEccccEEEEEEEEEEEEcccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHccccccccccccccHcHHHHHHccc
Coil and Loop (DISEMBL)
mlkvktpknprvkRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLkkgsairytrknenirpfesggetsleffslktdcsifiygstskkrpdnlvigrtydhHIYDLVEVgvenfkplnsfiydkklaprvgskpficfvgegfESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTavssnrvfFTHCALRLKksgtivprmelvevgpcmdfvvrrhrlpnesLRKEAMKTAKDqskkkvdsLDIILLFHYMSLK
Flexible Loop (DISEMBL)
mlkvktpknprvkralekrapklvetgkktlilqgtktsntlndVLTELYLLkkgsairytrknenirpfesggetSLEFFSLKTDCSIFIygstskkrpdnlVIGRTYDHHIYDLVEVGVENFKPLNSFIydkklaprvGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKksgtivprmelvevgpcmdfvvrrhrlpneslrKEAMktakdqskkkvdsldIILLFHYMSLK
Low Complexity Region (SEG)
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTAKDQSKKKVDSLDIILLFHYMSLK
Disordered region (IsUnstruct)
****************************KTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRH************************SLDIILLFHYM***
Disordered Region (DISOPRED)
**********************LVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLN**********RVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR********************ILLFHYMS**
Disordered Region (DISEMBL)
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRK*************VDSLDIILLFHYMSLK
Disordered Region (DISPRO)
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTAKDQSK****SLDIILLFHYMSLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTAKDQSKKKVDSLDIILLFHYMSLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q9LUG5	314	Ribosome production facto	yes	no	0.914	0.786	0.748	1e-112
Q9AWM9	310	Ribosome production facto	yes	no	0.922	0.803	0.716	1e-105
Q9JJ80	306	Ribosome production facto	yes	no	0.907	0.800	0.448	8e-53
Q9H7B2	306	Ribosome production facto	yes	no	0.870	0.767	0.446	2e-51
Q2YDN6	306	Ribosome production facto	yes	no	0.870	0.767	0.446	2e-51
Q54DJ0	307	Ribosome production facto	yes	no	0.925	0.814	0.365	3e-44
Q9UUG1	317	Ribosome production facto	yes	no	0.948	0.807	0.378	1e-43
Q9VEB3	320	Ribosome production facto	yes	no	0.888	0.75	0.336	4e-39
P36160	344	Ribosome biogenesis prote	yes	no	0.940	0.738	0.389	1e-38
Q9N3F0	297	Ribosome production facto	yes	no	0.914	0.831	0.353	9e-32

>sp|Q9LUG5|RPF2_ARATH Ribosome production factor 2 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 185/247 (74%), Positives = 216/247 (87%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK L +F YDKK AP  G+KPFICF+GEGFE+V ELKHLKEVL DL RGEV++NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
            GLD AYVC+A+S  +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPN+SL 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTA 247
           KEAM+T+
Sbjct: 241 KEAMRTS 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AWM9|RPF2_ORYSJ Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/250 (71%), Positives = 215/250 (86%), Gaps = 1/250 (0%)

Query: 4   VKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRK 63
           ++ P++ R KR L K APKLVETGKKTLIL GTKTS  LN VL +L+ LK+ +A++Y++K
Sbjct: 5   IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKK 64

Query: 64  NENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVEN 123
           N+NIRPFESGGETSLEFFSLKTDCS+ +YGS SKKRP+NLV+GRTYDHHIYDLVEVGVEN
Sbjct: 65  NDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVEN 124

Query: 124 FKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGL 183
           +K + S++YDKKLAP++GSKPF  F+GE FESVEELKHLKEVL+DL +GEV+ENLNLAG+
Sbjct: 125 YKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVVENLNLAGV 184

Query: 184 DHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEA 243
           D  +VCTA+S   V+  HCALRLK+SGT +PR+ELVEVGP MD VVRRHR P ESL+KEA
Sbjct: 185 DRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYPVESLKKEA 244

Query: 244 MKTAKDQSKK 253
           MKTA D +KK
Sbjct: 245 MKTA-DHAKK 253

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9JJ80|RPF2_MOUSE Ribosome production factor 2 homolog OS=Mus musculus GN=Rpf2 PE=2 SV=2

 Score =  207 bits (526), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 113/252 (44%), Positives = 159/252 (63%), Gaps = 7/252 (2%)

Query: 3   KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
           KV  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct: 6   KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65

Query: 63  KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
           KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66  KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
            F  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct: 123 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 179

Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
           L++    TA++  +V+F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct: 180 LEYVLHFTALNG-KVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 238

Query: 243 AMKTAKDQSKKK 254
           +MK  K    KK
Sbjct: 239 SMKVPKALKPKK 250

Mus musculus (taxid: 10090)

>sp|Q9H7B2|RPF2_HUMAN Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1 SV=2

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/242 (44%), Positives = 156/242 (64%), Gaps = 7/242 (2%)

Query: 3   KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
           +V  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65

Query: 63  KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
           KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66  KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
           NF  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct: 123 NFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
           L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query: 243 AM 244
           +M
Sbjct: 239 SM 240

Homo sapiens (taxid: 9606)

>sp|Q2YDN6|RPF2_BOVIN Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/242 (44%), Positives = 156/242 (64%), Gaps = 7/242 (2%)

Query: 3   KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
           +V  PK  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   I Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query: 63  KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
           KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66  KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 122

Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
            F  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct: 123 KFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
           L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query: 243 AM 244
           +M
Sbjct: 239 SM 240

Bos taurus (taxid: 9913)

>sp|Q54DJ0|RPF2_DICDI Ribosome production factor 2 homolog OS=Dictyostelium discoideum GN=bxdc1 PE=3 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/260 (36%), Positives = 155/260 (59%), Gaps = 10/260 (3%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
            LK +  K+   K+ L  +  K VE  K+ + ++G ++S+ +  +  +L++LKK  AI+Y
Sbjct: 9   FLKREPSKSHAAKKFLRNKEAKEVEIVKQAMFIRGQQSSDIIQKLQKDLFMLKKPEAIQY 68

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            +KN   RP ES    S+EF   K++ S+F +GS SKKR  NL++GR +D+ ++D++E+G
Sbjct: 69  NKKNA-FRPMESA--ESIEFLGEKSNSSLFTFGSHSKKREHNLIMGRLFDNAVFDMIEMG 125

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           + NFK +  F  D      VG+KP   F G  FE+ E +K +  + +D+ RG ++E +NL
Sbjct: 126 ISNFKSIKEFGAD---GSAVGNKPMFIFQGNEFENNETVKKVGNLFLDMFRGRLVEYINL 182

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
            GLDH  + TAV  +++ F H       SG+ +P+++L EVGP  D  +RR +L +  L 
Sbjct: 183 VGLDHVVIMTAV-DDKILFRHYTTIFSPSGSKIPKVDLKEVGPSFDITIRRTKLASADLE 241

Query: 241 KEAMKTAKD---QSKKKVDS 257
           KEA K  K    ++KK V++
Sbjct: 242 KEAYKVHKSVVPKAKKNVET 261

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UUG1|RPF2_SCHPO Ribosome production factor 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC926.08c PE=1 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/272 (37%), Positives = 157/272 (57%), Gaps = 16/272 (5%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML+   PKN R KRALEKR PKLVE  K  + L+G  TS    DVL +++ LKK  ++ +
Sbjct: 1   MLRQVKPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNF 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            +KN NI PFE    +SLEFFS K D ++ +  + +KKRP NL   R +++ + D++E+G
Sbjct: 61  QKKN-NILPFEDA--SSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELG 117

Query: 121 VENFKPLNSFIYDKKLAPRV-GSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLN 179
           + N+K + SF       P V G+KP I F G  F++    +H+K + +D  RGE I+ L+
Sbjct: 118 IVNYKSIQSF----SATPIVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLD 173

Query: 180 LAGLDHAYVCTAVSSNR--------VFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRR 231
            AGL +  V +A  +          V F     +L K+ T +PR+EL E+GP +DF +RR
Sbjct: 174 SAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRIDFNIRR 233

Query: 232 HRLPNESLRKEAMKTAKDQSKKKVDSLDIILL 263
            +     + +EA+K  K Q  K   ++D+ ++
Sbjct: 234 VQPAESDVLEEALKKPKTQEPKPKKNVDVDII 265

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VEB3|RPF2_DROME Ribosome production factor 2 homolog OS=Drosophila melanogaster GN=CG7993 PE=2 SV=3

 Score =  161 bits (408), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 145/250 (58%), Gaps = 10/250 (4%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           +L+++ PK  + K+ L  R P+L+E+ +  L L G K    +   + +L  LKK      
Sbjct: 3   LLRIRKPKTRKGKKVLLAREPQLIESARTMLFLDGRKCGGNVKLCMKDLQALKKPLVKVL 62

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            RKN+ I PF+    +SLEF ++K D ++F +GSTSKKRPDN+++GR +++ + D+ E+G
Sbjct: 63  NRKND-ITPFDD--PSSLEFLTMKNDAALFTFGSTSKKRPDNIILGRIFENEVLDMFELG 119

Query: 121 VENFKPLNSFIYDKKLAPRVGS--KPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENL 178
           ++ ++ ++ F  +K     +G+  KP + F G  +   EEL+ L+ + +D  + E ++++
Sbjct: 120 IKRYQAISEFKNEK-----IGACVKPCLVFNGPKWAQTEELRRLRNLFIDTFQREKVDSI 174

Query: 179 NLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNES 238
            L G++H    T      +      + LKKSG   PR+EL E+GP  DF +RR ++ +E 
Sbjct: 175 RLQGIEHVLSFTVTDDMNILMRSYRILLKKSGQRTPRIELEEIGPSADFSIRRTKIASED 234

Query: 239 LRKEAMKTAK 248
           L K+A K  K
Sbjct: 235 LYKQARKQPK 244

Drosophila melanogaster (taxid: 7227)

>sp|P36160|RPF2_YEAST Ribosome biogenesis protein RPF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF2 PE=1 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/275 (38%), Positives = 153/275 (55%), Gaps = 21/275 (7%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M++   PKN R KRAL KR  KLVE  K+ L + G   +  L+D++ +L  LKK    R+
Sbjct: 1   MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            RKN +I PFE    + LEFFS K DCS+ +  ++SKKR +N+   RT+ + IYD++E+ 
Sbjct: 61  NRKN-DIHPFED--MSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELM 117

Query: 121 V-ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLN 179
           V +NFK L+ F   KKL   VG KP   F G  F++    K +K + +D  RGE  +  +
Sbjct: 118 VADNFKLLSDF---KKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQD 174

Query: 180 LAGLDHAYVCTAVSSNR-------VFFTHCALRLKKS---GTIVPRMELVEVGPCMDFVV 229
           +AGL H    T     +       V F    L+  KS   G  +PR+ELVE+GP +DF +
Sbjct: 175 VAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKI 234

Query: 230 RRHRLPNESLRKEAMKTAKD---QSKKKVDSLDII 261
            R   P+  +  EA K  K    ++KK V+ LDI+
Sbjct: 235 GRIHTPSPDMVTEAHKKPKQLEMKTKKNVE-LDIM 268

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9N3F0|RPF2_CAEEL Ribosome production factor 2 homolog OS=Caenorhabditis elegans GN=Y54E10A.10 PE=3 SV=1

 Score =  137 bits (345), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 142/263 (53%), Gaps = 16/263 (6%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M++V+  K  + KR L  RA K VE  KK L  +G KT+  ++  + +L+ +KK    + 
Sbjct: 1   MVRVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKM 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            + N     FE   ET +     K D S+F+ GS SKK+P+ L  GRTYD  + D+ E+ 
Sbjct: 61  DKHNP-YHLFED--ETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELR 117

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           + ++K  ++F   K     +GSKP +   G  FES  ++K +  ++VD  RG  ++ + L
Sbjct: 118 ITSYKSSSNFEAAKMT---LGSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRL 174

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALR-----LKKSGTIVPRMELVEVGPCMDFVVRRHRLP 235
            GL+   V TA+       T+ ALR     LKKS T  PR+EL E+GP + F V R +L 
Sbjct: 175 EGLETVIVFTALDE-----TNLALRVYRPMLKKSATATPRVELAEMGPSISFEVMRKKLA 229

Query: 236 NESLRKEAMKTAKDQSKKKVDSL 258
           +++L K A K  K   KK+  +L
Sbjct: 230 DDALFKLACKKPKALMKKRRKNL 252

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
225440986	315	PREDICTED: ribosome production factor 2	0.966	0.828	0.844	1e-128
224133796	314	predicted protein [Populus trichocarpa]	0.955	0.821	0.813	1e-120
255575371	315	brix domain containing protein, putative	0.903	0.774	0.840	1e-119
356548339	314	PREDICTED: ribosome production factor 2	0.922	0.792	0.795	1e-115
356533497	314	PREDICTED: ribosome production factor 2	0.918	0.789	0.794	1e-114
379067353	321	brix domain-containing protein [Nicotian	0.937	0.788	0.743	1e-110
18403828	314	ribosome production factor 2-like protei	0.914	0.786	0.748	1e-110
449440199	322	PREDICTED: ribosome production factor 2	0.896	0.751	0.768	1e-109
449501062	386	PREDICTED: ribosome production factor 2	0.896	0.626	0.768	1e-109
297831116	313	brix domain-containing protein [Arabidop	0.911	0.785	0.756	1e-108

>gi|225440986|ref|XP_002283513.1| PREDICTED: ribosome production factor 2 homolog [Vitis vinifera] gi|297740066|emb|CBI30248.3| unnamed protein product [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/263 (84%), Positives = 244/263 (92%), Gaps = 2/263 (0%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           MLK+KTPK+ + KR +EKRAPKLVE+GKKTLILQGTKTSN LN VLTE+Y LKK SA+RY
Sbjct: 1   MLKIKTPKSGKAKREIEKRAPKLVESGKKTLILQGTKTSNVLNAVLTEIYHLKKDSAVRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           TRKNENIRPFESGGETSLEFFSLKTDCSIF++GS SKKRPDNLVIGRTYDHHIYDLVEVG
Sbjct: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFVFGSHSKKRPDNLVIGRTYDHHIYDLVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           VENFK + SF YDKKL+P+VGSKPFI F+GEGFESV+ELKHLKEVL+DLLRGEV+ENLNL
Sbjct: 121 VENFKSMESFTYDKKLSPKVGSKPFIAFIGEGFESVDELKHLKEVLLDLLRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AGLDHAY+CTAVSSNRVFFTHCA+RLKKSGTIVPRMELVEVGP MD VVRRHRLPN+S+R
Sbjct: 181 AGLDHAYICTAVSSNRVFFTHCAMRLKKSGTIVPRMELVEVGPSMDLVVRRHRLPNDSVR 240

Query: 241 KEAMKTAKDQSKKKVD--SLDII 261
           KEAMKTAK+Q KKKV   S D+I
Sbjct: 241 KEAMKTAKEQPKKKVKNVSQDVI 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133796|ref|XP_002321663.1| predicted protein [Populus trichocarpa] gi|222868659|gb|EEF05790.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/258 (81%), Positives = 234/258 (90%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           MLKVKTPK  RVKR LEKR PKLVE  KKTLILQGTKTSN LN VL+E+Y LK+ +AIRY
Sbjct: 1   MLKVKTPKYGRVKRELEKREPKLVELAKKTLILQGTKTSNVLNTVLSEIYHLKRDNAIRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           TRKN++IRPFESGGETSLEFFSLKTDCSIF+YGSTSKKRPDNLVIGRTYDHHIYDL+EVG
Sbjct: 61  TRKNDSIRPFESGGETSLEFFSLKTDCSIFVYGSTSKKRPDNLVIGRTYDHHIYDLIEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           VENFK ++SF YDKKLAP+ GSKPFI F GE FESV+ELKHLKEVL++LLRGEV++NLNL
Sbjct: 121 VENFKRMDSFTYDKKLAPQAGSKPFIVFSGEAFESVDELKHLKEVLLELLRGEVVDNLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AGL   YVCTA+SSNRVF THCA+RLKKSGTIVPR+ELVE+GP MDFVVRRHRLPNESLR
Sbjct: 181 AGLGRVYVCTAISSNRVFLTHCAMRLKKSGTIVPRIELVEIGPSMDFVVRRHRLPNESLR 240

Query: 241 KEAMKTAKDQSKKKVDSL 258
           KEAMKTAKD+  KK+ ++
Sbjct: 241 KEAMKTAKDKLHKKIKNV 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575371|ref|XP_002528588.1| brix domain containing protein, putative [Ricinus communis] gi|223531984|gb|EEF33796.1| brix domain containing protein, putative [Ricinus communis]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/244 (84%), Positives = 225/244 (92%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           MLK+K P  PR+KRALEKRAPKLVETGKKTLIL+GTKTS+ LN VLT++Y LKK SAIRY
Sbjct: 1   MLKIKAPVKPRIKRALEKRAPKLVETGKKTLILEGTKTSSVLNSVLTDIYHLKKESAIRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           TRKN+NIRPFESGGETSLEFFS KTDCSIF+YGSTSKKRPDNLVIGRTYDHHIYDLVEVG
Sbjct: 61  TRKNDNIRPFESGGETSLEFFSEKTDCSIFVYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK ++SF YDKK AP VGSKPFI FVGEGFESV+ELKHLKEVL+DLLRGE +ENLNL
Sbjct: 121 IENFKSMSSFKYDKKAAPHVGSKPFIAFVGEGFESVDELKHLKEVLLDLLRGEAVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AGLD AYVCTA SSNRVF THCA+RLKKSGT++PR+EL+EVGP MD VVRRHRLPN+SLR
Sbjct: 181 AGLDRAYVCTATSSNRVFLTHCAIRLKKSGTVIPRIELIEVGPSMDLVVRRHRLPNDSLR 240

Query: 241 KEAM 244
           KEAM
Sbjct: 241 KEAM 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548339|ref|XP_003542560.1| PREDICTED: ribosome production factor 2 homolog [Glycine max]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/249 (79%), Positives = 226/249 (90%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML++KT K  + KR LEKRAPKLVE+GKKTLIL GTKTS  LN VL ++Y LKK SA++Y
Sbjct: 1   MLEIKTAKTRKGKRELEKRAPKLVESGKKTLILHGTKTSGVLNAVLAQIYHLKKDSAVKY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +RKNEN++PFE+GGETSLEFFSLKTDCS+F+YGS SKKRPDNLVIGRTYDHHI+DLVEVG
Sbjct: 61  SRKNENVKPFEAGGETSLEFFSLKTDCSVFVYGSHSKKRPDNLVIGRTYDHHIFDLVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           VENFKP+ SF Y+KKLAP+ GSKPFI F+GEGFE+VEELKHLKEVL+DLLRGEV+ENLNL
Sbjct: 121 VENFKPMESFSYNKKLAPKEGSKPFIVFIGEGFEAVEELKHLKEVLLDLLRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AG+D AYVC A+S NRVFFTHCALRLKKSGT+VPRMEL EVGP MDFVVRRHR PNESLR
Sbjct: 181 AGVDRAYVCAALSPNRVFFTHCALRLKKSGTVVPRMELEEVGPSMDFVVRRHRPPNESLR 240

Query: 241 KEAMKTAKD 249
           KEAMKT+++
Sbjct: 241 KEAMKTSRE 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533497|ref|XP_003535300.1| PREDICTED: ribosome production factor 2 homolog [Glycine max]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/248 (79%), Positives = 224/248 (90%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML++KT K  + KR LEKRAPKLVE+GKKTLIL GTKTS  LN VL ++Y LKK  A++Y
Sbjct: 1   MLEIKTAKTRKGKRELEKRAPKLVESGKKTLILHGTKTSGVLNAVLAQIYHLKKDCAVKY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +R+NEN++PFE+GGETSLEFFSLKTDCSIF+YGS SKKRPDNLVIGRTYDHHIYDLVEVG
Sbjct: 61  SRRNENVKPFEAGGETSLEFFSLKTDCSIFVYGSHSKKRPDNLVIGRTYDHHIYDLVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           VENFKP+ SF YDKKLAP+ GSKPFI F+GEGFE+VEELKHLKEVL+DLLRGEV+ENLNL
Sbjct: 121 VENFKPMESFSYDKKLAPKEGSKPFIVFIGEGFEAVEELKHLKEVLLDLLRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           AG+D AYVC A+S NRVFFTHCALRLKKSGT+VPRMEL EVGP MDFV+RRHR PNESLR
Sbjct: 181 AGVDRAYVCAALSPNRVFFTHCALRLKKSGTVVPRMELEEVGPSMDFVLRRHRPPNESLR 240

Query: 241 KEAMKTAK 248
           KEA+KT++
Sbjct: 241 KEALKTSR 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379067353|gb|AFC90090.1| brix domain-containing protein [Nicotiana benthamiana]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/253 (74%), Positives = 223/253 (88%)

Query: 2   LKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYT 61
            K+KTP+  R++R LEKRAPKLVE+GKKTLIL GTKTS  LN+V+TE+Y LK+ ++++YT
Sbjct: 8   WKIKTPQKGRIRRELEKRAPKLVESGKKTLILHGTKTSQVLNEVMTEIYHLKRDNSVKYT 67

Query: 62  RKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGV 121
           RKN+N+RPFESGGE SLEFFSLKTDCS+F+YGS SKKRP+NLVIGRTYDHH+YDLVEVGV
Sbjct: 68  RKNDNVRPFESGGEASLEFFSLKTDCSLFVYGSHSKKRPNNLVIGRTYDHHVYDLVEVGV 127

Query: 122 ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLA 181
           E FK + SF YDK LAP++GSKPF  F+GEGFESVEELKHLKEVL+DL  GEV+ NLNLA
Sbjct: 128 EEFKSMKSFKYDKNLAPKIGSKPFFTFIGEGFESVEELKHLKEVLLDLFHGEVVTNLNLA 187

Query: 182 GLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRK 241
           GLD  Y+CT VS  +VF THCALRLKKSGT+VPR+ELVEVGP MD VVRRHRLP++SL+K
Sbjct: 188 GLDCVYLCTVVSPKKVFLTHCALRLKKSGTVVPRIELVEVGPSMDLVVRRHRLPDDSLKK 247

Query: 242 EAMKTAKDQSKKK 254
           EAMKT+ D++KKK
Sbjct: 248 EAMKTSLDKAKKK 260

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403828|ref|NP_566734.1| ribosome production factor 2-like protein [Arabidopsis thaliana] gi|18203245|sp|Q9LUG5.1|RPF2_ARATH RecName: Full=Ribosome production factor 2 homolog; AltName: Full=Brix domain-containing protein 1 homolog; AltName: Full=Ribosome biogenesis protein RPF2 homolog gi|9294519|dbj|BAB02781.1| unnamed protein product [Arabidopsis thaliana] gi|17979361|gb|AAL49906.1| unknown protein [Arabidopsis thaliana] gi|21689701|gb|AAM67472.1| unknown protein [Arabidopsis thaliana] gi|332643266|gb|AEE76787.1| ribosome production factor 2-like protein [Arabidopsis thaliana]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/247 (74%), Positives = 216/247 (87%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK L +F YDKK AP  G+KPFICF+GEGFE+V ELKHLKEVL DL RGEV++NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
            GLD AYVC+A+S  +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPN+SL 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTA 247
           KEAM+T+
Sbjct: 241 KEAMRTS 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440199|ref|XP_004137872.1| PREDICTED: ribosome production factor 2 homolog [Cucumis sativus]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/242 (76%), Positives = 216/242 (89%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML+++TPKN +VKR LEKRAPKLVETGKKTLIL GTKTS  LN+VLTELY LKK SA++Y
Sbjct: 1   MLQIRTPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +RKN+ I+PFESGG+ SLEFFSLKTDCSI +YGS SKKRP+NLVI RTY+ HIYD+VEVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIARTYNQHIYDMVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK ++SF YDKKL+PRVGSKPFI F+GEGFE+VEELKHLKEVL+D  RGEV+ENLNL
Sbjct: 121 IENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           +GLD  YVCTA+S N+VF THCALRLKKSG++VPRMELVEVGP MD V+RRHRLP + LR
Sbjct: 181 SGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLR 240

Query: 241 KE 242
           KE
Sbjct: 241 KE 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501062|ref|XP_004161267.1| PREDICTED: ribosome production factor 2 homolog [Cucumis sativus]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/242 (76%), Positives = 216/242 (89%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           ML+++TPKN +VKR LEKRAPKLVETGKKTLIL GTKTS  LN+VLTELY LKK SA++Y
Sbjct: 1   MLQIRTPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKY 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
           +RKN+ I+PFESGG+ SLEFFSLKTDCSI +YGS SKKRP+NLVI RTY+ HIYD+VEVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIARTYNQHIYDMVEVG 120

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +ENFK ++SF YDKKL+PRVGSKPFI F+GEGFE+VEELKHLKEVL+D  RGEV+ENLNL
Sbjct: 121 IENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVVENLNL 180

Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
           +GLD  YVCTA+S N+VF THCALRLKKSG++VPRMELVEVGP MD V+RRHRLP + LR
Sbjct: 181 SGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLR 240

Query: 241 KE 242
           KE
Sbjct: 241 KE 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831116|ref|XP_002883440.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329280|gb|EFH59699.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/246 (75%), Positives = 213/246 (86%)

Query: 2   LKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYT 61
           ++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ VL ELY LKKG AIRY+
Sbjct: 1   MEIRTPKTGKAKRVLENRAPKLVETGKKTLILHGTKTSATLSSVLMELYRLKKGGAIRYS 60

Query: 62  RKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGV 121
           R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG+
Sbjct: 61  RRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVGI 120

Query: 122 ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLA 181
           ENFK L +F YDKK AP  GSKPFICF GEGFE+V ELKHLKEVL DL RGEV++NLNL 
Sbjct: 121 ENFKTLLAFSYDKKFAPHEGSKPFICFTGEGFENVPELKHLKEVLTDLFRGEVVDNLNLT 180

Query: 182 GLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRK 241
           GLD AYVC+A+S  +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPNESL K
Sbjct: 181 GLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNESLMK 240

Query: 242 EAMKTA 247
           EAM+T+
Sbjct: 241 EAMRTS 246

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2088015	314	AT3G23620 "AT3G23620" [Arabido	0.959	0.824	0.737	1.2e-104
UNIPROTKB|E1BZU0	306	RPF2 "Uncharacterized protein"	0.929	0.820	0.430	3e-53
MGI|MGI:1914489	306	Rpf2 "ribosome production fact	0.907	0.800	0.448	1.7e-52
RGD|1306906	306	Rpf2 "ribosome production fact	0.907	0.800	0.452	2.1e-52
UNIPROTKB|F1MMB9	306	RPF2 "Ribosome production fact	0.907	0.800	0.448	3.5e-52
UNIPROTKB|Q2YDN6	306	RPF2 "Ribosome production fact	0.907	0.800	0.448	3.5e-52
UNIPROTKB|Q9H7B2	306	RPF2 "Ribosome production fact	0.907	0.800	0.448	3.5e-52
UNIPROTKB|F1RT06	263	RPF2 "Uncharacterized protein"	0.937	0.961	0.441	3.5e-52
UNIPROTKB|E2RRK1	306	RPF2 "Uncharacterized protein"	0.907	0.800	0.436	8.3e-51
ZFIN|ZDB-GENE-040426-2501	308	rpf2 "ribosome production fact	0.888	0.779	0.425	6e-48

TAIR|locus:2088015 AT3G23620 "AT3G23620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
 Identities = 191/259 (73%), Positives = 225/259 (86%)

Query:     1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
             M++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY
Sbjct:     1 MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query:    61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
             +R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG
Sbjct:    61 SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query:   121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
             +ENFK L +F YDKK AP  G+KPFICF+GEGFE+V ELKHLKEVL DL RGEV++NLNL
Sbjct:   121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query:   181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
              GLD AYVC+A+S  +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPN+SL 
Sbjct:   181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query:   241 KEAMKTAKDQSKKKVDSLD 259
             KEAM+T+KD+ KKK  ++D
Sbjct:   241 KEAMRTSKDKPKKKEKNVD 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|E1BZU0 RPF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 112/260 (43%), Positives = 167/260 (64%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   ++T+ +VL ++Y LKK  A+ Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLTENTKNAMLIKGGNANSTVTEVLKDIYALKKPFAVMYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NL++GR +D+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFLFGSHNKKRPNNLIVGRMFDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
             NF  L     +K   P  G+KP + F G+ F+  EE + LK +L+D  RG  + N+ LAG
Sbjct:   123 NFVSLKDIKNNK--CPE-GTKPMLIFAGDTFDLSEEYRRLKSLLIDFFRGPTVPNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L+H    TAV   +++     + LKKSG  +PR+EL ++GP +D V+RR  L ++ L K 
Sbjct:   180 LEHVLHFTAVDG-KIYMRSYKVLLKKSGCKIPRIELEDIGPSLDLVMRRTHLASDDLYKL 238

Query:   243 AMKTAK--DQSKKKVDSLDI 260
             ++K  K     KKK  S D+
Sbjct:   239 SLKQPKALKPKKKKNISHDV 258

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1914489 Rpf2 "ribosome production factor 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 113/252 (44%), Positives = 159/252 (63%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             KV  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct:     6 KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +V+F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKK 254
             +MK  K    KK
Sbjct:   239 SMKVPKALKPKK 250

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1306906 Rpf2 "ribosome production factor 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 114/252 (45%), Positives = 159/252 (63%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             KV  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct:     6 KVLKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANATVTQVLRDVYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L      K   P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKNLLIDFFRGPTVSNVRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +V+F    L LKKSG   PR+EL E+GP +D VVRR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVVRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKK 254
             +MK  K    KK
Sbjct:   239 SMKVPKALKPKK 250

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

UNIPROTKB|F1MMB9 RPF2 "Ribosome production factor 2 homolog" [Bos taurus (taxid:9913)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 113/252 (44%), Positives = 162/252 (64%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   I Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L   I + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKK 254
             +MK  K    KK
Sbjct:   239 SMKMPKALKPKK 250

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q2YDN6 RPF2 "Ribosome production factor 2 homolog" [Bos taurus (taxid:9913)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 113/252 (44%), Positives = 162/252 (64%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   I Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L   I + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKK 254
             +MK  K    KK
Sbjct:   239 SMKMPKALKPKK 250

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q9H7B2 RPF2 "Ribosome production factor 2 homolog" [Homo sapiens (taxid:9606)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 113/252 (44%), Positives = 162/252 (64%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
             NF  L   I + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 NFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKK 254
             +MK  K    KK
Sbjct:   239 SMKMPKALKPKK 250

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RT06 RPF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 118/267 (44%), Positives = 169/267 (63%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  P+  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   + Y +
Sbjct:     6 RVVKPQTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+GVE
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGVE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L   I + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVPNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             LD+    TA++  +++F    L LKKSG   PR+EL E+GP +D V+RR  L ++ L K 
Sbjct:   180 LDYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238

Query:   243 AMKTAKDQSKKKVDSLDI----ILLFH 265
             +MK  K     KV  L+I    I +FH
Sbjct:   239 SMKMPK---ALKVHDLEIGPMFICIFH 262

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E2RRK1 RPF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 110/252 (43%), Positives = 161/252 (63%)

Query:     3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
             +V  PK  R KR LEKR PKL E  K  ++++G   ++ +  VL ++Y LKK   + Y +
Sbjct:     6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSMVTQVLRDVYALKKPYGVLYKK 65

Query:    63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
             KN   RPFE   +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct:    66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122

Query:   123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
              F  L   + + K  P  G+KP + F G+ F+  E+ + LK +L+D  RG  + N+ LAG
Sbjct:   123 KFVSLKD-VKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKNLLIDFFRGPTVSNIRLAG 179

Query:   183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
             L++    TA++  +++F    L LKKSG   PR+EL E+G  +D V+RR RL ++ L K 
Sbjct:   180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGLSLDLVLRRTRLASDDLYKL 238

Query:   243 AMKTAKDQSKKK 254
             +MK  K    KK
Sbjct:   239 SMKMPKALKPKK 250

GO:0005730 "nucleolus" evidence=IEA

ZFIN|ZDB-GENE-040426-2501 rpf2 "ribosome production factor 2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 105/247 (42%), Positives = 152/247 (61%)

Query:     8 KNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENI 67
             K  R KR LE R  KL E  K ++I++G  TS+T++  L ++Y LKK +A+ Y +KN  +
Sbjct:    11 KTRRSKRFLESRESKLKENPKNSMIIKGGNTSSTVSQALKDVYALKKPNAVLYKKKNM-V 69

Query:    68 RPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPL 127
             RPFE    T+LEFFS K+DCS+F++GS +KKRP+NL+ GR +D H+ D+ E+G+ENF+ L
Sbjct:    70 RPFEDS--TALEFFSKKSDCSLFLFGSHNKKRPNNLIFGRMFDFHVLDMFELGIENFRSL 127

Query:   128 NSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAY 187
                  DK   P  G+KP + F G+ FE+  E + LK VL D   G  +  + LAGL+H  
Sbjct:   128 TDIKMDK--CPE-GTKPMLVFAGDLFETDREYQRLKSVLTDFFCGPRVSAVRLAGLEHVL 184

Query:   188 VCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTA 247
               TA+   +++     + LKKSG   PR+EL E+GP  DF +RR+   ++ L K A +  
Sbjct:   185 HFTALEG-KIYMRSYKVLLKKSGCRTPRIELEEIGPSFDFTMRRNHTASDDLYKTAHRQP 243

Query:   248 KDQSKKK 254
             K    KK
Sbjct:   244 KGAKPKK 250

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UUG1	RPF2_SCHPO	No assigned EC number	0.3786	0.9481	0.8075	yes	no
Q9AWM9	RPF2_ORYSJ	No assigned EC number	0.716	0.9222	0.8032	yes	no
Q54DJ0	RPF2_DICDI	No assigned EC number	0.3653	0.9259	0.8143	yes	no
Q9JJ80	RPF2_MOUSE	No assigned EC number	0.4484	0.9074	0.8006	yes	no
Q9LUG5	RPF2_ARATH	No assigned EC number	0.7489	0.9148	0.7866	yes	no
Q9N3F0	RPF2_CAEEL	No assigned EC number	0.3536	0.9148	0.8316	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•	•		•		0.915
	GSVIVG00026600001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa)				•	•		•		0.896
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•	•		•		0.883
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•		•		0.881
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•	•				0.857
	GSVIVG00027646001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa)				•	•				0.836
	GSVIVG00028006001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (318 aa)				•	•		•		0.825
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•				0.816
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•	•				0.816
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.811

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
COG5106	316	COG5106, RPF2, Uncharacterized conserved protein [	2e-52
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	4e-25
pfam04427	176	pfam04427, Brix, Brix domain	4e-23

>gnl|CDD|227437 COG5106, RPF2, Uncharacterized conserved protein [Function unknown]

 Score =  172 bits (438), Expect = 2e-52
 Identities = 96/270 (35%), Positives = 138/270 (51%), Gaps = 15/270 (5%)

Query: 1   MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
           M +   PKN RVKRAL KR PKLVE  K  +   G     TL DV+ +   LKK   I +
Sbjct: 1   MFRAVKPKNARVKRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEIGF 60

Query: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
            RKN  I PFE    + LEFFS K D  + +  ++ KKR  NL IGR +++ + D++E+ 
Sbjct: 61  IRKN-TIHPFEDT--SPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELK 117

Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
           +  +K ++ F   +   P +G KP + F G  F++    + +K + +D  RGE  + L+ 
Sbjct: 118 INRYKSVSDF---ECAGPELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDS 174

Query: 181 AGLDHAYVCTAVSS-------NRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHR 233
           AGL      T             V F     +L K+ T +PR+EL E GP +DF + R  
Sbjct: 175 AGLSWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKTKTNLPRLELEECGPRLDFEIVRSY 234

Query: 234 LPNESLRKEAMKTAKDQSKK--KVDSLDII 261
             ++ L KEA+K  K Q  K  K  + DI 
Sbjct: 235 HCSDDLYKEALKKPKTQEPKPKKNVAKDIF 264

Length = 316

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score = 97.8 bits (244), Expect = 4e-25
 Identities = 54/198 (27%), Positives = 75/198 (37%), Gaps = 19/198 (9%)

Query: 31  LILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLK-TDCSI 89
           LI    K S     +  +L  L   S      KN+            LEF S K     +
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNK--------LNELLEFASEKGNTDLL 52

Query: 90  FIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFV 149
            ++ S+SK RP NL I R  +    D   + V   K L  F   K      GS+P + F 
Sbjct: 53  VVFESSSKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKGF---KTGNCLTGSRPLLIFN 109

Query: 150 GEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKS 209
               E     K +KE+  DL  G      +L GL      +    + +FF H  ++  K 
Sbjct: 110 NFFTEL---GKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQ-DDYIFFRHYRIKFGKK 165

Query: 210 GTIVPRMELVEVGPCMDF 227
               PR+EL E+GP    
Sbjct: 166 K---PRVELQEIGPRFTL 180

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score = 92.7 bits (231), Expect = 4e-23
 Identities = 56/201 (27%), Positives = 81/201 (40%), Gaps = 25/201 (12%)

Query: 32  ILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFI 91
           I    K S  L  +  +L LL   +A +  R  + ++         LEF   K D S+ +
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLF-PNAKKLNRGKKKLK-------DLLEFAGEKGDTSLLV 52

Query: 92  YGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGE 151
           +G   K  P NL IGR  +       E  + N K L       K     GS+P + F G 
Sbjct: 53  FGEHKK--PLNLTIGRLPNGPTL---EFRISNVKLLKDIKGKGK--GNKGSRPLLVFNGF 105

Query: 152 GFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGT 211
            F     LK +KE+L DL  G  +  + L G D     +    + +FF H   + K    
Sbjct: 106 FFTR-LGLKLIKELLQDLFPGPNVHKIPLKGGDRVITFSNQ-RDTIFFRHYRYKKK---- 159

Query: 212 IVPRMELVEVGPCMDFVVRRH 232
               +EL E+GP     +RR 
Sbjct: 160 ----VELQEIGPRFTLKLRRI 176

Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
KOG3031	307	consensus Protein required for biogenesis of the r	100.0
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	100.0
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
KOG2963	405	consensus RNA-binding protein required for 60S rib	99.95
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	99.7
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	99.51
PRK03972	208	ribosomal biogenesis protein; Validated	98.98
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	98.67
PRK00933	165	ribosomal biogenesis protein; Validated	94.43

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.1e-83  Score=575.53  Aligned_cols=262  Identities=50%  Similarity=0.781  Sum_probs=257.5

Q ss_pred             CCCccCCCChhhhhHHHHhCCccccCCcEEEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhh
Q 024240            1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEF   80 (270)
Q Consensus         1 ~~~~~k~kt~~~kr~l~~repk~~en~K~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~   80 (270)
                      |.++++||+++++|++.+|||+.+||.+.+||+.|..|++.+.++|.||++|++|.++.++|+|. |+||||.  ++|||
T Consensus         1 m~rv~k~k~~~~kr~l~kr~~klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i~~~rkN~-i~pFEd~--sslef   77 (307)
T KOG3031|consen    1 MNRVVKPKNARAKRALVKREPKLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEIRYNRKNN-IHPFEDP--SSLEF   77 (307)
T ss_pred             CCceeecchhhhHHHHHhhchhhchhhhhhhccCchhhchHHHHHHHHHHHhccCceeeeccCCC-cccCCCC--chHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999996 9999998  99999


Q ss_pred             hhccCCCcEEEEeeeCCCCCCceEEEEccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHH
Q 024240           81 FSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELK  160 (270)
Q Consensus        81 la~k~dcslf~f~s~~KKrp~~L~igR~~~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~  160 (270)
                      +++++||++|+++|||||||+||+|||+||+++|||+||+|+||+++++|+.+++   ..|++|+|+|+|+.|++++.|+
T Consensus        78 fseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~k~---~~gtKP~l~f~G~~f~~~~~~k  154 (307)
T KOG3031|consen   78 FSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYKSLSDFKAAKI---TEGTKPMLIFQGAVFDQHPEYK  154 (307)
T ss_pred             HhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHHhhhhhhhhhhhhccCC---CCCCCceEEEecchhccChHHH
Confidence            9999999999999999999999999999999999999999999999999999887   9999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCccccCCCcEEEEEEEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeEEEEeeeCCCHHHH
Q 024240          161 HLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR  240 (270)
Q Consensus       161 ~lK~ll~d~F~~~~~~~i~l~~id~vi~ft~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~~~r~~~~~~~~~  240 (270)
                      +|+|||+|||+|+.++.++|+|++|||+||+.|+..|+||+|.+.+++||+.+||+||+||||++||+++|++.||+|+|
T Consensus       155 rlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y~lklkKs~~~~PRiELeE~GPsldf~irR~~~asddL~  234 (307)
T KOG3031|consen  155 RLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVYRLKLKKSGTRTPRIELEEMGPSLDFEIRRTKLASDDLY  234 (307)
T ss_pred             HHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeeeeeeeeeccCCCCceehhhcCCceeEEEEeccCCCHHHH
Confidence            99999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhh--cCCCCcccccc----eeeeecc
Q 024240          241 KEAMKTAKDQ--SKKKVDSLDII----LLFHYMS  268 (270)
Q Consensus       241 k~A~k~pk~~--kk~KNi~~d~~----g~~h~~~  268 (270)
                      |+|||+||++  |++|||++|.|    ||||++.
T Consensus       235 k~A~k~PK~l~~K~kKNv~~D~~g~k~GriHm~k  268 (307)
T KOG3031|consen  235 KEALKKPKQLEKKKKKNVSKDAFGNKLGRIHMGK  268 (307)
T ss_pred             HHHhcCchhcccccccccchhhhcCcceeEecCh
Confidence            9999999998  89999999999    9999974

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.4e-64  Score=446.48  Aligned_cols=262  Identities=37%  Similarity=0.560  Sum_probs=251.4

Q ss_pred             CCCccCCCChhhhhHHHHhCCccccCCcEEEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhh
Q 024240            1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEF   80 (270)
Q Consensus         1 ~~~~~k~kt~~~kr~l~~repk~~en~K~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~   80 (270)
                      |.|.+|||++|.||+|.+|||+++|+.|.++|+.|..+++..-++|-|+.+|++|..+.+.++|. |+||||+  ++||+
T Consensus         1 M~r~vkpkNaR~kRAl~kRepklve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~i~f~rkn~-ihpfEd~--SplEf   77 (316)
T COG5106           1 MFRAVKPKNARVKRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEIGFIRKNT-IHPFEDT--SPLEF   77 (316)
T ss_pred             CccccCCcchHHHHHHHhcCchhhhhhhheEeccCcccchhhhhhhcchhhhccchhhccccCCc-ccccccC--CHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999997 9999999  99999


Q ss_pred             hhccCCCcEEEEeeeCCCCCCceEEEEccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHH
Q 024240           81 FSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELK  160 (270)
Q Consensus        81 la~k~dcslf~f~s~~KKrp~~L~igR~~~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~  160 (270)
                      +++++||++.+.++|+|||+|||+|||+|+..++|||||+|.+|++++||..+..   ..|.+|+++|||..|+..|.|+
T Consensus        78 fseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~~---~~g~Kpmv~fQg~~fd~hp~yr  154 (316)
T COG5106          78 FSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECAGP---ELGMKPMVVFQGINFDAHPTYR  154 (316)
T ss_pred             HHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhccCC---ccCCceEEEEeccccccchHHH
Confidence            9999999999999999999999999999999999999999999999999987654   8999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCccccCCCcEEEEEEEec---C----CeEEEEEEEEEeecCCCCCCCeeEEeeccceeEEEEeee
Q 024240          161 HLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVS---S----NRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHR  233 (270)
Q Consensus       161 ~lK~ll~d~F~~~~~~~i~l~~id~vi~ft~~d---~----~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~~~r~~  233 (270)
                      +|+|||.|||+|...+....+|+.|||+-|+..   +    +.+.||+|...+-++.+++|++||+|||||+||+++|++
T Consensus       155 ~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k~~kt~~~lpr~elee~GPrldf~i~R~~  234 (316)
T COG5106         155 RIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKTKTNLPRLELEECGPRLDFEIVRSY  234 (316)
T ss_pred             HHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecccccccCCCCceehhhcccceeeEEEeec
Confidence            999999999999999999999999999999862   2    348999999988899999999999999999999999999


Q ss_pred             CCCHHHHHHHHhhhhhh--cCCCCcccccc----eeeeecc
Q 024240          234 LPNESLRKEAMKTAKDQ--SKKKVDSLDII----LLFHYMS  268 (270)
Q Consensus       234 ~~~~~~~k~A~k~pk~~--kk~KNi~~d~~----g~~h~~~  268 (270)
                      .||+|+|++|+++|++.  |.+||+..|.|    ||+|+|-
T Consensus       235 ~~s~d~~~ealkkPk~~e~KpkKNv~~di~gdkiGriHidk  275 (316)
T COG5106         235 HCSDDLYKEALKKPKTQEPKPKKNVAKDIFGDKIGRIHIDK  275 (316)
T ss_pred             CCChHHHHHHhcCccccCCCcccchhhhhhhccccceeech
Confidence            99999999999999988  99999999999    9999974

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-47  Score=339.25  Aligned_cols=203  Identities=16%  Similarity=0.243  Sum_probs=184.3

Q ss_pred             cccCCcEEEEEeCCCCCHhHHHHHHHHHhcccccceeccc----cCCCcCcCCCCCcchhhhhhccCCCcEEEEeeeCCC
Q 024240           23 LVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR----KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKK   98 (270)
Q Consensus        23 ~~en~K~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~K----kn~~i~pFe~~~~~~le~la~k~dcslf~f~s~~KK   98 (270)
                      .+.|++++|++++|++|.+.||||+||..|+ ||++..+|    ++.          ..|+++|+.++|+.++|++++|+
T Consensus        45 ~w~NK~rvlv~ssRgis~R~RhLm~di~~Ll-ph~k~dsk~d~~k~l----------~~lnel~elkncn~~lfFesrkr  113 (299)
T KOG2971|consen   45 KWKNKERVLVLSSRGISFRTRHLMKDISSLL-PHSKKDSKLDRKKKL----------GVLNELAELKNCNSCLFFESRKR  113 (299)
T ss_pred             ccccceeEEEEecCCchHHHHHHHHHHHHhc-ccccccchhhhcchH----------HHHHHHHHHhcCCeEEEEEeecc
Confidence            4679999999999999999999999999998 99876543    332          89999999999999999999999


Q ss_pred             CCCceEEEEccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCcc
Q 024240           99 RPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENL  178 (270)
Q Consensus        99 rp~~L~igR~~~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i  178 (270)
                      +..||||++.++||+   ++|.|+|.|||+|++++++  +++||||+|+|+.. ||+.|||+++|+||+++|+.|..|+.
T Consensus       114 ~DlYlWm~~~p~GpS---vkFlv~n~hTM~ElkmtgN--~lkgsrplLsFd~~-Fd~~pHlkl~Kell~q~fgiP~~hrk  187 (299)
T KOG2971|consen  114 KDLYLWMSNSPNGPS---VKFLVHNVHTMAELKMTGN--CLKGSRPLLSFDKA-FDELPHLKLLKELLEQIFGIPKHHRK  187 (299)
T ss_pred             CceeEEEecCCCCCc---eEEehhhhhhHHHhCCccc--cccCCcceeecccc-cccchHHHHHHHHHHHHcCCCCCCcc
Confidence            999999999999997   7999999999999999842  49999999999996 99999999999999999999999999


Q ss_pred             ccCCCcEEEEEEEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeEEEEeeeC--------------CCHHHHHHHH
Q 024240          179 NLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRL--------------PNESLRKEAM  244 (270)
Q Consensus       179 ~l~~id~vi~ft~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~~~r~~~--------------~~~~~~k~A~  244 (270)
                      +.|++|||++||++|+. ||||+|||...      ....|+||||||+|+++++..              .|++..+++.
T Consensus       188 Skpf~Dhvf~Fsi~D~~-IWfRnyqI~~~------ed~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~  260 (299)
T KOG2971|consen  188 SKPFVDHVFTFSILDGK-IWFRNYQISEE------EDKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVI  260 (299)
T ss_pred             cCCccceEEEEEEecCe-EEEEEeEeccc------cCcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHH
Confidence            99999999999999997 99999999632      237899999999999999874              5888888888


Q ss_pred             hhhhh
Q 024240          245 KTAKD  249 (270)
Q Consensus       245 k~pk~  249 (270)
                      |+..+
T Consensus       261 k~~~a  265 (299)
T KOG2971|consen  261 KKQAA  265 (299)
T ss_pred             HHHHH
Confidence            76654

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.4e-44  Score=311.07  Aligned_cols=205  Identities=17%  Similarity=0.249  Sum_probs=185.0

Q ss_pred             CCcEEEEEeCCCCCHhHHHHHHHHHhcccccceecc----ccCCCcCcCCCCCcchhhhhhccCCCcEEEEeeeCCCCCC
Q 024240           26 TGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYT----RKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPD  101 (270)
Q Consensus        26 n~K~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~----Kkn~~i~pFe~~~~~~le~la~k~dcslf~f~s~~KKrp~  101 (270)
                      +++++|++++|++|.+.||||+||..|+ ||+++..    |+|-          .+|+++|+.++|+.++|++++|....
T Consensus        29 ~kq~~lilSsRGvsyr~RHL~~Dls~l~-phskke~KlD~kk~l----------~qLnelaelynCnn~lFFesrkr~Dl   97 (283)
T COG5154          29 PKQTSLILSSRGVSYRIRHLMKDLSRLV-PHSKKEQKLDMKKNL----------GQLNELAELYNCNNMLFFESRKRSDL   97 (283)
T ss_pred             ccceEEEEecCCchHHHHHHHHHHHHhC-cccccccccchhhhH----------HHHHHHHHHhcCCceEEEeecccccc
Confidence            6899999999999999999999999998 9987543    4553          89999999999999999999999999


Q ss_pred             ceEEEEccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccC
Q 024240          102 NLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLA  181 (270)
Q Consensus       102 ~L~igR~~~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~  181 (270)
                      |||++|.+|||+   ++|.++|.++|+++.+++  ++++||+|+|.|+.+ ||+.|||+.+|++|.+.|+.|.....+.|
T Consensus        98 yl~~ar~pnGpt---vkF~~~NlhTMdelNftg--N~lKgsrpvLsFdk~-Fe~~pHlk~~Kell~h~F~ip~~arrSkp  171 (283)
T COG5154          98 YLMGARIPNGPT---VKFRMHNLHTMDELNFTG--NSLKGSRPVLSFDKE-FEDIPHLKYAKELLEHIFGIPKGARRSKP  171 (283)
T ss_pred             eeeeccCCCCCe---EEEEEeccchHhhcCCcc--ccccCCcceEeeccc-cccchHHHHHHHHHHHhccCCCccccccc
Confidence            999999999998   799999999999999984  259999999999997 99999999999999999999999999999


Q ss_pred             CCcEEEEEEEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeEEEEeee--------------CCCHHHHHHHHhhh
Q 024240          182 GLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHR--------------LPNESLRKEAMKTA  247 (270)
Q Consensus       182 ~id~vi~ft~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~~~r~~--------------~~~~~~~k~A~k~p  247 (270)
                      ++|||++|+++|++ ||+|+|.|.- ...++...|.|+||||||+|+++.+-              +.|+.+.++|++++
T Consensus       172 fiD~v~~f~i~Dgk-IWvR~YeI~r-e~ed~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vra~ir~q  249 (283)
T COG5154         172 FIDKVLCFFILDGK-IWVRCYEIGR-ENEDKSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRNQ  249 (283)
T ss_pred             chhheEEEEEecCe-EEEEEEeecc-ccccccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHHHHHHHH
Confidence            99999999999998 9999999962 34455566999999999999998764              36889999999865


Q ss_pred             hh
Q 024240          248 KD  249 (270)
Q Consensus       248 k~  249 (270)
                      .+
T Consensus       250 aa  251 (283)
T COG5154         250 AA  251 (283)
T ss_pred             HH
Confidence            44

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=2.2e-42  Score=299.12  Aligned_cols=185  Identities=33%  Similarity=0.534  Sum_probs=72.1

Q ss_pred             EEeCCCCCHhHHHHHHHHHhcccccceeccccCC-CcCcCCCCCcchhhhhhccCCCcEEEEeeeCCCCCCceEEEEccC
Q 024240           32 ILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNE-NIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYD  110 (270)
Q Consensus        32 ~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~-~i~pFe~~~~~~le~la~k~dcslf~f~s~~KKrp~~L~igR~~~  110 (270)
                      |++|+++|+.++++++||+.|++|+|++++|++. .+.       +.+|+.+.+++|++++|++++| +|++|||||+|+
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~-------~~~~~~~~~~~~~l~~~~~~~k-~p~~L~i~r~~~   72 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLK-------DLLEFAKQKNCTSLFVFGEHKK-NPNNLWIGRLPN   72 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HH-------HHHHHHHHTTEEEEEEEEEETT-EEEEEEEEE-SS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchH-------HHHHHHHHCCCCEEEEEEEeCC-CcceEEEEecCC
Confidence            6789999999999999999999899999987764 232       4566666666668888988876 999999999999


Q ss_pred             CceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCCCcEEEEEE
Q 024240          111 HHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCT  190 (270)
Q Consensus       111 g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~id~vi~ft  190 (270)
                      ||++   +|+|++|++++|++....  ...|++|+|+|+|..|+.+++++++++||+|+|+++.++.++++++|||++|+
T Consensus        73 gptl---~f~I~~~~~~~~~~~~~~--~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~  147 (191)
T PF04427_consen   73 GPTL---EFSIENYKLMKDIKSSSK--RPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFS  147 (191)
T ss_dssp             --EE---EEEEEEEE-HHHHT---------S---EEEEE-----------------------------------------
T ss_pred             CCCE---EEEEEeEEEhhHhccccc--CCCCCCeEEEEEecccccccccccccccccccccccccccccccccccccccc
Confidence            9996   999999999999986521  14589999999998777779999999999999999999999999999999999


Q ss_pred             EecCCeEEEEEEEEEeecCCCCC-----CCeeEEeeccceeEEEEee
Q 024240          191 AVSSNRVFFTHCALRLKKSGTIV-----PRMELVEVGPCMDFVVRRH  232 (270)
Q Consensus       191 ~~d~~~I~~R~Y~I~~~~sg~~~-----p~v~L~EiGPr~dl~~~r~  232 (270)
                      +.++..|||||| |  .+++++.     |.++|+||||||+|+++|+
T Consensus       148 ~~~d~~I~fR~Y-i--~~~~~~~~~~~~~~v~L~EiGPr~~l~l~kI  191 (191)
T PF04427_consen  148 NQRDFVIFFRHY-I--FKSGSKNPKKLLPRVELVEIGPRFTLKLRKI  191 (191)
T ss_dssp             -----------------------------------------------
T ss_pred             cccccccccccc-c--cccccccccccccccccccccccccccccCC
Confidence            987756999999 7  4445554     4489999999999999985

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>smart00879 Brix Brix domain

Probab=100.00  E-value=1.4e-36  Score=259.25  Aligned_cols=179  Identities=30%  Similarity=0.372  Sum_probs=149.9

Q ss_pred             EEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhcc-CCCcEEEEeeeCCCCCCceEEEEcc
Q 024240           31 LILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLK-TDCSIFIYGSTSKKRPDNLVIGRTY  109 (270)
Q Consensus        31 L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k-~dcslf~f~s~~KKrp~~L~igR~~  109 (270)
                      ||++|+++|+.++++++||+.++.|+++...++++ +     .  +.+|+++.+ .+|+++++++++|++|++||+||+|
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~-~-----~--~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~   72 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNK-L-----N--ELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLP   72 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCcc-H-----H--HHHHHHHHcCCccEEEEecccCCCCCceEEEEECC
Confidence            58899999999999999999999444443344443 3     1  577777777 6668888888889999999999999


Q ss_pred             CCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCCCcEEEEE
Q 024240          110 DHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVC  189 (270)
Q Consensus       110 ~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~id~vi~f  189 (270)
                      +||++||.+++|..++.+..+...++   ..+++|+|+|+|..|+..   ++++++|+++|+++.++.++++++|||++|
T Consensus        73 ~gp~l~f~i~~v~~~~~~~~~~~~~~---~~~~~P~li~~~~~~~~~---~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f  146 (180)
T smart00879       73 NGPTLDFKILNVSLRKELKGFKTGNC---LTGSRPLLIFNNFFTELG---KLIKELFQDLFPGPPEHKKSLPGLRRVVTF  146 (180)
T ss_pred             CCCcEEEEEECcccHhhhhhhhcCCC---cCCCccEEEECCCCCchH---HHHHHHHHHHCCCCCccccccCCCCEEEEE
Confidence            99999888877777777666643444   889999999999644433   789999999999999999999999999999


Q ss_pred             EEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeE
Q 024240          190 TAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDF  227 (270)
Q Consensus       190 t~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl  227 (270)
                      ++.++. ||||||+|..   +.+.++++|.||||||+|
T Consensus       147 ~~~~~~-I~~R~y~i~~---~~~~~~v~l~eiGPr~~l  180 (180)
T smart00879      147 SNQDDY-IFFRHYRIKF---GKKKPRVELQEIGPRFTL  180 (180)
T ss_pred             EecCCE-EEEEEEEEEc---cCCCCceEEEEecCCccC
Confidence            999885 9999999975   567888999999999986

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=3.2e-27  Score=218.21  Aligned_cols=189  Identities=13%  Similarity=0.187  Sum_probs=152.1

Q ss_pred             CccCCCChhhhhHHHHhCCccccCCcEEEEEeCCCCCHhHHHHHHHHHhcccccc-eec--cccCCCcCcCCCCCcchhh
Q 024240            3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSA-IRY--TRKNENIRPFESGGETSLE   79 (270)
Q Consensus         3 ~~~k~kt~~~kr~l~~repk~~en~K~~L~l~g~~~s~~~~~ll~DL~~L~kP~a-~~~--~Kkn~~i~pFe~~~~~~le   79 (270)
                      +.+++|+++++- ....+....++ ..++++..+-+...+++|-.||+.||.||+ .++  .|+|. |++|..+      
T Consensus         3 k~r~kK~~~aq~-~~~~e~~i~~~-ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~-iKDfv~~------   73 (405)
T KOG2963|consen    3 KRRHKKRTHAQF-TPEQEIEIAKS-PHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNK-LKDFVVM------   73 (405)
T ss_pred             cccchhhhhhhc-CccchhhcccC-ceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhh-hhhHHhh------
Confidence            344555444332 22333333333 344555555667899999999999999995 555  58897 9999998      


Q ss_pred             hhhccCCCcEEEEeeeCCCCCCceEEEEccCCceeeeEEEEeeceeecccccCC----CCCCCCCCCccEEEEeCCCCCC
Q 024240           80 FFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYD----KKLAPRVGSKPFICFVGEGFES  155 (270)
Q Consensus        80 ~la~k~dcslf~f~s~~KKrp~~L~igR~~~g~~LDm~ef~V~n~~~~~~~~~~----~~~~~~~gskPllvF~g~~F~~  155 (270)
                        |+..|+++|++.|.+.. ..+|.++|+|.||+|   .|.|..|....|....    .+.+-...+.||||+||  |++
T Consensus        74 --~gplGVTH~l~lskt~~-nlslki~R~PqGPTL---tFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNg--Fg~  145 (405)
T KOG2963|consen   74 --SGPLGVTHLLMLSKTET-NLSLKIARTPQGPTL---TFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNG--FGT  145 (405)
T ss_pred             --cccccceEEEEEecccC-ceeEEEEecCCCCce---EEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEcc--CCC
Confidence              99999998888887655 668999999999995   9999999998888542    34444788999999999  998


Q ss_pred             h--HHHHHHHHHHHhhCCCCCCCccccCCCcEEEEEEEe-cCCeEEEEEEEEEeec
Q 024240          156 V--EELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAV-SSNRVFFTHCALRLKK  208 (270)
Q Consensus       156 ~--~~l~~lK~ll~d~F~~~~~~~i~l~~id~vi~ft~~-d~~~I~~R~Y~I~~~~  208 (270)
                      +  +|++++-.||++||++.+++.++|..|+||+.|+|. |++.|.||||.|...+
T Consensus       146 ~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllinyn~dt~eIdmRHysI~vvp  201 (405)
T KOG2963|consen  146 SGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLINYNRDTGEIDMRHYSIRVVP  201 (405)
T ss_pred             CcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEecCCCCCeeeeeeeEEEEEe
Confidence            6  899999999999999999999999999999999995 6677999999998764

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=99.70  E-value=7.9e-16  Score=137.28  Aligned_cols=181  Identities=19%  Similarity=0.162  Sum_probs=152.1

Q ss_pred             cEEEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCC-cEEEEeeeCCCCCCceEEE
Q 024240           28 KKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDC-SIFIYGSTSKKRPDNLVIG  106 (270)
Q Consensus        28 K~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dc-slf~f~s~~KKrp~~L~ig  106 (270)
                      -++|+--|+.-|..+.+.+++|.-+. |+|.++++-|..      +  .+|-+-|..+|. .++++.+|+ =.|..|+++
T Consensus        83 PKimvTTSR~PSsrL~~FaKelkLvf-PNaqr~nRG~~~------~--~~lv~a~ra~~~Td~iivHEhR-G~PdgL~vs  152 (290)
T KOG2781|consen   83 PKIMVTTSRDPSSRLKMFAKELKLVF-PNAQRLNRGNYV------V--GELVDAARANGVTDLIIVHEHR-GIPDGLVVS  152 (290)
T ss_pred             CcEEEEeCCCchHHHHHHHHhheEec-cChhhhccccee------H--HHHHHHHHHCCCceEEEEeccC-CCCCceEEE
Confidence            35688889999999999999999886 999999988762      2  788899999999 677888874 559999999


Q ss_pred             EccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCCCcEE
Q 024240          107 RTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHA  186 (270)
Q Consensus       107 R~~~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~id~v  186 (270)
                      -+|=||+   .-|.+.|+..=.|+...+.   ..-.+|-|+|++  |.+. -=++++++|-.+|++|..+      -.||
T Consensus       153 hlPfGPT---a~Fsl~nvVmRhdip~~G~---msE~~phlIfdN--f~t~-lG~Rv~~iLkhLFP~pk~d------s~Rv  217 (290)
T KOG2781|consen  153 HLPFGPT---AFFSLHNVVMRHDIPDIGT---MSEQKPHLIFDN--FTTK-LGKRVKTILKHLFPVPKDD------SKRV  217 (290)
T ss_pred             ecCCCCc---eEeeeeeeeeccccccccc---ccccCceEEecc--ccch-HHHHHHHHHHHhCCCCcCC------cccE
Confidence            9999998   5999999999999976554   566699999999  9764 3458999999999987654      5899


Q ss_pred             EEEEEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeEEEEeeeCCCHH
Q 024240          187 YVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNES  238 (270)
Q Consensus       187 i~ft~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~~~r~~~~~~~  238 (270)
                      |+|...+|- |.||||.+.-.  +  -..++|.|+||||+|.+=-+.+..-|
T Consensus       218 vtf~N~~Dy-IsFRhhvy~~~--~--~k~vel~evGPRfelklyeIrlGTlE  264 (290)
T KOG2781|consen  218 VTFANRNDY-ISFRHHVYKKT--D--GKEVELTEVGPRFELKLYEIRLGTLE  264 (290)
T ss_pred             EEEecCCce-EEEEEEEEecC--C--CceEEEeeccccceeeeeeeeeccee
Confidence            999999997 99999988521  1  13589999999999999988876655

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=99.51  E-value=4.2e-13  Score=121.21  Aligned_cols=180  Identities=16%  Similarity=0.193  Sum_probs=141.7

Q ss_pred             cEEEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCCcEE-EEeeeCCCCCCceEEE
Q 024240           28 KKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIF-IYGSTSKKRPDNLVIG  106 (270)
Q Consensus        28 K~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf-~f~s~~KKrp~~L~ig  106 (270)
                      -++||--....+.....++..|..+. ||+.-..+.|..      +  .++-+.|.+.+.+-+ ++.+.+ |.|+.|.|+
T Consensus        97 pKvlITt~~~~~~~t~~~~~eL~~ii-PNs~~~~R~~~~------v--k~i~~~a~~~eftdlvvV~edR-kk~n~L~ii  166 (302)
T KOG2780|consen   97 PKVLITTSKNPKRTTYKFASELLDII-PNSTVKKRDNYT------V--KSIVEIAIKREFTDLVVVNEDR-KKPNGLKII  166 (302)
T ss_pred             ccEEEEcCCCCcccHHHHHHHHHHhC-CCceEEecCCch------H--HHHHHHHHHhcCCceEEEecCc-CCccceEEE
Confidence            46677777788889999999999997 997544343532      2  788888999999544 555554 559999999


Q ss_pred             EccCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCCCcEE
Q 024240          107 RTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHA  186 (270)
Q Consensus       107 R~~~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~id~v  186 (270)
                      -.|+||+   +.|.+.+|..-+|++.-+.   .-+..|=|++++  |.+.-.+ .+..||+.+|+-++.    .. -++|
T Consensus       167 hlP~GPT---~~Fkls~~~~~kdi~k~g~---~t~h~PElIlNN--FtTrlG~-~v~r~f~sLfp~~p~----f~-gRrv  232 (302)
T KOG2780|consen  167 HLPNGPT---AYFKLSNVVLTKDIKKHGR---PTSHIPELILNN--FTTRLGM-TVGRLFASLFPHDPQ----FT-GRRV  232 (302)
T ss_pred             ecCCCCc---eEEEeecccchhhhhhcCC---cccccchhhhhc--ccchhhH-HHHHHHHHhCCCCcc----cc-ceeE
Confidence            9999998   6999999999999876543   456688899998  9775444 688999999987652    12 2789


Q ss_pred             EEEEEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeEEEEeeeCC
Q 024240          187 YVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLP  235 (270)
Q Consensus       187 i~ft~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~~~r~~~~  235 (270)
                      +.|+..-| -|+||||++..+..+   -.+-|.|+||||+|.+++.|..
T Consensus       233 vtFhnQrD-~IfFRhhRY~Fkee~---~kvglqElGPrfTLrL~~lq~G  277 (302)
T KOG2780|consen  233 VTFHNQRD-YIFFRHHRYEFKEEE---IKVGLQELGPRFTLRLRRLQKG  277 (302)
T ss_pred             EEEEecCc-eEEEEEEEEeecccc---cccchhhcCCceeeeehhhhhc
Confidence            99988666 499999999988755   3467999999999999998853

>PRK03972 ribosomal biogenesis protein; Validated

Probab=98.98  E-value=4.4e-08  Score=86.76  Aligned_cols=191  Identities=14%  Similarity=0.071  Sum_probs=137.8

Q ss_pred             EEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCCc-EEEEeeeCCCCCCceEEEEc
Q 024240           30 TLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCS-IFIYGSTSKKRPDNLVIGRT  108 (270)
Q Consensus        30 ~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcs-lf~f~s~~KKrp~~L~igR~  108 (270)
                      +||=.|+..|+.++++++||..+. |++..+++.+..+        +.|-+.|..+|.+ ++++.++ ++.|+.|++.-+
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~-Pns~~i~RGk~~l--------kel~~~A~~~g~TdLIVV~E~-rg~P~~L~i~hL   71 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVF-PNSLYLTRGKKTI--------QDLLMEAYDRGYERLLIINVW-KGNPLKMTFIKV   71 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhC-CCCEEEecCCccH--------HHHHHHHHHCCCCeEEEEecC-CCcCCeEEEEcC
Confidence            456678899999999999999998 9999887655322        5666678788885 5555555 778999999999


Q ss_pred             cCCceeeeEEEEeeceeeccccc--CCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCc--cccC---
Q 024240          109 YDHHIYDLVEVGVENFKPLNSFI--YDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIEN--LNLA---  181 (270)
Q Consensus       109 ~~g~~LDm~ef~V~n~~~~~~~~--~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~--i~l~---  181 (270)
                      ++||--....|.+.|+..-+|+.  ..+.   .....|++|..+  |..++.+...-..+..-++.+-+..  .++.   
T Consensus        72 P~gP~GPTa~FkLsnV~l~~ei~~~~~~~---~s~~~p~iItts--~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~  146 (208)
T PRK03972         72 GPEDWGYLGYLYLHGIKLQREMGFRNLRP---IREDMPLVITTA--KRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIA  146 (208)
T ss_pred             CCCCCCceEEEEEccEEEHHHcccCCCCC---ccccccEEEEcC--CCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHH
Confidence            86663333799999999999993  3433   567899999887  8888856444444666677765654  4533   


Q ss_pred             ---CCcEEEEEEEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeEEEEeeeCCCHHHHHHHHh
Q 024240          182 ---GLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMK  245 (270)
Q Consensus       182 ---~id~vi~ft~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~~~r~~~~~~~~~k~A~k  245 (270)
                         +.|.|+++.----. .-+-.|+....+         -..+||.+-..+=+..-.-.=.||+|+.
T Consensus       147 ~~~~~d~vLVV~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (208)
T PRK03972        147 DKYNTDVLGVIERHPRG-MAVNFYRLDVTK---------ERPVGPLIFVKIWIMEDGRRWDYKEALG  203 (208)
T ss_pred             hhhcCceEEEEecCCCc-eEEEEEEecccc---------ccccCCcEEEEEEEeccCcccchhhhhc
Confidence               44888887554444 677778775432         2567999988877776555556777763

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=98.67  E-value=1.4e-06  Score=76.47  Aligned_cols=182  Identities=15%  Similarity=0.140  Sum_probs=126.7

Q ss_pred             EEEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCCcEEEEeeeCCCCCCceEEEEc
Q 024240           29 KTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRT  108 (270)
Q Consensus        29 ~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~f~s~~KKrp~~L~igR~  108 (270)
                      ++|+-.|++-|.+++++.+||.... |++....+-+.++        ..+-+-|-..+.+-+++..-.+..|..|++--.
T Consensus         3 ~~liTTSRkPS~Rtr~Fak~L~~~l-p~~~~~~rg~~~~--------~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~   73 (191)
T COG2136           3 KMLLTTSRKPSRRTRSFAKDLSRVL-PNAYFLRRGKKSI--------IELSEEAIARGATDLLIVGERRGNPARLTFYDL   73 (191)
T ss_pred             cEEEEecCCccHHHHHHHHHHHHhC-CcceEEecCccch--------hHHHHHHHhcCCceEEEEEEecCCCcEEEEEEe
Confidence            5688899999999999999999998 9988775422212        566677888888655555545777999999877


Q ss_pred             -cCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCCCcEEE
Q 024240          109 -YDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAY  187 (270)
Q Consensus       109 -~~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~id~vi  187 (270)
                       +.|+.   +-|.+.++++..++...+.  ....+-|.+++++  |.+.-+++...++|.++-....+.   -+..++-.
T Consensus        74 ~~~~~~---~~f~l~~v~l~re~~~~~~--~~~~~~~~~I~~~--~~~~~g~~~~~~~~~~~~~~~f~~---~~~~~~~~  143 (191)
T COG2136          74 EPEGLT---FSFKLSGVKLRREIPVLGP--KSRLHGPELIFNN--FTTLLGFLKVAEAFSELLLVKFVP---NPAWEHEL  143 (191)
T ss_pred             cCCCce---EEEEEecceEEEeccccCC--cccCCCCceeeec--ccccccchhhHHHHHhhccccccc---Ccccceee
Confidence             77776   5899999999999976532  1356789999998  988888889999999993221111   11233333


Q ss_pred             EEEEe-cCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeEEEEeeeC
Q 024240          188 VCTAV-SSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRL  234 (270)
Q Consensus       188 ~ft~~-d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~~~r~~~  234 (270)
                      +++.. .+.-+.+|.+.-....     ..+.+.|+||+|.+.+-|.+.
T Consensus       144 v~~~~~~~~f~~~~~~~~~~~~-----~~~~~~~vgp~~~~r~~~~~~  186 (191)
T COG2136         144 VATGANKGDFKSLRRHRRVFEE-----DGIGLEEVGPRLTLRLWRMED  186 (191)
T ss_pred             eeeccccceEEEEEeeeeEeee-----eeeeEEEeCceeeeehhhhhh
Confidence            33322 2222444443322211     347799999999999888754

>PRK00933 ribosomal biogenesis protein; Validated

Probab=94.43  E-value=1.7  Score=37.42  Aligned_cols=114  Identities=15%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             EEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCC-cEEEEeeeCCCCCCceEEEEcc
Q 024240           31 LILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDC-SIFIYGSTSKKRPDNLVIGRTY  109 (270)
Q Consensus        31 L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dc-slf~f~s~~KKrp~~L~igR~~  109 (270)
                      +|=.|++.|+.++++.++|....  ++....++ .          .+++++++..+. .++++.++ |+.|+.|.+-+.-
T Consensus         2 IITTSrkPs~~t~~fAkeLa~~l--n~~yv~Rg-k----------~Sl~eL~~~~~~~~llVV~E~-kg~P~~L~iyd~~   67 (165)
T PRK00933          2 IITTSRKPSQRTRSLVKDLARFL--NCKYVNRG-K----------MSLQELLEECEARYLLIIGEY-KGNPGALKFYDVE   67 (165)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh--CCEEEccC-C----------ccHHHHHHHhccCcEEEEECC-CCCCceEEEEECC
Confidence            34457899999999999999886  55444443 3          577777765445 45556665 7889999999888


Q ss_pred             CCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCC
Q 024240          110 DHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRG  172 (270)
Q Consensus       110 ~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~  172 (270)
                      +.+.+- +-++| .++  .+...    ....+.+|.+.=.+.      .-..+.++|..+...
T Consensus        68 ~~~~~~-~~~~v-~~~--~~~~~----~~~~~~~p~~~~~~~------~~~~~~e~f~~~l~~  116 (165)
T PRK00933         68 GNKLLS-YRLSV-KLQ--REISG----PVFKNRRPIKSAFDV------GGDELAELFDYFLFY  116 (165)
T ss_pred             CCEEEE-EEEEe-eee--cccCc----ceeecCCCcccchhh------HHHHHHHHHHHHHhh
Confidence            788763 34444 221  22222    136777786543332      134566777776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.65
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	97.46

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.65  E-value=1.1e-15  Score=135.02  Aligned_cols=170  Identities=12%  Similarity=0.092  Sum_probs=128.9

Q ss_pred             CcEEEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCCcEEEEeeeCCCCCCceEEE
Q 024240           27 GKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIG  106 (270)
Q Consensus        27 ~K~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~f~s~~KKrp~~L~ig  106 (270)
                      ..++||..+++.|+.++++++||..+. |++.++++.+..+        ..|.+.|..++|+-+++...+++.|++||+.
T Consensus        33 ~pKvLITTSr~pS~r~r~fakeL~~~l-Pns~~i~Rgk~sL--------keL~e~a~~~~~tdlivV~e~rg~p~~L~~~  103 (217)
T 2cxh_A           33 GYRILVTTSRRPSPRIRSFVKDLSATI-PGAFRFTRGHYSM--------EELAREAIIRGADRIVVVGERRGNPGIIRVY  103 (217)
T ss_dssp             CCEEEEEESSSCCHHHHHHHHHHHTTS-TTEEECCCTTCCH--------HHHHHHHHHTTEEEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHHHC-CCCEEeecCCcCH--------HHHHHHHHhCCCCEEEEEEecCCCCcEEEEE
Confidence            567899999999999999999999998 9998887644323        7888899999997665555556679999999


Q ss_pred             EccCCceee-eEEEEeeceeecccccCCC-CCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCC-C
Q 024240          107 RTYDHHIYD-LVEVGVENFKPLNSFIYDK-KLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG-L  183 (270)
Q Consensus       107 R~~~g~~LD-m~ef~V~n~~~~~~~~~~~-~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~-i  183 (270)
                      ..|+|.... ++.|.|.|+++++|++..+ |   ..+++|.|+ ++  |++. +..++++||+++|+.|..+.-+..| .
T Consensus       104 hlP~G~~~P~Ta~F~I~nv~l~~ei~~~g~~---~~~~rP~L~-~n--F~t~-~g~~i~~~f~~lFp~P~~~~~~~~~~~  176 (217)
T 2cxh_A          104 AVEGPERPDNIVSFIVKGVSLSRERRWGLPS---LRGGEVLVA-RP--LDSG-VAVEFADAFVIAFHARLKPPEAAGYVE  176 (217)
T ss_dssp             ECCSSSCCEEEEEEEEEEEECHHHHTCCCCC---CCSCCEEEE-EE--SSSS-THHHHHHHHHHHHCCBSSCCSSSCEEE
T ss_pred             ECCCCCCCCcEEEEEEeeEEehhhhccCCCc---cCCCCceEE-ee--ecCc-hHHHHHHHHHHHcCCCCCChhhhcccc
Confidence            999992221 6899999999999999764 5   789999999 55  9886 7899999999999987763222221 2


Q ss_pred             cEEEEEEEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeEE
Q 024240          184 DHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFV  228 (270)
Q Consensus       184 d~vi~ft~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl~  228 (270)
                      |-++.|   ++....+.-|     +        ....+||.+-..
T Consensus       177 d~~~~i---~~~~~~v~f~-----~--------~~~~~Gp~i~i~  205 (217)
T 2cxh_A          177 AVIESL---DARTVAVTFR-----Y--------GGAPVGPMLRLG  205 (217)
T ss_dssp             EEEEEE---ETTEEEEEEE-----C--------SSSEEEEEEEEE
T ss_pred             cEEEEE---cCCcEEEEEe-----c--------CCCccCcEEEEc
Confidence            666666   3442333333     1        346789987554

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=97.46  E-value=0.0019  Score=53.77  Aligned_cols=123  Identities=14%  Similarity=0.001  Sum_probs=84.3

Q ss_pred             EEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCCcEEEEeeeCCCCCCceEEEEcc
Q 024240           30 TLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTY  109 (270)
Q Consensus        30 ~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~f~s~~KKrp~~L~igR~~  109 (270)
                      ++|=-|++.|+.+++..++|....  ++..+++.+           .+|+++++.....++++.++++ .|+.|.+.-.|
T Consensus         2 ilITTSr~Ps~~l~~fakeLa~~l--n~~~v~Rgk-----------~sl~~L~~~~~~~~iVV~e~rg-~P~~l~i~hlp   67 (156)
T 1w94_A            2 MLLTTSRKPSQRTRSFSQRLSRIM--GWRYINRGK-----------MSLRDVLIEARGPVAVVSERHG-NPARITFLDER   67 (156)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHH--TCEECCCTT-----------CCHHHHHHHHSSCEEEEEEETT-EEEEEEEECTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh--CCEEEeeCC-----------cCHHHHHHhcCCCEEEEEcCCC-CCCeEEEEeCC
Confidence            467778999999999999999886  777776654           4667776655556888888754 59999999999


Q ss_pred             CCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCCCcEEEEE
Q 024240          110 DHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVC  189 (270)
Q Consensus       110 ~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~id~vi~f  189 (270)
                      +||+   +.|.+ |...-+|....+       ... +++.++    .+.+    +.|.++|+-+.+..   . -+.|+.|
T Consensus        68 ~gpt---~~f~~-nv~l~~~~~~~~-------~~~-v~~~~~----~~~~----~~l~~~~~~~~~~~---~-~~~~~~i  123 (156)
T 1w94_A           68 GGER---GYILF-NPSFEMKKPELA-------DKA-VRVSSC----PPGS----EGLCNLMGLEVDES---S-SRDAWSI  123 (156)
T ss_dssp             SCEE---EEEEE-EEEECSSCCCCS-------SCC-CEESCC----CTTC----HHHHHHHTCEECCS---C-CTTEEEE
T ss_pred             CCCE---EEEEE-ceEEcccCcccC-------Cce-EEEecC----ChhH----HHHHHHHCCCccCC---C-CceEEEE
Confidence            9998   57777 877777765322       111 444442    2334    56667776544321   1 1567777


Q ss_pred             E
Q 024240          190 T  190 (270)
Q Consensus       190 t  190 (270)
                      .
T Consensus       124 ~  124 (156)
T 1w94_A          124 R  124 (156)
T ss_dssp             E
T ss_pred             E
Confidence            5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	99.5
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	97.91

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.50  E-value=8.5e-14  Score=117.55  Aligned_cols=167  Identities=12%  Similarity=0.081  Sum_probs=120.2

Q ss_pred             EEEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCCcEEEEeeeCCCCCCceEEEEc
Q 024240           29 KTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRT  108 (270)
Q Consensus        29 ~~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~f~s~~KKrp~~L~igR~  108 (270)
                      ++||-.+++.|+.++++++||..++ ||+....+++..+        ..|.++|..+||+.+++.+..++.| ++|+..+
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v~-Pns~~~~R~k~~l--------k~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~l   72 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSATI-PGAFRFTRGHYSM--------EELAREAIIRGADRIVVVGERRGNP-GIIRVYA   72 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTTS-TTEEECCCTTCCH--------HHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhC-CCCEEeecCCCcH--------HHHHHHHHHCCCCeEEEEEccCCCC-cEEEEEC
Confidence            6799999999999999999999998 9998775543324        7788889999996655555557778 6999999


Q ss_pred             cCCce--eeeEEEEeeceeecccccCC-CCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCCCcE
Q 024240          109 YDHHI--YDLVEVGVENFKPLNSFIYD-KKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDH  185 (270)
Q Consensus       109 ~~g~~--LDm~ef~V~n~~~~~~~~~~-~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~id~  185 (270)
                      |+||+  ...+.|.|.|++..+|.+.. .+.+......|-++|++  |.+ .--.++-.+|...|+.|...     | ++
T Consensus        73 P~GP~~~~~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~lilnn--f~t-~Lg~~~~~~f~~lf~~p~~~-----~-~~  143 (180)
T d2cxha1          73 VEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSG--VAV-EFADAFVIAFHARLKPPEAA-----G-YV  143 (180)
T ss_dssp             CCSSSCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSSS--THH-HHHHHHHHHHCCBSSCCSSS-----C-EE
T ss_pred             CCCCCCccceEEEEEEEEEEehhhccccCCCCCCccccchhHhcc--cch-HHHHHHHHHHHhhCCCchhc-----C-cE
Confidence            99992  11158999999999998653 11112344578888888  743 21234556666777543332     2 56


Q ss_pred             EEEEEEecCCeEEEEEEEEEeecCCCCCCCeeEEeeccceeE
Q 024240          186 AYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDF  227 (270)
Q Consensus       186 vi~ft~~d~~~I~~R~Y~I~~~~sg~~~p~v~L~EiGPr~dl  227 (270)
                      |+.|...+|- |++|+|.-.            -.++||++-+
T Consensus       144 vvt~~n~~d~-if~~~~~~~------------~~~~GP~~rl  172 (180)
T d2cxha1         144 EAVIESLDAR-TVAVTFRYG------------GAPVGPMLRL  172 (180)
T ss_dssp             EEEEEEEETT-EEEEEEECS------------SSEEEEEEEE
T ss_pred             EEEEEecCCe-EEEEEEecC------------CCCCCCEEEe
Confidence            8888888887 888888731            2578998654

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.91  E-value=4.3e-06  Score=67.88  Aligned_cols=134  Identities=14%  Similarity=0.030  Sum_probs=95.0

Q ss_pred             EEEEeCCCCCHhHHHHHHHHHhcccccceeccccCCCcCcCCCCCcchhhhhhccCCCcEEEEeeeCCCCCCceEEEEcc
Q 024240           30 TLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTY  109 (270)
Q Consensus        30 ~L~l~g~~~s~~~~~ll~DL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~f~s~~KKrp~~L~igR~~  109 (270)
                      +||=.|+..|+.++++++||..+. |++ .+++.+           ..++++++..-..++++.+++ +.|+.|++ =.+
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~-P~~-~~~Rgk-----------~~lkelv~~~~tdlivv~E~r-g~P~~l~i-h~p   65 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIM-GWR-YINRGK-----------MSLRDVLIEARGPVAVVSERH-GNPARITF-LDE   65 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHH-TCE-ECCCTT-----------CCHHHHHHHHSSCEEEEEEET-TEEEEEEE-ECT
T ss_pred             CEEECCCCccHHHHHHHHHHHHhC-CCe-EEEcCC-----------CcHHHHHHhCCCcEEEEECCC-CCCceEEE-EeC
Confidence            367778999999999999999998 875 566543           345555544334688888875 45999998 899


Q ss_pred             CCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChHHHHHHHHHHHhhCCCCCCCccccCCCcEEEEE
Q 024240          110 DHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVC  189 (270)
Q Consensus       110 ~g~~LDm~ef~V~n~~~~~~~~~~~~~~~~~gskPllvF~g~~F~~~~~l~~lK~ll~d~F~~~~~~~i~l~~id~vi~f  189 (270)
                      +||+   .-|.+.+.+.-+|             +|=+++++  |.+.... .+-++|..+|+-+...    .+-+.|+.|
T Consensus        66 ~gpt---~~f~l~~v~l~~e-------------~p~li~~~--f~t~lg~-~v~~~L~~lf~~~~~~----~~~~~~itf  122 (154)
T d1w94a1          66 RGGE---RGYILFNPSFEMK-------------KPELADKA--VRVSSCP-PGSEGLCNLMGLEVDE----SSSRDAWSI  122 (154)
T ss_dssp             TSCE---EEEEEEEEEECSS-------------CCCCSSCC--CEESCCC-TTCHHHHHHHTCEECC----SCCTTEEEE
T ss_pred             CCCc---EEEEEeeEEcccc-------------CCcCcccc--cccccch-hHHHHHHHHcCCChhh----cceeeEEEE
Confidence            9997   4788888765554             23334443  5443322 3458899999876432    233558999


Q ss_pred             EEecCCeEEEEEE
Q 024240          190 TAVSSNRVFFTHC  202 (270)
Q Consensus       190 t~~d~~~I~~R~Y  202 (270)
                      ...|+- |++++|
T Consensus       123 ~n~~d~-i~~~~~  134 (154)
T d1w94a1         123 RTDEEY-AWVMEL  134 (154)
T ss_dssp             ECCSSS-SEEEEE
T ss_pred             ecCCCE-EEEEEE
Confidence            888886 999999