Citrus Sinensis ID: 024248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWSDL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEcccccccEEEcccccccccEEEEcccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEcccccccccccccHHHHHHHHHHHHccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHcccccHcHHccHHHHHHccccccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MQQPTSGANQRIARIAahlhpptlqiegessglgrmdcrakggspgfKVAVLGaaggigqplAMLMKINPLVSVLHLYdvvntpgvtadishmdtnAVVRGFLGQQQLedaltgmdiviipagvprkpgmtrddlfnINAGIVKTLCEGIAKCCPKAIVNlisnpvnstvPIAAEVFkkvgtydpkrllGVTMLDVVRANTFVAEVlgldprevdvpvvgghagvTILPllsqvkpscsltpteiDYLTDRIQNGGTEVVEVIRGNWSDL
Flexible Loop (DISEMBL)
MQQPTSGANQRIARiaahlhpptlQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAevlgldprevdVPVVGGHAGVTilpllsqvkpsCSLTPTEIDYltdriqnggtevVEVIRGNWSDL
Low Complexity Region (SEG)
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWSDL
Disordered region (IsUnstruct)
********************************************PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGN****
Disordered Region (DISOPRED)
************************************************VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNW***
Disordered Region (DISEMBL)
**********RIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWSDL
Disordered Region (DISPRO)
*******************************************SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWSDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
P19446	356	Malate dehydrogenase, gly	N/A	no	0.981	0.744	0.860	1e-130
P46488	356	Malate dehydrogenase, gly	N/A	no	0.981	0.744	0.860	1e-129
O82399	354	Probable malate dehydroge	yes	no	0.962	0.734	0.839	1e-124
Q9ZP05	354	Malate dehydrogenase, gly	no	no	0.955	0.728	0.827	1e-123
P37228	353	Malate dehydrogenase, gly	no	no	0.970	0.742	0.823	1e-122
Q9XFW3	358	Malate dehydrogenase 2, g	N/A	no	0.966	0.729	0.820	1e-122
Q43743	358	Malate dehydrogenase 1, g	N/A	no	0.966	0.729	0.809	1e-120
Q42972	356	Malate dehydrogenase, gly	yes	no	0.948	0.719	0.821	1e-119
P17783	347	Malate dehydrogenase, mit	N/A	no	0.829	0.645	0.674	8e-82
P83373	339	Malate dehydrogenase, mit	N/A	no	0.829	0.660	0.669	2e-81

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 240/266 (90%), Gaps = 1/266 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            EI YLTDRIQNGGTEVVE   G  S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGS 266

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  459 bits (1182), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 240/266 (90%), Gaps = 1/266 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            EI+YLTDRIQNGGTEVVE   G  S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGS 266

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  446 bits (1146), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/261 (83%), Positives = 237/261 (90%), Gaps = 1/261 (0%)

Query: 9   NQRIARIAAHLHPPTLQIE-GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
           NQRIARI+AHL+PP L  +  + SGL R+ CRAKGGSPGFKVA+LGAAGGIGQPLAMLMK
Sbjct: 4   NQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMK 63

Query: 68  INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
           +NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRK
Sbjct: 64  MNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRK 123

Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           PGMTRDDLFNINAGIV+TL E IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK GT+DPK+
Sbjct: 124 PGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKK 183

Query: 188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
           L+GVTMLDVVRANTFVAEV+ LDPREV+VPVVGGHAGVTILPLLSQVKP CS T  EI+Y
Sbjct: 184 LMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEY 243

Query: 248 LTDRIQNGGTEVVEVIRGNWS 268
           LTDRIQNGGTEVVE   G  S
Sbjct: 244 LTDRIQNGGTEVVEAKAGAGS 264

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/261 (82%), Positives = 236/261 (90%), Gaps = 3/261 (1%)

Query: 8   ANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
           ANQRIARI+AHL P   Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK
Sbjct: 7   ANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMK 63

Query: 68  INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
           +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRK
Sbjct: 64  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           PGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDPK+
Sbjct: 124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query: 188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
           LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP EI+Y
Sbjct: 184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

Query: 248 LTDRIQNGGTEVVEVIRGNWS 268
           LT+RIQNGGTEVVE   G  S
Sbjct: 244 LTNRIQNGGTEVVEAKAGAGS 264

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  438 bits (1126), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/266 (82%), Positives = 235/266 (88%), Gaps = 4/266 (1%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           +  SGA+ RI+RIA HL P   Q E +   L R DCRAKGG  GFKVA+LGAAGGIGQPL
Sbjct: 2   EANSGASDRISRIAGHLRP---QREDDVC-LKRSDCRAKGGVSGFKVAILGAAGGIGQPL 57

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVS+LHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDAL GMD+VIIPA
Sbjct: 58  AMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPA 117

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIVKTLCE IAKCCPKAIVN+ISNPVNSTVPIAAEVFK+ GT
Sbjct: 118 GVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGT 177

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLG+DPR+VDVPVVGGHAG+TILPLLSQ+KP CS TP
Sbjct: 178 YDPKRLLGVTMLDVVRANTFVAEVLGVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTP 237

Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            EI+YLT RIQNGG EVVE   G  S
Sbjct: 238 KEIEYLTGRIQNGGPEVVEAKAGAGS 263

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1

 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/262 (82%), Positives = 236/262 (90%), Gaps = 1/262 (0%)

Query: 8   ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLM 66
           AN+RIA I+AHL P  T Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LM
Sbjct: 7   ANKRIAMISAHLQPSFTPQMEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLM 66

Query: 67  KINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126
           K+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPR
Sbjct: 67  KMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPR 126

Query: 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
           KPGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTV IAAEVFKK GTYDPK
Sbjct: 127 KPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186

Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID 246
           +LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP+EI+
Sbjct: 187 KLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIE 246

Query: 247 YLTDRIQNGGTEVVEVIRGNWS 268
           YLT+RIQNGGTEVVE   G  S
Sbjct: 247 YLTNRIQNGGTEVVEAKAGAGS 268

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/262 (80%), Positives = 233/262 (88%), Gaps = 1/262 (0%)

Query: 8   ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLM 66
           A +RIA I+AHL P  T Q+E ++S +G   CRAKGG+PGFKVA+LGAAGGIGQ L++LM
Sbjct: 7   AYKRIAMISAHLQPSFTPQMEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQSLSLLM 66

Query: 67  KINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126
           K+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPR
Sbjct: 67  KMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPR 126

Query: 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
           KPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTV IAAEVFKK GTYDPK
Sbjct: 127 KPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186

Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID 246
           +LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP+EI+
Sbjct: 187 KLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIE 246

Query: 247 YLTDRIQNGGTEVVEVIRGNWS 268
           YLT+RIQNGGTEVVE   G  S
Sbjct: 247 YLTNRIQNGGTEVVEAKAGAGS 268

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  426 bits (1095), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/257 (82%), Positives = 229/257 (89%), Gaps = 1/257 (0%)

Query: 12  IARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL 71
           + R+A+HL PP  Q+E ES  L   +CRAKG +PGFKVA+LGA+GGIGQPLA+LMK+NPL
Sbjct: 11  MERLASHLRPPASQME-ESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPL 69

Query: 72  VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMT 131
           VSVLHLYDVVNTPGVTADISHM+T AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRKPGMT
Sbjct: 70  VSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMT 129

Query: 132 RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
           RDDLFNINAGIV+TLCEGIAKCCP AIVN+ISNPVNSTVPIAAEVFKK GTYDPKRLLGV
Sbjct: 130 RDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGV 189

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LDVVRANTFVAEVLGLDPR+V+VPV+GGHAGVTILPLLSQV P CS T  EI YLT R
Sbjct: 190 TTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTR 249

Query: 252 IQNGGTEVVEVIRGNWS 268
           IQNGGTEVVE   G  S
Sbjct: 250 IQNGGTEVVEAKAGAGS 266

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  303 bits (776), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 151/224 (67%), Positives = 175/224 (78%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
           P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G
Sbjct: 33  PERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVG 92

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           ++QL  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK+LC  IAK CP A++N+ISN
Sbjct: 93  EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISN 152

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVNSTVPIAAEVFKK GTYD K+L GVT LDVVRA TF A    +   EV+VPV+GGHAG
Sbjct: 153 PVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAG 212

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           +TILPL SQ  P  +L+   I  LT R Q+GGTEVVE   G  S
Sbjct: 213 ITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGS 256

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1

 Score =  302 bits (774), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/224 (66%), Positives = 175/224 (78%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
           P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+SH++T + V+G+ G
Sbjct: 25  PQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAG 84

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           ++QL +AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++L   IAK CP AI+N+ISN
Sbjct: 85  EEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMISN 144

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVNSTVPIA+EV KK G YD K+L GVT LDVVRA TF A   G+   EV+VPVVGGHAG
Sbjct: 145 PVNSTVPIASEVLKKAGVYDEKKLFGVTTLDVVRAKTFYAGKAGVPVAEVNVPVVGGHAG 204

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           +TILPL SQ  P  +L+   I  LT R Q+GGTEVVE   G  S
Sbjct: 205 ITILPLFSQATPKANLSDDYIKALTKRTQDGGTEVVEAKAGKGS 248

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
359496625	356	PREDICTED: malate dehydrogenase, glyoxys	0.981	0.744	0.887	1e-132
359475502	356	PREDICTED: malate dehydrogenase, glyoxys	0.981	0.744	0.860	1e-128
60593475	362	Chain A, Mature And Translocatable Forms	0.981	0.732	0.860	1e-128
126894	356	RecName: Full=Malate dehydrogenase, glyo	0.981	0.744	0.860	1e-128
255562058	356	malate dehydrogenase, putative [Ricinus	0.974	0.738	0.859	1e-128
1170897	356	RecName: Full=Malate dehydrogenase, glyo	0.981	0.744	0.860	1e-127
449451347	356	PREDICTED: malate dehydrogenase, glyoxys	0.981	0.744	0.860	1e-127
224097202	354	predicted protein [Populus trichocarpa]	0.977	0.745	0.835	1e-126
357482443	358	Malate dehydrogenase, glyoxysomal [Medic	0.985	0.743	0.842	1e-125
118489009	354	unknown [Populus trichocarpa x Populus d	0.970	0.740	0.847	1e-124

>gi|359496625|ref|XP_002263670.2| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|297739396|emb|CBI29427.3| unnamed protein product [Vitis vinifera]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/266 (88%), Positives = 245/266 (92%), Gaps = 1/266 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
            PTS ANQRIARI+AHL P   Q+ GESSGL R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   HPTSDANQRIARISAHLQPSNFQM-GESSGLSRENCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDALTGMD+VIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALTGMDLVIIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           +DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP CS TP
Sbjct: 181 FDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTP 240

Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            EIDYLT RIQNGGTEVVE   G  S
Sbjct: 241 EEIDYLTARIQNGGTEVVEAKAGAGS 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 242/266 (90%), Gaps = 1/266 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QPT+ ANQRIAR++AHL+P   Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPTAEANQRIARLSAHLYPSVRQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE ALTGMD+VIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIV+TLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGH+GVTILPLLSQVKP CS TP
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTP 240

Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            E  YLT+RIQNGGTEVVE   G  S
Sbjct: 241 EETQYLTNRIQNGGTEVVEAKAGAGS 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 240/266 (90%), Gaps = 1/266 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            EI YLTDRIQNGGTEVVE   G  S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGS 266

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 240/266 (90%), Gaps = 1/266 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            EI YLTDRIQNGGTEVVE   G  S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGS 266

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562058|ref|XP_002522037.1| malate dehydrogenase, putative [Ricinus communis] gi|223538636|gb|EEF40237.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/264 (85%), Positives = 241/264 (91%), Gaps = 1/264 (0%)

Query: 5   TSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAM 64
           ++ A QRIARI+AHLHPP  Q+EG SS L R DCRAKGGSPGFKVA+LGAAGGIGQPLAM
Sbjct: 4   SAEAAQRIARISAHLHPPNFQMEG-SSALKRADCRAKGGSPGFKVAILGAAGGIGQPLAM 62

Query: 65  LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124
           LMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE+ALTGMD+V+IPAGV
Sbjct: 63  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGV 122

Query: 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD 184
           PRKPGMTRDDLFNINAGIV+TLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GTYD
Sbjct: 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYD 182

Query: 185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTE 244
           PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP CS T  E
Sbjct: 183 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTSEE 242

Query: 245 IDYLTDRIQNGGTEVVEVIRGNWS 268
            +YLT RIQ+GGTEVV+   G  S
Sbjct: 243 TEYLTKRIQDGGTEVVQAKAGAGS 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170897|sp|P46488.1|MDHG_CUCSA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|695311|gb|AAC41647.1| glyoxysomal malate dehydrogenase [Cucumis sativus]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 240/266 (90%), Gaps = 1/266 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            EI+YLTDRIQNGGTEVVE   G  S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGS 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451347|ref|XP_004143423.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus] gi|449499834|ref|XP_004160930.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 240/266 (90%), Gaps = 1/266 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            EI+YLTDRIQNGGTEVVE   G  S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGS 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097202|ref|XP_002310874.1| predicted protein [Populus trichocarpa] gi|222853777|gb|EEE91324.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/268 (83%), Positives = 241/268 (89%), Gaps = 4/268 (1%)

Query: 1   MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQ 60
           MQQ    +N R+ARIAAH++PP LQ+  E  GL R++CRAKG S GFKVA+LGAAGGIGQ
Sbjct: 1   MQQ----SNLRVARIAAHINPPNLQMVEEDLGLERVNCRAKGASSGFKVAILGAAGGIGQ 56

Query: 61  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120
           PLAMLMK+NPLVS+LHLYDVVN PGVTADISHMDT+AVVRGFLGQQQLEDAL GMD+VII
Sbjct: 57  PLAMLMKMNPLVSLLHLYDVVNAPGVTADISHMDTSAVVRGFLGQQQLEDALIGMDLVII 116

Query: 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV 180
           PAGVPRKPGMTRDDLFNINAGIVKTLCE IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK 
Sbjct: 117 PAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKA 176

Query: 181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL 240
           G +DPKR+LGVTMLDVVRANTFVAE++GLDPREVDVPVVGGHAGVTILPLLSQVKP CS 
Sbjct: 177 GVFDPKRVLGVTMLDVVRANTFVAEIMGLDPREVDVPVVGGHAGVTILPLLSQVKPLCSF 236

Query: 241 TPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           T  EIDYLTDRIQNGGTEVVE   G  S
Sbjct: 237 TQKEIDYLTDRIQNGGTEVVEAKAGAGS 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482443|ref|XP_003611508.1| Malate dehydrogenase, glyoxysomal [Medicago truncatula] gi|355512843|gb|AES94466.1| Malate dehydrogenase, glyoxysomal [Medicago truncatula]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/267 (84%), Positives = 241/267 (90%), Gaps = 1/267 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQI-EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQP 61
           +P S AN RI RIA+HL+PP L++ E   S L  + CRAKGGSPGFKVA+LGAAGGIGQP
Sbjct: 2   EPNSYANSRITRIASHLNPPNLKMNEHGGSSLTNVHCRAKGGSPGFKVAILGAAGGIGQP 61

Query: 62  LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP 121
           L+MLMKINPLVSVLHLYDVVNTPGVT+DISHMDT+AVVRGFLGQ QLEDALTGMD+VIIP
Sbjct: 62  LSMLMKINPLVSVLHLYDVVNTPGVTSDISHMDTSAVVRGFLGQNQLEDALTGMDLVIIP 121

Query: 122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG 181
           AGVPRKPGMTRDDLFNINAGIVKTLCE IAK CPKAIVNLISNPVNSTVPIAAEVFK+ G
Sbjct: 122 AGVPRKPGMTRDDLFNINAGIVKTLCEAIAKQCPKAIVNLISNPVNSTVPIAAEVFKRAG 181

Query: 182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT 241
           TYDPKRLLGVTMLDVVRANTFVAEV+GLDPR+VDVPVVGGHAG+TILPLLSQVKP  S T
Sbjct: 182 TYDPKRLLGVTMLDVVRANTFVAEVMGLDPRDVDVPVVGGHAGITILPLLSQVKPPSSFT 241

Query: 242 PTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           P EI+YLTDRIQNGGTEVVE   G  S
Sbjct: 242 PKEIEYLTDRIQNGGTEVVEAKAGAGS 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489009|gb|ABK96312.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/263 (84%), Positives = 236/263 (89%), Gaps = 1/263 (0%)

Query: 6   SGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAML 65
           S ANQRIAR++AHL PP  Q+E ES  L R DCRAKGG+PGFKVA+LGAAGGIGQPLAML
Sbjct: 3   SVANQRIARVSAHLQPPNSQME-ESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAML 61

Query: 66  MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125
           MK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE+ALTGMD+VIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 121

Query: 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185
           RKPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDP
Sbjct: 122 RKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDP 181

Query: 186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 245
           KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ KP  S TP E 
Sbjct: 182 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEET 241

Query: 246 DYLTDRIQNGGTEVVEVIRGNWS 268
           +YLT RIQ+GGTEVV+   G  S
Sbjct: 242 EYLTKRIQDGGTEVVQAKAGAGS 264

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.951	0.725	0.844	5.8e-114
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.944	0.702	0.833	2.9e-112
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.848	0.671	0.650	5.7e-75
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.811	0.543	0.662	6.5e-74
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.829	0.656	0.660	8.4e-74
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.807	0.644	0.633	6.7e-72
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.844	0.676	0.613	1.4e-71
UNIPROTKB|J9NY79	338	J9NY79 "Malate dehydrogenase"	0.807	0.644	0.628	2.3e-71
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.829	0.666	0.611	3.7e-71
ZFIN|ZDB-GENE-040426-2143	337	mdh2 "malate dehydrogenase 2,	0.807	0.646	0.619	9.9e-71

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 218/258 (84%), Positives = 236/258 (91%)

Query:     9 NQRIARIAAHLHPPTLQIE-GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
             NQRIARI+AHL+PP L  +  + SGL R+ CRAKGGSPGFKVA+LGAAGGIGQPLAMLMK
Sbjct:     4 NQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMK 63

Query:    68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
             +NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRK
Sbjct:    64 MNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRK 123

Query:   128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
             PGMTRDDLFNINAGIV+TL E IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK GT+DPK+
Sbjct:   124 PGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKK 183

Query:   188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
             L+GVTMLDVVRANTFVAEV+ LDPREV+VPVVGGHAGVTILPLLSQVKP CS T  EI+Y
Sbjct:   184 LMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEY 243

Query:   248 LTDRIQNGGTEVVEVIRG 265
             LTDRIQNGGTEVVE   G
Sbjct:   244 LTDRIQNGGTEVVEAKAG 261

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 215/258 (83%), Positives = 235/258 (91%)

Query:     8 ANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
             ANQRIARI+AHL P   Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK
Sbjct:     7 ANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMK 63

Query:    68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
             +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRK
Sbjct:    64 MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query:   128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
             PGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDPK+
Sbjct:   124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query:   188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
             LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP EI+Y
Sbjct:   184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

Query:   248 LTDRIQNGGTEVVEVIRG 265
             LT+RIQNGGTEVVE   G
Sbjct:   244 LTNRIQNGGTEVVEAKAG 261

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 149/229 (65%), Positives = 173/229 (75%)

Query:    40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV 99
             + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V
Sbjct:    23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEV 82

Query:   100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
              G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC  IAK CP A++
Sbjct:    83 VGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALI 142

Query:   160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV 219
             N+ISNPVNSTVPIAAE+FKK G YD K+L GVT LDVVRA TF A    +   EV+VPV+
Sbjct:   143 NMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVI 202

Query:   220 GGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
             GGHAGVTILPL SQ  P  +L+   +  LT R Q+GGTEVVE   G  S
Sbjct:   203 GGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGS 251

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 145/219 (66%), Positives = 174/219 (79%)

Query:    47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
             +KVAVLGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G  
Sbjct:    83 YKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPS 142

Query:   107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             +L D L  +++V+IPAGVPRKPGMTRDDLFNINA IVKTL E +A+ CP A +++ISNPV
Sbjct:   143 ELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPV 202

Query:   167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
             NSTVPIAAEV KK G YDPK+L GVT LDVVRANTFV++   L   +VDVPV+GGHAG+T
Sbjct:   203 NSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGIT 262

Query:   227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRG 265
             ILPLLS+ KPS + T  EI  LT RIQN GTEVV+   G
Sbjct:   263 ILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAG 301

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 148/224 (66%), Positives = 172/224 (76%)

Query:    45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
             P  KV +LGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G
Sbjct:    28 PDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMG 87

Query:   105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK L   IAK CP+A+VN+ISN
Sbjct:    88 DDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISN 147

Query:   165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
             PVNSTVPIAAE+FKK GTYD K+L GVT LDVVRA TF A    ++  EV+VPVVGGHAG
Sbjct:   148 PVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAG 207

Query:   225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
             +TILPL SQ  P  +L+   I  LT R Q+GGTEVVE   G  S
Sbjct:   208 ITILPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGS 251

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 138/218 (63%), Positives = 171/218 (78%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPLA+L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct:    26 KVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTAACAQHCPEAMICVISNPVN 145

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PIA EVFKK G YDP ++ GVT LD+VRANTF+AE+ GLDP  V+VPV+GGHAG TI
Sbjct:   146 STIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTI 205

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRG 265
             +PL+SQ  P   L   ++  +T RIQ  GTEVV+   G
Sbjct:   206 IPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAG 243

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 141/230 (61%), Positives = 173/230 (75%)

Query:    38 CR--AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT 95
             CR  A       KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T
Sbjct:    13 CRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 72

Query:    96 NAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              A V+GFLG +QL + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    AK CP
Sbjct:    73 RANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCP 132

Query:   156 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
             +A++ +ISNPVNST+PI +EVFKK G Y+P R+ GVT LD+VRANTFVAE+ GLDP  V 
Sbjct:   133 EAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVS 192

Query:   216 VPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRG 265
             VPV+GGHAG TI+PL+SQ  P       +++ LT RIQ  GTEVV+   G
Sbjct:   193 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAG 242

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

UNIPROTKB|J9NY79 J9NY79 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 137/218 (62%), Positives = 171/218 (78%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPLA+L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct:    26 KVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L D L G D+V+IPAGVPRKPGMTR+DLFN NA IV TL    A+ CP+A++ +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRNDLFNTNASIVATLTAACAQHCPEAMICVISNPVN 145

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PIA EVFKK G YDP ++ GVT LD+VRANTF+AE+ GLDP  V+VPV+GGHAG TI
Sbjct:   146 STIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTI 205

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRG 265
             +PL+SQ  P   L   ++  +T RIQ  GTEVV+   G
Sbjct:   206 IPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAG 243

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 137/224 (61%), Positives = 170/224 (75%)

Query:    42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG 101
             G    +KV V GAAGGIGQPL++L+K NPLV+ L LYD+V+TPGV AD+SH+DT +   G
Sbjct:    20 GQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPGVAADLSHIDTKSKTAG 79

Query:   102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             F+G  QL D+L G D+V+IPAGVPRKPGMTRDDLFN+NAGI+K +   IAK CPKA+V +
Sbjct:    80 FIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAI 139

Query:   162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
             I+NPVN+ VPIAAE+ KK G YDPKRL GV+ LDVVRA  F+   LG+DP+ V +PV+GG
Sbjct:   140 ITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGG 199

Query:   222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRG 265
             H+GVTILP+LSQ +P        I+ LT RIQ  GTEVV+   G
Sbjct:   200 HSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAG 243

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

ZFIN|ZDB-GENE-040426-2143 mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Danio rerio (taxid:7955)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 135/218 (61%), Positives = 172/218 (78%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPL++L+K +PLVS L L+D+ +TPGV AD+SH++T A V+G++G  Q
Sbjct:    25 KVAVLGASGGIGQPLSLLLKNSPLVSELSLFDIAHTPGVAADLSHIETRAHVKGYIGADQ 84

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L DAL G ++V+IPAGVPRKPGMTRDDLFN NA IV TL +G A+ CP+A++ +ISNPVN
Sbjct:    85 LGDALKGCEVVVIPAGVPRKPGMTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVN 144

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PI +EV KK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPVVGGHAG+TI
Sbjct:   145 STIPITSEVMKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVVGGHAGITI 204

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRG 265
             +PL+SQ  P       ++  LT RIQ  GTEVV+   G
Sbjct:   205 IPLISQCTPKVEFPADQLSALTGRIQEAGTEVVKAKAG 242

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.8091	0.9666	0.7290	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.6199	0.8185	0.6538	yes	no
B1LGK2	MDH_ECOSM	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
C4ZSX4	MDH_ECOBW	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
Q42972	MDHG_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.8210	0.9481	0.7191	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6244	0.8185	0.6538	yes	no
Q31WA4	MDH_SHIBS	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
Q0TCN0	MDH_ECOL5	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
A8A545	MDH_ECOHS	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
B7UJW8	MDH_ECO27	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
Q1R6A3	MDH_ECOUT	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.8609	0.9814	0.7443	N/A	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.6153	0.8185	0.6538	yes	no
A1AGC9	MDH_ECOK1	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.8206	0.9666	0.7290	N/A	no
B7N0M1	MDH_ECO81	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
B2U1U9	MDH_SHIB3	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
B7MBZ7	MDH_ECO45	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5975	0.9037	0.7155	yes	no
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
B4F2A1	MDH_PROMH	1, ., 1, ., 1, ., 3, 7	0.6071	0.8148	0.7051	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.6199	0.8185	0.6538	yes	no
A7ZSD0	MDH_ECO24	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.6244	0.8185	0.6538	yes	no
Q0T052	MDH_SHIF8	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
B1XHK9	MDH_ECODH	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.8609	0.9814	0.7443	N/A	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.6199	0.8185	0.6538	yes	no
B7NKU9	MDH_ECO7I	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
O82399	MDHG2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8390	0.9629	0.7344	yes	no
P61890	MDH_ECOL6	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5937	0.8148	0.7051	yes	no
B5YSW2	MDH_ECO5E	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
Q83Q04	MDH_SHIFL	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.6026	0.8148	0.7051	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
3rd Layer	1.1.1.37	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010647001	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (356 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003727001	RecName- Full=Citrate synthase; (472 aa)				•	•	•	•		0.956
	GSVIVG00017898001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa)						•	•		0.941
	GSVIVG00028048001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (470 aa)						•	•		0.929
	VVME2	RecName- Full=Malic enzyme; (591 aa)						•	•		0.905
	NADP-ME	RecName- Full=Malic enzyme; (496 aa)						•	•		0.905
	GSVIVG00016723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa)						•	•		0.903
	GSVIVG00032723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa)						•	•		0.903
	GSVIVG00032463001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (450 aa)						•	•		0.902
	GSVIVG00026767001	RecName- Full=Malic enzyme; (605 aa)						•	•		0.902
	GSVIVG00018984001	RecName- Full=Malic enzyme; (625 aa)						•	•		0.902

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	1e-172
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	1e-149
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-113
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-106
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	6e-99
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	8e-64
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	3e-56
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	7e-41
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	3e-40
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	3e-39
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	2e-30
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	4e-27
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	5e-27
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	3e-25
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	5e-24
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	2e-23
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	4e-19
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	7e-18
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	6e-17
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	1e-15
cd00704	323	cd00704, MDH, Malate dehydrogenase	5e-15
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	6e-15
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	8e-14
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	2e-11
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	2e-11
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	3e-11
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	6e-11
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	4e-09
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	9e-08
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	7e-07
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	4e-06
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	0.001

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  477 bits (1229), Expect = e-172
 Identities = 178/233 (76%), Positives = 194/233 (83%)

Query: 29  ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 88
                    CRAKGG+PGFKVAVLGAAGGIGQPL++LMK+NPLVS LHLYD+ NTPGV A
Sbjct: 1   SMEASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAA 60

Query: 89  DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE 148
           D+SH++T A VRGFLG  QL DAL G D+VIIPAGVPRKPGMTRDDLFNINAGIVKTLCE
Sbjct: 61  DVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE 120

Query: 149 GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG 208
            +AK CP A+VN+ISNPVNSTVPIAAEV KK G YDPK+L GVT LDVVRANTFVAE  G
Sbjct: 121 AVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKG 180

Query: 209 LDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
           LDP +VDVPVVGGHAG+TILPLLSQ  P  S T  EI+ LT RIQNGGTEVVE
Sbjct: 181 LDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVE 233

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  419 bits (1080), Expect = e-149
 Identities = 153/215 (71%), Positives = 181/215 (84%)

Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
            KVAVLGAAGGIGQPL++L+K+NPLVS L LYD+VNTPGV AD+SH++T A V G+LG +
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
           +L+ AL G D+V+IPAGVPRKPGMTRDDLFNINAGIV+ L   +AK CPKA++ +ISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
           NSTVPIAAEV KK G YDPKRL GVT LDVVRANTFVAE+LGLDP +V+VPV+GGH+GVT
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
           ILPLLSQ +P  +    EI+ LT RIQ GG EVV+
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVK 215

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  328 bits (844), Expect = e-113
 Identities = 137/214 (64%), Positives = 169/214 (78%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGAAGGIGQPL++L+K+ P VS L LYD+    GV AD+SH+ T A V+GF G++ 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           LE+AL G D+V+IPAGVPRKPGMTRDDLFN+NAGIVK L   +A+ CPKA++ +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           STVPIAAEV KK G YDP +L GVT LD+VRANTFVAE+ G DP EV+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
           +PL+SQ       T  +++ L  RIQN GTEVV+
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVK 214

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  311 bits (799), Expect = e-106
 Identities = 136/223 (60%), Positives = 160/223 (71%), Gaps = 4/223 (1%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L E +AK CPKA + +I+NP
Sbjct: 62  D-PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LDV+R+ TFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           TILPLLSQV P  S T  E+  LT RIQN GTEVVE   G  S
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGS 222

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  291 bits (748), Expect = 6e-99
 Identities = 136/214 (63%), Positives = 163/214 (76%), Gaps = 2/214 (0%)

Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
           FKVAVLGAAGGIGQPL++L+K NP VS L LYD+V  PGV AD+SH+DT A V G+   +
Sbjct: 9   FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGE 68

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             E AL G D+V+I AGVPRKPGMTRDDLFN NA IV+ L   +A   PKAIV ++SNPV
Sbjct: 69  LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
           NSTVPIAAE  KK G YDP++L GVT LDVVRA  FVAE LG++P +V+VPVVGGH+GVT
Sbjct: 129 NSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVT 188

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
           I+PLLSQ     SL   +++ +T R+Q GG EVV
Sbjct: 189 IVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVV 220

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  202 bits (515), Expect = 8e-64
 Identities = 90/226 (39%), Positives = 124/226 (54%), Gaps = 17/226 (7%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KVAV+GA G +G  LA L+ +  L S L L D+      GV  D+SH          +  
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
               + L G DIV+I AGVPRKPGMTR DL   NA IVK + + IAK  P AIV +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    IA +           R++G  T+LD  R  TF+AE LG+ P++V   V+G H G
Sbjct: 121 VDILTYIAMKFSGF----PKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-G 175

Query: 225 VTILPLLSQV----KPSCSL----TPTEIDYLTDRIQNGGTEVVEV 262
            T++PL SQ     KP   L    T  +++ L +R++N G E++E 
Sbjct: 176 DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEA 221

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  176 bits (450), Expect = 3e-56
 Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTNAVVRGFLGQ 105
           KVAV+GA GG+G  LA  + +  L   L L D+      GV  D+SH  T   V G +G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
               +AL   D+V+I AGVPRKPGMTR DL N NAGI K +   IAK  P AIV ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    IA +V    G    + +  
Sbjct: 121 VDILTYIAWKVS---GLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  142 bits (361), Expect = 7e-41
 Identities = 86/226 (38%), Positives = 128/226 (56%), Gaps = 23/226 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGF--- 102
           K++++GA G +G  LA L+ +  L  V+ L+D+V   P G   DI+     A V GF   
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G    ED + G D+V+I AGVPRKPGM+RDDL  INA I+K + EGI K  P AIV +
Sbjct: 59  ITGTNDYED-IAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV++   +A     K   +   R++G+  +LD  R  TF+AE L +  ++V   V+G
Sbjct: 118 VTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLG 173

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVE 261
           GH G +++PL+        P   L   E +D + +R + GG E+V 
Sbjct: 174 GH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVG 218

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  140 bits (356), Expect = 3e-40
 Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 23/225 (10%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHM----DTNAVVRGF 102
           ++++GA G +G  LA L+ +  L  V+ L D+V   P G   DIS       ++  V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGT 58

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              + +  +    D+V+I AG+PRKPGM+RDDL   NA IVK + E I K  P AIV ++
Sbjct: 59  NDYEDIAGS----DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NP++        V  K   +   R++G+  +LD  R   F+AE LG+  ++V   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 222 HAGVTILPLLSQ-----VKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
           H G T++PL        +  +  +T  EID + +R +NGG E+V 
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVN 214

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  137 bits (346), Expect = 3e-39
 Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 9/207 (4%)

Query: 49  VAVLGAAGGIGQPLA--MLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG 104
           +AV+GA G +G  LA  +      L   L LYD+      GV  D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                +A    D+VII AGV RKPGM R DL   N  IVK + + I K  P A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PV+    I   +  +      ++++G+  LD +R    +AE LG+DP +V V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDR 251
            + +P  S V+ + S+       L D 
Sbjct: 177 -SQVPDWSTVRIATSIADLIRSLLNDE 202

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  115 bits (290), Expect = 2e-30
 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 22/230 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISH-MDTNAVVRGFLG 104
           K++++GA G IG  +A+L+    L  V+ LYDV+   P G   D+ H           LG
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
               ED +   D+V+I AGV RK  MTR+DL  IN  I+K++ E + K CP A V  ++N
Sbjct: 65  TNNYED-IKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++       +VF++       ++ G+  +LD  R    +AE LG+ P +V   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 224 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVI 263
           G  ++PL          LS      ++T  EI+ +  + +N G E+V+++
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL 228

Length = 319

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  106 bits (266), Expect = 4e-27
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 17/224 (7%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQ 106
           + ++GA G +G  +A  +    L S L L DV      G   D+SH          +   
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGG 59

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
              DA    DIV+I AG PRKPG TR DL N NA I++++   + K  P AI+ ++SNPV
Sbjct: 60  DYADA-ADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV 118

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           +    I   V +K+      R++G  T+LD  R  + +AE L +DP+ V   V+G H G 
Sbjct: 119 D----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEH-GD 173

Query: 226 TILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEV 262
           + +   S       P   L P    +++ + + ++  G E++ +
Sbjct: 174 SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRL 217

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  106 bits (266), Expect = 5e-27
 Identities = 79/236 (33%), Positives = 131/236 (55%), Gaps = 27/236 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVR-GFLG 104
           K++++G+ G IG  +A L+ +  L  V+ L+D+V N P G   DISH +  A      +G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIV 159
               ED + G D+VI+ AG+ ++PG +     RDDL  +NA I+  + EGI K CP A V
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPV 218
            +I+NP++  V    ++ ++       ++ G+  +LD  R  T++AE LG++PR+V   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 219 VGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
           +G H G  ++PL          LS+      +T  EID + +R +N G E+V+++ 
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLLG 235

Length = 321

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  101 bits (253), Expect = 3e-25
 Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 43/239 (17%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHL-----------------YDVVNTPGVTADI 90
           KV+++GA+G +G   A+L+    +V  ++L                 YD +   G+ A+I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 91  SHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI 150
                 + V              G DIVII AGVPRK GM+R DL   NA IVK   + I
Sbjct: 62  KISSDLSDV-------------AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 151 AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGL 209
           A+  P   + +++NPV+     A     K   +D  R+ G+ T LD +R    +A+   +
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKAL----KESGFDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 210 DPREVDVPVVGGHAGVTILPLLSQVK----PSCSLTPTE---IDYLTDRIQNGGTEVVE 261
              EV   ++G H G +++PL+S       P       +   ++ + + ++N G  ++ 
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIIS 222

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score = 98.0 bits (244), Expect = 5e-24
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 23/229 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF--- 102
           K++V+GA G +G   A  +    L  ++ L DVV     G   D   M   + V GF   
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALD---MYEASPVGGFDTK 57

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIV+I AG+PRKPGM+R+DL ++NAGIV+ +   I +  P  I+ +
Sbjct: 58  VTGTNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNP+++   +A +       +  +R++G   +LD  R  TF+A  LG+  ++V   V+G
Sbjct: 117 VSNPLDAMTYVAWQ----KSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLG 172

Query: 221 GHAGVTILPL-----LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
           GH G  ++PL     ++ +  +  ++   I  + +R + GG E+V +++
Sbjct: 173 GH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLLK 220

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score = 93.5 bits (233), Expect = 2e-23
 Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 10/80 (12%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG----------VTILPLLSQVKPSCSLT 241
           T LD  RA TF+AE  G+DPR V+V V+G H+G          VTI+PL+SQVK +   T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 242 PTEIDYLTDRIQNGGTEVVE 261
             E++ L +R+QN G EV+E
Sbjct: 61  DWELEELIERVQNAGYEVIE 80

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 84.4 bits (210), Expect = 4e-19
 Identities = 67/234 (28%), Positives = 103/234 (44%), Gaps = 34/234 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHM--DTNAVVRGF 102
           KV ++GA G +G   A  +    +   L L D+ N         D+        + V+  
Sbjct: 2   KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKIK 59

Query: 103 LGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
            G     +DA    DIV+I AG P+KPG TR DL   NA I+K++   I       I  +
Sbjct: 60  AGDYSDCKDA----DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLV 115

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            SNPV+    +   V +K+      R++G  T LD  R    +AE L +DPR V   V+G
Sbjct: 116 ASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLG 171

Query: 221 GH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
            H              G  +L LL + K    L+  ++D + + ++  G E++ 
Sbjct: 172 EHGDSQFVAWSTVTVGGKPLLDLLKEGK----LSELDLDEIEEDVRKAGYEIIN 221

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 81.1 bits (201), Expect = 7e-18
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%)

Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
               D+V+I AG P+KPG TR +L   N  I+K++   + K     I  + +NPV+    
Sbjct: 62  CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---- 117

Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL 230
           I   V  K+  +   R++G  T+LD  R    +AE LG+DP+ V   ++G H G + +P+
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEH-GDSEVPV 176

Query: 231 LSQVK 235
            S   
Sbjct: 177 WSSAT 181

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 78.3 bits (194), Expect = 6e-17
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 16/181 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISH-MDTNAVVRGFL 103
           KVA++GA G +G   A  + +  L S + L D+ N         D++H       VR + 
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDI-NKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 104 GQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           G     + A    D+V+I AG  +KPG TR DL   N  I K +   I K  P AI+ ++
Sbjct: 60  GDYADCKGA----DVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    +   V  K+    P R++G  T+LD  R    + E LG+DPR V   ++G 
Sbjct: 116 TNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171

Query: 222 H 222
           H
Sbjct: 172 H 172

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 12/144 (8%)

Query: 110 DALTGMDIVIIPAGVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           D     DI++I AG    PG T  R DL   NA I++ +   I K   +A++ LI+NP++
Sbjct: 64  DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD 123

Query: 168 STVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
             V IAA  F     Y   +++G  TMLD  R    VA+  G+DP+ V   V+G H G  
Sbjct: 124 IAVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSH 178

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTD 250
             P+ S V    ++    +D L  
Sbjct: 179 AFPVWSLV----NIAGLPLDELEA 198

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 73.1 bits (180), Expect = 5e-15
 Identities = 60/204 (29%), Positives = 87/204 (42%), Gaps = 30/204 (14%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-- 98
            V + GAAG IG  L        +     P++  LHL D+         +  ++   +  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI------PPAMKALEGVVMEL 53

Query: 99  -------VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA 151
                  ++G +     E+A   +D+ I+    PRKPGM R DL   NA I K   E + 
Sbjct: 54  QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALN 113

Query: 152 KCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLD 210
           K   P   V ++ NP N+   IA    K      PK    +T LD  RA   VA  LG+ 
Sbjct: 114 KVAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 211 PREV-DVPVVGGHAGVTILPLLSQ 233
             +V +V + G H+  T +P LS 
Sbjct: 171 VSDVKNVIIWGNHSN-TQVPDLSN 193

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 32/243 (13%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        +  K  P+V  LHL D+        GV  ++   D  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMEL--EDCA 60

Query: 97  -AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
             ++ G +     E+A   +D  ++    PRKPGM R DL + N  I K   + + K   
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K + V ++ NP N+   IA++    +    PK    +T LD  RA   +A   G+   +V
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDI---PPKNFSAMTRLDHNRAKYQLAAKAGVPVSDV 177

Query: 215 -DVPVVGGHAGVTILPLLSQ----VKPSCSLTPTEIDYL----TDRIQNGGTEVVEVIRG 265
            +V + G H+  T +P  +      +P   +   +  +L       +Q  G  V+E  RG
Sbjct: 178 KNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDD-KWLEGEFIPTVQQRGAAVIEA-RG 234

Query: 266 NWS 268
             S
Sbjct: 235 ASS 237

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 69.5 bits (171), Expect = 8e-14
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 173
             D+V+I AG P+KPG TR DL   N  I K++   +       I  + SNPV+    I 
Sbjct: 73  DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----IL 128

Query: 174 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 232
                K+  +  +R++G  T LD  R    ++E L +DPR V   ++G H G T  P+ S
Sbjct: 129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEH-GDTEFPVWS 187

Query: 233 QV 234
             
Sbjct: 188 HA 189

Length = 315

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI---AKCCPKA 157
           G +   +LE+A   +D   + A VP KPG  R DL   N  I K   E +   AK   K 
Sbjct: 47  GTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
           +V  I NPVN+   +A     K+     +    + MLD  RA + +A  L +    +   
Sbjct: 107 LV--IGNPVNTNCLVAMLHAPKL---SAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161

Query: 218 VVGGHAGVTILPLLSQV 234
           VV G+   +++  L+  
Sbjct: 162 VVWGNHAESMVADLTHA 178

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 22/203 (10%)

Query: 44  SPGFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVR 100
            P  KV V+G    G+   +++L K   L   L L DVV     G   D+ H        
Sbjct: 1   KPRNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH------GS 52

Query: 101 GFLGQQQLE-----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
            FL   ++E            +VI+ AG  +  G +R DL   N  I K +   + K  P
Sbjct: 53  AFLKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP 112

Query: 156 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV 214
            AI+ ++SNPV+    I   V  K+      R++G    LD  R    +AE LG+ P  V
Sbjct: 113 NAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSV 168

Query: 215 DVPVVGGHAGVTILPLLSQVKPS 237
              ++G H G + +P+ S V  +
Sbjct: 169 HGWIIGEH-GDSSVPVWSGVNVA 190

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 59/200 (29%), Positives = 86/200 (43%), Gaps = 18/200 (9%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISH--MDTN-A 97
           +V V GAAG IG  L        ML K  P++  LHL D+     V   +    MD    
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGVVMELMDCAFP 58

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           ++ G +       A T +D+ I+    PRK GM R DL + N  I K     + K   K 
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-D 215
             V ++ NP N+   + +     +    PK    +T LD  RA   VAE  G+   +V +
Sbjct: 119 CKVLVVGNPANTNALVLSNYAPSI---PPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175

Query: 216 VPVVGGHAGVTILPLLSQVK 235
           V + G H+  T  P ++   
Sbjct: 176 VIIWGNHSS-TQYPDVNHAT 194

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 27/192 (14%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 94
           +V V GAAG I   L        +     P++  LHL D+   P      GV  ++   D
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDI--PPALKALEGVVMEL--QD 57

Query: 95  TN-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
               +++  +     E+A   +D+ I+   +PRK GM R DL   N  I K   E + K 
Sbjct: 58  CAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKY 117

Query: 154 CPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKR-LLGVTMLDVVRANTFVAEVLGLDP 211
             K + V ++ NP N+   I  +    +    PK     +T LD  RA + +A  LG+  
Sbjct: 118 AKKNVKVLVVGNPANTNALILLKYAPSI----PKENFTALTRLDHNRAKSQIALKLGVPV 173

Query: 212 REV-DVPVVGGH 222
            +V +V + G H
Sbjct: 174 SDVKNVIIWGNH 185

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 29/234 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTNAVVRGFLGQ 105
           KV+V+G  G +G  +A  +    L   L L DV      G   D+ H         FL +
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH------AAAFLPR 91

Query: 106 QQL----EDALT-GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
            ++    + A+T G D+ I+ AG  + PG +R +L   N  + + +   +AK  P  I+ 
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           ++SNPV+    +   V  K+  +   R++G  T LD  R    +A+ L ++ ++V   +V
Sbjct: 152 IVSNPVD----VLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207

Query: 220 GGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVV----EVIR 264
           G H G + + L S V     P  S L   +I Y  + ++     VV    EVI+
Sbjct: 208 GEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK 260

Length = 350

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 51.7 bits (124), Expect = 9e-08
 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 18/166 (10%)

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKA 157
           ++G +    + +A  G++I ++  G PRK GM R D+ + N  I K+    + K   P  
Sbjct: 43  LKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDC 102

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
            V +++NP N+   I  E    +     K +  +T LD  RA   ++E LG+   +V   
Sbjct: 103 KVLVVANPANTNALILKEFAPSI---PEKNITCLTRLDHNRALGQISERLGVPVSDVKNV 159

Query: 218 VVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVI 263
           ++ G+   T  P              ++++ T +  +G   V E++
Sbjct: 160 IIWGNHSSTQYP--------------DVNHATVKTPSGEKPVRELV 191

Length = 309

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 23/190 (12%)

Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        M     P++  L L ++        GV  ++   +  
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMEL---EDC 58

Query: 97  A--VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C 153
           A  ++   +       A    D  ++    PR PGM R DL   N  I     + +    
Sbjct: 59  AFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 154 CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRE 213
                V ++ NP N+   IA +    +    P     +T LD  RA + +A+  G+   +
Sbjct: 119 SRDVKVLVVGNPCNTNALIAMKNAPDI---PPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 214 V-DVPVVGGH 222
           V ++ + G H
Sbjct: 176 VKNMVIWGNH 185

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 33/195 (16%)

Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV- 99
           +VAV GAAG IG  L        ML K  P++  L L ++   P + A         VV 
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVI--LQLLEI--PPALKA------LEGVVM 55

Query: 100 ----------RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG 149
                      G +       A    D+ ++    PR PGM R DL   N  I     + 
Sbjct: 56  ELDDCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKA 115

Query: 150 IAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG 208
           + +   + + V ++ NP N+   IA +    +     +    +T LD  RA + +A   G
Sbjct: 116 LNEVAARDVKVLVVGNPANTNALIAMKNAPDL---PAENFTAMTRLDHNRALSQLAAKAG 172

Query: 209 LDPREV-DVPVVGGH 222
           +   ++  + V G H
Sbjct: 173 VPVADIKKMTVWGNH 187

Length = 326

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 42/146 (28%), Positives = 57/146 (39%), Gaps = 28/146 (19%)

Query: 125 PRKPGMTRDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV 180
           PR PGM R DL +IN  I     K L E  ++   K IV  + NP N+   I     K  
Sbjct: 187 PRGPGMERADLLDINGQIFAEQGKALNEVASRNV-KVIV--VGNPCNTNALIC---LKNA 240

Query: 181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL 240
                K    +T LD  RA   +A   G+   +V    + G+   T +P           
Sbjct: 241 PNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVP----------- 289

Query: 241 TPTEIDYLTDRIQNGGTEVVEVIRGN 266
                D+L  +I   G  V EVI  +
Sbjct: 290 -----DFLNAKI--NGLPVKEVITDH 308

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
PLN00106	323	malate dehydrogenase	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PLN02602	350	lactate dehydrogenase	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PLN00135	309	malate dehydrogenase	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	99.97
KOG1496	332	consensus Malate dehydrogenase [Energy production	99.96
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.92
PRK15076	431	alpha-galactosidase; Provisional	99.91
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.89
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.86
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.85
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.77
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.76
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.61
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.27
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.12
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.11
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.0
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.99
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.99
PLN02650	351	dihydroflavonol-4-reductase	98.93
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	98.93
PLN02427	386	UDP-apiose/xylose synthase	98.91
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.9
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.9
PLN00198	338	anthocyanidin reductase; Provisional	98.89
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.89
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.87
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.85
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.85
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.84
PLN02206	442	UDP-glucuronate decarboxylase	98.83
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.81
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.81
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.81
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.81
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.8
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.8
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.79
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.79
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.78
PLN02572	442	UDP-sulfoquinovose synthase	98.77
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.77
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.74
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.74
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.74
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	98.72
PLN02896	353	cinnamyl-alcohol dehydrogenase	98.72
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.71
PLN02214	342	cinnamoyl-CoA reductase	98.71
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	98.7
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.69
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	98.69
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.67
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.67
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	98.66
PLN02653	340	GDP-mannose 4,6-dehydratase	98.65
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	98.64
CHL00194	317	ycf39 Ycf39; Provisional	98.64
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.63
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.6
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	98.6
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	98.6
PLN02778	298	3,5-epimerase/4-reductase	98.59
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.59
PLN02260	668	probable rhamnose biosynthetic enzyme	98.58
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	98.57
PLN02583	297	cinnamoyl-CoA reductase	98.56
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.55
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.54
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.54
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.54
PRK10675	338	UDP-galactose-4-epimerase; Provisional	98.51
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.51
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.5
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.49
PLN02686	367	cinnamoyl-CoA reductase	98.47
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.44
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.42
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.42
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.41
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.38
PRK06194	287	hypothetical protein; Provisional	98.35
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.34
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.34
COG2910	211	Putative NADH-flavin reductase [General function p	98.3
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	98.29
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	98.29
PLN02240	352	UDP-glucose 4-epimerase	98.28
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.27
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.26
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	98.26
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.21
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.21
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.21
PLN03209	576	translocon at the inner envelope of chloroplast su	98.19
PRK07201	657	short chain dehydrogenase; Provisional	98.18
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.17
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	98.16
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.15
PLN02260	668	probable rhamnose biosynthetic enzyme	98.14
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.13
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.12
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.12
PRK12320	699	hypothetical protein; Provisional	98.12
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	98.12
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.09
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.08
PLN02253	280	xanthoxin dehydrogenase	98.08
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	98.08
PRK05865	854	hypothetical protein; Provisional	98.07
PRK06482	276	short chain dehydrogenase; Provisional	98.07
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	98.06
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.05
PRK10538	248	malonic semialdehyde reductase; Provisional	98.04
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.04
PRK12829	264	short chain dehydrogenase; Provisional	98.03
PRK05717	255	oxidoreductase; Validated	98.02
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	98.02
PRK06180	277	short chain dehydrogenase; Provisional	98.02
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.02
PRK08643	256	acetoin reductase; Validated	98.01
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.01
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	98.01
PRK08267	260	short chain dehydrogenase; Provisional	98.0
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.99
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.98
PRK06182	273	short chain dehydrogenase; Validated	97.97
PRK07774	250	short chain dehydrogenase; Provisional	97.97
PRK05993	277	short chain dehydrogenase; Provisional	97.96
PRK07856	252	short chain dehydrogenase; Provisional	97.95
PRK08278	273	short chain dehydrogenase; Provisional	97.94
PRK07417	279	arogenate dehydrogenase; Reviewed	97.93
PRK07069	251	short chain dehydrogenase; Validated	97.93
PRK09135	249	pteridine reductase; Provisional	97.92
PRK07067	257	sorbitol dehydrogenase; Provisional	97.92
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.91
PRK08655	437	prephenate dehydrogenase; Provisional	97.91
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.91
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.91
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.91
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.91
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.91
PRK06179	270	short chain dehydrogenase; Provisional	97.91
PRK07326	237	short chain dehydrogenase; Provisional	97.9
PRK12827	249	short chain dehydrogenase; Provisional	97.9
PRK06398	258	aldose dehydrogenase; Validated	97.89
PRK08265	261	short chain dehydrogenase; Provisional	97.89
PRK12937	245	short chain dehydrogenase; Provisional	97.88
PRK07806	248	short chain dehydrogenase; Provisional	97.88
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.88
PRK07985	294	oxidoreductase; Provisional	97.87
PRK07024	257	short chain dehydrogenase; Provisional	97.85
PRK06841	255	short chain dehydrogenase; Provisional	97.84
PLN02688	266	pyrroline-5-carboxylate reductase	97.84
PRK05875	276	short chain dehydrogenase; Provisional	97.84
PRK07814	263	short chain dehydrogenase; Provisional	97.83
PRK06138	252	short chain dehydrogenase; Provisional	97.82
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.82
PRK07576	264	short chain dehydrogenase; Provisional	97.82
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.81
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.81
PRK07577	234	short chain dehydrogenase; Provisional	97.81
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.81
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.8
PRK07680	273	late competence protein ComER; Validated	97.8
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.8
PRK06181	263	short chain dehydrogenase; Provisional	97.79
PRK08263	275	short chain dehydrogenase; Provisional	97.78
PRK06101	240	short chain dehydrogenase; Provisional	97.78
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.78
PRK06172	253	short chain dehydrogenase; Provisional	97.78
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.78
PRK08219	227	short chain dehydrogenase; Provisional	97.78
TIGR01746	367	Thioester-redct thioester reductase domain. It has	97.77
PRK07102	243	short chain dehydrogenase; Provisional	97.77
PRK06128	300	oxidoreductase; Provisional	97.76
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.76
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.76
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.75
PRK06924	251	short chain dehydrogenase; Provisional	97.75
PRK07890	258	short chain dehydrogenase; Provisional	97.75
PRK08264	238	short chain dehydrogenase; Validated	97.75
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.75
PRK12939	250	short chain dehydrogenase; Provisional	97.73
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.73
PRK12828	239	short chain dehydrogenase; Provisional	97.73
PRK12746	254	short chain dehydrogenase; Provisional	97.73
PRK06500	249	short chain dehydrogenase; Provisional	97.72
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.72
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.71
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.71
PRK07578	199	short chain dehydrogenase; Provisional	97.71
PRK06545	359	prephenate dehydrogenase; Validated	97.71
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.7
PRK05866	293	short chain dehydrogenase; Provisional	97.7
PLN02256	304	arogenate dehydrogenase	97.69
PRK06197	306	short chain dehydrogenase; Provisional	97.69
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.69
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.69
PRK06701	290	short chain dehydrogenase; Provisional	97.69
PRK07825	273	short chain dehydrogenase; Provisional	97.69
PRK09009	235	C factor cell-cell signaling protein; Provisional	97.69
PRK05876	275	short chain dehydrogenase; Provisional	97.68
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.68
PLN02996	491	fatty acyl-CoA reductase	97.68
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.68
PRK08226	263	short chain dehydrogenase; Provisional	97.68
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.68
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.68
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.68
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.68
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.68
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	97.67
PRK07023	243	short chain dehydrogenase; Provisional	97.67
PRK12480	330	D-lactate dehydrogenase; Provisional	97.67
PRK06914	280	short chain dehydrogenase; Provisional	97.67
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.67
PRK07060	245	short chain dehydrogenase; Provisional	97.66
PLN00016	378	RNA-binding protein; Provisional	97.66
PRK12742	237	oxidoreductase; Provisional	97.66
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	97.66
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.66
PRK06196	315	oxidoreductase; Provisional	97.65
PRK05884	223	short chain dehydrogenase; Provisional	97.65
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.65
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.65
PRK07074	257	short chain dehydrogenase; Provisional	97.64
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.64
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.64
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.63
PRK06523	260	short chain dehydrogenase; Provisional	97.63
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	97.63
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.63
PRK12935	247	acetoacetyl-CoA reductase; Provisional	97.63
PRK12367	245	short chain dehydrogenase; Provisional	97.62
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.62
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.61
PRK05854	313	short chain dehydrogenase; Provisional	97.61
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.61
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	97.61
PRK05693	274	short chain dehydrogenase; Provisional	97.6
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	97.6
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	97.6
PRK07063	260	short chain dehydrogenase; Provisional	97.6
PRK05650	270	short chain dehydrogenase; Provisional	97.59
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.59
PRK06949	258	short chain dehydrogenase; Provisional	97.58
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.58
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.57
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.57
PRK07478	254	short chain dehydrogenase; Provisional	97.57
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.57
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.56
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.56
PRK08507	275	prephenate dehydrogenase; Validated	97.54
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.53
PRK07832	272	short chain dehydrogenase; Provisional	97.53
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.53
PRK09072	263	short chain dehydrogenase; Provisional	97.53
PRK06198	260	short chain dehydrogenase; Provisional	97.53
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.53
PRK07109	334	short chain dehydrogenase; Provisional	97.52
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.52
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.52
PRK08628	258	short chain dehydrogenase; Provisional	97.51
PRK08818	370	prephenate dehydrogenase; Provisional	97.5
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.5
PRK08177	225	short chain dehydrogenase; Provisional	97.49
PRK12747	252	short chain dehydrogenase; Provisional	97.49
PRK08589	272	short chain dehydrogenase; Validated	97.49
PRK09134	258	short chain dehydrogenase; Provisional	97.49
TIGR02415	254	23BDH acetoin reductases. One member of this famil	97.49
PRK05855	582	short chain dehydrogenase; Validated	97.49
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.49
PRK07035	252	short chain dehydrogenase; Provisional	97.48
PRK09291	257	short chain dehydrogenase; Provisional	97.48
PRK13243	333	glyoxylate reductase; Reviewed	97.47
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.45
PRK07574	385	formate dehydrogenase; Provisional	97.45
PRK12743	256	oxidoreductase; Provisional	97.44
PRK08339	263	short chain dehydrogenase; Provisional	97.44
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.44
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.43
PRK12744	257	short chain dehydrogenase; Provisional	97.43
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.43
PRK06057	255	short chain dehydrogenase; Provisional	97.43
PLN02780	320	ketoreductase/ oxidoreductase	97.43
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.42
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	97.42
PLN02712	667	arogenate dehydrogenase	97.42
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.41
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.39
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	97.39
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.39
PRK14982	340	acyl-ACP reductase; Provisional	97.39
PRK06483	236	dihydromonapterin reductase; Provisional	97.39
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.39
PRK08251	248	short chain dehydrogenase; Provisional	97.38
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.38
PRK09242	257	tropinone reductase; Provisional	97.38
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.38
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.37
PRK07454	241	short chain dehydrogenase; Provisional	97.37
PRK08605	332	D-lactate dehydrogenase; Validated	97.37
PRK08936	261	glucose-1-dehydrogenase; Provisional	97.36
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.36
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.35
PRK05867	253	short chain dehydrogenase; Provisional	97.34
PRK08703	239	short chain dehydrogenase; Provisional	97.33
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.33
PRK06139	330	short chain dehydrogenase; Provisional	97.33
PLN02503	605	fatty acyl-CoA reductase 2	97.32
PRK07775	274	short chain dehydrogenase; Provisional	97.31
PRK06123	248	short chain dehydrogenase; Provisional	97.31
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.3
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.29
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.29
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.29
PRK07904	253	short chain dehydrogenase; Provisional	97.28
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.27
PRK06114	254	short chain dehydrogenase; Provisional	97.26
PRK08017	256	oxidoreductase; Provisional	97.26
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.25
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.25
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.24
PRK06947	248	glucose-1-dehydrogenase; Provisional	97.24
PLN03139	386	formate dehydrogenase; Provisional	97.24
PRK12824	245	acetoacetyl-CoA reductase; Provisional	97.22
PRK12938	246	acetyacetyl-CoA reductase; Provisional	97.22
PRK06484	520	short chain dehydrogenase; Validated	97.21
PRK09186	256	flagellin modification protein A; Provisional	97.21
PRK08324	681	short chain dehydrogenase; Validated	97.21
PLN02712	667	arogenate dehydrogenase	97.21
PRK06953	222	short chain dehydrogenase; Provisional	97.2
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.18
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	97.17
KOG0409	327	consensus Predicted dehydrogenase [General functio	97.17
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	97.15
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.14
PRK05872	296	short chain dehydrogenase; Provisional	97.13
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	97.09
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	97.08
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	97.07
PRK07677	252	short chain dehydrogenase; Provisional	97.07
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	97.07
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.07
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.06
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.06
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.05
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	97.04
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	97.04
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.02
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.01
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	97.0
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	97.0
PRK07201	657	short chain dehydrogenase; Provisional	97.0
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.99
PRK07062	265	short chain dehydrogenase; Provisional	96.99
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.98
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.98
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.96
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.93
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.91
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.9
PRK07791	286	short chain dehydrogenase; Provisional	96.9
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.9
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.89
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.89
PLN02928	347	oxidoreductase family protein	96.89
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.89
PRK07831	262	short chain dehydrogenase; Provisional	96.88
PLN02383	344	aspartate semialdehyde dehydrogenase	96.86
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.85
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.83
PRK06940	275	short chain dehydrogenase; Provisional	96.83
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.83
PRK09496	453	trkA potassium transporter peripheral membrane com	96.82
PRK08862	227	short chain dehydrogenase; Provisional	96.81
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.81
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.79
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.79
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.78
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.78
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.78
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.77
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.74
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.73
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.73
PRK06484	520	short chain dehydrogenase; Validated	96.72
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.72
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	96.71
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.69
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.69
PRK06125	259	short chain dehydrogenase; Provisional	96.69
PRK05599	246	hypothetical protein; Provisional	96.69
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.68
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.67
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.66
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.66
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.65
PLN02494	477	adenosylhomocysteinase	96.64
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.63
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.62
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.62
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.61
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	96.59
PRK06436	303	glycerate dehydrogenase; Provisional	96.58
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.58
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.56
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.56
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	96.54
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.54
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.53
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.53
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.5
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	96.5
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.49
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.49
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.48
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	96.47
PRK06932	314	glycerate dehydrogenase; Provisional	96.47
PRK07041	230	short chain dehydrogenase; Provisional	96.47
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.46
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.46
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.44
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.43
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.42
PRK08303	305	short chain dehydrogenase; Provisional	96.39
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.39
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.38
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.38
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.37
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	96.37
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.32
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	96.32
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.32
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.31
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.31
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.31
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.29
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.28
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.27
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.27
PLN02306	386	hydroxypyruvate reductase	96.27
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.26
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.26
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.25
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.25
PLN02858	1378	fructose-bisphosphate aldolase	96.24
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.23
PRK06487	317	glycerate dehydrogenase; Provisional	96.22
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.2
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	96.2
PRK10669	558	putative cation:proton antiport protein; Provision	96.2
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.18
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	96.18
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.18
PRK06444	197	prephenate dehydrogenase; Provisional	96.18
PLN02858	1378	fructose-bisphosphate aldolase	96.17
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.16
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.16
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.13
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.12
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.11
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.11
PRK08291	330	ectoine utilization protein EutC; Validated	96.09
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.09
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.09
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.07

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=1e-50  Score=370.04  Aligned_cols=216  Identities=70%  Similarity=1.110  Sum_probs=197.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||+|||++|+||+++|+.|+.+++++|++|+|++..+|+++||.|......+.....++|+.++++|||+||+++|.++
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            79999998899999999999999999999999998668899999998633344322133455689999999999999999


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHH
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~  206 (270)
                      ++|++|+|++..|.++++++++.+++++|++++|++|||+|.+++++++++++.++||++||+|+|.|||+|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             hCCCCCccceEEEccC-CCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhc
Q 024248          207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       207 l~v~~~~v~~~V~G~h-g~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      +|+++++|+++||||| |+ ++||+||++.|+.+++++++++|.++|+++|++|+++|
T Consensus       161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  217 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAK  217 (310)
T ss_pred             hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999 67 79999999998766776678999999999999999986

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.7e-49  Score=361.20  Aligned_cols=216  Identities=63%  Similarity=1.027  Sum_probs=193.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK  127 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~~  127 (270)
                      ||+|||++|.||+++|+.|+.+++++|++|+|+++..|+++||.|......+..+...+++.++++|||+||+++|.+++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999988999999999999999999999999988788999999975322232111122445899999999999999999


Q ss_pred             CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       128 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      +|++|++++..|+++++++++.+.+++|+++++++|||+|.+++++++++++.+|||++||||++.|||+||++++|+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CCCCCccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhc
Q 024248          208 GLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       208 ~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      |++|++++++||||||++++||+||+++....++++++++|.++|+++|++|+++|
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  216 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAK  216 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999998689999999973223555668999999999999999985

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=1.2e-48  Score=358.36  Aligned_cols=230  Identities=77%  Similarity=1.203  Sum_probs=211.2

Q ss_pred             cccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC
Q 024248           34 GRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT  113 (270)
Q Consensus        34 ~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~  113 (270)
                      +-+.||++++..+.||+|||++|+||+++++.|+.+++++|++|+|+++..++++||.|+.....+..+..++|+.++++
T Consensus         6 ~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~   85 (323)
T PLN00106          6 SLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALK   85 (323)
T ss_pred             hhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcC
Confidence            34578887777778999999889999999999999999999999999887888999999865445544445677889999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeech
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~  193 (270)
                      |||+||+++|.+++++++|.+++..|.++++++++.+++++|+++++++|||+|.+++++++++++.+++|++|+||++.
T Consensus        86 ~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~  165 (323)
T PLN00106         86 GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTT  165 (323)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhc
Q 024248          194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       194 ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      ||++||++++|+++|+++.+|+++|+||||++++||+||++.|..+++++++++|.++|+++|++|+++|
T Consensus       166 LDs~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  235 (323)
T PLN00106        166 LDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAK  235 (323)
T ss_pred             chHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999987789999999998766767779999999999999999985

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=7.1e-49  Score=342.20  Aligned_cols=217  Identities=24%  Similarity=0.367  Sum_probs=198.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ..||.|+|+ |.||.+++..++.+++++|++|+|.++.  +|+.+||+|...+.....+....|| .+.+++|+||+|||
T Consensus        20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy-~~sa~S~lvIiTAG   97 (332)
T KOG1495|consen   20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDY-SVSANSKLVIITAG   97 (332)
T ss_pred             CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcc-cccCCCcEEEEecC
Confidence            459999998 9999999999999999999999999874  7899999999766544444556688 67899999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      ..+++|++|++++++|+.+++.+++.+.+|.|+++++++|||+|    ++||+.|+.+|||++||||. |+|||+|||++
T Consensus        98 arq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVD----ilTYv~wKLSgfP~nRViGsGcnLDsaRFryL  173 (332)
T KOG1495|consen   98 ARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVD----ILTYVTWKLSGFPKNRVIGSGCNLDSARFRYL  173 (332)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchH----HHHHHHHHHcCCcccceeccCcCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999    78999999999999999999 99999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCC--------CCChhHHHHHHHHHHhhHHHHHhhcCCCCCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSC--------SLTPTEIDYLTDRIQNGGTEVVEVIRGNWSD  269 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~--------~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~  269 (270)
                      ++++||++|++++++|+||||+ +.||+||.++    ++.        +.+++.|+++.++|.+.+++|++.|||++|+
T Consensus       174 i~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGyTswa  251 (332)
T KOG1495|consen  174 IGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGYTSWA  251 (332)
T ss_pred             HHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence            9999999999999999999999 5789999985    221        2467789999999999999999999999886

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=1.3e-48  Score=353.59  Aligned_cols=212  Identities=42%  Similarity=0.662  Sum_probs=190.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC--ChhHHHHhhccccCcceee-eeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~--~~~~~~dl~~~~~~~~~~~-i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +||+|||+ |+||++++++|+.+++.+|++|+|+++  .+|.++||.|+........ +..+.++ ++++|||+||++||
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y-~~~~~aDiVvitAG   78 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDY-EDLKGADIVVITAG   78 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCCh-hhhcCCCEEEEeCC
Confidence            59999998 999999999998888888999999995  4789999999865432221 3333456 78999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .||+||++|+|++..|+++++++++++.+++||++++++|||+|    ++++++++.+|+|++|+||. |.||++||+++
T Consensus        79 ~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD----~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~  154 (313)
T COG0039          79 VPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD----ILTYIAMKFSGFPKNRVIGSGTVLDSARFRTF  154 (313)
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH----HHHHHHHHhcCCCccceecccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    68888899999999999999 89999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCCC----hhHHHHHHHHHHhhHHHHHhhcCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSLT----PTEIDYLTDRIQNGGTEVVEVIRG  265 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~~----~~~~~~i~~~v~~~~~~i~~~k~~  265 (270)
                      +|+++++++++|+++|+||||+ ++||+||+++    |+.++.    ++++++|.++||++|++|++.||+
T Consensus       155 lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~  224 (313)
T COG0039         155 LAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGA  224 (313)
T ss_pred             HHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCc
Confidence            9999999999999999999998 7999999997    665532    356789999999999999999955

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.5e-47  Score=348.01  Aligned_cols=212  Identities=30%  Similarity=0.433  Sum_probs=189.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCc---ceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNA---VVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~---~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ||+|||+ |.||+++|+.|+.+++++|++|+|+++.  +++++||.|...+.   .+. +. ++|+ ++++|||+||++|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~-i~-~~~y-~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTK-IR-AGDY-DDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEE-EE-ECCH-HHhCCCCEEEECC
Confidence            7999998 9999999999999999999999999874  78999999976543   222 33 4577 7899999999999


Q ss_pred             CCCCCCCCc--hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHH
Q 024248          123 GVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (270)
Q Consensus       123 g~~~~~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~  199 (270)
                      |.++++|++  |+|++..|+++++++++.+.+++|+++++++|||+|    ++++++++.+|||++|+||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvD----v~t~~~~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD----IAVYIAATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHH----HHHHHHHHHhCcChhheecccchHHHHHH
Confidence            999999998  699999999999999999999999999999999999    68888899999999999999 99999999


Q ss_pred             HHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC------ChhHHHHHHHHHHhhHHHHHhhcCCCCC
Q 024248          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL------TPTEIDYLTDRIQNGGTEVVEVIRGNWS  268 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~------~~~~~~~i~~~v~~~~~~i~~~k~~~~s  268 (270)
                      ++++|+++|++|++|+++||||||+ ++||+||+++    |+.++      ++.++++|.++|+++|++|+++||.+.+
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~  230 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTNA  230 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCeehH
Confidence            9999999999999999999999998 7999999986    43322      2235789999999999999999977643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=2.1e-46  Score=343.82  Aligned_cols=216  Identities=28%  Similarity=0.379  Sum_probs=189.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCC----ChhHHHHhhcccc-Cc-ceeeeeccCCHHHHhC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-NA-VVRGFLGQQQLEDALT  113 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~----~~~~~~dl~~~~~-~~-~~~~i~~t~d~~~al~  113 (270)
                      +|.||+|||++|+||+++++.|+.+++++     |++|+|+++    .+|+++||.|... .. ... +. ++++ ++++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~-~~~~-~~~~   78 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-AT-TDPE-EAFK   78 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-Ee-cChH-HHhC
Confidence            46799999988999999999999999999     999999964    4789999999862 11 121 22 3455 8899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeeee
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~s-g~p~~kviG~  191 (270)
                      |||+||++||.++++|++|++++..|+++++++++.|++++| +++++++|||+|    ++|+++++.+ |||++||||+
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rViG~  154 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN----TNALIASKNAPDIPPKNFSAM  154 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEe
Confidence            999999999999999999999999999999999999999998 999999999999    6788889999 9999999999


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccc-eEEEccCCCCceeecccccc----CCCCC-ChhH--HHHHHHHHHhhHHHHHhhc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVK----PSCSL-TPTE--IDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~~~~vp~~S~~~----p~~~~-~~~~--~~~i~~~v~~~~~~i~~~k  263 (270)
                      |.||++||++++|+++|++|++|+ .+||||||+ +++|+||+++    |+.++ +++.  +++|.++++++|++|+++|
T Consensus       155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  233 (323)
T TIGR01759       155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR  233 (323)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhcc
Confidence            999999999999999999999995 579999998 7999999996    55443 3333  5789999999999999999


Q ss_pred             CCCCC
Q 024248          264 RGNWS  268 (270)
Q Consensus       264 ~~~~s  268 (270)
                      |++.+
T Consensus       234 G~t~~  238 (323)
T TIGR01759       234 GASSA  238 (323)
T ss_pred             CCcch
Confidence            77654

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=3.3e-46  Score=341.46  Aligned_cols=215  Identities=27%  Similarity=0.377  Sum_probs=192.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+||+|||+ |.||+++++.|+.+++++|++|||+++.  .++++||.|+..+.....+..++|++ +++|||+||+++|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG   80 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAG   80 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCC
Confidence            469999997 9999999999999999999999999874  78899999986443322445567885 6999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .++++|++|++++..|+++++++++.+++++|+++++++|||+|    ++++++++.+|+|++|+||+ |.||+.|++++
T Consensus        81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~  156 (312)
T cd05293          81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYL  156 (312)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH----HHHHHHHHHhCCCHHHEEecCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    68888999999999999999 99999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC--------ChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL--------TPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~--------~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      +|+++++++++|+++||||||+ ++||+||+++    |+.++        +++++++|.++|+++|++|+++||.+.
T Consensus       157 la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~  232 (312)
T cd05293         157 IAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTS  232 (312)
T ss_pred             HHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            9999999999999999999998 6999999996    44332        234588999999999999999997653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=3.5e-45  Score=338.70  Aligned_cols=214  Identities=26%  Similarity=0.411  Sum_probs=190.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +||+|||+ |.||+++++.|+.+++++|++|+|+++.  .++++||.|...+.....+..++|+ ++++|||+||++||.
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~  115 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGA  115 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCC
Confidence            69999997 9999999999999999999999999874  7889999998643221234445677 569999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFV  203 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~l  203 (270)
                      ++++|++|.|++..|+++++++++.|++++|+++++++|||+|    ++++++++.+|||++|+||+ |.||++|+++++
T Consensus       116 ~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvd----v~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~l  191 (350)
T PLN02602        116 RQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVD----VLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLI  191 (350)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHHHHhCCCHHHEEeecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999    67888899999999999999 699999999999


Q ss_pred             HHHhCCCCCccceEEEccCCCCceeecccccc----CCCC--------CChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS--------LTPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       204 A~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~--------~~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      |+++|+++++|+++||||||+ ++||+||+++    |+.+        +++++++++.++++++|++|+++||.+.
T Consensus       192 A~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG~t~  266 (350)
T PLN02602        192 ADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYTS  266 (350)
T ss_pred             HHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence            999999999999999999997 7999999985    4422        3345578999999999999999997653

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-45  Score=338.69  Aligned_cols=216  Identities=23%  Similarity=0.346  Sum_probs=188.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCC----ChhHHHHhhccc-cCc-ceeeeeccCCHHHHhC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMD-TNA-VVRGFLGQQQLEDALT  113 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~----~~~~~~dl~~~~-~~~-~~~~i~~t~d~~~al~  113 (270)
                      +++||+|||++|.||+++++.|...++++     |++|+|+++    ..|+++||.|.. ... .+ .+. ++++ ++++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~i~-~~~y-~~~~   79 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGV-VIT-DDPN-VAFK   79 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCc-EEe-cChH-HHhC
Confidence            45799999988999999999999999999     999999964    378899999985 221 22 232 4455 8899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeeee
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~s-g~p~~kviG~  191 (270)
                      |||+||+++|.++++|++|.+++..|+++++++++.|++++ |+++++++|||+|    ++++++++.+ |||++||||+
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rViG~  155 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN----TNALIAMKNAPDLPAENFTAM  155 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHHHEEee
Confidence            99999999999999999999999999999999999999988 7999999999999    6778888998 9999999999


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceE-EEccCCCCceeecccccc----CCCCC-ChhH--HHHHHHHHHhhHHHHHhhc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVK----PSCSL-TPTE--IDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~-V~G~hg~~~~vp~~S~~~----p~~~~-~~~~--~~~i~~~v~~~~~~i~~~k  263 (270)
                      |.||++||++++|++++++|++|+++ ||||||+ ++||+||+++    |+.++ ++++  +++|.++++++|++|+++|
T Consensus       156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  234 (326)
T PRK05442        156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEAR  234 (326)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCc
Confidence            99999999999999999999999985 5999998 7999999997    55553 3333  5689999999999999999


Q ss_pred             CCCCC
Q 024248          264 RGNWS  268 (270)
Q Consensus       264 ~~~~s  268 (270)
                      |++.+
T Consensus       235 G~t~~  239 (326)
T PRK05442        235 GASSA  239 (326)
T ss_pred             CCccH
Confidence            77653

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.1e-44  Score=329.77  Aligned_cols=209  Identities=25%  Similarity=0.448  Sum_probs=185.4

Q ss_pred             EEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCCCCCC
Q 024248           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVPRK  127 (270)
Q Consensus        51 IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag~~~~  127 (270)
                      |||+ |.||+++++.|+.+++++|++|+|+++.  +++++||.|........ .+. .+++ ++++|||+||+++|.+++
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~~-~~~~daDivVitag~~rk   77 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-SGDY-SDCKDADLVVITAGAPQK   77 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-cCCH-HHHCCCCEEEECCCCCCC
Confidence            6897 9999999999999999999999999874  78999999986432211 233 4566 789999999999999999


Q ss_pred             CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHHHHHH
Q 024248          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEV  206 (270)
Q Consensus       128 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~lA~~  206 (270)
                      +|++|.|++..|+++++++++.+++++|++++|++|||+|    ++++++++.+++|++|++|+ |.||+.|+++++|++
T Consensus        78 ~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~  153 (299)
T TIGR01771        78 PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEK  153 (299)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH----HHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999    68888899999999999999 899999999999999


Q ss_pred             hCCCCCccceEEEccCCCCceeecccccc----CCCCC-------ChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          207 LGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL-------TPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       207 l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~-------~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      +|+++++|+++||||||+ ++||+||+++    |+.++       ++.++++|.++|+++|++|+++||.+.
T Consensus       154 l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~  224 (299)
T TIGR01771       154 LGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATY  224 (299)
T ss_pred             hCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeee
Confidence            999999999999999988 7999999996    54333       123467899999999999999997654

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=8.2e-44  Score=326.12  Aligned_cols=216  Identities=63%  Similarity=1.002  Sum_probs=187.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      +||+|||++|.||+++++.|+.+++++|++|+|++...++++||.|......+..+....++.++++|||+||+++|.++
T Consensus         9 ~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~~~   88 (321)
T PTZ00325          9 FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGVPR   88 (321)
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCCCC
Confidence            39999998899999999999999999999999996668889999997543233222111343589999999999999999


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHH
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~  206 (270)
                      +++++|.+++..|+++++++++.+++++|+++++++|||+|.++++....+++.+++|++++||++.|||+||++++|++
T Consensus        89 ~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~la~~  168 (321)
T PTZ00325         89 KPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEA  168 (321)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999655544433468999999999999889999999999999


Q ss_pred             hCCCCCccceEEEccCCCCceeecccccc-CCCCCChhHHHHHHHHHHhhHHHHHhhcCC
Q 024248          207 LGLDPREVDVPVVGGHAGVTILPLLSQVK-PSCSLTPTEIDYLTDRIQNGGTEVVEVIRG  265 (270)
Q Consensus       207 l~v~~~~v~~~V~G~hg~~~~vp~~S~~~-p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~  265 (270)
                      +|++|++|+++||||||++++||+||++. |   ++++++++|.++|+++|++|+++|+|
T Consensus       169 l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~~---l~~~~~~~i~~~v~~~g~~Ii~~k~~  225 (321)
T PTZ00325        169 LGMNPYDVNVPVVGGHSGVTIVPLLSQTGLS---LPEEQVEQITHRVQVGGDEVVKAKEG  225 (321)
T ss_pred             hCcChhheEEEEEeecCCcccccchhccCCC---CCHHHHHHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999856899999994 4   45567999999999999999998853

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=7.4e-44  Score=326.18  Aligned_cols=215  Identities=61%  Similarity=0.954  Sum_probs=188.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCCC-hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+||||+|.||+++++.+.. .+...+++|+|+++. .++++|+.|......+.. ...+|+.++++++|+||+|+|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~-~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG-FSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE-eCCCCHHHHcCCCCEEEEcCCC
Confidence            7999999999999999998865 567779999999753 456789987521122221 1145766889999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA  204 (270)
                      +++++++|.+++..|+++++++++.|++++|+++++++|||+|.+|+++.+.+++.+|+|++|+||+|.|||+|+++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888888888899999999999998899999999999


Q ss_pred             HHhCCCCCccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhc
Q 024248          205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       205 ~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      +.+|++|++|+++||||||++++||+||++ +-..++++++++|.++|+++|++|+++|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k  217 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAK  217 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999887899999999 3333666679999999999999999998

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.9e-44  Score=314.69  Aligned_cols=225  Identities=72%  Similarity=1.128  Sum_probs=214.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +..||+|.||+|-||+.+.++|..+++++++.|||+....|.+.||.|.++...+..+.+.+.+++++++||+|||.||+
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGV  106 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGV  106 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCCC
Confidence            34599999999999999999999999999999999998899999999998877777777777899999999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA  204 (270)
                      ||+||++|.|++..|..++++++..+.++||++.+.++|||+++++|++++++++..-|++.|++|+|.||.-|.+.+++
T Consensus       107 PRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~  186 (345)
T KOG1494|consen  107 PRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVA  186 (345)
T ss_pred             CCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCC-CccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCCCCC
Q 024248          205 EVLGLDP-REVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWSD  269 (270)
Q Consensus       205 ~~l~v~~-~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~  269 (270)
                      +.++++| .+++++|+|+|.+.|++|++|+.+|...+++++++.++.+++++|.||++.|-|-+|+
T Consensus       187 ~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSA  252 (345)
T KOG1494|consen  187 EVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSA  252 (345)
T ss_pred             HHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCch
Confidence            9999999 5599999999999999999999999888999999999999999999999999999986

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=8.2e-44  Score=326.26  Aligned_cols=214  Identities=26%  Similarity=0.422  Sum_probs=190.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCc-ceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~-~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      .++||+|||+ |.||+++++.|+..++++|++|+|+++.  +++++||.|...+. ... +. ++++ ++++|||+||++
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~-i~-~~~~-~~~~~adivIit   80 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTK-IY-AGDY-SDCKDADLVVIT   80 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeE-EE-eCCH-HHhCCCCEEEEe
Confidence            3469999998 9999999999999999999999999874  68899999986432 222 33 4566 679999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~  200 (270)
                      +|.++++|++|.+++..|+++++++++.+++++|+++++++|||+|    ++++++++.+|+|++|+||+ |.||+.|++
T Consensus        81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d----~~~~~~~k~sg~p~~~viG~gt~LDs~R~~  156 (315)
T PRK00066         81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----ILTYATWKLSGFPKERVIGSGTSLDSARFR  156 (315)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHH----HHHHHHHHHhCCCHHHEeecCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    67788888899999999999 799999999


Q ss_pred             HHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-------CChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-------LTPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-------~~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      +++|+++|+++++|+++||||||+ +++|+||+++    |+.+       +++++++++.++++++|++|+++||.+.
T Consensus       157 ~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~t~  233 (315)
T PRK00066        157 YMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGATY  233 (315)
T ss_pred             HHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCeeh
Confidence            999999999999999999999988 6999999996    3322       4456688999999999999999997654

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=4.3e-44  Score=338.55  Aligned_cols=217  Identities=24%  Similarity=0.309  Sum_probs=189.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-------CCccEEEEEeCCCC--hhHHHHhhccccCcceeeee-ccCCHHHHhC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLEDALT  113 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~-------g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~-~t~d~~~al~  113 (270)
                      .++.||+|||++|+||+++++.|+.+       +++.||+++|+++.  +|+++||.|... +.+..+. .++++ ++++
T Consensus        98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~-~~~~~v~i~~~~y-e~~k  175 (444)
T PLN00112         98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY-PLLREVSIGIDPY-EVFQ  175 (444)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh-hhcCceEEecCCH-HHhC
Confidence            34579999998899999999999998       77779999999874  788999999852 2111222 34566 7899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhH-hCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-  191 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-  191 (270)
                      |||+||+++|.++++|++|+|++..|.++++++++.|.+ ++|++++|++|||+|    ++++++++.+|++++|+||+ 
T Consensus       176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD----v~t~v~~k~sg~~~~rViGtg  251 (444)
T PLN00112        176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN----TNALICLKNAPNIPAKNFHAL  251 (444)
T ss_pred             cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH----HHHHHHHHHcCCCCcceEEee
Confidence            999999999999999999999999999999999999999 589999999999999    67888899999999999999 


Q ss_pred             chhhHHHHHHHHHHHhCCCCCcc-ceEEEccCCCCceeecccccc----CCCCC-ChhH--HHHHHHHHHhhHHHHHhhc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVK----PSCSL-TPTE--IDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v-~~~V~G~hg~~~~vp~~S~~~----p~~~~-~~~~--~~~i~~~v~~~~~~i~~~k  263 (270)
                      |.||++||+++||+++|+++++| +++||||||+ ++||+||+++    |+.++ .+++  +++|.++|+++|++|+++|
T Consensus       252 T~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~k  330 (444)
T PLN00112        252 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKW  330 (444)
T ss_pred             ccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhcc
Confidence            89999999999999999999999 6699999998 7999999996    55443 2223  6789999999999999998


Q ss_pred             CCCC
Q 024248          264 RGNW  267 (270)
Q Consensus       264 ~~~~  267 (270)
                      |+++
T Consensus       331 G~t~  334 (444)
T PLN00112        331 GRSS  334 (444)
T ss_pred             Cchh
Confidence            8654

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=6e-44  Score=333.04  Aligned_cols=217  Identities=24%  Similarity=0.333  Sum_probs=186.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEE--eCCCC--hhHHHHhhccccCcceeeee-ccCCHHHHhC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVNT--PGVTADISHMDTNAVVRGFL-GQQQLEDALT  113 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~Lv--D~~~~--~~~~~dl~~~~~~~~~~~i~-~t~d~~~al~  113 (270)
                      .++.||+|||++|+||+++++.|+..++++     +++|+  |+++.  +++++||.|... +.+..+. .++++ ++++
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~-~~~~~v~i~~~~y-~~~k  119 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY-PLLREVSIGIDPY-EVFE  119 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh-hhcCceEEecCCH-HHhC
Confidence            446799999988999999999999999998     56667  65553  788999999852 2111222 24565 8899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-  191 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-  191 (270)
                      |||+||+++|.|+++|++|.+++..|+++++++++.|++++ |++++|++|||+|    ++|+++++.+++|++|+||+ 
T Consensus       120 daDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD----v~t~v~~k~sg~~~~rviG~g  195 (387)
T TIGR01757       120 DADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN----TNALIAMKNAPNIPRKNFHAL  195 (387)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH----HHHHHHHHHcCCCcccEEEec
Confidence            99999999999999999999999999999999999999977 9999999999999    67888889999999999999 


Q ss_pred             chhhHHHHHHHHHHHhCCCCCcc-ceEEEccCCCCceeecccccc----CCCCC-ChhH--HHHHHHHHHhhHHHHHhhc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVK----PSCSL-TPTE--IDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v-~~~V~G~hg~~~~vp~~S~~~----p~~~~-~~~~--~~~i~~~v~~~~~~i~~~k  263 (270)
                      |.||++||+++||+++++++++| +++||||||+ ++||+||+++    |+.++ .+.+  +++|.++|+++|++|+++|
T Consensus       196 T~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~K  274 (387)
T TIGR01757       196 TRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKW  274 (387)
T ss_pred             chhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhcc
Confidence            89999999999999999999999 5999999998 7999999996    66543 2223  6789999999999999998


Q ss_pred             CCCC
Q 024248          264 RGNW  267 (270)
Q Consensus       264 ~~~~  267 (270)
                      |.+.
T Consensus       275 G~t~  278 (387)
T TIGR01757       275 GRSS  278 (387)
T ss_pred             Cchh
Confidence            7554

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=5.5e-44  Score=328.13  Aligned_cols=214  Identities=31%  Similarity=0.435  Sum_probs=185.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCC--C--hhHHHHhhcccc-C-cceeeeeccCCHHHHhCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN--T--PGVTADISHMDT-N-AVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~--~--~~~~~dl~~~~~-~-~~~~~i~~t~d~~~al~~A  115 (270)
                      .||+||||+|+||+++++.|+.+++++     +++|+|+++  .  +++++||.|... . ... .+.  .+..++++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~i~--~~~~~~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-VIT--TDPEEAFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-EEe--cChHHHhCCC
Confidence            389999988999999999999999988     499999986  3  678899999842 1 112 222  3445899999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCC-CCCCCeeeech
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT-YDPKRLLGVTM  193 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg-~p~~kviG~t~  193 (270)
                      |+||++||.++++|++|.+++..|+++++++++.|++++ |+++++++|||+|    ++++++++.+| +|++||||+|.
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~vig~t~  153 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN----TNALIALKNAPNLPPKNFTALTR  153 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEeeH
Confidence            999999999999999999999999999999999999996 9999999999999    67888899999 59999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCcc-ceEEEccCCCCceeecccccc----CCCCC----ChhH--HHHHHHHHHhhHHHHHhh
Q 024248          194 LDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVK----PSCSL----TPTE--IDYLTDRIQNGGTEVVEV  262 (270)
Q Consensus       194 ldt~r~~~~lA~~l~v~~~~v-~~~V~G~hg~~~~vp~~S~~~----p~~~~----~~~~--~~~i~~~v~~~~~~i~~~  262 (270)
                      |||+||++++|++++++|++| .++||||||+ +++|+||+++    |+.++    .+++  .++|.++++++|++|+++
T Consensus       154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~  232 (323)
T cd00704         154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK  232 (323)
T ss_pred             HHHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc
Confidence            999999999999999999999 5699999999 7999999996    54332    1223  578999999999999999


Q ss_pred             cCCCCC
Q 024248          263 IRGNWS  268 (270)
Q Consensus       263 k~~~~s  268 (270)
                      ||++.+
T Consensus       233 kg~t~~  238 (323)
T cd00704         233 RGASSA  238 (323)
T ss_pred             cCcchh
Confidence            987654

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=1e-43  Score=326.17  Aligned_cols=216  Identities=23%  Similarity=0.349  Sum_probs=188.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCC----ChhHHHHhhcccc-C-cceeeeeccCCHHHHhC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALT  113 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~----~~~~~~dl~~~~~-~-~~~~~i~~t~d~~~al~  113 (270)
                      +++||+|||++|+||+++++.|+.+++++     |++|+|+++    +.|+++||.|... . ..+. +. +.++ ++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~-~~~~-~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIV-IT-DDPN-VAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceE-Ee-cCcH-HHhC
Confidence            46799999988999999999999999999     999999954    3688999999852 2 2222 32 4455 8899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeeee
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~s-g~p~~kviG~  191 (270)
                      |||+||++||.++++|++|.+++..|+++++++++.|++++ |++++|++|||+|    ++++++++.+ +||+++|||+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~ViG~  153 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN----TNALIAMKNAPDIPPDNFTAM  153 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH----HHHHHHHHHcCCCChHheEEe
Confidence            99999999999999999999999999999999999999999 5999999999999    6777888898 4999999999


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccce-EEEccCCCCceeecccccc----CCCC-CChhH--HHHHHHHHHhhHHHHHhhc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVK----PSCS-LTPTE--IDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~--~~~i~~~v~~~~~~i~~~k  263 (270)
                      |.||++||++.+|+++|++++++++ +||||||+ ++||+||++.    |+.+ +.+.+  +++|.++++++|++|+++|
T Consensus       154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  232 (322)
T cd01338         154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR  232 (322)
T ss_pred             hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCc
Confidence            9999999999999999999999997 66999988 7999999986    5544 34433  5789999999999999999


Q ss_pred             CCCCC
Q 024248          264 RGNWS  268 (270)
Q Consensus       264 ~~~~s  268 (270)
                      |++.+
T Consensus       233 G~t~~  237 (322)
T cd01338         233 GASSA  237 (322)
T ss_pred             CCccH
Confidence            77653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=7.9e-43  Score=318.79  Aligned_cols=213  Identities=29%  Similarity=0.427  Sum_probs=186.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +||+|||+ |.+|+++++.|+..|++.+|+|+|+++.  ++.++||.|........ .+. +.++ +++++||+||+++|
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~~~~-~~l~~aDIVIitag   77 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-AGDY-SDCKDADIVVITAG   77 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-cCCH-HHhCCCCEEEEccC
Confidence            48999997 9999999999999998889999999875  56788998874321111 122 3566 56999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .++++|++|.+++..|+++++++++.+++++|+++++++|||+|    ++++++++.++||++||||+ |.||++|++++
T Consensus        78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d----~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~  153 (306)
T cd05291          78 APQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRA  153 (306)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH----HHHHHHHHHhCcCHHHEeeccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    68888899999999999999 89999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      +|+++++++++|+++||||||+ +++|+||+++    |+.+      +.+++++++.++++++|++|+++||.+.
T Consensus       154 la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~  227 (306)
T cd05291         154 LAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATY  227 (306)
T ss_pred             HHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccH
Confidence            9999999999999999999998 7999999986    4422      3355688999999999999999997664

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=7.3e-43  Score=318.19  Aligned_cols=212  Identities=31%  Similarity=0.497  Sum_probs=188.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |+|||+ |.||+++++.++..++++||+|+|+++.  .++++||.|.........+..++|+ +++++||+||+++|.|+
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~-~~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDY-ADAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCH-HHhCCCCEEEEcCCCCC
Confidence            589998 9999999999999999999999999874  6788999998643221123334566 68999999999999999


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHHHHH
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAE  205 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~lA~  205 (270)
                      +++++|.+++..|+++++++++.+++++|+++++++|||+|    ++++++++.+|+|++|++|+ |.||+.|+++++|+
T Consensus        79 ~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d----~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~  154 (300)
T cd00300          79 KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAE  154 (300)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHH----HHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999    68888899999999999999 79999999999999


Q ss_pred             HhCCCCCccceEEEccCCCCceeecccccc----CCCCC---ChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          206 VLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL---TPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       206 ~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~---~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      ++++++++|+++|+||||+ ++||+||+++    |+.++   +++++++|.+++++++++|+++||++.
T Consensus       155 ~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~  222 (300)
T cd00300         155 KLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATN  222 (300)
T ss_pred             HhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcch
Confidence            9999999999999999988 6999999996    65432   345578999999999999999997664

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=3e-42  Score=314.72  Aligned_cols=209  Identities=32%  Similarity=0.559  Sum_probs=184.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcce-eeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVV-RGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~-~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||+ |+||+.+|+.++..|+. +|+++|+++.  .++++|+.+....... ..+..++|++ ++++||+||+++|
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~-~~~~aDiVIitag   78 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA-DTANSDIVVITAG   78 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH-HhCCCCEEEEcCC
Confidence            69999998 99999999999999987 7999999764  4566777765432211 2344567885 4999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .|+++|++|++++..|+++++++++.+.+++|++++|++|||+|    ++++++++.+|+|++|+||+ |.|||+|++++
T Consensus        79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~d----i~t~~~~~~sg~~~~rviG~g~~lds~R~~~~  154 (305)
T TIGR01763        79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD----AMTYVAWQKSGFPKERVIGQAGVLDSARFRTF  154 (305)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHEEEeccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    78888999999999999999 59999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHhhc
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      +|+++++++++|+++||||||+ ++||+||+++    |+.+ ++++++++|.++++++|++|+++|
T Consensus       155 la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~  219 (305)
T TIGR01763       155 IAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL  219 (305)
T ss_pred             HHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998 6899999986    5544 344558899999999999999974

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.2e-41  Score=312.87  Aligned_cols=213  Identities=26%  Similarity=0.374  Sum_probs=182.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCC----ChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~----~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvV  118 (270)
                      ||+||||+|.||+++++.|..+++++     +++|+|+++    ++++++||.|..... ...+..+++..++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~-~~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPL-LDGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchh-cCceeccCChHHHhCCCCEE
Confidence            69999988999999999999988875     799999964    357889999986221 12233343545889999999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhH
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDV  196 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt  196 (270)
                      |++||.+++++++|.+++..|+++++++++.|++++ |++++|++|||+|    ++|+++++.+++++.++||+ |.|||
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN----TNALVLSNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 9999999999999    67888899998888889999 89999


Q ss_pred             HHHHHHHHHHhCCCCCccc-eEEEccCCCCceeeccccccCC--------CC-CChhH--HHHHHHHHHhhHHHHHhhcC
Q 024248          197 VRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS--------CS-LTPTE--IDYLTDRIQNGGTEVVEVIR  264 (270)
Q Consensus       197 ~r~~~~lA~~l~v~~~~v~-~~V~G~hg~~~~vp~~S~~~p~--------~~-~~~~~--~~~i~~~v~~~~~~i~~~k~  264 (270)
                      +||++++|++++++|++|+ ++||||||+ ++||+||+++..        .+ +.+++  +++|.++++++|++|+++||
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~  234 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARK  234 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccC
Confidence            9999999999999999995 699999999 799999999533        22 22222  57899999999999999877


Q ss_pred             CC
Q 024248          265 GN  266 (270)
Q Consensus       265 ~~  266 (270)
                      |+
T Consensus       235 ~~  236 (324)
T TIGR01758       235 LS  236 (324)
T ss_pred             CC
Confidence            54

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-41  Score=308.87  Aligned_cols=210  Identities=34%  Similarity=0.591  Sum_probs=185.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcce-eeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVV-RGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~-~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      +.+||+|||| |.||+++++.++..++ .+|+|+|++++  .++++|+.|....... ..+..++|++ +++|||+||++
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVit   80 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVIT   80 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEEC
Confidence            5679999998 9999999999999997 58999999874  5778899887432221 1344567885 89999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec-hhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t-~ldt~r~~  200 (270)
                      +|.+++++++|.|++..|.++++++++.++++||+++++++|||+|    ++++.+++.+++|++|++|+| .||++|++
T Consensus        81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d----i~t~~~~~~s~~p~~rviG~gt~lds~R~~  156 (319)
T PTZ00117         81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFR  156 (319)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHhhCCCcccEEEecchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    678888899999999999995 99999999


Q ss_pred             HHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHhh
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVEV  262 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~~  262 (270)
                      +++|+++|++|++++++|+||||+ ++||+||+++    |+.+      +++++++++.++++++|++|+++
T Consensus       157 ~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~  227 (319)
T PTZ00117        157 CNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL  227 (319)
T ss_pred             HHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999988 7999999995    4322      45666889999999999999997

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=3.8e-41  Score=307.94  Aligned_cols=212  Identities=30%  Similarity=0.482  Sum_probs=187.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||+ |.||+++++.|+.+|++.+|+|+|+++.  .+++.|+.|.... .... + .++|+ +++++||+||++++
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~-i-~~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVR-I-YAGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeE-E-eeCCH-HHhCCCCEEEEccC
Confidence            79999998 9999999999999998889999999874  5688899987432 2222 2 24677 67999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .+++++++|.+++..|+++++++++.+++++|+++++++|||+|    ++++++++.+|||++||||+ |.||+.|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d----~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999    67888889999999999999 89999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCC--------CCChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSC--------SLTPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~--------~~~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      +|+++++++++|+++||||||+ +++|+||+++    |+.        .++++++++|.++++++|++|+++||.+.
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence            9999999999999999999998 6999999986    432        23445688999999999999999997653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=5.6e-41  Score=308.22  Aligned_cols=211  Identities=34%  Similarity=0.661  Sum_probs=185.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcc-eeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~-~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      +.+||+|||+ |.||+++++.++..++. +|+|+|+++.  .++++|+.|...... ...+..++|+ ++++|||+||++
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t   81 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT   81 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence            4569999997 99999999999999984 6999999875  567888888643221 1234556788 689999999999


Q ss_pred             CCCCCCCCC-----chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec-hhh
Q 024248          122 AGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLD  195 (270)
Q Consensus       122 ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t-~ld  195 (270)
                      +|.++++++     +|.+++..|+++++++++.+++++|++++|++|||+|    ++++.+++.+++|++|++|+| .||
T Consensus        82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d----i~t~~~~~~sg~p~~rviGlgt~ld  157 (321)
T PTZ00082         82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD----VMVKLLQEHSGLPKNKVCGMAGVLD  157 (321)
T ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHhcCCChhhEEEecCccc
Confidence            999999999     9999999999999999999999999999999999999    678888999999999999995 999


Q ss_pred             HHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHhhc
Q 024248          196 VVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       196 t~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      +.|+++.+|+++|+++++++++|+||||+ ++||+||+++    |+.+      ++++++++|.++++++|++|+++|
T Consensus       158 s~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~  234 (321)
T PTZ00082        158 SSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL  234 (321)
T ss_pred             HHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999988 7999999986    4422      455668899999999999999975

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=4.6e-41  Score=307.48  Aligned_cols=216  Identities=29%  Similarity=0.482  Sum_probs=188.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC----ChhHHHHhhccccCcc-eeeeeccCCHHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~----~~~~~~dl~~~~~~~~-~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      |||+|+|++|++|++++..|+..|+.++|+++|+++    ..+..+|+.|...... ...+..++|+ +++++||+||++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            799999988999999999999999988999999954    2566788887632211 1124445676 569999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~  200 (270)
                      +|.|++++++|.+++..|+++++++++.|.+++|++++|+++||+|    ++++++++.+++|++|+||+ |.||+.|++
T Consensus        80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd----~~t~~~~~~~g~~~~~viG~gt~LDs~R~~  155 (309)
T cd05294          80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVD----VMTYKALKESGFDKNRVFGLGTHLDSLRFK  155 (309)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHhcCCCHHHEeeccchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    67788889999999999999 799999999


Q ss_pred             HHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC---ChhHHHHHHHHHHhhHHHHHhhcCCCCC
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL---TPTEIDYLTDRIQNGGTEVVEVIRGNWS  268 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~---~~~~~~~i~~~v~~~~~~i~~~k~~~~s  268 (270)
                      ++||+++++++++|+++|+||||+ ++||+||+++    |+.++   .+.++++|.++++++|++|+++||++.+
T Consensus       156 ~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t~~  229 (309)
T cd05294         156 VAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGSEY  229 (309)
T ss_pred             HHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            999999999999999999999998 6999999996    54332   2455788999999999999999998754

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=1.2e-40  Score=306.55  Aligned_cols=215  Identities=26%  Similarity=0.392  Sum_probs=180.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCC----ChhHHHHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~----~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      +|.||+||||+|+||+++++.|+.+++++     +|+|+|+++    ..++++|+.|.... ....+..++++.++++||
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~-~~~~~~~~~~~~~~l~~a   79 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFP-LLKSVVATTDPEEAFKDV   79 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhcccc-ccCCceecCCHHHHhCCC
Confidence            46799999999999999999999988775     999999964    35667899887421 111122345777899999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHh-CCCCCCCeeee-c
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV-GTYDPKRLLGV-T  192 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~-sg~p~~kviG~-t  192 (270)
                      |+||++||.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|    ++++++++. +++|+++ ||+ |
T Consensus        80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~~~~~~~~~-ig~gt  154 (325)
T cd01336          80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN----TNALILLKYAPSIPKEN-FTALT  154 (325)
T ss_pred             CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH----HHHHHHHHHcCCCCHHH-EEeee
Confidence            999999999999999999999999999999999999997 7999999999999    677778888 4777777 777 8


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccc-eEEEccCCCCceeecccccc--------CCCCC-ChhH--HHHHHHHHHhhHHHHH
Q 024248          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVK--------PSCSL-TPTE--IDYLTDRIQNGGTEVV  260 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~~~~vp~~S~~~--------p~~~~-~~~~--~~~i~~~v~~~~~~i~  260 (270)
                      .||++||++++|+++++++++|+ .+||||||+ ++||+||+++        |+.++ ++++  +++|.++++++|++|+
T Consensus       155 ~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii  233 (325)
T cd01336         155 RLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVI  233 (325)
T ss_pred             hHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHH
Confidence            99999999999999999999996 569999999 7999999985        33332 2222  5789999999999999


Q ss_pred             hhcCCC
Q 024248          261 EVIRGN  266 (270)
Q Consensus       261 ~~k~~~  266 (270)
                      ++|+|+
T Consensus       234 ~~~~g~  239 (325)
T cd01336         234 KARKLS  239 (325)
T ss_pred             Hccccc
Confidence            986554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=9e-40  Score=298.44  Aligned_cols=208  Identities=37%  Similarity=0.643  Sum_probs=183.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcc-eeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~-~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||+ |.||+++++.++..++. +|+|+|++++  ++..+|+.+...... ...+..++|+ +++++||+||+++|
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            69999998 99999999999999987 9999999874  566778777632211 1124456788 67999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .|+++|++|.+++.+|+++++++++.+++++|++++|++|||+|    ++++++++.+++|++|++|+ |.||++||+++
T Consensus        80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d----~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~  155 (307)
T PRK06223         80 VPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD----AMTYVALKESGFPKNRVIGMAGVLDSARFRTF  155 (307)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCcccEEEeCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    68888889999999999999 59999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHhh
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVEV  262 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~~  262 (270)
                      ||+++++++++|+++|+||||+ +++|+||+++    |+.+ ++++.+++|.++++..+++|++.
T Consensus       156 la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~  219 (307)
T PRK06223        156 IAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGL  219 (307)
T ss_pred             HHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999988 7999999995    5443 45555789999999999999997

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=3.3e-39  Score=294.11  Aligned_cols=207  Identities=37%  Similarity=0.658  Sum_probs=181.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCc-ceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~-~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      |+|||+ |.||+.+++.++..+++ +|+|+|+++.  .++.+|+.+..... ....+..++|+ +++++||+||+++|.|
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p   77 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCC
Confidence            689998 99999999999999988 9999999875  45667777653211 11224456676 6799999999999999


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec-hhhHHHHHHHHH
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVA  204 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t-~ldt~r~~~~lA  204 (270)
                      ++++++|.+++.+|+++++++++.+++++|++++|++|||+|    ++++++++.+++|++|++|+| .+|++|+++++|
T Consensus        78 ~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~d----i~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la  153 (300)
T cd01339          78 RKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD----VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIA  153 (300)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999    688888899999999999995 999999999999


Q ss_pred             HHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHhhc
Q 024248          205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       205 ~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      +++++++++|+++|+||||+ +++|+||+++    |+.+ ++++++++|.+++++++++|+++|
T Consensus       154 ~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k  216 (300)
T cd01339         154 EELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL  216 (300)
T ss_pred             HHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999988 6999999996    5443 345568999999999999999977

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=1.2e-37  Score=284.02  Aligned_cols=187  Identities=25%  Similarity=0.425  Sum_probs=160.7

Q ss_pred             EEEEEeCCC--C--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHH
Q 024248           74 VLHLYDVVN--T--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG  149 (270)
Q Consensus        74 eV~LvD~~~--~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~  149 (270)
                      .++|+|+++  .  .++++||.|+.. +....+..+++..++++|||+||++||.++++|++|.+++..|+++++++++.
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~-~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~   93 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASA   93 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhH-HhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            899999987  4  678999999852 11112333456348899999999999999999999999999999999999999


Q ss_pred             HhHh-CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHHHHHHhCCCCCcc-ceEEEccCCCCc
Q 024248          150 IAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVT  226 (270)
Q Consensus       150 i~~~-~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~lA~~l~v~~~~v-~~~V~G~hg~~~  226 (270)
                      |.++ +|+++++++|||+|    ++++++++.+++|++|+||+ |.|||+||++++|+++++++++| +++||||||+ +
T Consensus        94 i~~~~~p~aivivvsNPvD----v~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~-s  168 (309)
T PLN00135         94 LEKHAAPDCKVLVVANPAN----TNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS-T  168 (309)
T ss_pred             HHHhcCCCeEEEEeCCcHH----HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC-c
Confidence            9996 89999999999999    67888899999999999999 89999999999999999999999 7899999999 6


Q ss_pred             eeeccccccC--------CCCC-ChhH--HHHHHHHHHhhHHHHHhhcCCC
Q 024248          227 ILPLLSQVKP--------SCSL-TPTE--IDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       227 ~vp~~S~~~p--------~~~~-~~~~--~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +||+||+++.        +.++ .+++  +++|.++++++|++|+++|+|+
T Consensus       169 ~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~  219 (309)
T PLN00135        169 QYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLS  219 (309)
T ss_pred             eeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCcc
Confidence            9999999853        3332 3333  5789999999999999985443

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=4.3e-37  Score=290.94  Aligned_cols=212  Identities=16%  Similarity=0.221  Sum_probs=175.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCC--C--ChhHHHHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVV--N--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~--~--~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      ++.+|+|+||+|.+|+++.+.++...+++     .++|+|+.  +  .+|+++||.|+. ++.+..+..+++..++++||
T Consensus       122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a-~pll~~v~i~~~~~ea~~da  200 (452)
T cd05295         122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLA-FPLLRGISVTTDLDVAFKDA  200 (452)
T ss_pred             CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhH-HhhcCCcEEEECCHHHhCCC
Confidence            45699999999999999999999866554     69999994  3  378899999985 22222111223445899999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC--CCEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeeeec
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGVT  192 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~sNPv~~~~~i~t~~~~~~s-g~p~~kviG~t  192 (270)
                      |+||+++|.|+++|++|.|++..|.++++++++.|.+++|  ++++|++|||+|    ++++++++.+ ++|++||+|++
T Consensus       201 DvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD----~~t~i~~k~apgiP~~rVig~g  276 (452)
T cd05295         201 HVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN----LKTSILIKYAPSIPRKNIIAVA  276 (452)
T ss_pred             CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEec
Confidence            9999999999999999999999999999999999999999  889999999999    5666677777 99999999997


Q ss_pred             hhhHHHHHHHHHHHhCCCCCcc-ceEEEccCCCCceeecccccc----------------CCCCC-ChhH--HHHHHHHH
Q 024248          193 MLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVK----------------PSCSL-TPTE--IDYLTDRI  252 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v-~~~V~G~hg~~~~vp~~S~~~----------------p~~~~-~~~~--~~~i~~~v  252 (270)
                      .+|++|++++||+++|+++++| +++||||||+ ++||+||+++                |+.++ .+++  .+++.+.|
T Consensus       277 tlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v  355 (452)
T cd05295         277 RLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATL  355 (452)
T ss_pred             chHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHH
Confidence            7889999999999999999999 6799999998 7999999994                22222 2333  35688889


Q ss_pred             HhhHHHHHhhcCC
Q 024248          253 QNGGTEVVEVIRG  265 (270)
Q Consensus       253 ~~~~~~i~~~k~~  265 (270)
                      ++++.   ++||.
T Consensus       356 ~~rg~---~rkgs  365 (452)
T cd05295         356 KSLSS---SLNHE  365 (452)
T ss_pred             HHHHH---hccCC
Confidence            98888   55543

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=1.5e-36  Score=271.70  Aligned_cols=182  Identities=35%  Similarity=0.526  Sum_probs=163.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCC--CccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g--~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |+||||+|.+|.++++.|+..+  ...+|+|+|++++  ++.++|+.|.........+..++|++++++|||+||+++|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            6899988999999999999999  7779999999874  56778888875332112345677877999999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA  204 (270)
                      ++++|++|.+++.+|+++++++++.++++||++|++++|||+|    ++++++++.+|+|+.|+||+|.+|+.|+++++|
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d----~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la  156 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILA  156 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCchhEEEeecchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999    688888999999999999995599999999999


Q ss_pred             HHhCCCCCccceEEEccCCCCceeecccccc
Q 024248          205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVK  235 (270)
Q Consensus       205 ~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~  235 (270)
                      +++++++++|+++|||+||+ +++|+||+++
T Consensus       157 ~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~  186 (263)
T cd00650         157 EKLGVDPDDVKVYILGEHGG-SQVPDWSTVR  186 (263)
T ss_pred             HHhCCCccceEEEEEEcCCC-ceEeccccch
Confidence            99999999999999999998 6899999874

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=2.1e-36  Score=276.52  Aligned_cols=192  Identities=23%  Similarity=0.280  Sum_probs=162.7

Q ss_pred             hCCCccEEEEEeCCC--C--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHH
Q 024248           68 INPLVSVLHLYDVVN--T--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIV  143 (270)
Q Consensus        68 ~~g~~~eV~LvD~~~--~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~  143 (270)
                      .+++  .++|+|+++  .  +|+++||.|+. .+.......+++++++++|||+||++||.++++|++|.+++..|++++
T Consensus        13 ~~~~--~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~   89 (313)
T TIGR01756        13 NRPV--CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIF   89 (313)
T ss_pred             CCeE--EEEEecCCCccchhHhHHHHHHHhc-cccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence            3455  899999987  3  67899999986 443322223568878999999999999999999999999999999999


Q ss_pred             HHHHHHHhHhCCC-CEEEEecCCCCCcHHHHHHHH-HHhCCCCCCCeeee-chhhHHHHHHHHHHHhCCCCCccce-EEE
Q 024248          144 KTLCEGIAKCCPK-AIVNLISNPVNSTVPIAAEVF-KKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV-PVV  219 (270)
Q Consensus       144 ~~i~~~i~~~~p~-a~viv~sNPv~~~~~i~t~~~-~~~sg~p~~kviG~-t~ldt~r~~~~lA~~l~v~~~~v~~-~V~  219 (270)
                      +++++.|++++|+ +++|++|||+|    ++++++ ++.+|||++ +||+ |.|||+||++++|++++++|++|+. +||
T Consensus        90 ~~i~~~i~~~a~~~~ivivvtNPvD----v~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~  164 (313)
T TIGR01756        90 KATGEALSEYAKPTVKVLVIGNPVN----TNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVW  164 (313)
T ss_pred             HHHHHHHHhhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEE
Confidence            9999999999965 78999999999    577777 699999999 9999 8999999999999999999999965 599


Q ss_pred             ccCCCCceeeccccccC------CCC---CChh-HHHHHHHHHHhhHHHHHhhcCCCCC
Q 024248          220 GGHAGVTILPLLSQVKP------SCS---LTPT-EIDYLTDRIQNGGTEVVEVIRGNWS  268 (270)
Q Consensus       220 G~hg~~~~vp~~S~~~p------~~~---~~~~-~~~~i~~~v~~~~~~i~~~k~~~~s  268 (270)
                      ||||+ ++||+||+++.      +..   ++++ .+++|.++|+++|++|+++||++.+
T Consensus       165 GeHG~-s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~  222 (313)
T TIGR01756       165 GNHAE-SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGFTSA  222 (313)
T ss_pred             ECCCC-ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCcCCcch
Confidence            99998 69999999952      221   2331 3678999999999999999987643

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.97  E-value=2.3e-31  Score=217.36  Aligned_cols=139  Identities=40%  Similarity=0.639  Sum_probs=124.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC--ChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~--~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+|||++|.||+++++.|+.+++++|++|+|+++  .+++++||.|..............++ ++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~-~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDY-EALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSG-GGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccc-cccccccEEEEeccc
Confidence            799999988999999999999999999999999986  47889999998654433332334455 889999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      ++++|++|.+++..|+++++++++.+.+++|+++++++|||+|    ++++++++.++||++|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd----~~t~~~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD----VMTYVAQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH----HHHHHHHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH----HHHHHHHHhhCcCcccCcC
Confidence            9999999999999999999999999999999999999999999    7899999999999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=99.96  E-value=1e-29  Score=219.18  Aligned_cols=218  Identities=26%  Similarity=0.401  Sum_probs=188.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCCC----hhHHHHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT----PGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~~----~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      ++.+|+|+||+|.||.++.+.++....++     .++|+|+...    +|..++|.|+ .+|.++.+..++|..++++|.
T Consensus         3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~-a~PlL~~Vvattd~~~afkdv   81 (332)
T KOG1496|consen    3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDC-ALPLLKGVVATTDEVEAFKDV   81 (332)
T ss_pred             CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhh-hhhHHHhhhcccChhhhhccC
Confidence            35689999999999999999887642221     8899999762    6778899998 467777666788999999999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechh
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~l  194 (270)
                      |+.|+..+.|+++|++|.|++..|..+++.-..++++|+ |+..+++++||+++++.++.   +.+..+|.+++-++|.|
T Consensus        82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL  158 (332)
T KOG1496|consen   82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL  158 (332)
T ss_pred             cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence            999999999999999999999999999999999999998 89999999999999876665   45667899999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCcc-ceEEEccCCCCceeecccccc--------CCCC-CChhHH--HHHHHHHHhhHHHHHhh
Q 024248          195 DVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVK--------PSCS-LTPTEI--DYLTDRIQNGGTEVVEV  262 (270)
Q Consensus       195 dt~r~~~~lA~~l~v~~~~v-~~~V~G~hg~~~~vp~~S~~~--------p~~~-~~~~~~--~~i~~~v~~~~~~i~~~  262 (270)
                      |..|...++|.++|+..++| +..+||+|.. |++|++-+++        |..+ +.++.|  .++.+.|+++|..|++.
T Consensus       159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a  237 (332)
T KOG1496|consen  159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA  237 (332)
T ss_pred             chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence            99999999999999999999 8999999976 8999999996        3333 445556  57999999999999998


Q ss_pred             cCCCC
Q 024248          263 IRGNW  267 (270)
Q Consensus       263 k~~~~  267 (270)
                      ++-++
T Consensus       238 rk~SS  242 (332)
T KOG1496|consen  238 RKLSS  242 (332)
T ss_pred             hhhhh
Confidence            76554

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.92  E-value=4.6e-24  Score=202.61  Aligned_cols=171  Identities=24%  Similarity=0.309  Sum_probs=131.4

Q ss_pred             CeEEEEcCCCchHHHHHH----HHHhCC--C-ccEEEEEeCCCChh-H----HHHhhccccCcceeeeeccCCHHHHhCC
Q 024248           47 FKVAVLGAAGGIGQPLAM----LMKINP--L-VSVLHLYDVVNTPG-V----TADISHMDTNAVVRGFLGQQQLEDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~----~l~~~g--~-~~eV~LvD~~~~~~-~----~~dl~~~~~~~~~~~i~~t~d~~~al~~  114 (270)
                      |||+|||| |.   +...    .|+...  + .+||+|+|++++.- .    +..+.+. ....++ +..|+|.++|++|
T Consensus         1 ~KI~iIGg-GS---~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~-~g~~~~-v~~ttD~~~Al~g   74 (425)
T cd05197           1 VKIAIIGG-GS---SFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEE-VGADIK-FEKTMDLEDAIID   74 (425)
T ss_pred             CEEEEECC-ch---HhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHh-hCCCeE-EEEeCCHHHHhCC
Confidence            79999999 54   3443    333322  2 36999999997421 1    1222222 122333 4678899999999


Q ss_pred             CCEEEEcCCCCC------------CCC---C-----chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHH
Q 024248          115 MDIVIIPAGVPR------------KPG---M-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA  174 (270)
Q Consensus       115 ADvVIi~ag~~~------------~~g---~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t  174 (270)
                      |||||.+..++.            +.|   +     .......+|+++++++++.|+++||++|+|++|||++    ++|
T Consensus        75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~d----i~t  150 (425)
T cd05197          75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAG----EVT  150 (425)
T ss_pred             CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHH----HHH
Confidence            999999865432            111   1     1344567999999999999999999999999999999    788


Q ss_pred             HHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc-cCCCCceeecccccc
Q 024248          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAGVTILPLLSQVK  235 (270)
Q Consensus       175 ~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G-~hg~~~~vp~~S~~~  235 (270)
                      +++++.  +|+.|+||+|.. +.|+++.+|+.+|+++++|+++|+| |||     |+||+++
T Consensus       151 ~a~~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~  204 (425)
T cd05197         151 EAVRRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVR  204 (425)
T ss_pred             HHHHHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEE
Confidence            888887  488999999877 8999999999999999999999999 997     7899885

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK15076 alpha-galactosidase; Provisional

Probab=99.91  E-value=1.1e-23  Score=200.42  Aligned_cols=165  Identities=21%  Similarity=0.296  Sum_probs=129.0

Q ss_pred             CeEEEEcCCCchHHHHHH--HHH-hCCCcc-EEEEEeCCCChhH-HHH-hhcccc--CcceeeeeccCCHHHHhCCCCEE
Q 024248           47 FKVAVLGAAGGIGQPLAM--LMK-INPLVS-VLHLYDVVNTPGV-TAD-ISHMDT--NAVVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~--~l~-~~g~~~-eV~LvD~~~~~~~-~~d-l~~~~~--~~~~~~i~~t~d~~~al~~ADvV  118 (270)
                      +||+|||| |.+|.+.++  .++ ..++.. ||+|+|+++.... ... +.+...  .... .+..|+|++++++|||+|
T Consensus         2 ~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~-~i~~ttD~~eal~dADfV   79 (431)
T PRK15076          2 PKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASA-KITATTDRREALQGADYV   79 (431)
T ss_pred             cEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCe-EEEEECCHHHHhCCCCEE
Confidence            69999998 999988776  454 345544 9999999874222 111 222211  1222 245678988999999999


Q ss_pred             EEcCCCC-CCCC--------------Cchhhh--------HHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHH
Q 024248          119 IIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (270)
Q Consensus       119 Ii~ag~~-~~~g--------------~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~  175 (270)
                      |++++.+ .+++              ++|.+.        +.+|+++++++++.|+++||++|+|++|||++    ++|+
T Consensus        80 v~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d----ivt~  155 (431)
T PRK15076         80 INAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA----MNTW  155 (431)
T ss_pred             eEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH----HHHH
Confidence            9999886 3334              344455        89999999999999999999999999999999    7888


Q ss_pred             HHHHhCCCCCCCeeeec--hhhHHHHHHHHHHHhCCCCCccceEEEc-cCC
Q 024248          176 VFKKVGTYDPKRLLGVT--MLDVVRANTFVAEVLGLDPREVDVPVVG-GHA  223 (270)
Q Consensus       176 ~~~~~sg~p~~kviG~t--~ldt~r~~~~lA~~l~v~~~~v~~~V~G-~hg  223 (270)
                      +++   ++|+.||||+|  .+++.   +.+|+.+|+++++|++++.| ||-
T Consensus       156 ~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~  200 (431)
T PRK15076        156 AMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHM  200 (431)
T ss_pred             HHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecch
Confidence            876   68889999996  56764   88999999999999999999 884

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.89  E-value=9.7e-23  Score=193.26  Aligned_cols=166  Identities=21%  Similarity=0.308  Sum_probs=127.1

Q ss_pred             CeEEEEcCCCchHHH-HHHHHHhC--CC-ccEEEEEeCC-CChh-----HHHHhhccccCcceeeeeccCCHHHHhCCCC
Q 024248           47 FKVAVLGAAGGIGQP-LAMLMKIN--PL-VSVLHLYDVV-NTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~-la~~l~~~--g~-~~eV~LvD~~-~~~~-----~~~dl~~~~~~~~~~~i~~t~d~~~al~~AD  116 (270)
                      |||+|||| |.+-.. +...|+..  .+ .+||+|+|++ +.+-     .+..+... ....++ +..|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~-~~~~~~-v~~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKK-AGLPIK-VHLTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHh-hCCCeE-EEEeCCHHHHhCCCC
Confidence            79999999 654322 22333332  22 4799999999 4321     11222222 122333 466889999999999


Q ss_pred             EEEEcCCCCCCCCCchhh--------------------hHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHH
Q 024248          117 IVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       117 vVIi~ag~~~~~g~~r~~--------------------~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~  176 (270)
                      +||++++++..++.++.+                    +..+|+++++++++.|+++||++|+|++|||++    ++|++
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a  153 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA  153 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence            999999877655443333                    367899999999999999999999999999999    78898


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc-cCC
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA  223 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G-~hg  223 (270)
                      +++.+   +.|+||+|..+ .|+++.+|+.+|+++++++++|+| ||-
T Consensus       154 ~~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~  197 (419)
T cd05296         154 VLRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHL  197 (419)
T ss_pred             HHHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccc
Confidence            88875   78999999774 799999999999999999999999 994

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.86  E-value=2.6e-21  Score=184.22  Aligned_cols=167  Identities=22%  Similarity=0.237  Sum_probs=129.3

Q ss_pred             CeEEEEcCCCchHHHHHH--HHHhC-CCc-cEEEEEeCCCCh--hHHHHhhcccc--CcceeeeeccCCHHHHhCCCCEE
Q 024248           47 FKVAVLGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVNTP--GVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~--~l~~~-g~~-~eV~LvD~~~~~--~~~~dl~~~~~--~~~~~~i~~t~d~~~al~~ADvV  118 (270)
                      +||+|||| |.+|.+.+.  .++.. .+. .+|+|+|++++.  ....++.+...  .... .+..++|++++++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~-~I~~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPL-KIEATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCe-EEEEeCCHHHHhcCCCEE
Confidence            58999998 999999776  34322 232 299999998742  22233332211  1112 245678999999999999


Q ss_pred             EEcCCCCCCCCCch----------------------hhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHH
Q 024248          119 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       119 Ii~ag~~~~~g~~r----------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~  176 (270)
                      |++++.+..++.++                      .....+|...+.++++.++++||+++++++|||++    ++|++
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~----i~t~~  154 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMA----ELTWA  154 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHH----HHHHH
Confidence            99997654443332                      34567899999999999999999999999999999    78999


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc-cCC
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA  223 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G-~hg  223 (270)
                      +++.++   .|++|+|.. +.++++.+|+.+|+++++|+++++| ||.
T Consensus       155 ~~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~  198 (423)
T cd05297         155 LNRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHM  198 (423)
T ss_pred             HHHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccH
Confidence            988765   799999865 6789999999999999999999999 884

linked to 3D####ucture

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.85  E-value=2.7e-20  Score=177.24  Aligned_cols=167  Identities=23%  Similarity=0.313  Sum_probs=123.7

Q ss_pred             CeEEEEcCCCchHH-HHHHHHHhC--CC-ccEEEEEeCCCChh-HH----HHhhccccCcceeeeeccCCHHHHhCCCCE
Q 024248           47 FKVAVLGAAGGIGQ-PLAMLMKIN--PL-VSVLHLYDVVNTPG-VT----ADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs-~la~~l~~~--g~-~~eV~LvD~~~~~~-~~----~dl~~~~~~~~~~~i~~t~d~~~al~~ADv  117 (270)
                      |||+|||| |..=+ .+..-|+..  .+ .++|+|+|+++..- .+    ..+.+. ....++ +..|+|.++|++||||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~-~g~~~~-v~~Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKE-NYPEIK-FVYTTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHh-hCCCeE-EEEECCHHHHhCCCCE
Confidence            79999999 54311 122233333  23 36999999997421 12    222222 122333 5678899999999999


Q ss_pred             EEEcCCCCC------------CCC--------CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHH
Q 024248          118 VIIPAGVPR------------KPG--------MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (270)
Q Consensus       118 VIi~ag~~~------------~~g--------~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~  177 (270)
                      ||.+..++.            +.|        .-......+|++++.++++.|+++||++|+|++|||++    ++|+++
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~----~vt~~~  153 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA----IVAEAL  153 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHH
Confidence            999865432            111        11234578999999999999999999999999999999    788888


Q ss_pred             HHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc-cCC
Q 024248          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA  223 (270)
Q Consensus       178 ~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G-~hg  223 (270)
                      ++.  +|+.|++|+|+-.. .++..+|+.+|++++++...+.| ||.
T Consensus       154 ~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~  197 (437)
T cd05298         154 RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHF  197 (437)
T ss_pred             HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecch
Confidence            876  78899999997664 47889999999999999999999 884

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.77  E-value=5.2e-18  Score=143.57  Aligned_cols=152  Identities=21%  Similarity=0.252  Sum_probs=103.5

Q ss_pred             eEEEEcCCCchHHHHH--HHHHh-CCC-ccEEEEEeCCCChh-----HHHHhhccccCcceeeeeccCCHHHHhCCCCEE
Q 024248           48 KVAVLGAAGGIGQPLA--MLMKI-NPL-VSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        48 KI~IIGa~G~VGs~la--~~l~~-~g~-~~eV~LvD~~~~~~-----~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvV  118 (270)
                      ||+|||| |.+-.+..  ..+.. ..+ .+||+|+|+++++-     .+..+... ....++ +..|+|+++|++|||+|
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~-~~~~~~-v~~ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEE-AGADLK-VEATTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHH-CTTSSE-EEEESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHh-cCCCeE-EEEeCCHHHHhCCCCEE
Confidence            8999998 76655532  22222 233 34999999997421     12222222 123333 45688999999999999


Q ss_pred             EEcCCCC------------CCCCCc----------hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHH
Q 024248          119 IIPAGVP------------RKPGMT----------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       119 Ii~ag~~------------~~~g~~----------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~  176 (270)
                      |.+..+.            .+.|..          ......++++.+.++++.++++||+||++|+|||+.    +++++
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a  153 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEA  153 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHH
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHH
Confidence            9987543            222211          234567999999999999999999999999999998    78888


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHhCC
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGL  209 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v  209 (270)
                      +.+.  +|..|++|+|+... -+...+|+.+|+
T Consensus       154 ~~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  154 LSRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             HHHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             HHHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence            8876  46689999997754 578889998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.1e-17  Score=157.14  Aligned_cols=169  Identities=25%  Similarity=0.371  Sum_probs=122.8

Q ss_pred             CCCeEEEEcCCCchHHHHHH--HHHh-CCC-ccEEEEEeCCCChhH-H----HHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAM--LMKI-NPL-VSVLHLYDVVNTPGV-T----ADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~--~l~~-~g~-~~eV~LvD~~~~~~~-~----~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      +++||+|||| |.++.....  .|.. ..+ ..||.|+|+++...+ .    ..+.+. ....++ +..|+|.++|++||
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~-~g~~~k-v~~ttd~~eAl~gA   78 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEE-AGAPVK-VEATTDRREALEGA   78 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHh-hCCCeE-EEEecCHHHHhcCC
Confidence            4679999998 766665321  2222 222 359999999874221 1    222222 123333 45688999999999


Q ss_pred             CEEEEcCCCCC------------CCC---C-----chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHH
Q 024248          116 DIVIIPAGVPR------------KPG---M-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (270)
Q Consensus       116 DvVIi~ag~~~------------~~g---~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~  175 (270)
                      |||+.++.++.            +.|   +     .......++++++.+|++.|+++||+||++++|||+.    ++|+
T Consensus        79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vTe  154 (442)
T COG1486          79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVTE  154 (442)
T ss_pred             CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHHH
Confidence            99999874432            111   1     1223456899999999999999999999999999998    7899


Q ss_pred             HHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCC-CccceEEEc-cCC
Q 024248          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVG-GHA  223 (270)
Q Consensus       176 ~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~-~~v~~~V~G-~hg  223 (270)
                      ++.+.  +|.-|++|+|+..- -....+|+.+|+++ .+++..+.| ||.
T Consensus       155 Av~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~  201 (442)
T COG1486         155 AVRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHM  201 (442)
T ss_pred             HHHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhh
Confidence            98875  46449999997653 47889999999985 999999999 883

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.61  E-value=1.1e-15  Score=129.00  Aligned_cols=74  Identities=36%  Similarity=0.623  Sum_probs=66.7

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CC-------CCCChhHHHHHHHHHHhhHHHHH
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PS-------CSLTPTEIDYLTDRIQNGGTEVV  260 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~-------~~~~~~~~~~i~~~v~~~~~~i~  260 (270)
                      |.||++||++++|+++|++|.+++++||||||+ ++||+||+++    |+       ..++++++++|.++|+++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            689999999999999999999999999999999 6899999997    43       23667788999999999999999


Q ss_pred             hhcCCC
Q 024248          261 EVIRGN  266 (270)
Q Consensus       261 ~~k~~~  266 (270)
                      ++|+|+
T Consensus        80 ~~k~g~   85 (174)
T PF02866_consen   80 KAKGGS   85 (174)
T ss_dssp             HHHSSS
T ss_pred             eecccc
Confidence            999654

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.27  E-value=1.3e-10  Score=108.05  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=82.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-------------HHHhhccccCcceeeeeccCCHHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------------TADISHMDTNAVVRGFLGQQQLEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-------------~~dl~~~~~~~~~~~i~~t~d~~~al~  113 (270)
                      |||+|+|. |+||...+.+|++.|+  +|+++|+++.+-.             ..+|.....  .-.++..|+|+++|++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~--~~gRl~fTtd~~~a~~   75 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENL--ASGRLRFTTDYEEAVK   75 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc--ccCcEEEEcCHHHHHh
Confidence            89999996 9999999999999999  9999999863211             122322211  1111456899999999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCC-CEEEEe-cCCCCCcH
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLI-SNPVNSTV  170 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-a~viv~-sNPv~~~~  170 (270)
                      ++|++||+.|+|.++..      ..++..+...++.+.+..+. +++++= |-|+.+.-
T Consensus        76 ~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~  128 (414)
T COG1004          76 DADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTE  128 (414)
T ss_pred             cCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchH
Confidence            99999999999987633      22467888889999888776 444443 56887643

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.12  E-value=1.3e-10  Score=98.65  Aligned_cols=120  Identities=25%  Similarity=0.395  Sum_probs=78.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-----hHHHH----hhcccc------CcceeeeeccCCHHHHh
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTAD----ISHMDT------NAVVRGFLGQQQLEDAL  112 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-----~~~~d----l~~~~~------~~~~~~i~~t~d~~~al  112 (270)
                      ||+|+|+ |.+|..+|..++..|+  +|+++|.++..     ....+    +.+...      ...+..+..++|++++.
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~   77 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV   77 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence            7999998 9999999999999999  99999998631     11111    111100      11223355678996655


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                       +||+||.+.              .++++..+++...+++.+ |++++  .||.+..   .++++.... . .++|++|+
T Consensus        78 -~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl---~i~~la~~~-~-~p~R~ig~  135 (180)
T PF02737_consen   78 -DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSL---SISELAAAL-S-RPERFIGM  135 (180)
T ss_dssp             -TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS----HHHHHTTS-S-TGGGEEEE
T ss_pred             -hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCC---CHHHHHhcc-C-cCceEEEE
Confidence             999999986              345788999999999998 56765  8887775   355554433 2 45677777


Q ss_pred             c
Q 024248          192 T  192 (270)
Q Consensus       192 t  192 (270)
                      .
T Consensus       136 H  136 (180)
T PF02737_consen  136 H  136 (180)
T ss_dssp             E
T ss_pred             e
Confidence            3

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.11  E-value=7.1e-10  Score=101.12  Aligned_cols=161  Identities=24%  Similarity=0.321  Sum_probs=108.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hhH--HH----Hhhcc------ccCcceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TA----DISHM------DTNAVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~--~~----dl~~~------~~~~~~~~i~~t~d~~~a  111 (270)
                      +||+|||| |.+|+.+|..++..|+  +|+++|++++   .+.  ..    .+...      .....+..+..++++ .+
T Consensus         4 ~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~~   79 (307)
T COG1250           4 KKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-AA   79 (307)
T ss_pred             cEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-hH
Confidence            59999998 9999999999999778  9999999853   111  11    11111      011223335556777 48


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      +++||+||.++              .+|+++.+++.+.+.+++ |++++  .||.+..   .++++....  ..|+|++|
T Consensus        80 l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl---~it~ia~~~--~rper~iG  138 (307)
T COG1250          80 LKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSL---SITELAEAL--KRPERFIG  138 (307)
T ss_pred             hccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCC---CHHHHHHHh--CCchhEEE
Confidence            99999999985              567899999999999998 67766  9999887   355555443  34567777


Q ss_pred             e-------------------chhhHHHHHHHHHHHhCCCCCcc-ce-EEEccCCCCceeecccccc
Q 024248          191 V-------------------TMLDVVRANTFVAEVLGLDPREV-DV-PVVGGHAGVTILPLLSQVK  235 (270)
Q Consensus       191 ~-------------------t~ldt~r~~~~lA~~l~v~~~~v-~~-~V~G~hg~~~~vp~~S~~~  235 (270)
                      +                   |.-++...-..+++.+|..|-.+ ++ -.++|+   -..|+|..+.
T Consensus       139 ~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGFi~NR---il~~~~~eA~  201 (307)
T COG1250         139 LHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGFIVNR---LLAALLNEAI  201 (307)
T ss_pred             EeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCceehHh---HHHHHHHHHH
Confidence            6                   33466667788889988544111 11 334454   2346666553

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.00  E-value=3.7e-09  Score=98.07  Aligned_cols=174  Identities=13%  Similarity=-0.002  Sum_probs=107.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhc-c--ccCcceee----eeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH-M--DTNAVVRG----FLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~-~--~~~~~~~~----i~~t~d~~~al~~A  115 (270)
                      +.|||.|+||+||+|++++..|+.+|+  +|+.+|+....  ....++.. .  .....+..    +....++++.++++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            346999999999999999999999998  99999985421  01111110 0  00011111    11112345668899


Q ss_pred             CEEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       116 DvVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      |+||++|+....+  ..+..++...|+....++++.+++.... .++++|.. +.....  .....+..-..+...+|.+
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~--~~~~~e~~~~~p~~~Y~~s  168 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHP--DLPKIEERIGRPLSPYAVT  168 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCC--CCCCCCCCCCCCCChhhHH
Confidence            9999998754321  1233456789999999999999886433 34444421 110000  0000011112234568888


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ++...++...+++..+++...++ +.|+|.+.
T Consensus       169 K~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~  200 (348)
T PRK15181        169 KYVNELYADVFARSYEFNAIGLRYFNVFGRRQ  200 (348)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence            88887887778888899888885 59999763

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.99  E-value=6.3e-09  Score=99.80  Aligned_cols=174  Identities=14%  Similarity=0.029  Sum_probs=107.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ++++|||.|+||+||||++++..|+.+|+  +|+.+|+.... ....+.+......+..+ ..+-++.++.++|+||++|
T Consensus       117 ~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~-~~~~~~~~~~~~~~~~~-~~Di~~~~~~~~D~ViHlA  192 (436)
T PLN02166        117 GRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTG-RKENLVHLFGNPRFELI-RHDVVEPILLEVDQIYHLA  192 (436)
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCc-cHhHhhhhccCCceEEE-ECccccccccCCCEEEECc
Confidence            56679999999999999999999999998  99999985321 00111110001112111 1222334578999999999


Q ss_pred             CCCC--CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcH--HHHHHHHHHh-CCCCCCCeeeechhhH
Q 024248          123 GVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKKV-GTYDPKRLLGVTMLDV  196 (270)
Q Consensus       123 g~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~--~i~t~~~~~~-sg~p~~kviG~t~ldt  196 (270)
                      +...  ....+..+++..|+....++++.+++..  ..+|++|.- +....  ...++-.+.. .-..+...+|.++...
T Consensus       193 a~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~a  270 (436)
T PLN02166        193 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA  270 (436)
T ss_pred             eeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHH
Confidence            7432  1112345678899999999999999865  356655431 11100  0011100000 0112344578888888


Q ss_pred             HHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          197 VRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       197 ~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      +++...+++..+++..-++ +.|+|.+
T Consensus       271 E~~~~~y~~~~~l~~~ilR~~~vYGp~  297 (436)
T PLN02166        271 ETLAMDYHRGAGVEVRIARIFNTYGPR  297 (436)
T ss_pred             HHHHHHHHHHhCCCeEEEEEccccCCC
Confidence            8888888888888877775 4789975

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.99  E-value=1.6e-09  Score=92.40  Aligned_cols=124  Identities=20%  Similarity=0.276  Sum_probs=72.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-------------HHHhhcccc-CcceeeeeccCCHHHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------------TADISHMDT-NAVVRGFLGQQQLEDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-------------~~dl~~~~~-~~~~~~i~~t~d~~~al  112 (270)
                      |||+|||. |+||..+|..|+..|+  +|+.+|+++..-.             ..++..... ..+   +..++|+++++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~---l~~t~~~~~ai   74 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGR---LRATTDIEEAI   74 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTS---EEEESEHHHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhcccccccc---chhhhhhhhhh
Confidence            89999997 9999999999999999  9999999863110             011111100 122   34577898999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEe-cCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ++||++|++.++|.+.+.+      -++..+.+.++.|.+.. ++.+|++= |=|....-.++..++.+.++
T Consensus        75 ~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~  140 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSG  140 (185)
T ss_dssp             HH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCC
T ss_pred             hccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcc
Confidence            9999999999988655321      23455566677776654 44554443 45666433345555565554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PLN02650 dihydroflavonol-4-reductase

Probab=98.93  E-value=1.6e-08  Score=93.64  Aligned_cols=178  Identities=16%  Similarity=0.051  Sum_probs=107.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhcc-ccCcceee----eeccCCHHHHhCCCCE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM-DTNAVVRG----FLGQQQLEDALTGMDI  117 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~-~~~~~~~~----i~~t~d~~~al~~ADv  117 (270)
                      +.+++|.|+||+||+|++++..|+..|+  +|++++++.... ...++... .....+..    +.....++++++++|+
T Consensus         3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~   80 (351)
T PLN02650          3 SQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG   80 (351)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence            4567999999999999999999999998  999888865321 11122110 00011111    2222346678889999


Q ss_pred             EEEcCCCCCCCCCc-hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCC----cHHHHHHHHH---Hh--CCCCCC
Q 024248          118 VIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNS----TVPIAAEVFK---KV--GTYDPK  186 (270)
Q Consensus       118 VIi~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~----~~~i~t~~~~---~~--sg~p~~  186 (270)
                      ||++|+.......+ ..+.+..|+....++++.+.+...-..|+++|.. +..    ..+...+-.+   ..  ...++.
T Consensus        81 ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  160 (351)
T PLN02650         81 VFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTG  160 (351)
T ss_pred             EEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcccccc
Confidence            99998753211112 2356788999999999999875422355555432 110    0000010000   00  000112


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ..+|.+++....+...+++.+|++...++ +.|+|+..
T Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~  198 (351)
T PLN02650        161 WMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI  198 (351)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence            35777888788888888888899887775 58999753

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=98.93  E-value=9.4e-09  Score=92.65  Aligned_cols=164  Identities=16%  Similarity=0.086  Sum_probs=111.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhcccc-CcceeeeeccCCHHHHh--CCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-NAVVRGFLGQQQLEDAL--TGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~-~~~~~~i~~t~d~~~al--~~ADvVIi~a  122 (270)
                      |+|.|+|++|+|||+.+..|++.|+  +|+.+|.... .....+-..... ...+   ....-+.+.+  ...|.||+.|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi---~D~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDL---LDRALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecc---ccHHHHHHHHHhcCCCEEEECc
Confidence            7999999999999999999999999  9999998642 111111100000 0011   1011122333  3789999998


Q ss_pred             CCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-----CCCCCcHHHHHHHHHHhCCCCCCCeeeechhh
Q 024248          123 GVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-----NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       123 g~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-----NPv~~~~~i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                      +...-.  -+..+.|+..|+-....+++.+.+.+.+-+|.-.|     +|...   -++    +..-..+...+|-|+|-
T Consensus        76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~---PI~----E~~~~~p~NPYG~sKlm  148 (329)
T COG1087          76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS---PIS----ETSPLAPINPYGRSKLM  148 (329)
T ss_pred             cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc---ccC----CCCCCCCCCcchhHHHH
Confidence            754311  12367899999999999999999998766554322     23221   122    22223466789999999


Q ss_pred             HHHHHHHHHHHhCCCCCcc-ceEEEccC
Q 024248          196 VVRANTFVAEVLGLDPREV-DVPVVGGH  222 (270)
Q Consensus       196 t~r~~~~lA~~l~v~~~~v-~~~V~G~h  222 (270)
                      .++..+.+++..+.+..-+ ++.+.|-|
T Consensus       149 ~E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         149 SEEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             HHHHHHHHHHhCCCcEEEEEecccccCC
Confidence            9999999999999888777 67888855

>PLN02427 UDP-apiose/xylose synthase

Probab=98.91  E-value=1.3e-08  Score=95.47  Aligned_cols=176  Identities=15%  Similarity=0.086  Sum_probs=103.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhH-HHHhhccccCcceee----eeccCCHHHHhCCCC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGV-TADISHMDTNAVVRG----FLGQQQLEDALTGMD  116 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~-~~dl~~~~~~~~~~~----i~~t~d~~~al~~AD  116 (270)
                      ..++|||.|+||+||+|++++..|+.+ ++  +|+++|+...... ............+..    +....+++++++++|
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            366789999999999999999999987 57  9999997643211 111100000011111    111234567788999


Q ss_pred             EEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCc---------HHHHH--H--HHHH-
Q 024248          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNST---------VPIAA--E--VFKK-  179 (270)
Q Consensus       117 vVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~---------~~i~t--~--~~~~-  179 (270)
                      +||++|+.....  .....+.+..|+....++++.+++..  ..++++|.. +...         .++-.  .  .... 
T Consensus        89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~  166 (386)
T PLN02427         89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKED  166 (386)
T ss_pred             EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEeeeeeeCCCcCCCCCccccccccccccccccc
Confidence            999999753211  11223456778888889999887754  355555531 1100         00000  0  0000 


Q ss_pred             hCC--C----CCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          180 VGT--Y----DPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       180 ~sg--~----p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .+-  +    .+...+|.++....++...+++..+++..-++ +.|+|.+
T Consensus       167 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  216 (386)
T PLN02427        167 ESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPR  216 (386)
T ss_pred             ccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCC
Confidence            000  0    01235777777777777777888898887775 5899975

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.90  E-value=1.9e-08  Score=92.76  Aligned_cols=145  Identities=17%  Similarity=0.179  Sum_probs=94.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-H-------HH-Hhhcccc--CcceeeeeccCCHHHHhCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-V-------TA-DISHMDT--NAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~-------~~-dl~~~~~--~~~~~~i~~t~d~~~al~~A  115 (270)
                      .||+|||+ |.+|+.+|..++..|+  +|+++|+++... .       .. .+.....  ......+..++++++++++|
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~a   84 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA   84 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCC
Confidence            48999998 9999999999999999  999999986311 0       01 1111100  01111234466898999999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee----
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV----  191 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~----  191 (270)
                      |+|+.++              .+|.++.+++...+.+.+|... |+.||.+...   ++++.... . .++|++|+    
T Consensus        85 DlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~---~s~la~~~-~-~p~R~~g~Hffn  144 (321)
T PRK07066         85 DFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGLL---PTDFYARA-T-HPERCVVGHPFN  144 (321)
T ss_pred             CEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCccC---HHHHHHhc-C-CcccEEEEecCC
Confidence            9999985              3457788889999999886433 4588888642   44443322 2 34556553    


Q ss_pred             ---------------chhhHHHHHHHHHHHhCCCCCcc
Q 024248          192 ---------------TMLDVVRANTFVAEVLGLDPREV  214 (270)
Q Consensus       192 ---------------t~ldt~r~~~~lA~~l~v~~~~v  214 (270)
                                     |.-++...-..+.+.+|..|-.+
T Consensus       145 P~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v  182 (321)
T PRK07066        145 PVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHV  182 (321)
T ss_pred             ccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEec
Confidence                           33444444455667788766444

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.90  E-value=2e-08  Score=94.19  Aligned_cols=175  Identities=14%  Similarity=0.093  Sum_probs=104.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ..+|||+|+|++||||++++..|...|+  +|+.+|+.... ...+..... ......+.....+.++++++|+||++|+
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa   94 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMSEDMFCH-EFHLVDLRVMENCLKVTKGVDHVFNLAA   94 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-ccccccccc-eEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence            4568999999999999999999999999  99999985321 000000000 0000001111234456789999999986


Q ss_pred             CCCCCC---CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHH--HHHHhC--CCCCCCeeeechhh
Q 024248          124 VPRKPG---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAE--VFKKVG--TYDPKRLLGVTMLD  195 (270)
Q Consensus       124 ~~~~~g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~--~~~~~s--g~p~~kviG~t~ld  195 (270)
                      .....+   ......+..|+....++++.+++...+ .++++|.. +.........  -+.+..  .+.+...+|.++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~~  173 (370)
T PLN02695         95 DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA  173 (370)
T ss_pred             ccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHHHHH
Confidence            431111   112234578999999999999876544 44445432 2110000000  000100  12344567778888


Q ss_pred             HHHHHHHHHHHhCCCCCccce-EEEccCC
Q 024248          196 VVRANTFVAEVLGLDPREVDV-PVVGGHA  223 (270)
Q Consensus       196 t~r~~~~lA~~l~v~~~~v~~-~V~G~hg  223 (270)
                      +.++...+++..|++...++. .++|.++
T Consensus       174 ~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        174 TEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            888777788888998877754 8999764

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.89  E-value=7.2e-08  Score=88.69  Aligned_cols=176  Identities=15%  Similarity=0.051  Sum_probs=106.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcceee----eeccCCHHHHhCCCCEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRG----FLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADvVI  119 (270)
                      +.+||.|+||+||+|++++..|+++|+  +|++++++... ....++........+..    +....++.++++++|+||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            356899999999999999999999998  89888776431 11111111000011111    112223566788999999


Q ss_pred             EcCCCCCCCCCc-hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCc------HHHHHHHHH-----HhCCCCCC
Q 024248          120 IPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNST------VPIAAEVFK-----KVGTYDPK  186 (270)
Q Consensus       120 i~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~------~~i~t~~~~-----~~sg~p~~  186 (270)
                      ++|+.......+ ..+++..|+.....+++.+.+......++++|.- +...      ...+.+-.+     .....++.
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~  165 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT  165 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence            999743211112 2345688999999999999876422345544432 1100      000111000     00012344


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      ..+|.++....++...+++.+|++...++ +.|+|++
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            55788888788888888888899887775 4899976

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.89  E-value=2.8e-08  Score=91.08  Aligned_cols=168  Identities=17%  Similarity=0.078  Sum_probs=107.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh----HHHHhhccccCcc--eeeeeccCCHHHHhCCCCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAV--VRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~----~~~dl~~~~~~~~--~~~i~~t~d~~~al~~ADvV  118 (270)
                      ..++|+|+||+||||++++..|+++|+  +|+.-=+++...    ...+|........  ...+...+.+.+|+++||.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgV   82 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGV   82 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEE
Confidence            457999999999999999999999999  888877776421    2334443221111  11233455688999999999


Q ss_pred             EEcCCCCCCCCC-chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe---------
Q 024248          119 IIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL---------  188 (270)
Q Consensus       119 Ii~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv---------  188 (270)
                      |++|....-... ...+++.-+++++.++++.+++.. ...=+|+|+....       +.......+++.+         
T Consensus        83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aA-------v~~~~~~~~~~~vvdE~~wsd~  154 (327)
T KOG1502|consen   83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAA-------VRYNGPNIGENSVVDEESWSDL  154 (327)
T ss_pred             EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHH-------hccCCcCCCCCcccccccCCcH
Confidence            999865422122 234678889999999999999876 4433445543321       1111000111111         


Q ss_pred             ---------eeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          189 ---------LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       189 ---------iG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                               +.+++.=+.+....+|++-+++...++ +.|+|.-
T Consensus       155 ~~~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~  198 (327)
T KOG1502|consen  155 DFCRCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPG  198 (327)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCC
Confidence                     333333356777888888888888776 4888853

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.87  E-value=1.3e-08  Score=92.09  Aligned_cols=107  Identities=19%  Similarity=0.279  Sum_probs=74.5

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEcCCCCCCC
Q 024248           50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKP  128 (270)
Q Consensus        50 ~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~ag~~~~~  128 (270)
                      .|+||+||+|++++..|+++|...+|..+|+........++...... .....+....+++++++++|+||++|+.....
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            48999999999999999999954599999987642221122211110 01111333456888999999999998754333


Q ss_pred             C-CchhhhHHhhHHHHHHHHHHHhHhCCC
Q 024248          129 G-MTRDDLFNINAGIVKTLCEGIAKCCPK  156 (270)
Q Consensus       129 g-~~r~~~~~~N~~i~~~i~~~i~~~~p~  156 (270)
                      + .....+...|+...+++++.+.+..-+
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk  109 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK  109 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3 345668899999999999999976433

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.85  E-value=3.3e-08  Score=99.38  Aligned_cols=169  Identities=13%  Similarity=0.015  Sum_probs=105.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCC-HHHHhCCCCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQ-LEDALTGMDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d-~~~al~~ADvV  118 (270)
                      +.|||.|+||+||+|++++..|+.. |+  +|+.+|+.....  .++...   ..+..    +....+ ++++++++|+|
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~--~~~~~~---~~~~~~~gDl~d~~~~l~~~l~~~D~V  386 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAI--SRFLGH---PRFHFVEGDISIHSEWIEYHIKKCDVV  386 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhh--hhhcCC---CceEEEeccccCcHHHHHHHhcCCCEE
Confidence            3468999999999999999999875 78  999999865311  111111   11111    111111 34578899999


Q ss_pred             EEcCCCCCC--CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcH--HHHHHHHHHhCCCC---CCCeee
Q 024248          119 IIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTV--PIAAEVFKKVGTYD---PKRLLG  190 (270)
Q Consensus       119 Ii~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~--~i~t~~~~~~sg~p---~~kviG  190 (270)
                      |++|+....  ......+++..|+....++++.++++.  ..++++|. .+....  ..+.+-.......|   +...+|
T Consensus       387 iHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg  464 (660)
T PRK08125        387 LPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYS  464 (660)
T ss_pred             EECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchH
Confidence            999875421  112344567889999999999999875  34554543 222100  00111000000001   224688


Q ss_pred             echhhHHHHHHHHHHHhCCCCCccce-EEEccC
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVDV-PVVGGH  222 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~h  222 (270)
                      .++..+.++...+++..|++...++. .|+|++
T Consensus       465 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        465 VSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence            88888888888888999998888864 789975

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.85  E-value=1.4e-09  Score=98.50  Aligned_cols=167  Identities=18%  Similarity=0.202  Sum_probs=99.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCccee--------eeeccCCHHHHhC--CCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVR--------GFLGQQQLEDALT--GMD  116 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~--------~i~~t~d~~~al~--~AD  116 (270)
                      |.|+||+|.+|+.++..|+..+. .+|+++|+++..  ....++........++        .+.....+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            68999999999999999998865 499999998632  2223442110111111        1111222456677  999


Q ss_pred             EEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechh
Q 024248          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (270)
Q Consensus       117 vVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~l  194 (270)
                      +||++|....-+  .....+.+..|+-..+++++...++..+.+|.+.|.-+                ..|..++|.|+.
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKA----------------v~PtnvmGatKr  143 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKA----------------VNPTNVMGATKR  143 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGC----------------SS--SHHHHHHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccc----------------CCCCcHHHHHHH
Confidence            999998753211  12345678999999999999999988777777766321                123455667655


Q ss_pred             hHHHHHHHHHHHh---CCCCCcc-ceEEEccCCCCceeeccccc
Q 024248          195 DVVRANTFVAEVL---GLDPREV-DVPVVGGHAGVTILPLLSQV  234 (270)
Q Consensus       195 dt~r~~~~lA~~l---~v~~~~v-~~~V~G~hg~~~~vp~~S~~  234 (270)
                      -+.++....+...   +.....| .+.|+|..|  +.+|+|-+-
T Consensus       144 laE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G--SVip~F~~Q  185 (293)
T PF02719_consen  144 LAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG--SVIPLFKKQ  185 (293)
T ss_dssp             HHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT--SCHHHHHHH
T ss_pred             HHHHHHHHHhhhCCCCCcEEEEEEecceecCCC--cHHHHHHHH
Confidence            5555555554444   2333445 469999987  488998743

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.84  E-value=3.8e-08  Score=88.63  Aligned_cols=169  Identities=18%  Similarity=0.111  Sum_probs=104.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCC-CEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM-DIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A-DvVIi~ag~~  125 (270)
                      |+|.|+|++||||++++..|++.|+  +|+.+|+......... .... .... .+.......+.++++ |.||++++..
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~-~~~~-d~~~~~~~~~~~~~~~d~vih~aa~~   75 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVE-FVVL-DLTDRDLVDELAKGVPDAVIHLAAQS   75 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccc-eeee-cccchHHHHHHHhcCCCEEEEccccC
Confidence            4699999999999999999999999  9999998653221111 0000 0000 001112344556677 9999998765


Q ss_pred             CCCCCch---hhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcH---HHHHHHHHHhCCCCCCCeeeechhhHHH
Q 024248          126 RKPGMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTV---PIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (270)
Q Consensus       126 ~~~g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~---~i~t~~~~~~sg~p~~kviG~t~ldt~r  198 (270)
                      ..++..+   .++...|+...+++++.+++ +.-..++..|. .+....   +.+++-.  ....|.. .+|.+++..++
T Consensus        76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~ss~~~~~~~~~~~~~~E~~--~~~~p~~-~Yg~sK~~~E~  151 (314)
T COG0451          76 SVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFASSVSVVYGDPPPLPIDEDL--GPPRPLN-PYGVSKLAAEQ  151 (314)
T ss_pred             chhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeCCCceECCCCCCCCccccc--CCCCCCC-HHHHHHHHHHH
Confidence            4333322   24788999999999999998 33334444332 111100   0111110  1112222 57888888888


Q ss_pred             HHHHHHHHhCCCCCccce-EEEccCCC
Q 024248          199 ANTFVAEVLGLDPREVDV-PVVGGHAG  224 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~-~V~G~hg~  224 (270)
                      .....++..+++...++. .|+|.+..
T Consensus       152 ~~~~~~~~~~~~~~ilR~~~vyGp~~~  178 (314)
T COG0451         152 LLRAYARLYGLPVVILRPFNVYGPGDK  178 (314)
T ss_pred             HHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence            888888888899888874 89997644

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.83  E-value=5.8e-08  Score=93.33  Aligned_cols=174  Identities=14%  Similarity=0.024  Sum_probs=104.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.+.|||.|+||+||||++++..|+++|+  +|+.+|+..... ...+.+......+..+. .+-.+.++.++|+||++|
T Consensus       116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~-~~~~~~~~~~~~~~~i~-~D~~~~~l~~~D~ViHlA  191 (442)
T PLN02206        116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGR-KENVMHHFSNPNFELIR-HDVVEPILLEVDQIYHLA  191 (442)
T ss_pred             ccCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccc-hhhhhhhccCCceEEEE-CCccChhhcCCCEEEEee
Confidence            35669999999999999999999999998  999998753210 01111000011122111 112334577899999999


Q ss_pred             CCCCC--CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcH--HHHHHHHHHh-CCCCCCCeeeechhhH
Q 024248          123 GVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKKV-GTYDPKRLLGVTMLDV  196 (270)
Q Consensus       123 g~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~--~i~t~~~~~~-sg~p~~kviG~t~ldt  196 (270)
                      +....  ...+..+++..|+....++++.+++..  ..+|++|.- +....  ....+-.+.. .-..+...++.++..+
T Consensus       192 a~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~a  269 (442)
T PLN02206        192 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTA  269 (442)
T ss_pred             eecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHH
Confidence            75321  112345677899999999999998764  356655532 11000  0001100000 0011134577777777


Q ss_pred             HHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          197 VRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       197 ~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .++...+.+..+++..-++ ..++|.+
T Consensus       270 E~~~~~y~~~~g~~~~ilR~~~vyGp~  296 (442)
T PLN02206        270 ETLTMDYHRGANVEVRIARIFNTYGPR  296 (442)
T ss_pred             HHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            7777777788888777765 3788865

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.81  E-value=1.5e-08  Score=102.52  Aligned_cols=143  Identities=20%  Similarity=0.245  Sum_probs=97.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hh--HHHHh----h-ccc-----cCcceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTADI----S-HMD-----TNAVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~--~~~dl----~-~~~-----~~~~~~~i~~t~d~~~a  111 (270)
                      .||+|||| |.+|..+|..++..|+  +|+|+|++++   .+  .+.+.    . ...     ....+..+..++|+ ++
T Consensus       314 ~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  389 (714)
T TIGR02437       314 KQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AG  389 (714)
T ss_pred             ceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HH
Confidence            48999998 9999999999999999  9999999863   11  11111    1 100     01112235567788 67


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      +++||+||.++              .+++++.+++...+.+.++ ++++  .||.+...   ++++.... . .|+|++|
T Consensus       390 ~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~---i~~ia~~~-~-~p~r~ig  448 (714)
T TIGR02437       390 FDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTIS---ISLLAKAL-K-RPENFCG  448 (714)
T ss_pred             hcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc-C-CcccEEE
Confidence            99999999985              4568899999999999985 6654  89988863   55554433 2 3567777


Q ss_pred             e-------------------chhhHHHHHHHHHHHhCCCCCcc
Q 024248          191 V-------------------TMLDVVRANTFVAEVLGLDPREV  214 (270)
Q Consensus       191 ~-------------------t~ldt~r~~~~lA~~l~v~~~~v  214 (270)
                      +                   |.-++......+++.+|..|--+
T Consensus       449 ~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v  491 (714)
T TIGR02437       449 MHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVV  491 (714)
T ss_pred             EecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            6                   22344444566667777766544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.81  E-value=5.4e-08  Score=89.51  Aligned_cols=168  Identities=17%  Similarity=0.177  Sum_probs=102.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .++|.|+||+|++|++++..|+..|...+|+++|++.....  ..++... ....+. .+....+++++++++|+||++|
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~-~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAP-CLRFFIGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCC-cEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence            46899999999999999999988762238999998653211  1111110 000000 1122224566788999999999


Q ss_pred             CCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHH
Q 024248          123 GVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (270)
Q Consensus       123 g~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~  200 (270)
                      |....+  ..+..+.+..|+.....+++.+.+.... .|+++|....               +.+...+|.++....++.
T Consensus        83 g~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~SS~~~---------------~~p~~~Y~~sK~~~E~l~  146 (324)
T TIGR03589        83 ALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALSTDKA---------------ANPINLYGATKLASDKLF  146 (324)
T ss_pred             ccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCC---------------CCCCCHHHHHHHHHHHHH
Confidence            864221  1233467889999999999999875433 4555553111               122344666666666655


Q ss_pred             HHHH---HHhCCCCCccc-eEEEccCCCCceeeccc
Q 024248          201 TFVA---EVLGLDPREVD-VPVVGGHAGVTILPLLS  232 (270)
Q Consensus       201 ~~lA---~~l~v~~~~v~-~~V~G~hg~~~~vp~~S  232 (270)
                      ..++   ...|++...++ +.|+|..+  .++|.+.
T Consensus       147 ~~~~~~~~~~gi~~~~lR~g~v~G~~~--~~i~~~~  180 (324)
T TIGR03589       147 VAANNISGSKGTRFSVVRYGNVVGSRG--SVVPFFK  180 (324)
T ss_pred             HHHHhhccccCcEEEEEeecceeCCCC--CcHHHHH
Confidence            4443   34577766664 58888754  2455544

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.81  E-value=1.5e-07  Score=87.05  Aligned_cols=174  Identities=14%  Similarity=0.035  Sum_probs=102.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HH-HhhccccCccee-eeeccCCHHHHhCC--CCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TA-DISHMDTNAVVR-GFLGQQQLEDALTG--MDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~-dl~~~~~~~~~~-~i~~t~d~~~al~~--ADvVIi  120 (270)
                      .|+|.|+||+|++|++++..|++.|+  +|+.+|++..... .. .+........+. .+....++.+.+++  .|+||+
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            46899999999999999999999998  9999998754211 11 111100000010 11112234455654  599999


Q ss_pred             cCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHH
Q 024248          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (270)
Q Consensus       121 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~  197 (270)
                      +++.+...  ..+....+..|+.....+++.+.+.+....++++|.. ++....- ..-+.+....++...+|.++....
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~-~~~~~e~~~~~p~~~Y~~sK~~~e  160 (349)
T TIGR02622        82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEW-VWGYRETDPLGGHDPYSSSKACAE  160 (349)
T ss_pred             CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCC-CCCCccCCCCCCCCcchhHHHHHH
Confidence            99753211  1123456788999999999998865423456655542 2110000 000011112234456788777777


Q ss_pred             HHHHHHHHHh-------CCCCCccc-eEEEccC
Q 024248          198 RANTFVAEVL-------GLDPREVD-VPVVGGH  222 (270)
Q Consensus       198 r~~~~lA~~l-------~v~~~~v~-~~V~G~h  222 (270)
                      ++...+++.+       +++...++ +.|+|+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       161 LVIASYRSSFFGVANFHGIKIASARAGNVIGGG  193 (349)
T ss_pred             HHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence            7777777765       66666664 5888864

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.81  E-value=4.4e-08  Score=99.26  Aligned_cols=143  Identities=19%  Similarity=0.302  Sum_probs=96.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEeCCCC---hh--HHHHhh----cc-c-----cCcceeeeeccCCHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT---PG--VTADIS----HM-D-----TNAVVRGFLGQQQLED  110 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~-~~g~~~eV~LvD~~~~---~~--~~~dl~----~~-~-----~~~~~~~i~~t~d~~~  110 (270)
                      .||+|||| |.+|..+|..++ ..|+  +|+++|.+.+   .+  ...+..    .. .     ....+..+..++|+ +
T Consensus       310 ~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  385 (708)
T PRK11154        310 NKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-R  385 (708)
T ss_pred             cEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-H
Confidence            58999998 999999999998 7899  9999999863   11  111111    10 0     01112335567788 6


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      ++++||+||.++              .+|+++.+++...+++++ |++++  .||.+...   ++++.... . .++|++
T Consensus       386 ~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~---i~~la~~~-~-~p~r~i  444 (708)
T PRK11154        386 GFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLP---IGQIAAAA-A-RPEQVI  444 (708)
T ss_pred             HhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHHhc-C-cccceE
Confidence            899999999985              456899999999999998 56655  89988863   45554433 2 345676


Q ss_pred             ee-------------------chhhHHHHHHHHHHHhCCCCCcc
Q 024248          190 GV-------------------TMLDVVRANTFVAEVLGLDPREV  214 (270)
Q Consensus       190 G~-------------------t~ldt~r~~~~lA~~l~v~~~~v  214 (270)
                      |+                   |.-++...-..+++.+|..|-.+
T Consensus       445 g~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v  488 (708)
T PRK11154        445 GLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVV  488 (708)
T ss_pred             EEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence            65                   23444444556667777765443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.80  E-value=3.5e-08  Score=89.46  Aligned_cols=103  Identities=22%  Similarity=0.352  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHH----Hhhc-----cccC------cceeeeeccCCHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA----DISH-----MDTN------AVVRGFLGQQQLED  110 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~----dl~~-----~~~~------~~~~~i~~t~d~~~  110 (270)
                      +||+|+|+ |.+|+.+|..++..|+  +|+++|+++... ...    .+.+     ....      .....+..++|+++
T Consensus         4 ~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~   80 (287)
T PRK08293          4 KNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE   80 (287)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence            48999998 9999999999999998  999999986311 111    1110     0000      00122345678988


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCC
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNS  168 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~  168 (270)
                      ++++||+||+++.              ++.+..+++++.+.++++ ++++  ++|.+..
T Consensus        81 a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~  123 (287)
T PRK08293         81 AVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTL  123 (287)
T ss_pred             HhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccC
Confidence            8999999999862              235666778888888775 4543  5666654

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.80  E-value=2e-08  Score=101.86  Aligned_cols=143  Identities=18%  Similarity=0.218  Sum_probs=97.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hh--HHH----Hhhcc-c-----cCcceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTA----DISHM-D-----TNAVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~--~~~----dl~~~-~-----~~~~~~~i~~t~d~~~a  111 (270)
                      .||+|||| |.+|..+|..++..|+  +|+|+|++++   .+  ...    .+... .     ....+..+..++|+ ++
T Consensus       314 ~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  389 (715)
T PRK11730        314 KQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AG  389 (715)
T ss_pred             ceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HH
Confidence            48999998 9999999999999999  9999999863   11  111    11110 0     01112235567788 67


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      +++||+||.++              .+++++.+++...+++++| ++++  .||.+...   ++++.... . .++|++|
T Consensus       390 ~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~---i~~la~~~-~-~p~r~~g  448 (715)
T PRK11730        390 FERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTIS---ISLLAKAL-K-RPENFCG  448 (715)
T ss_pred             hcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhc-C-CCccEEE
Confidence            99999999985              4568899999999999985 5544  89988863   55554433 2 3567777


Q ss_pred             e-------------------chhhHHHHHHHHHHHhCCCCCcc
Q 024248          191 V-------------------TMLDVVRANTFVAEVLGLDPREV  214 (270)
Q Consensus       191 ~-------------------t~ldt~r~~~~lA~~l~v~~~~v  214 (270)
                      +                   |.-++......+++.+|..|-.+
T Consensus       449 ~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v  491 (715)
T PRK11730        449 MHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVV  491 (715)
T ss_pred             EecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEe
Confidence            5                   23344444455667777766544

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.79  E-value=3e-08  Score=90.00  Aligned_cols=101  Identities=16%  Similarity=0.238  Sum_probs=71.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---h--HHHH----hhcccc------CcceeeeeccCCHHHHh
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---G--VTAD----ISHMDT------NAVVRGFLGQQQLEDAL  112 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~--~~~d----l~~~~~------~~~~~~i~~t~d~~~al  112 (270)
                      ||+|||+ |.+|..+|..++..|+  +|+++|+++..   +  ...+    +.+...      ...+..+..++|+ +++
T Consensus         7 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~   82 (286)
T PRK07819          7 RVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDF   82 (286)
T ss_pred             EEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHh
Confidence            8999998 9999999999999999  99999998631   1  1111    111100      0112234456788 679


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-C-CCEEEEecCCCCC
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-P-KAIVNLISNPVNS  168 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p-~a~viv~sNPv~~  168 (270)
                      ++||+||.++              .++.+..+++...+.+.+ + ++++  +||.+..
T Consensus        83 ~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~  124 (286)
T PRK07819         83 ADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSI  124 (286)
T ss_pred             CCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCC
Confidence            9999999985              345778888999999987 4 5554  7777665

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.79  E-value=9.9e-08  Score=86.76  Aligned_cols=170  Identities=17%  Similarity=0.086  Sum_probs=102.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccc-cCccee----eeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMD-TNAVVR----GFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~-~~~~~~----~i~~t~d~~~al~~ADvVI  119 (270)
                      .+||.|+||+||+|++++..|+.+|+  +|++++++.... ....+.... ....+.    .+.....++++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            36899999999999999999999999  999888865321 111121110 011111    1222335777889999999


Q ss_pred             EcCCCCCCCCCch-hhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCC---CCcH-----HHHHHHHHHhCCC-C----
Q 024248          120 IPAGVPRKPGMTR-DDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPV---NSTV-----PIAAEVFKKVGTY-D----  184 (270)
Q Consensus       120 i~ag~~~~~g~~r-~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv---~~~~-----~i~t~~~~~~sg~-p----  184 (270)
                      ++|+......... .+++..|+....++++.+.+. ... .++++|.-.   ....     ..+.+    .... |    
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~SS~~~~~y~~~~~~~~~~~~E----~~~~~p~~~~  156 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTSSMAAVAYNGKPLTPDVVVDE----TWFSDPAFCE  156 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEccCHHHhcCCCcCCCCCCcCCc----ccCCChhHhh
Confidence            9997542211122 356788999999999998875 333 455444211   0000     00110    0000 1    


Q ss_pred             -CCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          185 -PKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       185 -~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                       +.-.+|.++....++...+++..+++..-++ +.++|..
T Consensus       157 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~  196 (322)
T PLN02662        157 ESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPL  196 (322)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCC
Confidence             0124666777777777777788888877775 4788865

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.78  E-value=6e-08  Score=93.94  Aligned_cols=170  Identities=18%  Similarity=0.210  Sum_probs=112.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceee----eeccCCHHHHhCC--CCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG----FLGQQQLEDALTG--MDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~--ADv  117 (270)
                      ...|.|+||+|.+|+.++..++..+. ++++++|+++..  ....++........+..    +.....++.++++  .|+
T Consensus       250 gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~  328 (588)
T COG1086         250 GKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI  328 (588)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence            45899999999999999999988755 699999998732  12233443211122221    2222235668888  999


Q ss_pred             EEEcCCCCCCCCC--chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhh
Q 024248          118 VIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       118 VIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                      |+++|....-|-.  ...+-+..|+-..+++++++.++.-+.++++.|.-+                ..|-+++|.|+.-
T Consensus       329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKA----------------V~PtNvmGaTKr~  392 (588)
T COG1086         329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA----------------VNPTNVMGATKRL  392 (588)
T ss_pred             EEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcc----------------cCCchHhhHHHHH
Confidence            9999975443332  245667899999999999999888777777766211                1233456676655


Q ss_pred             HHHHHHHHHHHhC---CCCCcc-ceEEEccCCCCceeeccccc
Q 024248          196 VVRANTFVAEVLG---LDPREV-DVPVVGGHAGVTILPLLSQV  234 (270)
Q Consensus       196 t~r~~~~lA~~l~---v~~~~v-~~~V~G~hg~~~~vp~~S~~  234 (270)
                      +..+...+++..+   -.-..| ++.|+|..|  +.+|+|.+-
T Consensus       393 aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG--SViPlFk~Q  433 (588)
T COG1086         393 AEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG--SVIPLFKKQ  433 (588)
T ss_pred             HHHHHHHHhhccCCCCcEEEEEEecceecCCC--CCHHHHHHH
Confidence            5555555545333   222334 469999997  489998854

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.77  E-value=7.7e-08  Score=92.44  Aligned_cols=177  Identities=13%  Similarity=0.065  Sum_probs=105.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hh--------------H-HHHhhccccCcceee----
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--------------V-TADISHMDTNAVVRG----  101 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~--------------~-~~dl~~~~~~~~~~~----  101 (270)
                      .+.|||.|+||+||||++++..|+.+|+  +|+++|+...   ..              . ...+.+.. ...+..    
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~D  121 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGD  121 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECC
Confidence            3457899999999999999999999998  9999985321   00              0 00000000 001111    


Q ss_pred             eeccCCHHHHhC--CCCEEEEcCCCCCCC-C-Cc---hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCCcHH-H
Q 024248          102 FLGQQQLEDALT--GMDIVIIPAGVPRKP-G-MT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVP-I  172 (270)
Q Consensus       102 i~~t~d~~~al~--~ADvVIi~ag~~~~~-g-~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~~~~-i  172 (270)
                      +.....++++++  ++|+||++|+....+ . .+   ....+..|+....++++.+++.+....++.+| .-+..... -
T Consensus       122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~  201 (442)
T PLN02572        122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNID  201 (442)
T ss_pred             CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCC
Confidence            111223445565  489999998643211 0 11   12335689999999999999877654555443 21211000 0


Q ss_pred             HHHH-HH------HhC---CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          173 AAEV-FK------KVG---TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       173 ~t~~-~~------~~s---g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +.+- +.      ..+   -..+...+|.+++....+...+++.+|++...++ +.|+|.+.
T Consensus       202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~  263 (442)
T PLN02572        202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT  263 (442)
T ss_pred             CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence            0000 00      000   1123457899888888888889999999888885 58999763

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.77  E-value=1.7e-08  Score=102.52  Aligned_cols=143  Identities=18%  Similarity=0.217  Sum_probs=97.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hh--HHHHhhc-----cc-----cCcceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTADISH-----MD-----TNAVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~--~~~dl~~-----~~-----~~~~~~~i~~t~d~~~a  111 (270)
                      .||+|||| |.+|+.+|..++..|+  +|+|+|++++   .+  ...+..+     ..     ....+..+..++|+ ++
T Consensus       336 ~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  411 (737)
T TIGR02441       336 KTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SG  411 (737)
T ss_pred             cEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HH
Confidence            48999998 9999999999999999  9999999863   11  1111111     00     01112235567788 67


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      +++||+||.++              .+|+++.+++...++++++ ++++  .||.+...   ++++.... . .|+|++|
T Consensus       412 ~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~---i~~la~~~-~-~p~r~ig  470 (737)
T TIGR02441       412 FKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALP---IKDIAAVS-S-RPEKVIG  470 (737)
T ss_pred             hccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhc-C-CccceEE
Confidence            99999999985              4568999999999999985 5654  89988864   45444332 2 3567777


Q ss_pred             e-------------------chhhHHHHHHHHHHHhCCCCCcc
Q 024248          191 V-------------------TMLDVVRANTFVAEVLGLDPREV  214 (270)
Q Consensus       191 ~-------------------t~ldt~r~~~~lA~~l~v~~~~v  214 (270)
                      +                   |.-++......+++.+|..|--+
T Consensus       471 ~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v  513 (737)
T TIGR02441       471 MHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVV  513 (737)
T ss_pred             EeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence            5                   33444444566777777665433

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.74  E-value=3.3e-08  Score=99.97  Aligned_cols=143  Identities=17%  Similarity=0.272  Sum_probs=95.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEeCCCC---hh--HHHH-hh---c-cc-----cCcceeeeeccCCHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT---PG--VTAD-IS---H-MD-----TNAVVRGFLGQQQLED  110 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~-~~g~~~eV~LvD~~~~---~~--~~~d-l~---~-~~-----~~~~~~~i~~t~d~~~  110 (270)
                      .||+|||+ |.+|+.+|..++ ..|+  +|+++|.+++   .+  ...+ +.   . ..     ....+..+..++|+ +
T Consensus       305 ~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  380 (699)
T TIGR02440       305 KKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-R  380 (699)
T ss_pred             cEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-H
Confidence            48999998 999999999988 4799  9999999863   11  1111 11   0 00     00112335567788 6


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      ++++||+||.++              .+++++.+++...+.++++ ++++  .||.+...   ++++....  -.++|++
T Consensus       381 ~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~---i~~la~~~--~~p~r~~  439 (699)
T TIGR02440       381 GFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLP---IGQIAAAA--SRPENVI  439 (699)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCC---HHHHHHhc--CCcccEE
Confidence            799999999985              3468889999999999985 5544  89988863   45544433  2356676


Q ss_pred             ee-------------------chhhHHHHHHHHHHHhCCCCCcc
Q 024248          190 GV-------------------TMLDVVRANTFVAEVLGLDPREV  214 (270)
Q Consensus       190 G~-------------------t~ldt~r~~~~lA~~l~v~~~~v  214 (270)
                      |+                   |.-++......+.+.+|..|--+
T Consensus       440 g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v  483 (699)
T TIGR02440       440 GLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVV  483 (699)
T ss_pred             EEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            65                   33344444455667777766444

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.74  E-value=2.6e-07  Score=83.20  Aligned_cols=174  Identities=16%  Similarity=0.088  Sum_probs=101.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCccee-eeeccCCHHHHhCC--CCEEEEc
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVR-GFLGQQQLEDALTG--MDIVIIP  121 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~--ADvVIi~  121 (270)
                      ||.|+||+|++|.+++..|+..+...+|+++|+....   ....++........+. .+....++.+++++  +|+||++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~   80 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF   80 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence            5899999999999999999887632289999874311   1111221110000000 11122345566776  8999999


Q ss_pred             CCCCCC-C-CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHH
Q 024248          122 AGVPRK-P-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (270)
Q Consensus       122 ag~~~~-~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r  198 (270)
                      ++.... . ......++..|+.....+++.+.+...+..++.+|.. +.....-.. .+.+.....+...+|.++....+
T Consensus        81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~-~~~e~~~~~~~~~Y~~sK~~~e~  159 (317)
T TIGR01181        81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGD-AFTETTPLAPSSPYSASKAASDH  159 (317)
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCC-CcCCCCCCCCCCchHHHHHHHHH
Confidence            875321 1 1123456788999999999999876555556655531 110000000 00011122334457777777777


Q ss_pred             HHHHHHHHhCCCCCccce-EEEccC
Q 024248          199 ANTFVAEVLGLDPREVDV-PVVGGH  222 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~-~V~G~h  222 (270)
                      +...+++..+++..-++. .++|..
T Consensus       160 ~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       160 LVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             HHHHHHHHhCCCeEEEEeccccCCC
Confidence            777788888888777754 788864

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.74  E-value=2.6e-07  Score=85.41  Aligned_cols=164  Identities=13%  Similarity=0.087  Sum_probs=99.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHHHHhhccccCcceeeee-----ccCCHHHHhCCCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-----GQQQLEDALTGMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~-----~t~d~~~al~~ADvVIi  120 (270)
                      |||.|+||+||+|++++..|+.. ++  +|+++|+....  ..++...   ..+..+.     ....+.++++++|+||+
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH   74 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVILP   74 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence            58999999999999999999875 67  99999975321  1112111   1111111     01124456789999999


Q ss_pred             cCCCCCC--CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcH--HHHHHHHHHhCCC------CCCCee
Q 024248          121 PAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKKVGTY------DPKRLL  189 (270)
Q Consensus       121 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~--~i~t~~~~~~sg~------p~~kvi  189 (270)
                      +++....  ...+....+..|+....++++.+++..  ..++.+|.. +....  ..+.   .+.+-+      ++...+
T Consensus        75 ~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~~~~~~~~---ee~~~~~~~~~~~p~~~Y  149 (347)
T PRK11908         75 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCPDEEFD---PEASPLVYGPINKPRWIY  149 (347)
T ss_pred             CcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeccCCCcCcC---ccccccccCcCCCccchH
Confidence            9875321  122334456778899999999998753  455555532 11000  0000   000000      123357


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      |.++.........+++..+++..-++ +.++|.+
T Consensus       150 ~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~  183 (347)
T PRK11908        150 ACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG  183 (347)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence            77777777777777888898887775 5888964

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=98.72  E-value=2.8e-07  Score=85.04  Aligned_cols=171  Identities=12%  Similarity=-0.012  Sum_probs=98.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccc---cCcceee----eeccCCHHHHhCC--
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD---TNAVVRG----FLGQQQLEDALTG--  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~---~~~~~~~----i~~t~d~~~al~~--  114 (270)
                      +||.|+||+||+|++++..|+..|+  +|+++|+....   .....+....   ....+..    +.....+++++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999998  99999986431   1111111000   0011111    1112234556664  


Q ss_pred             CCEEEEcCCCCCCC-C-CchhhhHHhhHHHHHHHHHHHhHhCC-C-CEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          115 MDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCCP-K-AIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       115 ADvVIi~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~p-~-a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      +|+||++|+..... . ......+..|+....++++.+.+.+- . ..++++|. -+.....-.  ...+...+.+...+
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~--~~~E~~~~~p~~~Y  156 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI--PQNETTPFYPRSPY  156 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC--CCCCCCCCCCCChh
Confidence            59999999864321 1 11233456688888999999987652 2 24554442 111100000  00111123345567


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccc-eEEEcc
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGG  221 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~  221 (270)
                      |.++....++.+.+++.++++..... +.++|.
T Consensus       157 ~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp  189 (343)
T TIGR01472       157 AAAKLYAHWITVNYREAYGLFAVNGILFNHESP  189 (343)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceEEEeecccCCC
Confidence            88888888888888888887644322 234554

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=98.72  E-value=2.5e-07  Score=85.82  Aligned_cols=174  Identities=17%  Similarity=0.072  Sum_probs=102.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceee----eeccCCHHHHhCCCCE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRG----FLGQQQLEDALTGMDI  117 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADv  117 (270)
                      +..|||.|+||+|++|++++..|+++|+  +|++++++.....  ..++...   ..+..    +.....++++++++|+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~d~   82 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKEG---DRLRLFRADLQEEGSFDEAVKGCDG   82 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhccC---CeEEEEECCCCCHHHHHHHHcCCCE
Confidence            4467999999999999999999999998  9999887643211  1122111   11111    1111235567789999


Q ss_pred             EEEcCCCCCCC---C-Cchhh-----hHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcH-------HHHHHHHH--
Q 024248          118 VIIPAGVPRKP---G-MTRDD-----LFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTV-------PIAAEVFK--  178 (270)
Q Consensus       118 VIi~ag~~~~~---g-~~r~~-----~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~-------~i~t~~~~--  178 (270)
                      ||++|+.....   . .+..+     .+..|+....++++.+.+...-..|+++|. .+....       ..+.+-..  
T Consensus        83 Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p  162 (353)
T PLN02896         83 VFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTP  162 (353)
T ss_pred             EEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCc
Confidence            99999764211   1 11122     233445788889998877532234555543 221100       00111000  


Q ss_pred             -H--hCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          179 -K--VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       179 -~--~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                       .  ....++.-.+|.+++...++...+++..+++..-++ +.|+|.+
T Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  210 (353)
T PLN02896        163 IDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF  210 (353)
T ss_pred             HHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence             0  000112236888888888888889999998887775 5888975

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.71  E-value=3.1e-07  Score=88.94  Aligned_cols=119  Identities=14%  Similarity=0.181  Sum_probs=76.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccc-------cCc-----ceeeeeccCCHHHHhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-------TNA-----VVRGFLGQQQLEDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~-------~~~-----~~~~i~~t~d~~~al~~  114 (270)
                      |||+|+|+ |+||..+|..|+..|..-+|+++|+++.+  +..|....       ...     .-+.+..|+++++++++
T Consensus         2 m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          2 VKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence            79999997 99999999999988532289999998642  11111110       000     00114457788889999


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEe--cCCCCCc
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNST  169 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~  169 (270)
                      ||++|+|+++|...+....+ -..++..+.+.++.|.++.++..+++.  |-|..+.
T Consensus        79 advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt  134 (473)
T PLN02353         79 ADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA  134 (473)
T ss_pred             CCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH
Confidence            99999999998643210000 123456678888888887655434333  4677643

>PLN02214 cinnamoyl-CoA reductase

Probab=98.71  E-value=2.8e-07  Score=85.36  Aligned_cols=170  Identities=16%  Similarity=0.073  Sum_probs=105.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH---HHHhhccccCccee----eeeccCCHHHHhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVR----GFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~---~~dl~~~~~~~~~~----~i~~t~d~~~al~~ADvV  118 (270)
                      .++|.|+||+||+|++++..|+++|+  +|++++++.....   ...+...  ...+.    .+....+++++++++|+|
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            45899999999999999999999998  9999988643211   1122111  01111    122233567788999999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC--CCCcH-----HHHHHHHHHhCCC--CCCCee
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP--VNSTV-----PIAAEVFKKVGTY--DPKRLL  189 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP--v~~~~-----~i~t~~~~~~sg~--p~~kvi  189 (270)
                      |++|+...   ....+.+..|+.....+++.+.+.... .|+++|.-  +....     ..+++-.+....+  .+...+
T Consensus        86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y  161 (342)
T PLN02214         86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY  161 (342)
T ss_pred             EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence            99997542   233456788999999999999876533 44444431  11000     0011100000000  122346


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      |.++....++...+++..|++...++ +.|+|.+.
T Consensus       162 ~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~  196 (342)
T PLN02214        162 CYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPL  196 (342)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence            77777777888888888899887775 58999753

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=98.70  E-value=3.5e-07  Score=84.46  Aligned_cols=175  Identities=15%  Similarity=0.127  Sum_probs=102.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee----eeeccCCHHHHhC--CCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR----GFLGQQQLEDALT--GMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~----~i~~t~d~~~al~--~ADvVIi  120 (270)
                      |||.|+||+|++|++++..|+.+|. ..|+.+|+.........+........+.    .+....+++++++  ++|+||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            7999999999999999999998886 2466677643211111111100001111    1112223455565  4899999


Q ss_pred             cCCCCCC--CCCchhhhHHhhHHHHHHHHHHHhHhC-------CC-CEEEEecCC-CCCcHHHHH--------HHHHHhC
Q 024248          121 PAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNP-VNSTVPIAA--------EVFKKVG  181 (270)
Q Consensus       121 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~sNP-v~~~~~i~t--------~~~~~~s  181 (270)
                      +|+....  ......+++..|+.....+++.+.++.       .. ..++.+|.. +......--        ..+.+..
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~  159 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETT  159 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccC
Confidence            9976421  112235678899999999999998752       12 245545432 211000000        0001111


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .+.+...+|.++....++...+++.++++...++ ..|+|++
T Consensus       160 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~  201 (352)
T PRK10084        160 AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY  201 (352)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence            2334456888888888888888888998877775 4788976

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.69  E-value=4.6e-07  Score=83.76  Aligned_cols=172  Identities=15%  Similarity=0.092  Sum_probs=103.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee----eeeccCCHHHHhC--CCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR----GFLGQQQLEDALT--GMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~----~i~~t~d~~~al~--~ADvVIi  120 (270)
                      +||.|+||+||||++++..|..+|. ..++++|+.........+........+.    .+....+++++++  ++|+||+
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            4899999999999999999999886 2466777653211111111100000111    1111223555666  4899999


Q ss_pred             cCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhC-------CC-CEEEEecCC-CCCcH----HHHHHHHHHhCCCCC
Q 024248          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNP-VNSTV----PIAAEVFKKVGTYDP  185 (270)
Q Consensus       121 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~sNP-v~~~~----~i~t~~~~~~sg~p~  185 (270)
                      +||.....  .....+++..|+.....+++.+.++.       +. ..++.+|.. +....    ..++    +.....+
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~----E~~~~~p  156 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFT----ETTPYAP  156 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcC----CCCCCCC
Confidence            99864321  11234567889999999999998642       12 245555432 11100    0011    1111234


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ...+|.++....++...+++.++++..-++ +.|+|++.
T Consensus       157 ~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~  195 (355)
T PRK10217        157 SSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH  195 (355)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence            455788888888888888999998877775 58899763

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=98.69  E-value=2.5e-07  Score=83.87  Aligned_cols=167  Identities=16%  Similarity=0.097  Sum_probs=99.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||.|+|++|++|++++..|+.+|+  +|+++|++.....  ++.+.........+....+++++++++|+||++++...
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~   76 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRR--NLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYR   76 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCcccc--ccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecc
Confidence            6899999999999999999999998  9999998753211  11111000000011112246677889999999986532


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCC-CCc---HHHHHHHHHHhCCCCCC---CeeeechhhHHHH
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-NST---VPIAAEVFKKVGTYDPK---RLLGVTMLDVVRA  199 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv-~~~---~~i~t~~~~~~sg~p~~---kviG~t~ldt~r~  199 (270)
                      ....+..+....|+.....+++.+.+..-. .++++|... ...   -...+    +.....+.   ..++.++....++
T Consensus        77 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~----e~~~~~~~~~~~~Y~~sK~~~e~~  151 (328)
T TIGR03466        77 LWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSSVATLGVRGDGTPAD----ETTPSSLDDMIGHYKRSKFLAEQA  151 (328)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEechhhcCcCCCCCCcC----ccCCCCcccccChHHHHHHHHHHH
Confidence            222334566788999999999998876433 444444321 100   00000    00001111   1244466666677


Q ss_pred             HHHHHHHhCCCCCccc-eEEEccC
Q 024248          200 NTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      ...+++..+++..-++ +.++|.+
T Consensus       152 ~~~~~~~~~~~~~ilR~~~~~G~~  175 (328)
T TIGR03466       152 ALEMAAEKGLPVVIVNPSTPIGPR  175 (328)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCC
Confidence            7777777788776665 4777854

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.67  E-value=9e-07  Score=77.15  Aligned_cols=150  Identities=21%  Similarity=0.153  Sum_probs=86.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||++|.+|++++..|++.|+  +|.+++++++..  ...+..+........ .+.. ++.+++++++|+||+++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aDvVilavp   77 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRADVVILAVP   77 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCCEEEEECC
Confidence            7999998459999999999999997  999999875422  112221110000000 0111 244678999999999862


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCc-----------HHHHHHHHHHhCCCCC-CCeeee
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-----------VPIAAEVFKKVGTYDP-KRLLGV  191 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~-----------~~i~t~~~~~~sg~p~-~kviG~  191 (270)
                      .                ..+.++++.+.....+.++|-++||....           .-..++.+++.  +|. .+|+..
T Consensus        78 ~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~--~p~~~~VVka  139 (219)
T TIGR01915        78 W----------------DHVLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAAL--LPETSRVVAA  139 (219)
T ss_pred             H----------------HHHHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHh--CCCCCeEeec
Confidence            1                11233444444433446777788987631           00123555554  566 677766


Q ss_pred             -chhhHHHHHHHHHHHhCCCCCccceEEEccCC
Q 024248          192 -TMLDVVRANTFVAEVLGLDPREVDVPVVGGHA  223 (270)
Q Consensus       192 -t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg  223 (270)
                       ..+....+..      ...+.....++.|+..
T Consensus       140 ~~~~~a~~~~~------~~~~~~~~~~v~Gdd~  166 (219)
T TIGR01915       140 FHNLSAVLLQD------VDDEVDCDVLVCGDDE  166 (219)
T ss_pred             cccCCHHHhcC------CCCCCCCCEEEECCCH
Confidence             4444322221      1233445667888754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.67  E-value=1.6e-07  Score=84.84  Aligned_cols=103  Identities=21%  Similarity=0.344  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---H--H----HHhhcccc------CcceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---V--T----ADISHMDT------NAVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~--~----~dl~~~~~------~~~~~~i~~t~d~~~a  111 (270)
                      +||+|||+ |.+|..++..++..|+  +|+++|++++..   .  .    ..+.....      ...+..+..++|+ ++
T Consensus         4 ~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~   79 (282)
T PRK05808          4 QKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDL-DD   79 (282)
T ss_pred             cEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HH
Confidence            38999998 9999999999999998  999999986421   0  0    01111100      0011123346677 46


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCc
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNST  169 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~  169 (270)
                      +++||+||+++              .++....+++++.+.++++ ++++  +||.+...
T Consensus        80 ~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~  122 (282)
T PRK05808         80 LKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLS  122 (282)
T ss_pred             hccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence            89999999986              2235566788888888875 5544  67766653

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=98.66  E-value=5.3e-07  Score=82.35  Aligned_cols=175  Identities=16%  Similarity=0.057  Sum_probs=104.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhcc-ccCccee----eeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM-DTNAVVR----GFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~-~~~~~~~----~i~~t~d~~~al~~ADvVI  119 (270)
                      .++|.|+||+|++|++++..|+..|+  +|++++++.... ....+... .....+.    .+....+++++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            46899999999999999999999998  898887765321 11111110 0001111    1222334667788999999


Q ss_pred             EcCCCCCCC-C-CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHH-HH--HHHHHHhCCCC------CCC
Q 024248          120 IPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVP-IA--AEVFKKVGTYD------PKR  187 (270)
Q Consensus       120 i~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~-i~--t~~~~~~sg~p------~~k  187 (270)
                      ++||..... . ....+.+..|+.....+++.+.+......|+++|.- +..... ..  ...+.+..-..      +..
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~  162 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ  162 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence            999853211 1 122356688999999999998875322345555431 110000 00  00000110011      124


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .+|.+++...++...+++..|++...++ +.|+|..
T Consensus       163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~  198 (325)
T PLN02989        163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI  198 (325)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence            5788888888888888888898877775 5889965

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=98.65  E-value=5e-07  Score=83.20  Aligned_cols=174  Identities=13%  Similarity=-0.003  Sum_probs=98.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhcc--ccCcceee----eeccCCHHHHhCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHM--DTNAVVRG----FLGQQQLEDALTG  114 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~--~~~~~~~~----i~~t~d~~~al~~  114 (270)
                      .+.++|.|+||+|++|++++..|+.+|+  +|+++|+....   .....+...  .....+..    +....+++++++.
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   81 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD   81 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence            4457899999999999999999999998  99999886421   111111100  00011111    1112234455654


Q ss_pred             --CCEEEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCC----CEEEEecC-CCCCcHHHHHHHHHHhCCCCC
Q 024248          115 --MDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPK----AIVNLISN-PVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       115 --ADvVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~----a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~  185 (270)
                        .|+||++|+......  ......+..|+.....+++.+.+....    ..++++|. .+....   .....+...+.+
T Consensus        82 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~---~~~~~E~~~~~p  158 (340)
T PLN02653         82 IKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGST---PPPQSETTPFHP  158 (340)
T ss_pred             cCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCC---CCCCCCCCCCCC
Confidence              699999998642211  112334577888899999999877643    24444431 111100   000001111223


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCcc-ceEEEccC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH  222 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v-~~~V~G~h  222 (270)
                      ...+|.++.....+...+++.+++..... ...++|.+
T Consensus       159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~  196 (340)
T PLN02653        159 RSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPR  196 (340)
T ss_pred             CChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCC
Confidence            45678888777777778888887643322 23455543

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=98.64  E-value=1.2e-07  Score=86.18  Aligned_cols=156  Identities=17%  Similarity=0.098  Sum_probs=90.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi~ag~  124 (270)
                      |||.|+||+||+|++++..|..+|   +|+.+|+.... ...|+.+.            ..++++++  ++|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~-~~~Dl~d~------------~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHSTD-YCGDFSNP------------EGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEecccccc-ccCCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            799999999999999999998877   57888875321 11233221            13445565  58999999875


Q ss_pred             CCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcH--HHHHHHHHHhCCCCCCCeeeechhhHHHH
Q 024248          125 PRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTV--PIAAEVFKKVGTYDPKRLLGVTMLDVVRA  199 (270)
Q Consensus       125 ~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~--~i~t~~~~~~sg~p~~kviG~t~ldt~r~  199 (270)
                      .....  .........|+....++++.+++..  ..++.+|. -+....  ...+    +..-..|...+|.+++...++
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~Ss~~Vy~~~~~~p~~----E~~~~~P~~~Yg~sK~~~E~~  138 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYSTDYVFPGTGDIPWQ----ETDATAPLNVYGETKLAGEKA  138 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEccceEECCCCCCCcC----CCCCCCCCCHHHHHHHHHHHH
Confidence            42211  1223345689999999999998764  35555543 221000  0000    111122345577777766554


Q ss_pred             HHHHHHHhCCCCCccc-eEEEccCCCCceee
Q 024248          200 NTFVAEVLGLDPREVD-VPVVGGHAGVTILP  229 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~-~~V~G~hg~~~~vp  229 (270)
                      ...    +..+..-++ ++|+|..+. .+++
T Consensus       139 ~~~----~~~~~~ilR~~~vyGp~~~-~~~~  164 (299)
T PRK09987        139 LQE----HCAKHLIFRTSWVYAGKGN-NFAK  164 (299)
T ss_pred             HHH----hCCCEEEEecceecCCCCC-CHHH
Confidence            332    222323334 488887554 3444

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.64  E-value=2.5e-07  Score=84.70  Aligned_cols=108  Identities=13%  Similarity=0.064  Sum_probs=72.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      |||.|+||+|++|++++..|+++|+  +|+.++++.....  .+..... ..+. .+....+++++++++|+||++++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~--~l~~~~v-~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKAS--FLKEWGA-ELVYGDLSLPETLPPSFKGVTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhh--hHhhcCC-EEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence            7999999999999999999999998  9999998743211  1111100 0000 0112234678899999999987543


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ..   +..++...|.....++++.+++...+ .++.+|
T Consensus        76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         76 PS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            21   12234567888889999999886544 455554

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.63  E-value=1.8e-07  Score=91.20  Aligned_cols=144  Identities=22%  Similarity=0.311  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-----HH----Hhhcccc------CcceeeeeccCCHH
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TA----DISHMDT------NAVVRGFLGQQQLE  109 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-----~~----dl~~~~~------~~~~~~i~~t~d~~  109 (270)
                      +..||+|||+ |.+|+.+|..++..|+  +|+++|++++...     ..    .+.....      ...+..+..++++ 
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~-   79 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDL-   79 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCH-
Confidence            4458999998 9999999999999999  9999999864211     00    1111100      0112223456788 


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       110 ~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      +++++||+||.++              .++..+.+.++..+.+.++...+ ++||.+...   ++++.... . .+.|++
T Consensus        80 ~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~---i~~iA~~~-~-~p~r~~  139 (503)
T TIGR02279        80 HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLS---ITAIAAGL-A-RPERVA  139 (503)
T ss_pred             HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCC---HHHHHHhc-C-cccceE
Confidence            5688999999985              23466777888888888865433 478887764   33333222 1 233444


Q ss_pred             ee-------------------chhhHHHHHHHHHHHhCCCCC
Q 024248          190 GV-------------------TMLDVVRANTFVAEVLGLDPR  212 (270)
Q Consensus       190 G~-------------------t~ldt~r~~~~lA~~l~v~~~  212 (270)
                      |+                   |.-++......+.+.+|..|-
T Consensus       140 G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv  181 (503)
T TIGR02279       140 GLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPV  181 (503)
T ss_pred             EEeccCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeee
Confidence            43                   234454445666777776653

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.60  E-value=2.2e-07  Score=76.96  Aligned_cols=112  Identities=24%  Similarity=0.328  Sum_probs=69.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc----Cc--cee-eeeccCCHHHHhCCCCEEEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----NA--VVR-GFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~----~~--~~~-~i~~t~d~~~al~~ADvVIi  120 (270)
                      ||+|+|| |..|.++|..|+.+|+  +|.|+++++..  ..++.+...    .+  .+. .+..++|+++++++||+||+
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~--~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iii   75 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQ--IEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIII   75 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHH--HHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHH--HHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEe
Confidence            8999998 9999999999999998  99999997532  222222110    11  111 13457899999999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCC-CCcHHHHHHHHHHh
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPV-NSTVPIAAEVFKKV  180 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv-~~~~~i~t~~~~~~  180 (270)
                      +..                ....+++++.++.+-+ +..+++++--. ......+++++.+.
T Consensus        76 avP----------------s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~  121 (157)
T PF01210_consen   76 AVP----------------SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEI  121 (157)
T ss_dssp             -S-----------------GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHH
T ss_pred             ccc----------------HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHH
Confidence            862                1224678888887764 45565554222 11112455665554

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=98.60  E-value=1e-06  Score=79.85  Aligned_cols=166  Identities=10%  Similarity=0.094  Sum_probs=94.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC-HHHHh-----CCCCEEEEcC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ-LEDAL-----TGMDIVIIPA  122 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d-~~~al-----~~ADvVIi~a  122 (270)
                      |.|+||+||+|++++..|+..|+ ..+.++|..........+.+.+.    .......+ +++++     .++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI----ADYMDKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh----hhhhhHHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999999887 24666776532111111111110    00000011 22222     3699999998


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~  201 (270)
                      +.......+...++..|+....++++.+.+...  .++..|.. +....  -.....+.....+...+|.++..+.++..
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~--~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~  152 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGR--TDDFIEEREYEKPLNVYGYSKFLFDEYVR  152 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcC--CCCCCccCCCCCCCCHHHHHHHHHHHHHH
Confidence            754322223345678899999999999987643  45554432 11000  00000011112233457777777777777


Q ss_pred             HHHHHhCCCCCccc-eEEEccCC
Q 024248          202 FVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       202 ~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      .+++..+++...++ +.++|.+.
T Consensus       153 ~~~~~~~~~~~~lR~~~vyG~~~  175 (308)
T PRK11150        153 QILPEANSQICGFRYFNVYGPRE  175 (308)
T ss_pred             HHHHHcCCCEEEEeeeeecCCCC
Confidence            77777788777775 58999753

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=98.60  E-value=1.5e-06  Score=79.31  Aligned_cols=175  Identities=17%  Similarity=0.096  Sum_probs=101.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhcc-ccCcceee----eeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTNAVVRG----FLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~-~~~~~~~~----i~~t~d~~~al~~ADvVI  119 (270)
                      .++|.|+||+|++|++++..|+..|+  +|++..++... .....+... .....+..    +....+++++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            45899999999999999999999998  88876665432 111222111 00011111    122234667789999999


Q ss_pred             EcCCCCCCC-CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCC---cH-----HHHHHHHHHhCCC--CCCCe
Q 024248          120 IPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS---TV-----PIAAEVFKKVGTY--DPKRL  188 (270)
Q Consensus       120 i~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~---~~-----~i~t~~~~~~sg~--p~~kv  188 (270)
                      ++|+..... .....+++..|+....++++.+++...-..||++|.-...   ..     ..+++-.+....+  ++...
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~  162 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNW  162 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccc
Confidence            999753211 1122345678999999999998764211245544422110   00     0000000000000  01244


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      ++.++..+.++...+++..+++...++ +.|+|..
T Consensus       163 Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~  197 (322)
T PLN02986        163 YPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPL  197 (322)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCC
Confidence            677777777777778888888887775 4888863

>PLN02778 3,5-epimerase/4-reductase

Probab=98.59  E-value=3e-07  Score=83.72  Aligned_cols=143  Identities=19%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh--CCCCEEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVII  120 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al--~~ADvVIi  120 (270)
                      +..+|||.|+||+||+|++++..|..+|+  +|++...+.        .+..            .++.++  .++|+||+
T Consensus         6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~--------~~~~------------~v~~~l~~~~~D~ViH   63 (298)
T PLN02778          6 GSATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRL--------ENRA------------SLEADIDAVKPTHVFN   63 (298)
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCcc--------CCHH------------HHHHHHHhcCCCEEEE
Confidence            45678999999999999999999999998  887543221        1100            011222  27899999


Q ss_pred             cCCCCCCCC-----CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCc-H--H-----HHHHHHHHhCCCCCCC
Q 024248          121 PAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-V--P-----IAAEVFKKVGTYDPKR  187 (270)
Q Consensus       121 ~ag~~~~~g-----~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~-~--~-----i~t~~~~~~sg~p~~k  187 (270)
                      +|+....+.     ....+.+..|+....++++.+++.... ++++.|..+... .  +     .+++   +..-.++..
T Consensus        64 ~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~E---e~~p~~~~s  139 (298)
T PLN02778         64 AAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKE---EDTPNFTGS  139 (298)
T ss_pred             CCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCc---CCCCCCCCC
Confidence            998643221     234567889999999999999987543 333333222100 0  0     0010   111122335


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCC
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDP  211 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~  211 (270)
                      .+|.+++...++...+++.+++.+
T Consensus       140 ~Yg~sK~~~E~~~~~y~~~~~lr~  163 (298)
T PLN02778        140 FYSKTKAMVEELLKNYENVCTLRV  163 (298)
T ss_pred             chHHHHHHHHHHHHHhhccEEeee
Confidence            678888877777776666555544

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.59  E-value=3.1e-08  Score=85.90  Aligned_cols=145  Identities=18%  Similarity=0.289  Sum_probs=96.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---h---hHHHHhhcc------cc--------CcceeeeeccC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---P---GVTADISHM------DT--------NAVVRGFLGQQ  106 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~---~~~~dl~~~------~~--------~~~~~~i~~t~  106 (270)
                      ..|+|+|| |.+|+.+|...+..|+  .|.|+|.++.   +   +....+.+.      +.        ...+..+..++
T Consensus        12 ~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen   12 KNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             cceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            47999998 9999999999999999  9999999862   1   111111110      00        01122234467


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       107 d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      |.++++.+||+||.+              +.+|+++.+++++.+.+.|+...++ .||.+...   ++.++...  -.+.
T Consensus        89 nv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il-~tNTSSl~---lt~ia~~~--~~~s  148 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL-ATNTSSLS---LTDIASAT--QRPS  148 (298)
T ss_pred             CHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE-eeccccee---HHHHHhhc--cChh
Confidence            888999999998776              3789999999999999999754332 88988763   44443221  2455


Q ss_pred             Ceeee-------------------chhhHHHHHHHHHHHhCCCCCcc
Q 024248          187 RLLGV-------------------TMLDVVRANTFVAEVLGLDPREV  214 (270)
Q Consensus       187 kviG~-------------------t~ldt~r~~~~lA~~l~v~~~~v  214 (270)
                      |+.|+                   |.-+|..+...+++.+|--|-.+
T Consensus       149 rf~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKttVac  195 (298)
T KOG2304|consen  149 RFAGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTTVAC  195 (298)
T ss_pred             hhceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCceee
Confidence            66665                   23445555566677777665544

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.58  E-value=1.5e-06  Score=87.57  Aligned_cols=178  Identities=13%  Similarity=0.020  Sum_probs=103.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeec-cCC---HHHHh--CCCCE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL--TGMDI  117 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~-t~d---~~~al--~~ADv  117 (270)
                      .++|||.|+||+||||++++..|+.++..-+|+.+|+.........+........+..+.. -+|   +.+.+  .++|+
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~   83 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDT   83 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCE
Confidence            3467999999999999999999988732228999997431111111111000111111110 112   22223  68999


Q ss_pred             EEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcH---HHHHHHHHHhCCCCCCCeeee
Q 024248          118 VIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV---PIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       118 VIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~---~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ||++|+......  ....++...|+.....+++.+++...-..+|.+|.- +....   +...  ..+.....+...+|.
T Consensus        84 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~--~~E~~~~~p~~~Y~~  161 (668)
T PLN02260         84 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVG--NHEASQLLPTNPYSA  161 (668)
T ss_pred             EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccC--ccccCCCCCCCCcHH
Confidence            999998643211  123456788999999999999876533355555531 11000   0000  001111223456778


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +++...++...+++..+++..-++ +.|+|.+.
T Consensus       162 sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~  194 (668)
T PLN02260        162 TKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ  194 (668)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence            888888888888888888877776 58899764

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=98.57  E-value=2e-07  Score=80.40  Aligned_cols=168  Identities=16%  Similarity=0.121  Sum_probs=101.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCC--CEEEEcCCCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVPR  126 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A--DvVIi~ag~~~  126 (270)
                      |.|+||+|++|+.++..|+.+|.  +|+.+.+................... .+....++++.+++.  |+||++++...
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~-dl~~~~~~~~~~~~~~~d~vi~~a~~~~   77 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVEFVIG-DLTDKEQLEKLLEKANIDVVIHLAAFSS   77 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEEEEES-ETTSHHHHHHHHHHHTESEEEEEBSSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEEEEEe-eccccccccccccccCceEEEEeecccc
Confidence            78999999999999999999999  77766665432211111100000000 011122455666666  99999997642


Q ss_pred             C--CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHH
Q 024248          127 K--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (270)
Q Consensus       127 ~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~l  203 (270)
                      .  ......+++..|+...+++++.+.+... ..++++|.. +....  -...+.+...+.+...++.++....++...+
T Consensus        78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS~~~y~~~--~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~  154 (236)
T PF01370_consen   78 NPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSSASVYGDP--DGEPIDEDSPINPLSPYGASKRAAEELLRDY  154 (236)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGGTSS--SSSSBETTSGCCHSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            0  0123456778899999999999998876 455555431 11000  0000000000111223566777777888888


Q ss_pred             HHHhCCCCCccce-EEEccC
Q 024248          204 AEVLGLDPREVDV-PVVGGH  222 (270)
Q Consensus       204 A~~l~v~~~~v~~-~V~G~h  222 (270)
                      ++..+++...++. .|+|.+
T Consensus       155 ~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  155 AKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHTSEEEEEEESEEESTT
T ss_pred             cccccccccccccccccccc
Confidence            8888999988865 899987

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02583 cinnamoyl-CoA reductase

Probab=98.56  E-value=1.5e-06  Score=78.92  Aligned_cols=173  Identities=14%  Similarity=0.038  Sum_probs=100.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH----HHHhhccccCcceee----eeccCCHHHHhCCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV----TADISHMDTNAVVRG----FLGQQQLEDALTGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~----~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADv  117 (270)
                      .++|+|+||+|++|++++..|+.+|+  +|++++++.....    ..++...  ...+..    +....++.+++.++|.
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~   81 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSG   81 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCE
Confidence            34799999999999999999999999  9999887532111    1122110  011111    2222345678999999


Q ss_pred             EEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcH--------HHHHHHHHHhCCC--CCCC
Q 024248          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV--------PIAAEVFKKVGTY--DPKR  187 (270)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~--------~i~t~~~~~~sg~--p~~k  187 (270)
                      |+.+++..........+++..|+.....+++.+.+...-..||++|.-.....        ..+.+--+....+  ++..
T Consensus        82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  161 (297)
T PLN02583         82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKL  161 (297)
T ss_pred             EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhccc
Confidence            99876543221112345678999999999999987531234554442211000        0000000000000  0011


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .++.++....++...+++..|++...++ +.|+|..
T Consensus       162 ~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~  197 (297)
T PLN02583        162 WHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPS  197 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCC
Confidence            3666777777777777777788877775 4788865

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.55  E-value=5.1e-07  Score=81.93  Aligned_cols=102  Identities=14%  Similarity=0.221  Sum_probs=66.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHH--------hh---ccccC------cceeeeeccCCH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTAD--------IS---HMDTN------AVVRGFLGQQQL  108 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~d--------l~---~~~~~------~~~~~i~~t~d~  108 (270)
                      .||+|||+ |.+|..++..++..|+  +|+++|+++... ...+        +.   +....      .....+..++++
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~   80 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY   80 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence            38999998 9999999999999999  999999986321 1111        11   10000      001112345677


Q ss_pred             HHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCC
Q 024248          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNS  168 (270)
Q Consensus       109 ~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~  168 (270)
                       +++++||+||+++.              ++.+..+++++.+.+.++ ++++  +||....
T Consensus        81 -~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~  124 (291)
T PRK06035         81 -ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETII--ASNTSGI  124 (291)
T ss_pred             -HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EEcCCCC
Confidence             67899999999862              124556777778888775 5544  5666554

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.54  E-value=6.7e-07  Score=81.04  Aligned_cols=103  Identities=20%  Similarity=0.255  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-----HHHhhcc-----ccC-----cceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHM-----DTN-----AVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-----~~dl~~~-----~~~-----~~~~~i~~t~d~~~a  111 (270)
                      .||+|||+ |.+|..+|..|+..|+  +|+++|++++...     ..++...     ...     .....+..+++++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   78 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA   78 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence            38999998 9999999999999999  9999999863111     0111100     000     001113345688889


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCC
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNS  168 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~  168 (270)
                      +++||+||.+...              +....+.++..+.++++ ++++  ++|.+..
T Consensus        79 ~~~aD~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~il--~~~tSt~  120 (288)
T PRK09260         79 VADADLVIEAVPE--------------KLELKKAVFETADAHAPAECYI--ATNTSTM  120 (288)
T ss_pred             hcCCCEEEEeccC--------------CHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence            9999999998621              23444566666777764 5544  4454443

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.54  E-value=6.4e-07  Score=81.27  Aligned_cols=102  Identities=22%  Similarity=0.301  Sum_probs=64.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHH-----Hhh----ccccC-----cceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-----DIS----HMDTN-----AVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~-----dl~----~~~~~-----~~~~~i~~t~d~~~a  111 (270)
                      +||+|||+ |.+|..++..++..|+  +|+++|++++.. ...     .+.    .....     ..+..+..++++ ++
T Consensus         5 ~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   80 (292)
T PRK07530          5 KKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-ED   80 (292)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HH
Confidence            58999998 9999999999999999  999999986311 100     010    01000     001113345677 56


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCC
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~  168 (270)
                      +++||+||++...              +....+.+++.+.+.+ |++++  +||.+..
T Consensus        81 ~~~aD~Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~  122 (292)
T PRK07530         81 LADCDLVIEAATE--------------DETVKRKIFAQLCPVLKPEAIL--ATNTSSI  122 (292)
T ss_pred             hcCCCEEEEcCcC--------------CHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence            8999999998621              1234455666777766 45654  4566554

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.54  E-value=4e-07  Score=88.93  Aligned_cols=141  Identities=21%  Similarity=0.271  Sum_probs=87.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---h--HHHH----hhcccc------CcceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---G--VTAD----ISHMDT------NAVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~--~~~d----l~~~~~------~~~~~~i~~t~d~~~a  111 (270)
                      .||+|||+ |.+|..+|..++..|+  +|+++|++++.   +  ...+    +.....      ...+..+..++++ ++
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~-~~   83 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEAL-AD   83 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HH
Confidence            48999998 9999999999999999  99999998641   1  1111    111100      0111223446677 56


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      +++||+||.++              .++.++.+.+...+.+.+ |++++  +||.+.+.   ++++... .. .++|++|
T Consensus        84 ~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~---i~~la~~-~~-~p~r~~G  142 (507)
T PRK08268         84 LADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLS---ITAIAAA-LK-HPERVAG  142 (507)
T ss_pred             hCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhh-cC-CcccEEE
Confidence            88999999985              234666777878888887 45554  56766653   2333322 22 2455555


Q ss_pred             e-------------------chhhHHHHHHHHHHHhCCCCC
Q 024248          191 V-------------------TMLDVVRANTFVAEVLGLDPR  212 (270)
Q Consensus       191 ~-------------------t~ldt~r~~~~lA~~l~v~~~  212 (270)
                      +                   |.-++......+.+.+|..|-
T Consensus       143 ~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv  183 (507)
T PRK08268        143 LHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPV  183 (507)
T ss_pred             EeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence            4                   223444444566777776553

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=98.51  E-value=2.2e-06  Score=78.48  Aligned_cols=171  Identities=19%  Similarity=0.170  Sum_probs=93.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hh-HHHHhhcc-ccCcc-ee-eeeccCCHHHHhC--CCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VTADISHM-DTNAV-VR-GFLGQQQLEDALT--GMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~-~~~dl~~~-~~~~~-~~-~i~~t~d~~~al~--~ADvVI  119 (270)
                      |||.|+||+|++|++++..|+..|+  +|+++|+... .. ....+.+. ..... +. .+.....+.++++  ++|+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv   78 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI   78 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence            7999999999999999999999998  9999986532 11 11111111 00011 10 0111112344454  689999


Q ss_pred             EcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCC-CCCCeeeechhh
Q 024248          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTY-DPKRLLGVTMLD  195 (270)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~-p~~kviG~t~ld  195 (270)
                      ++++.....  .....+.+..|+.....+++.+++.... .++++|.- +.....- . .+.+.... .+.-.+|.++..
T Consensus        79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~yg~~~~-~-~~~E~~~~~~p~~~Y~~sK~~  155 (338)
T PRK10675         79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSSSATVYGDQPK-I-PYVESFPTGTPQSPYGKSKLM  155 (338)
T ss_pred             ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhhCCCCC-C-ccccccCCCCCCChhHHHHHH
Confidence            998754211  1123467788999999999998876433 45545431 1100000 0 00000001 122345666777


Q ss_pred             HHHHHHHHHHHh-CCCCCccc-eEEEccC
Q 024248          196 VVRANTFVAEVL-GLDPREVD-VPVVGGH  222 (270)
Q Consensus       196 t~r~~~~lA~~l-~v~~~~v~-~~V~G~h  222 (270)
                      ..++...+++.. +++..-++ +.++|.|
T Consensus       156 ~E~~~~~~~~~~~~~~~~ilR~~~v~g~~  184 (338)
T PRK10675        156 VEQILTDLQKAQPDWSIALLRYFNPVGAH  184 (338)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEeeeecCCC
Confidence            666666666543 55544444 3666655

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.51  E-value=2.9e-06  Score=80.75  Aligned_cols=122  Identities=25%  Similarity=0.297  Sum_probs=75.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccc----------eeeeeccCCHHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAV----------VRGFLGQQQLEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~----------~~~i~~t~d~~~al~  113 (270)
                      |||+|||. |++|..+|..|+..|+  +|+++|+++..  ..++.....   .+.          ...+..+++++++++
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence            69999997 9999999999999999  99999997542  122221100   000          001234567878899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec-CCCCCcHHHHHHHHHH
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS-NPVNSTVPIAAEVFKK  179 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s-NPv~~~~~i~t~~~~~  179 (270)
                      +||+||++.+.+.....      .-++..+.+.++.+.+.. ++.++++.| -|....-.+...++.+
T Consensus        76 ~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        76 DADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             hCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            99999999987754321      123455566666666554 455555554 4444332333344333

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.50  E-value=9.1e-07  Score=81.01  Aligned_cols=103  Identities=23%  Similarity=0.297  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HH--------Hhhcccc------CcceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TA--------DISHMDT------NAVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~--------dl~~~~~------~~~~~~i~~t~d~~~a  111 (270)
                      |||+|||+ |.+|+.++..|+..|+  +|+++|+++.... ..        .+.....      ......+..+++++++
T Consensus         3 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a   79 (308)
T PRK06129          3 GSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA   79 (308)
T ss_pred             cEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence            58999997 9999999999999999  9999999863111 00        1111110      0011112346688888


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      +++||+|+.+..              ++....+.++..+.+..++..++ .||...
T Consensus        80 ~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~  120 (308)
T PRK06129         80 VADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSA  120 (308)
T ss_pred             hCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCC
Confidence            999999999861              11334455666677666655444 465544

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.49  E-value=1.9e-06  Score=81.56  Aligned_cols=110  Identities=19%  Similarity=0.285  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc------------CcceeeeeccCCHHHHhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------NAVVRGFLGQQQLEDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~------------~~~~~~i~~t~d~~~al~~  114 (270)
                      |||+|||+ |+||..+|..++. |+  +|+++|+++.+  +..+.....            .... .+..+.+.++++++
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~-~l~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKI-HFNATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCC-cEEEecchhhhhcC
Confidence            79999997 9999999987775 88  99999998642  111111100            0011 13345567788899


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCC
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNS  168 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~  168 (270)
                      ||+||++.+.+......     .-++..+.++++.+.+..++.++++-| -|...
T Consensus        74 ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         74 ADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGF  123 (388)
T ss_pred             CCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCch
Confidence            99999998776322111     123455566666666544556555544 56654

>PLN02686 cinnamoyl-CoA reductase

Probab=98.47  E-value=4.4e-06  Score=78.28  Aligned_cols=177  Identities=14%  Similarity=0.100  Sum_probs=102.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhcc---c-cCcceee----eeccCCHHHHhC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM---D-TNAVVRG----FLGQQQLEDALT  113 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~---~-~~~~~~~----i~~t~d~~~al~  113 (270)
                      ..+.++|+|+||+||+|++++..|+.+|+  +|+++.++.... ...++...   . ....+..    +....++.++++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~  127 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD  127 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence            34457899999999999999999999998  998766653211 11122100   0 0001111    111223566788


Q ss_pred             CCCEEEEcCCCCCCCCC--chhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCC---CCCc------HHHHHHHHHH--
Q 024248          114 GMDIVIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNP---VNST------VPIAAEVFKK--  179 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNP---v~~~------~~i~t~~~~~--  179 (270)
                      ++|.||++++.....+.  ....+...|+....++++.+.+. ..+ .++++|..   +...      ..++.+-.+.  
T Consensus       128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~  206 (367)
T PLN02686        128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE  206 (367)
T ss_pred             hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence            99999998875322221  11244567899999999998875 233 34444432   1100      0001100000  


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      ..-.++...+|.+++...++...+++..|++...++ +.|+|+.
T Consensus       207 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~  250 (367)
T PLN02686        207 SFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG  250 (367)
T ss_pred             hhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence            000011224677888888888888888898887775 5899974

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.44  E-value=2.1e-06  Score=83.77  Aligned_cols=105  Identities=13%  Similarity=0.084  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH-HH--------hhc--cccCcceeeeeccCCHHHHhCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-AD--------ISH--MDTNAVVRGFLGQQQLEDALTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~-~d--------l~~--~~~~~~~~~i~~t~d~~~al~~  114 (270)
                      -|||+|||+ |.+|+.+|..|+..|+  +|+++|+++..... .+        +..  .........+..++++++++++
T Consensus         4 i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~   80 (495)
T PRK07531          4 IMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG   80 (495)
T ss_pred             cCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC
Confidence            369999998 9999999999999999  99999998642111 11        000  0000000112345688889999


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCC
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~  168 (270)
                      ||+||.++.              ++.++.+.+...+.+.+++.. ++.||.+..
T Consensus        81 aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi  119 (495)
T PRK07531         81 ADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA-LIGSSTSGF  119 (495)
T ss_pred             CCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence            999999851              224455666667777775443 346776665

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.42  E-value=1.9e-06  Score=78.34  Aligned_cols=102  Identities=25%  Similarity=0.317  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HH--------HHhhcccc------CcceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VT--------ADISHMDT------NAVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~--------~dl~~~~~------~~~~~~i~~t~d~~~a  111 (270)
                      .||+|||+ |.+|..+|..++..|+  +|+++|+++... ..        .++.....      ...+..+..++++ ++
T Consensus         5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~   80 (295)
T PLN02545          5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EE   80 (295)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HH
Confidence            48999998 9999999999999998  999999976321 10        11211100      0011112334566 67


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCC
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~  168 (270)
                      +++||+||.++              .++.+....+...+.+.. |+++|  +||.+..
T Consensus        81 ~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i  122 (295)
T PLN02545         81 LRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSI  122 (295)
T ss_pred             hCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCC
Confidence            89999999986              122445566667777766 45544  4666554

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.42  E-value=3.3e-06  Score=77.18  Aligned_cols=103  Identities=20%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HH-------HhhccccC--cceeeeeccCCHHHHhCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TA-------DISHMDTN--AVVRGFLGQQQLEDALTGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~-------dl~~~~~~--~~~~~i~~t~d~~~al~~AD  116 (270)
                      +||+|||+ |.+|+.++..|+..|+  +|+++|+++.... ..       +.......  .....+..++++++++++||
T Consensus         5 ~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD   81 (311)
T PRK06130          5 QNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGAD   81 (311)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCC
Confidence            48999998 9999999999999998  9999999763211 11       11000000  00111234567877899999


Q ss_pred             EEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCC
Q 024248          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNS  168 (270)
Q Consensus       117 vVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~  168 (270)
                      +||++...              ......+++..+...++ +++|  +||.+..
T Consensus        82 lVi~av~~--------------~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~  118 (311)
T PRK06130         82 LVIEAVPE--------------KLELKRDVFARLDGLCDPDTIF--ATNTSGL  118 (311)
T ss_pred             EEEEeccC--------------cHHHHHHHHHHHHHhCCCCcEE--EECCCCC
Confidence            99998621              12334556666666654 4443  4555554

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.41  E-value=6e-06  Score=79.09  Aligned_cols=124  Identities=15%  Similarity=0.159  Sum_probs=74.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Cc------ceeeeeccCCHHHHhC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NA------VVRGFLGQQQLEDALT  113 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~------~~~~i~~t~d~~~al~  113 (270)
                      ++++|||+|||. |+||..+|..|+. ++  +|+.||+++.+  +..|.....   .+      ....+..+++. ++++
T Consensus         3 ~~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~~--ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~-~~~~   75 (425)
T PRK15182          3 GIDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKKR--ILELKNGVDVNLETTEEELREARYLKFTSEI-EKIK   75 (425)
T ss_pred             CCCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHHH--HHHHHCcCCCCCCCCHHHHHhhCCeeEEeCH-HHHc
Confidence            456799999997 9999999999877 57  99999998642  223332211   00      00012345566 5789


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEe-cCCCCCcHHHHHHHHHH
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-sNPv~~~~~i~t~~~~~  179 (270)
                      +||++|++.++|.+...      ..++..+....+.+.++. ++.++|+- |-|....-.++...+.+
T Consensus        76 ~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~  137 (425)
T PRK15182         76 ECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILAR  137 (425)
T ss_pred             CCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHh
Confidence            99999999998854321      122444455555665554 44555554 45555432233344443

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.38  E-value=8.6e-06  Score=74.85  Aligned_cols=112  Identities=23%  Similarity=0.397  Sum_probs=74.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccC----cc--ee-eeeccCCHHHHhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTN----AV--VR-GFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~----~~--~~-~i~~t~d~~~al~~ADvV  118 (270)
                      .|||+|+|+ |.-|+++|..|+++++  +|+++.++++  .+.++.....+    +.  +. .+..++|+++++++||+|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i   75 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII   75 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence            379999998 9999999999999998  9999999754  22333322111    11  11 145688999999999999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecC---CCCCcHHHHHHHHHHh
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN---PVNSTVPIAAEVFKKV  180 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sN---Pv~~~~~i~t~~~~~~  180 (270)
                      |++.  |              ...++++++.+...- ++.+++.+|-   |...  ..+++++++.
T Consensus        76 v~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~--~l~seii~e~  123 (329)
T COG0240          76 VIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETG--RLLSEIIEEE  123 (329)
T ss_pred             EEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCc--chHHHHHHHH
Confidence            9986  2              233455555554332 4566666662   3222  3566666665

>PRK06194 hypothetical protein; Provisional

Probab=98.35  E-value=1e-05  Score=72.44  Aligned_cols=158  Identities=18%  Similarity=0.132  Sum_probs=91.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceee----eeccCCHHHHhC-------
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG----FLGQQQLEDALT-------  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~----i~~t~d~~~al~-------  113 (270)
                      ++|.|+||+|++|++++..|+.+|.  +|+++|++...  ....++...  ...+..    +....+++++++       
T Consensus         7 k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          7 KVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERFG   82 (287)
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999998  99999987532  112223221  111111    111112333333       


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHH----HhHhCCC-----CEEEEecCCCCCcHHHHHHHHH
Q 024248          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEG----IAKCCPK-----AIVNLISNPVNSTVPIAAEVFK  178 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~-----a~viv~sNPv~~~~~i~t~~~~  178 (270)
                      ..|+||+++|.....   ..+   ....+..|+.....+++.    +.+.+.+     +.++++|.....          
T Consensus        83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~----------  152 (287)
T PRK06194         83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL----------  152 (287)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc----------
Confidence            479999999875321   111   122355666655554444    5544332     456655532221          


Q ss_pred             HhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       179 ~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                        .+.|..-.++.++.....+.+.++..++.....+++.++.
T Consensus       153 --~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~  192 (287)
T PRK06194        153 --LAPPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC  192 (287)
T ss_pred             --cCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence              1233344567776666677788888887766666655544

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.34  E-value=3.1e-06  Score=70.70  Aligned_cols=93  Identities=27%  Similarity=0.298  Sum_probs=65.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeee----eccCCHHHHhCCCCEEEEcCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i----~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |+|+||+|++|..++..|+++++  +|+++-+++.+..  +  .    ..+..+    ...+++.++++++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~--~----~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D--S----PGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H--C----TTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c--c----cccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999998  9999998754222  1  1    111111    1122467889999999999976


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +.+           +.+.++.+++.+++.... .++++|
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceeee
Confidence            533           167778899998876533 455454

...

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.34  E-value=2.3e-06  Score=76.26  Aligned_cols=98  Identities=19%  Similarity=0.251  Sum_probs=67.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKP  128 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~~~  128 (270)
                      |.|+||+|++|++++..|+..|+  +|+.++++.......  ...    .+..+.. ....++++++|+||++++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANT--KWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcc--cce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999999998  999999976421110  000    0000111 23456789999999999865321


Q ss_pred             C-C---chhhhHHhhHHHHHHHHHHHhHhCC
Q 024248          129 G-M---TRDDLFNINAGIVKTLCEGIAKCCP  155 (270)
Q Consensus       129 g-~---~r~~~~~~N~~i~~~i~~~i~~~~p  155 (270)
                      + .   ...++...|+...+.+++.+++...
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  102 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQ  102 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence            1 1   1235667899999999999988754

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=98.30  E-value=5.2e-06  Score=70.18  Aligned_cols=105  Identities=17%  Similarity=0.197  Sum_probs=68.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH-HH--hhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-AD--ISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~-~d--l~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+||||+|.+|+.++..+..+|+  ||+.+-+++.+-.+ .+  +.+.+       +...+.+.+++.+-|+||.+.|
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~D-------ifd~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAARQGVTILQKD-------IFDLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccccccceeeccc-------ccChhhhHhhhcCCceEEEecc
Confidence            8999999999999999999999999  99999988642211 11  11221       2223345678999999999987


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      .+. ++..  .+.   .+....+.+.++. +-...+++++....
T Consensus        72 ~~~-~~~~--~~~---~k~~~~li~~l~~-agv~RllVVGGAGS  108 (211)
T COG2910          72 AGA-SDND--ELH---SKSIEALIEALKG-AGVPRLLVVGGAGS  108 (211)
T ss_pred             CCC-CChh--HHH---HHHHHHHHHHHhh-cCCeeEEEEcCccc
Confidence            653 2221  111   2234555555554 23567888876443

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=98.29  E-value=6e-06  Score=74.29  Aligned_cols=154  Identities=12%  Similarity=0.074  Sum_probs=91.9

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEEcCCCCCC
Q 024248           50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGVPRK  127 (270)
Q Consensus        50 ~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi~ag~~~~  127 (270)
                      .|+||+||||++++..|+..|+  +|+++....    ..|+.+.            .++++.++  ++|+||++|+....
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~   62 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGG   62 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeecc
Confidence            3899999999999999998887  666554321    1233322            13444444  57999999875321


Q ss_pred             ---CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCc--HHHHHHHHHHh-CCCCCCCeeeechhhHHHHH
Q 024248          128 ---PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNST--VPIAAEVFKKV-GTYDPKRLLGVTMLDVVRAN  200 (270)
Q Consensus       128 ---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~--~~i~t~~~~~~-sg~p~~kviG~t~ldt~r~~  200 (270)
                         ......+++..|.....++++.+++.... .+|++|. -+...  ...+.|-.... ..-|....+|.++....++.
T Consensus        63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~  141 (306)
T PLN02725         63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMC  141 (306)
T ss_pred             cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHHHHHH
Confidence               11234467788999999999999986543 3444432 11100  00011110000 10121224777776666666


Q ss_pred             HHHHHHhCCCCCccc-eEEEccC
Q 024248          201 TFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      ..+.+..+++...++ +.|+|.+
T Consensus       142 ~~~~~~~~~~~~~~R~~~vyG~~  164 (306)
T PLN02725        142 QAYRIQYGWDAISGMPTNLYGPH  164 (306)
T ss_pred             HHHHHHhCCCEEEEEecceeCCC
Confidence            677788888877775 4799975

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=98.29  E-value=4.1e-06  Score=74.89  Aligned_cols=95  Identities=22%  Similarity=0.294  Sum_probs=68.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCC--CEEEEcCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP  125 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A--DvVIi~ag~~  125 (270)
                      ||.|+||+|++|++++..|++.|+  +|+++++..     .|+.+.            .+++++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~~------------~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTDP------------EALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCCH------------HHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999999998  999998741     233222            2355666665  9999999764


Q ss_pred             CCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          126 RKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       126 ~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....  ......+..|+....++++.+.+...  .++++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3211  12345678899999999999887543  455554

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02240 UDP-glucose 4-epimerase

Probab=98.28  E-value=7.9e-06  Score=75.25  Aligned_cols=168  Identities=17%  Similarity=0.097  Sum_probs=92.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--h---HHHHhhccccCcceee----eeccCCHHHHhC--C
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G---VTADISHMDTNAVVRG----FLGQQQLEDALT--G  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~---~~~dl~~~~~~~~~~~----i~~t~d~~~al~--~  114 (270)
                      .+||+|+||+|++|++++..|++.|+  +|+++|+....  .   ...++... ....+..    +....+++++++  +
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGD-LGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcc-cCccceEEecCcCCHHHHHHHHHhCC
Confidence            45899999999999999999999998  99999874321  1   11111110 0011111    111123444444  6


Q ss_pred             CCEEEEcCCCCCC-CC-CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHH----HHHHHhCCCCCCCe
Q 024248          115 MDIVIIPAGVPRK-PG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA----EVFKKVGTYDPKRL  188 (270)
Q Consensus       115 ADvVIi~ag~~~~-~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t----~~~~~~sg~p~~kv  188 (270)
                      +|+||++++.... .. ......+..|+.....+++.+++.... .++++|.- .    +..    ..+.+...+.+...
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~-~----vyg~~~~~~~~E~~~~~~~~~  155 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSSSA-T----VYGQPEEVPCTEEFPLSATNP  155 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccH-H----HhCCCCCCCCCCCCCCCCCCH
Confidence            8999999875421 11 123456789999999999988765433 45545431 1    000    00001111222334


Q ss_pred             eeechhhHHHHHHHHHHH-hCCCCCccc-eEEEccC
Q 024248          189 LGVTMLDVVRANTFVAEV-LGLDPREVD-VPVVGGH  222 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~-l~v~~~~v~-~~V~G~h  222 (270)
                      +|.++....++...+++. .++....++ +.++|.|
T Consensus       156 Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~  191 (352)
T PLN02240        156 YGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAH  191 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCC
Confidence            666666666666656543 455444443 2455543

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.27  E-value=2.2e-05  Score=67.75  Aligned_cols=95  Identities=20%  Similarity=0.305  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |+++|+|+ |.+|+.++..+...|+  ||.+-.++........-..  ..+.+   ... ..++|.+.||+||.+.  | 
T Consensus         2 ~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~--l~~~i---~~~-~~~dA~~~aDVVvLAV--P-   69 (211)
T COG2085           2 MIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAA--LGPLI---TGG-SNEDAAALADVVVLAV--P-   69 (211)
T ss_pred             cEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHh--hcccc---ccC-ChHHHHhcCCEEEEec--c-
Confidence            68899996 9999999999999999  9988877654322211111  11221   222 4568999999999986  2 


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCC
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv  166 (270)
                                   .+.+.++++.++..-.+-++|=.|||.
T Consensus        70 -------------~~a~~~v~~~l~~~~~~KIvID~tnp~   96 (211)
T COG2085          70 -------------FEAIPDVLAELRDALGGKIVIDATNPI   96 (211)
T ss_pred             -------------HHHHHhHHHHHHHHhCCeEEEecCCCc
Confidence                         233345555665544467788889994

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.26  E-value=9.2e-06  Score=77.56  Aligned_cols=108  Identities=20%  Similarity=0.166  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccce----------eeeeccCCHHHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAVV----------RGFLGQQQLEDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~~----------~~i~~t~d~~~al  112 (270)
                      .|||+|||. |++|..+|..|++.|+  +|+.+|+++.....  +.....   .+.+          ..+..+++    +
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~----~   73 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRATTT----P   73 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceeeecc----c
Confidence            469999997 9999999999999998  99999998642221  211100   0000          00112222    3


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec-CCCCC
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS-NPVNS  168 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s-NPv~~  168 (270)
                      ++||+||++..++.+...      ..++..+.+.++.+.+.. ++.+||+-| .|..+
T Consensus        74 ~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt  125 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA  125 (415)
T ss_pred             ccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence            589999999988754321      123455566667776655 455655554 46554

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.26  E-value=9.9e-06  Score=73.18  Aligned_cols=174  Identities=17%  Similarity=0.158  Sum_probs=110.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceee-eeccCCHHHHhC--CCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~-i~~t~d~~~al~--~ADvVIi  120 (270)
                      |++.|+|++||||+++...+..+....+|+.+|.-.=.+   -..++.+...+..++. +.....+.+.++  ..|+|++
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            689999999999999998888776545789998753122   2233433211111211 111112334555  6899999


Q ss_pred             cCCCCC-CCC-CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEe-cCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHH
Q 024248          121 PAGVPR-KPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (270)
Q Consensus       121 ~ag~~~-~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~  197 (270)
                      .|.-.. +-. ....++++.|+-....++++++++...-.++-+ |.-|......--..+-+.+.+.|+-.+..++-.+.
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD  160 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD  160 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHH
Confidence            875331 101 124678999999999999999998765344444 44444311000002334556777888888777777


Q ss_pred             HHHHHHHHHhCCCCCccce-EEEc
Q 024248          198 RANTFVAEVLGLDPREVDV-PVVG  220 (270)
Q Consensus       198 r~~~~lA~~l~v~~~~v~~-~V~G  220 (270)
                      .+.+.+.+.+|++..-.++ .-+|
T Consensus       161 ~lVray~~TYglp~~ItrcSNNYG  184 (340)
T COG1088         161 LLVRAYVRTYGLPATITRCSNNYG  184 (340)
T ss_pred             HHHHHHHHHcCCceEEecCCCCcC
Confidence            7889999999998766665 6777

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.21  E-value=2e-05  Score=73.66  Aligned_cols=123  Identities=20%  Similarity=0.257  Sum_probs=78.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh------hHH------HH--hhccccCcceeeeeccCCHHHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GVT------AD--ISHMDTNAVVRGFLGQQQLEDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~------~~~------~d--l~~~~~~~~~~~i~~t~d~~~al  112 (270)
                      ++|+|+|- |+||..+|..++.+|.  +|+.+|+++..      |+.      .|  +........   +..|+|+ +.+
T Consensus        10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~---lraTtd~-~~l   82 (436)
T COG0677          10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGK---LRATTDP-EEL   82 (436)
T ss_pred             eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCC---ceEecCh-hhc
Confidence            79999998 9999999999999999  99999998631      110      01  111111122   3467888 457


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCC-EEEE-ecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA-IVNL-ISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~viv-~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      +.||+++||+.+|-+...      +-++..+.+.++.|.++-.++ .+++ .|-|..++-.++-.++...+|
T Consensus        83 ~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sg  148 (436)
T COG0677          83 KECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSG  148 (436)
T ss_pred             ccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCC
Confidence            899999999988765422      223455566677777665444 3333 466766544444444444344

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.21  E-value=7.1e-06  Score=61.72  Aligned_cols=94  Identities=17%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-ccEEEEE-eCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~-~~eV~Lv-D~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      ||+|||+ |.+|++++..|+..|. ..+|.++ +++++.  ..++.... ...   + .+.+..++++.||+||++.-. 
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~--~~~~~~~~-~~~---~-~~~~~~~~~~~advvilav~p-   71 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEK--AAELAKEY-GVQ---A-TADDNEEAAQEADVVILAVKP-   71 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHH--HHHHHHHC-TTE---E-ESEEHHHHHHHTSEEEE-S-G-
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHH--HHHHHHhh-ccc---c-ccCChHHhhccCCEEEEEECH-
Confidence            7999997 9999999999999881 1288866 886532  22232211 001   1 122567899999999999721 


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP  165 (270)
                                     ..+.++++.+....++..+|-++||
T Consensus        72 ---------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   72 ---------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             ---------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             ---------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence                           1124566666444577778777665

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.21  E-value=1.5e-05  Score=72.90  Aligned_cols=80  Identities=21%  Similarity=0.325  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ..+|||+|+|+ |.+|++++..|...|+  +|+++|+++.                      .++++++++||+||++..
T Consensus         2 ~~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp   56 (308)
T PRK14619          2 TQPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS   56 (308)
T ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC
Confidence            35689999997 9999999999999999  9999998642                      245567788888888752


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHh--CCCCEEEEecC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISN  164 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~sN  164 (270)
                      .                ..++++++.+..+  .++.+++..|+
T Consensus        57 ~----------------~~~~~v~~~l~~~~~~~~~ivi~~s~   83 (308)
T PRK14619         57 M----------------KGVRPVAEQVQALNLPPETIIVTATK   83 (308)
T ss_pred             h----------------HHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            1                1234445555432  35566666665

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=98.19  E-value=9.4e-06  Score=79.93  Aligned_cols=115  Identities=15%  Similarity=0.073  Sum_probs=73.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhc-----ccc--Ccceee----eeccCCHHHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISH-----MDT--NAVVRG----FLGQQQLEDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~-----~~~--~~~~~~----i~~t~d~~~al  112 (270)
                      ...|+|+||+|++|..++..|+..|+  +|++++++.....  ..++..     ...  ...+..    +....++++++
T Consensus        80 gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         80 EDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            34699999999999999999999998  9999998764221  111111     000  011111    11122455678


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .++|+||+++|.......+....+..|.....++++.+.+..-. .||++|
T Consensus       158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS  207 (576)
T PLN03209        158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT  207 (576)
T ss_pred             cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence            99999999998653211122234567888889999998876433 455554

>PRK07201 short chain dehydrogenase; Provisional

Probab=98.18  E-value=2.1e-05  Score=78.67  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHH--hCCCccEEEEEeCCCChhHHHHhhccccCcceee----eec------cCCHHHHhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMK--INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLG------QQQLEDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~--~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~------t~d~~~al~~  114 (270)
                      |||.|+||+||+|++++..|+  ..+.  +|++++++.......++........+..    +..      ..++ +.+++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence            699999999999999999998  4666  9999999653222222211000001111    100      0123 23489


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +|+||++|+.... ..+..++...|+....++++.+.+.... .++.+|
T Consensus        78 ~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~~S  124 (657)
T PRK07201         78 IDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAA-TFHHVS  124 (657)
T ss_pred             CCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCC-eEEEEe
Confidence            9999999985422 2233456688999999999999876433 344443

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.17  E-value=1.3e-05  Score=66.64  Aligned_cols=64  Identities=17%  Similarity=0.271  Sum_probs=47.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||++||. |.+|+.++..|+..|+  +|+.||++.+  ...++.+..       .....++++++++||+||.+.
T Consensus         2 ~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~~--~~~~~~~~g-------~~~~~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    2 MKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSPE--KAEALAEAG-------AEVADSPAEAAEQADVVILCV   65 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSHH--HHHHHHHTT-------EEEESSHHHHHHHBSEEEE-S
T ss_pred             CEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccchh--hhhhhHHhh-------hhhhhhhhhHhhcccceEeec
Confidence            59999997 9999999999999999  9999998743  233344321       122457889999999999985

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=98.16  E-value=6e-06  Score=74.12  Aligned_cols=173  Identities=16%  Similarity=0.094  Sum_probs=101.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...+||+|+||+|||||+++..|...|+  +|..+|.....-+ ..+.+...++..+.+. .+.....+..+|-|++.|.
T Consensus        25 ~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ftg~k-~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAa  100 (350)
T KOG1429|consen   25 SQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFTGRK-ENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAA  100 (350)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccccch-hhcchhccCcceeEEE-eechhHHHHHhhhhhhhcc
Confidence            4457999999999999999999999998  9999998653221 2233332333333211 2223456889999999886


Q ss_pred             CCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHH---HHHH-HhCCCCCCCeeeechhhH
Q 024248          124 VPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAA---EVFK-KVGTYDPKRLLGVTMLDV  196 (270)
Q Consensus       124 ~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t---~~~~-~~sg~p~~kviG~t~ldt  196 (270)
                      .....+  ....+.+..|.-.+...+..+++.+  +.++.+|. -++.. +...   +..| ...-..++-+++..+.-+
T Consensus       101 pasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aSTseVYgd-p~~hpq~e~ywg~vnpigpr~cydegKr~a  177 (350)
T KOG1429|consen  101 PASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLASTSEVYGD-PLVHPQVETYWGNVNPIGPRSCYDEGKRVA  177 (350)
T ss_pred             CCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEeecccccCC-cccCCCccccccccCcCCchhhhhHHHHHH
Confidence            443222  2334455667766677777766654  66666552 12211 0000   0000 000011222233345666


Q ss_pred             HHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          197 VRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       197 ~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      .++.+.+.+..|+.-.-.+ +..+|..+
T Consensus       178 E~L~~~y~k~~giE~rIaRifNtyGPrm  205 (350)
T KOG1429|consen  178 ETLCYAYHKQEGIEVRIARIFNTYGPRM  205 (350)
T ss_pred             HHHHHHhhcccCcEEEEEeeecccCCcc
Confidence            7888888888888765554 36677654

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.15  E-value=2.6e-05  Score=70.75  Aligned_cols=115  Identities=13%  Similarity=0.166  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccc-----cCcce-eeeeccCCHHHHhCCCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVV-RGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~-----~~~~~-~~i~~t~d~~~al~~ADvVIi  120 (270)
                      |||+|+|+ |.+|+.++..|+..|+  +|+++++ +....  .+.+..     ..... ......++.+++.+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKRAK--ALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHHHH--HHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            79999998 9999999999999998  9999998 43211  111110     00000 001123466565689999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      +....                .+.++++.+.... ++.+|+.+.|.++.     .+.+.+.  +|++++++
T Consensus        75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~-----~~~l~~~--~~~~~v~~  122 (305)
T PRK12921         75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQ-----LEQLEPY--FGRERVLG  122 (305)
T ss_pred             Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCCh-----HHHHHHh--CCcccEEE
Confidence            97322                1233445555433 56777778898763     2223332  56667663

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.14  E-value=2.6e-05  Score=78.56  Aligned_cols=140  Identities=16%  Similarity=0.103  Sum_probs=81.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh--CCCCEEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVII  120 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al--~~ADvVIi  120 (270)
                      +.+.|||.|+||+||+|++++..|..+|+  +|... .       .|+.+..            .+...+  .+.|+||+
T Consensus       377 ~~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih  434 (668)
T PLN02260        377 GKPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFN  434 (668)
T ss_pred             CCCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEE
Confidence            45679999999999999999999998887  76321 1       0111110            111222  27899999


Q ss_pred             cCCCCCCC--C---CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEe-cCCCCCcHH--HHH-H-HHHHh-CCCCCCCee
Q 024248          121 PAGVPRKP--G---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVP--IAA-E-VFKKV-GTYDPKRLL  189 (270)
Q Consensus       121 ~ag~~~~~--g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-sNPv~~~~~--i~t-~-~~~~~-sg~p~~kvi  189 (270)
                      +|+....+  +   .+..+.+..|+....++++.+++...  .++++ |.-+..-..  ... . -+.+. .-.|+...+
T Consensus       435 ~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~--~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~Y  512 (668)
T PLN02260        435 AAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL--LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSFY  512 (668)
T ss_pred             CCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC--eEEEEcccceecCCcccccccCCCCCcCCCCCCCCChh
Confidence            99754221  1   13455678999999999999998754  34444 332210000  000 0 00111 011233578


Q ss_pred             eechhhHHHHHHHHHHH
Q 024248          190 GVTMLDVVRANTFVAEV  206 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~  206 (270)
                      |.+++...++...+++.
T Consensus       513 g~sK~~~E~~~~~~~~~  529 (668)
T PLN02260        513 SKTKAMVEELLREYDNV  529 (668)
T ss_pred             hHHHHHHHHHHHhhhhh
Confidence            88888877776655443

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.13  E-value=4.7e-05  Score=68.88  Aligned_cols=100  Identities=19%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccce-eeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAVV-RGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~~-~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|+|+ |.+|+.++..|.+.|+  +|+++|++.....  .+.....   .... ..+..+++.++ ++++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            79999998 9999999999999998  9999998643211  1111000   0000 00122345544 48999999996


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNS  168 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~~  168 (270)
                      ....                +.++++.+... .++..|+...|..+.
T Consensus        75 k~~~----------------~~~~~~~l~~~l~~~~~iv~~~nG~~~  105 (304)
T PRK06522         75 KAYQ----------------LPAALPSLAPLLGPDTPVLFLQNGVGH  105 (304)
T ss_pred             cccc----------------HHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence            3220                23445555543 356778888898763

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.12  E-value=4.9e-05  Score=71.41  Aligned_cols=76  Identities=16%  Similarity=0.288  Sum_probs=53.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-----ccEEEEEeCCCC---hhHHHHhhcccc----Ccc--e-eeeeccCCHHH
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHMDT----NAV--V-RGFLGQQQLED  110 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~-----~~eV~LvD~~~~---~~~~~dl~~~~~----~~~--~-~~i~~t~d~~~  110 (270)
                      +|||+|+|+ |.-|+++|..|..++.     ..+|.++.+++.   .....++.+...    .+.  + ..+..++|+++
T Consensus        11 ~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         11 PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            479999998 9999999999998861     129999998864   123334442211    111  1 12445778888


Q ss_pred             HhCCCCEEEEcC
Q 024248          111 ALTGMDIVIIPA  122 (270)
Q Consensus       111 al~~ADvVIi~a  122 (270)
                      ++++||+||++.
T Consensus        90 av~~aDiIvlAV  101 (365)
T PTZ00345         90 AVEDADLLIFVI  101 (365)
T ss_pred             HHhcCCEEEEEc
Confidence            999999999986

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.12  E-value=3.9e-05  Score=70.17  Aligned_cols=100  Identities=19%  Similarity=0.315  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc----cc--Cccee-eeeccCCHHHHhCCCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT--NAVVR-GFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~----~~--~~~~~-~i~~t~d~~~al~~ADvVI  119 (270)
                      |||+|||+ |.+|+.++..|+..|+  +|.++|+++....  .+...    ..  ...+. .+..++++++++++||+||
T Consensus         2 mkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi   76 (325)
T PRK00094          2 MKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAA--EINADRENPRYLPGIKLPDNLRATTDLAEALADADLIL   76 (325)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEE
Confidence            69999998 9999999999999998  9999999753211  11111    00  00000 1223457777889999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      ++...                ..+.++++.+.... ++.+++.++|.++
T Consensus        77 ~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         77 VAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             EeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence            98631                12244445555543 5677777776544

>PRK12320 hypothetical protein; Provisional

Probab=98.12  E-value=1.2e-05  Score=81.15  Aligned_cols=100  Identities=13%  Similarity=0.072  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      |||.|+||+||+|++++..|+.+|+  +|+++|+....     ..+.. ...+. .+... .+.+++.++|+||++++..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~-ve~v~~Dl~d~-~l~~al~~~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPR-VDYVCASLRNP-VLQELAGEADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCC-ceEEEccCCCH-HHHHHhcCCCEEEEcCccC
Confidence            7999999999999999999999998  99999985421     01000 00000 01111 2456678999999998753


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .  ..    ....|+....++++.+++...  .++++|
T Consensus        72 ~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         72 T--SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             c--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence            1  11    124688889999999987653  455555

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=98.12  E-value=3.8e-05  Score=72.66  Aligned_cols=114  Identities=18%  Similarity=0.116  Sum_probs=70.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh----HHHHhhccccCcc-ee-eeeccCCHHHHhC----
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAV-VR-GFLGQQQLEDALT----  113 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~----~~~dl~~~~~~~~-~~-~i~~t~d~~~al~----  113 (270)
                      .+.|||.|+||+|++|++++..|+.+|+  +|++++++....    ...++........ +. .+....+++++++    
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            4457999999999999999999999998  999999875311    0111111000001 10 1111223555566    


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ++|+||++++.... +  ..+.+..|.....++++.+++..-. .++++|
T Consensus       136 ~~D~Vi~~aa~~~~-~--~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS  181 (390)
T PLN02657        136 PVDVVVSCLASRTG-G--VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS  181 (390)
T ss_pred             CCcEEEECCccCCC-C--CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            59999998875321 1  1234567888888999998876543 344444

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.09  E-value=4.4e-05  Score=70.02  Aligned_cols=121  Identities=17%  Similarity=0.252  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHH---HhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~---dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      +..|||+|+|+ |.||+.++..|+..|+  +|.+++++.......   .+........+.....+++. ++...+|+||+
T Consensus         3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil   78 (313)
T PRK06249          3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLV   78 (313)
T ss_pred             CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEE
Confidence            34689999998 9999999999999998  999999875211110   00000000011101122333 35678999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      +.-...                ..++++.+... .+++.++...|-.+.     .+.+.+.  +|+.++++.
T Consensus        79 avK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~-----~e~l~~~--~~~~~v~~g  127 (313)
T PRK06249         79 GLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGV-----EEQLREI--LPAEHLLGG  127 (313)
T ss_pred             EecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCc-----HHHHHHH--CCCCcEEEE
Confidence            963321                12333444433 367888878887762     2333333  677777644

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.08  E-value=6.2e-05  Score=70.15  Aligned_cols=72  Identities=21%  Similarity=0.336  Sum_probs=50.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC--------CccEEEEEeCCC---ChhHHHHhhc--ccc--Ccce--e-eeeccCCHH
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINP--------LVSVLHLYDVVN---TPGVTADISH--MDT--NAVV--R-GFLGQQQLE  109 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g--------~~~eV~LvD~~~---~~~~~~dl~~--~~~--~~~~--~-~i~~t~d~~  109 (270)
                      ||+|||+ |..|+++|..|+.++        +  +|.++.+++   .......+..  ...  .+.+  . .+..++|++
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~--~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~   77 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEE--SVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLV   77 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCc--eEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHH
Confidence            6999998 999999999999888        6  999999854   1222222221  111  1111  1 234567999


Q ss_pred             HHhCCCCEEEEcC
Q 024248          110 DALTGMDIVIIPA  122 (270)
Q Consensus       110 ~al~~ADvVIi~a  122 (270)
                      +++++||+||++.
T Consensus        78 eal~~ADiIIlAV   90 (342)
T TIGR03376        78 EAAKGADILVFVI   90 (342)
T ss_pred             HHHhcCCEEEEEC
Confidence            9999999999985

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02253 xanthoxin dehydrogenase

Probab=98.08  E-value=0.00011  Score=65.60  Aligned_cols=162  Identities=17%  Similarity=0.152  Sum_probs=89.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee-eeeccCCHHHHh-------CC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR-GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~-~i~~t~d~~~al-------~~  114 (270)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|++....  ...++........+. .+....++++++       ..
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~   94 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT   94 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            345799999999999999999999998  999999864321  112221100000000 011111222333       36


Q ss_pred             CCEEEEcCCCCCCC-C----Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          115 MDIVIIPAGVPRKP-G----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       115 ADvVIi~ag~~~~~-g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .|++|+++|..... .    .+   ....+..|+.....+++.+.+.   ...+.+++++.....            .+.
T Consensus        95 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~------------~~~  162 (280)
T PLN02253         95 LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASA------------IGG  162 (280)
T ss_pred             CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhc------------ccC
Confidence            89999999864321 1    11   2235667766655555544432   134566666533220            022


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +..-.++.++.....+.+.+++.++-.--.+++..-|
T Consensus       163 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg  199 (280)
T PLN02253        163 LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPY  199 (280)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeC
Confidence            3334577766666677888888875433333433333

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=98.08  E-value=7.4e-05  Score=67.38  Aligned_cols=167  Identities=17%  Similarity=0.109  Sum_probs=92.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-h-HHHHhhccccCcceee----eeccCCHHHHhC--CCCEEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-G-VTADISHMDTNAVVRG----FLGQQQLEDALT--GMDIVI  119 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~-~~~dl~~~~~~~~~~~----i~~t~d~~~al~--~ADvVI  119 (270)
                      ||.|+||+|++|..++..|.++|.  +|+++|+.... . ....+...   ..+..    +....+++++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999999998  89999864321 1 11111110   01111    111123444554  689999


Q ss_pred             EcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhH
Q 024248          120 IPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV  196 (270)
Q Consensus       120 i~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt  196 (270)
                      +++|......  ....+.+..|+.....+++.+.+.... .++++|.. +....  -...+.+.....+...++.++...
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~ss~~~~g~~--~~~~~~e~~~~~~~~~y~~sK~~~  152 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSSSAAVYGEP--SSIPISEDSPLGPINPYGRSKLMS  152 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEecchhhcCCC--CCCCccccCCCCCCCchHHHHHHH
Confidence            9998642211  123345678999999999998876433 34444421 10000  000000111111223456655555


Q ss_pred             HHHHHHHHHH-hCCCCCccc-eEEEccC
Q 024248          197 VRANTFVAEV-LGLDPREVD-VPVVGGH  222 (270)
Q Consensus       197 ~r~~~~lA~~-l~v~~~~v~-~~V~G~h  222 (270)
                      .++...+++. .+++...++ +.++|.+
T Consensus       153 e~~~~~~~~~~~~~~~~ilR~~~v~g~~  180 (328)
T TIGR01179       153 ERILRDLSKADPGLSYVILRYFNVAGAD  180 (328)
T ss_pred             HHHHHHHHHhccCCCEEEEecCcccCCC
Confidence            5665666665 677666665 3666653

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK05865 hypothetical protein; Provisional

Probab=98.07  E-value=1.6e-05  Score=81.88  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      |||.|+||+|++|++++..|+.+|+  +|+++|++....    +.. .. ..+. .+....+++++++++|+||++|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~v-~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-SA-DFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-Cc-eEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            7999999999999999999999998  999999864211    000 00 0000 1112234567788999999998653


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP  165 (270)
                      ..       ....|+....++++.+++.... .++++|.+
T Consensus        73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~  104 (854)
T PRK05865         73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSG  104 (854)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCc
Confidence            21       3467888899999998876433 55656654

>PRK06482 short chain dehydrogenase; Provisional

Probab=98.07  E-value=0.00011  Score=65.35  Aligned_cols=144  Identities=12%  Similarity=-0.005  Sum_probs=80.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeee-ccCC---HHHH-------hCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l~~A  115 (270)
                      ++|.|+||+|++|+.++..|+.+|.  .|++++++...  ..++.... ...+..+. .-+|   ++++       +...
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999998  89999886431  11111110 00111000 0112   2222       3457


Q ss_pred             CEEEEcCCCCCCCC-C--c---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          116 DIVIIPAGVPRKPG-M--T---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       116 DvVIi~ag~~~~~g-~--~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      |+||+++|...... .  +   ....+..|+.....+++.+.++   .....++++|.-...            .+.|..
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~  145 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQ------------IAYPGF  145 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccc------------cCCCCC
Confidence            99999998653211 1  1   1234567888777777776332   233456655532210            123444


Q ss_pred             CeeeechhhHHHHHHHHHHHh
Q 024248          187 RLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l  207 (270)
                      -.++.++.....+...+++.+
T Consensus       146 ~~Y~~sK~a~~~~~~~l~~~~  166 (276)
T PRK06482        146 SLYHATKWGIEGFVEAVAQEV  166 (276)
T ss_pred             chhHHHHHHHHHHHHHHHHHh
Confidence            456665544445666666664

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=98.06  E-value=0.00011  Score=64.54  Aligned_cols=146  Identities=16%  Similarity=0.170  Sum_probs=80.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .+++.|+|++|++|.+++..|++.|.  +|+++++++...  ...++.+..  ..+..    +....++++++       
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999999  999999976321  122232211  11111    11111122222       


Q ss_pred             CCCCEEEEcCCCCCCC---C---CchhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~---g---~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|+||+++|.....   .   ....+.+..|+..    .+.+++.+.+..+.+.|+++|.-..            ..+
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~------------~~~  150 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHS------------HEA  150 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhh------------cCC
Confidence            3589999999864211   1   1122344566665    5666666633334456666553211            012


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHh
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .|..-.++.++.....+-+.+++.+
T Consensus       151 ~~~~~~y~~sk~a~~~~~~~la~~~  175 (262)
T PRK13394        151 SPLKSAYVTAKHGLLGLARVLAKEG  175 (262)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHh
Confidence            3333445655444444555566664

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.05  E-value=8.8e-05  Score=68.52  Aligned_cols=99  Identities=19%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc------C-c---ceeeeeccCCHHHHhCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------N-A---VVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~------~-~---~~~~i~~t~d~~~al~~A  115 (270)
                      .|||+|+|+ |.+|+.++..|+..|+  +|.++|+++..   ..+.....      . .   ....+..+++. ++++++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   74 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG---DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA   74 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH---HHHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence            379999998 9999999999999998  99999985321   11111000      0 0   00112234565 578999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCC
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN  167 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~  167 (270)
                      |+||++...+.                ..++++.+... .++.+|+..+|..+
T Consensus        75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~  111 (341)
T PRK08229         75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVR  111 (341)
T ss_pred             CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence            99999874321                12334455544 35677777788776

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=98.04  E-value=0.0001  Score=64.65  Aligned_cols=155  Identities=14%  Similarity=0.134  Sum_probs=81.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc-ccCcc-ee-eeeccCCHHH-------HhCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAV-VR-GFLGQQQLED-------ALTGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~-~~~~~-~~-~i~~t~d~~~-------al~~AD  116 (270)
                      |+|.|+||+|.+|..++..|+.+|.  +|+++++++....  .+... ..... +. .+....++++       .+.+.|
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   76 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQ--ELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNID   76 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            6899999999999999999999998  9999999753211  11110 00000 00 0111111222       234799


Q ss_pred             EEEEcCCCCCC--C--CCch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      +||+++|....  +  ..+.   .+.+..|+.....+.+.+.++   ...+.++++|.....            .+++..
T Consensus        77 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~  144 (248)
T PRK10538         77 VLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS------------WPYAGG  144 (248)
T ss_pred             EEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccC------------CCCCCC
Confidence            99999986421  1  1121   234566666544444444332   223456666643221            123334


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ..++.++.....+-..++..++  +..+++.++
T Consensus       145 ~~Y~~sK~~~~~~~~~l~~~~~--~~~i~v~~v  175 (248)
T PRK10538        145 NVYGATKAFVRQFSLNLRTDLH--GTAVRVTDI  175 (248)
T ss_pred             chhHHHHHHHHHHHHHHHHHhc--CCCcEEEEE
Confidence            4566644333445566666654  334544433

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.04  E-value=3.7e-05  Score=70.88  Aligned_cols=72  Identities=25%  Similarity=0.404  Sum_probs=50.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccc---c---Cccee-eeeccCCHHHHhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---T---NAVVR-GFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~---~---~~~~~-~i~~t~d~~~al~~ADvV  118 (270)
                      .|||+|||+ |.+|+.++..|+..|+  +|+++|+++....  ++....   .   ...+. .+..+++++++++++|+|
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~--~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~V   78 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAA--ALAAERENREYLPGVALPAELYPTADPEEALAGADFA   78 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEE
Confidence            579999998 9999999999999998  9999999753221  122110   0   00000 022355787888999999


Q ss_pred             EEcC
Q 024248          119 IIPA  122 (270)
Q Consensus       119 Ii~a  122 (270)
                      |++.
T Consensus        79 i~~v   82 (328)
T PRK14618         79 VVAV   82 (328)
T ss_pred             EEEC
Confidence            9986

>PRK12829 short chain dehydrogenase; Provisional

Probab=98.03  E-value=0.00019  Score=62.97  Aligned_cols=149  Identities=20%  Similarity=0.248  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHH-------HhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLED-------ALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~-------al~~A  115 (270)
                      +.+++.|+||+|.+|..++..|+++|+  +|+++++++....  ..++.........-.+....++.+       .+.++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   87 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGL   87 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            446999999999999999999999999  8999999753211  111111100000000111111212       23578


Q ss_pred             CEEEEcCCCCCCCCC----c---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          116 DIVIIPAGVPRKPGM----T---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       116 DvVIi~ag~~~~~g~----~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      |+||+++|.....+.    +   -...+..|......+.+.+    .+......++++|.....            .++|
T Consensus        88 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~------------~~~~  155 (264)
T PRK12829         88 DVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGR------------LGYP  155 (264)
T ss_pred             CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccc------------cCCC
Confidence            999999986522211    1   1233456665555555554    332222455555432210            1344


Q ss_pred             CCCeeeechhhHHHHHHHHHHHh
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      ..-.++.++-....+...+++.+
T Consensus       156 ~~~~y~~~K~a~~~~~~~l~~~~  178 (264)
T PRK12829        156 GRTPYAASKWAVVGLVKSLAIEL  178 (264)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHH
Confidence            44445555444445666666665

>PRK05717 oxidoreductase; Validated

Probab=98.02  E-value=0.0001  Score=64.86  Aligned_cols=146  Identities=15%  Similarity=0.148  Sum_probs=85.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH--HHhhccccCcce-e-eeeccCCHHHH-------hCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTNAVV-R-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~--~dl~~~~~~~~~-~-~i~~t~d~~~a-------l~~A  115 (270)
                      ++|.|+||+|++|.+++..|+..|.  +|+++|++......  .++..   .... . .+....+++++       +...
T Consensus        11 k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717         11 RVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALGE---NAWFIAMDVADEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcCC---ceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999999998  99999986532211  11110   0000 0 01111111111       2357


Q ss_pred             CEEEEcCCCCCCCC-----Cc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~g-----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|+++|......     .+   ....+..|+.....+++.+.++.  ..+.++++|.....            .+.+.
T Consensus        86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~------------~~~~~  153 (255)
T PRK05717         86 DALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR------------QSEPD  153 (255)
T ss_pred             CEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc------------CCCCC
Confidence            99999998653211     11   12456788877777777776432  34566666543221            12233


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGL  209 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v  209 (270)
                      .-.++.++.....+.+.+++.++-
T Consensus       154 ~~~Y~~sKaa~~~~~~~la~~~~~  177 (255)
T PRK05717        154 TEAYAASKGGLLALTHALAISLGP  177 (255)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhcC
Confidence            344666655555677888888764

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=98.02  E-value=4.6e-05  Score=67.25  Aligned_cols=114  Identities=17%  Similarity=0.110  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee--eeec-cCCHHHHh-CCCCEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR--GFLG-QQQLEDAL-TGMDIV  118 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~--~i~~-t~d~~~al-~~ADvV  118 (270)
                      +.+.|||+|+||+|++|..++..|+.+|+  +|+++.++....... +... ....+.  .+.. ..++.+++ .++|+|
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~~-~~~~~~~~Dl~d~~~~l~~~~~~~~d~v   89 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQD-PSLQIVRADVTEGSDKLVEAIGDDSDAV   89 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-cccC-CceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence            44567999999999999999999999998  898887764321110 1110 000000  0111 12344566 689999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      |+++|.....+.  .+....|......+++.+.+.... .|+++|
T Consensus        90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iS  131 (251)
T PLN00141         90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILVS  131 (251)
T ss_pred             EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEEc
Confidence            998875422111  122345666678888888765433 444444

>PRK06180 short chain dehydrogenase; Provisional

Probab=98.02  E-value=0.00023  Score=63.52  Aligned_cols=144  Identities=10%  Similarity=0.034  Sum_probs=79.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHh-------CCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDAL-------TGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al-------~~A  115 (270)
                      ++|.|+||+|.+|.+++..|+.+|.  +|++++++....  .++.... ...+..    +....++.+++       ...
T Consensus         5 ~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~   79 (277)
T PRK06180          5 KTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGPI   79 (277)
T ss_pred             CEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999999998  999999875321  1221110 001100    11111122222       358


Q ss_pred             CEEEEcCCCCCCC---CCch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          116 DIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      |+||+++|.....   ..+.   ...+..|+.....+.+.+...   ...+.++++|.-...            .+.|..
T Consensus        80 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~------------~~~~~~  147 (277)
T PRK06180         80 DVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGL------------ITMPGI  147 (277)
T ss_pred             CEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEeccccc------------CCCCCc
Confidence            9999999864211   1111   233677877777677665432   223456666643221            123334


Q ss_pred             CeeeechhhHHHHHHHHHHHh
Q 024248          187 RLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l  207 (270)
                      -.++.++.....+.+.++..+
T Consensus       148 ~~Y~~sK~a~~~~~~~la~e~  168 (277)
T PRK06180        148 GYYCGSKFALEGISESLAKEV  168 (277)
T ss_pred             chhHHHHHHHHHHHHHHHHHh
Confidence            445554443334555566554

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.02  E-value=6.3e-05  Score=69.28  Aligned_cols=100  Identities=15%  Similarity=0.341  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc--c-c-C--ccee-eeeccCCHHHHh-CCCCEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D-T-N--AVVR-GFLGQQQLEDAL-TGMDIV  118 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~--~-~-~--~~~~-~i~~t~d~~~al-~~ADvV  118 (270)
                      |||+|+|+ |.+|+.++..|.+.|+  +|.+++++++.  ...+...  . . .  ..+. .+..++++++++ .++|+|
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dli   75 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTT--FESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCI   75 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHH--HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEE
Confidence            79999998 9999999999999998  99999997532  2222211  0 0 0  0011 122356777776 589999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhH-h-CCCCEEEEecCCCC
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C-CPKAIVNLISNPVN  167 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~-~p~a~viv~sNPv~  167 (270)
                      |++..                ...+.++++.+.. + .++..++..+|-.+
T Consensus        76 iiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~  110 (326)
T PRK14620         76 ILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE  110 (326)
T ss_pred             EEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence            99862                1223455555554 3 35666777777654

>PRK08643 acetoin reductase; Validated

Probab=98.01  E-value=0.00043  Score=60.71  Aligned_cols=157  Identities=20%  Similarity=0.187  Sum_probs=83.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHH-------hCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~A  115 (270)
                      +++.|+|++|.+|.+++..|+++|.  +|+++|++....  ...++.+...... +. .+....+++++       +...
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            3789999999999999999999998  999999875321  1222322110000 00 01111112222       3468


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHH----HHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |+||+++|......   .+   ....+..|+.....    +.+.+.+..+++.++++|.....            .+.|.
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~  148 (256)
T PRK08643         81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGV------------VGNPE  148 (256)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccc------------cCCCC
Confidence            99999998642111   11   12234566654443    33444333345667766643321            02333


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .-.++.++.....+.+.+++.+  .+..+++.++
T Consensus       149 ~~~Y~~sK~a~~~~~~~la~e~--~~~gi~v~~i  180 (256)
T PRK08643        149 LAVYSSTKFAVRGLTQTAARDL--ASEGITVNAY  180 (256)
T ss_pred             CchhHHHHHHHHHHHHHHHHHh--cccCcEEEEE
Confidence            3345555444445666677765  3444554443

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.01  E-value=0.00012  Score=63.81  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .++|+|+||+|.+|..++..|+++|+  +|++++++..
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~   40 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEE   40 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35899999999999999999999998  8999999764

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=98.01  E-value=2.6e-05  Score=71.29  Aligned_cols=168  Identities=18%  Similarity=0.116  Sum_probs=97.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-----hhHHHHhhccccCcceee----eeccCCHHHHh--CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRG----FLGQQQLEDAL--TG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-----~~~~~dl~~~~~~~~~~~----i~~t~d~~~al--~~  114 (270)
                      .++|.|+||+||||++.+..|+.+|+  +|+++|....     -..+..+.+.  ...+..    +.....+++.+  ..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence            35899999999999999999999999  9999998642     1112223321  111111    11011123323  35


Q ss_pred             CCEEEEcCCCCCC-CC-CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCCcHH--HHHHHHHHhCCCC-CCCe
Q 024248          115 MDIVIIPAGVPRK-PG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVP--IAAEVFKKVGTYD-PKRL  188 (270)
Q Consensus       115 ADvVIi~ag~~~~-~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~~~~--i~t~~~~~~sg~p-~~kv  188 (270)
                      -|-|++.|+...- +. +.+..+...|+-...++++.+++++ -..++..| -.+.....  .+++-    .-.. +-..
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~-~~~~V~sssatvYG~p~~ip~te~----~~t~~p~~p  152 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN-VKALVFSSSATVYGLPTKVPITEE----DPTDQPTNP  152 (343)
T ss_pred             CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC-CceEEEecceeeecCcceeeccCc----CCCCCCCCc
Confidence            7889998764321 11 2356778899999999999999987 33333332 22222110  11111    0111 3345


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCcc-ceEEEccC
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH  222 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v-~~~V~G~h  222 (270)
                      +|.|....+.....+.+.++.....+ ++.++|.|
T Consensus       153 yg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~  187 (343)
T KOG1371|consen  153 YGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAH  187 (343)
T ss_pred             chhhhHHHHHHHHhhhccccceEEEEEeccccCcc
Confidence            67776666667777777777666666 34555533

>PRK08267 short chain dehydrogenase; Provisional

Probab=98.00  E-value=0.00013  Score=64.28  Aligned_cols=115  Identities=22%  Similarity=0.258  Sum_probs=65.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH--HHhhccccCcceeeeeccCCHHHHh--------CCCCE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTNAVVRGFLGQQQLEDAL--------TGMDI  117 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~--~dl~~~~~~~~~~~i~~t~d~~~al--------~~ADv  117 (270)
                      ++.|+||+|.+|..++..|+.+|.  +|+++|++......  .++.........-.+....++++++        ...|+
T Consensus         3 ~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          3 SIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            599999999999999999999998  99999987542111  1111000000000011111222222        34699


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecC
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sN  164 (270)
                      ||+++|......   .+   ....+..|+.....+++.+.++   .+.+.++++|.
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  136 (260)
T PRK08267         81 LFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSS  136 (260)
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence            999998653211   11   2334667777666666555432   34455666654

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.99  E-value=0.00016  Score=63.25  Aligned_cols=115  Identities=16%  Similarity=0.213  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHH-------hCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~A  115 (270)
                      ++|.|+|++|++|.+++..|+.+|+  +|++++++....  ...++........ +. .+....+++++       +.+.
T Consensus         5 ~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          5 KVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999998  999999975421  1223321110000 00 01111122222       2468


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      |+||+++|......   .+   ..+.+..|+..    .+.+.+.+++.. ...|+++|.
T Consensus        83 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss  140 (258)
T PRK12429         83 DILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMAS  140 (258)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            99999998642211   11   12234455554    566666665543 345555553

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.98  E-value=6.3e-05  Score=67.89  Aligned_cols=165  Identities=12%  Similarity=0.078  Sum_probs=87.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHH----hCCCCEEEEcCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA----LTGMDIVIIPAGV  124 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~a----l~~ADvVIi~ag~  124 (270)
                      |.|+||+|++|++++..|+..|+ .+|+++|+.........+........   +.....++..    +.++|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADY---IDKEDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeecc---CcchhHHHHHHhhccCCCCEEEECccc
Confidence            57999999999999999999885 27888887543211111111000000   0001112222    2489999999986


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCC-CCCCCeeeechhhHHHHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGT-YDPKRLLGVTMLDVVRANTF  202 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg-~p~~kviG~t~ldt~r~~~~  202 (270)
                      ......+....+..|+.....+++.+.+...  .++++|.. +....   ...+.+... ..+...+|.++.....+...
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~---~~~~~e~~~~~~p~~~Y~~sK~~~e~~~~~  151 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYASSAATYGDG---EAGFREGRELERPLNVYGYSKFLFDQYVRR  151 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEccHHhcCCC---CCCcccccCcCCCCCHHHHHHHHHHHHHHH
Confidence            4322223345667899999999999987643  45555531 11000   000000000 11233466665555444433


Q ss_pred             HH-H-HhCCCCCccc-eEEEccC
Q 024248          203 VA-E-VLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       203 lA-~-~l~v~~~~v~-~~V~G~h  222 (270)
                      .. + ..+++...++ +.++|..
T Consensus       152 ~~~~~~~~~~~~~lR~~~vyG~~  174 (314)
T TIGR02197       152 RVLPEALSAQVVGLRYFNVYGPR  174 (314)
T ss_pred             HhHhhccCCceEEEEEeeccCCC
Confidence            22 2 2344555554 4788865

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK06182 short chain dehydrogenase; Validated

Probab=97.97  E-value=0.00023  Score=63.34  Aligned_cols=114  Identities=14%  Similarity=0.113  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh-------CCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-------TGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al-------~~ADvV  118 (270)
                      .++|+|+|++|.+|..++..|+.+|+  +|++++++....  .++.........-.+....++++.+       .+.|++
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l--~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKM--EDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            35899999999999999999999998  999999875321  1221110000000111111233333       378999


Q ss_pred             EEcCCCCCCCC---C---chhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecC
Q 024248          119 IIPAGVPRKPG---M---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       119 Ii~ag~~~~~g---~---~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      |+++|......   .   +....+..|+..    ++.+++.+++... +.++++|.
T Consensus        79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         79 VNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            99998643211   1   122344566544    5666666665433 45665553

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.97  E-value=0.00024  Score=61.93  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=85.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCc-cee-eeeccCCHHH-------HhCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNA-VVR-GFLGQQQLED-------ALTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~-~~~-~i~~t~d~~~-------al~~  114 (270)
                      .+++.|+|++|++|.+++..|+++|.  +|+++|+++...  ...++.+..... .+. .+....++++       .+..
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG   83 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            35899999999999999999999998  999999975321  111222111000 010 0111111111       2246


Q ss_pred             CCEEEEcCCCCCC--C----CCc---hhhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          115 MDIVIIPAGVPRK--P----GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       115 ADvVIi~ag~~~~--~----g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .|+||+++|....  +    ..+   ..+.+..|+.....+.+.+.++.   ..+.++++|.-..               
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~---------------  148 (250)
T PRK07774         84 IDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAA---------------  148 (250)
T ss_pred             CCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccc---------------
Confidence            8999999986421  1    111   12345677776666666665542   2356666653211               


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +++.-.++.++.....+.+.+++.+.-  ..+.+.++
T Consensus       149 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~--~~i~v~~v  183 (250)
T PRK07774        149 WLYSNFYGLAKVGLNGLTQQLARELGG--MNIRVNAI  183 (250)
T ss_pred             cCCccccHHHHHHHHHHHHHHHHHhCc--cCeEEEEE
Confidence            222234566555555567777777642  34544333

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.96  E-value=0.00019  Score=64.24  Aligned_cols=112  Identities=10%  Similarity=0.065  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHh--------CCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDAL--------TGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al--------~~ADv  117 (270)
                      ++|.|+||+|.+|..++..|+.+|.  +|++.+++....  .++..... ..+. .+....++++++        ...|+
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEGL-EAFQLDYAEPESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCc-eEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence            4799999999999999999999998  999999875321  11211100 0000 011111122222        24699


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecC
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      +|.++|......   .+   ....+..|+..    .+.+++.+++.. .+.|+++|.
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS  135 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS  135 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence            999988643211   11   12345667655    566666666543 345666653

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.95  E-value=0.00025  Score=62.22  Aligned_cols=146  Identities=11%  Similarity=0.065  Sum_probs=82.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh-------CCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-------TGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al-------~~ADvV  118 (270)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++... .   ..........-.+....++++.+       ...|+|
T Consensus         6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~-~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE-T---VDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh-h---hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            45899999999999999999999998  99999987532 0   00000000000011111222222       356999


Q ss_pred             EEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          119 IIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       119 Ii~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      |+++|......   .+   ....+..|+.....+++.+.+.    ...+.++++|.-...            .+.|..-.
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~------------~~~~~~~~  147 (252)
T PRK07856         80 VNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGR------------RPSPGTAA  147 (252)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccC------------CCCCCCch
Confidence            99998642111   11   2234567777666666665432    223566666643221            12333344


Q ss_pred             eeechhhHHHHHHHHHHHhCC
Q 024248          189 LGVTMLDVVRANTFVAEVLGL  209 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v  209 (270)
                      ++.++.....+.+.++..++-
T Consensus       148 Y~~sK~a~~~l~~~la~e~~~  168 (252)
T PRK07856        148 YGAAKAGLLNLTRSLAVEWAP  168 (252)
T ss_pred             hHHHHHHHHHHHHHHHHHhcC
Confidence            555555555677778887753

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.94  E-value=0.00049  Score=61.43  Aligned_cols=161  Identities=16%  Similarity=0.160  Sum_probs=90.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---------HHHHhhccccCcc-ee-eeeccCCHHHHh---
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---------VTADISHMDTNAV-VR-GFLGQQQLEDAL---  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---------~~~dl~~~~~~~~-~~-~i~~t~d~~~al---  112 (270)
                      +++.|+||+|++|..++..|+++|.  +|++++++....         ...++........ +. .+....++++.+   
T Consensus         7 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~   84 (273)
T PRK08278          7 KTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA   84 (273)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            4799999999999999999999998  999999865310         1112221100000 00 011111222222   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          113 ----TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       113 ----~~ADvVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                          ...|++|+++|.....   ..+.   ...+..|+.....+++.+..+   ...+.++++|.+...          .
T Consensus        85 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~----------~  154 (273)
T PRK08278         85 VERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL----------D  154 (273)
T ss_pred             HHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc----------c
Confidence                3689999999864211   1121   224556766666666655432   234666666643321          1


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      ...++..-.++.++.....+.+.+++.++  +..|++..+-.
T Consensus       155 ~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~P  194 (273)
T PRK08278        155 PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALWP  194 (273)
T ss_pred             ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEeC
Confidence            11123345577776666678888888876  34566555543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.93  E-value=7.7e-05  Score=67.34  Aligned_cols=64  Identities=17%  Similarity=0.224  Sum_probs=46.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|||. |.+|..++..|...|+  +|.++|+++... .+.+....      .  ..+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g~~------~--~~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERGLV------D--EASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCc------c--cccCCH-hHhcCCCEEEEcC
Confidence            68999997 9999999999999998  999999875321 11111100      0  123345 5689999999996

>PRK07069 short chain dehydrogenase; Validated

Probab=97.93  E-value=0.00026  Score=61.62  Aligned_cols=153  Identities=19%  Similarity=0.178  Sum_probs=83.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC-CCh--hHHHHhhccccCcc---ee-eeeccCCHH-------HHhC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP--GVTADISHMDTNAV---VR-GFLGQQQLE-------DALT  113 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~-~~~--~~~~dl~~~~~~~~---~~-~i~~t~d~~-------~al~  113 (270)
                      ||+|+|++|.+|.+++..|+.+|.  +|++++++ ...  ....++........   +. .+....+++       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            589999999999999999999998  99999987 321  11122221100000   00 111111121       2234


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|+||+++|......   .+   ....+..|+.    .++.+.+.+++.. ...++++|.....            .+.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss~~~~------------~~~  145 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISSVAAF------------KAE  145 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecChhhc------------cCC
Confidence            6899999998643211   11   1233456665    6677777776543 3456655543221            012


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVD  215 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~  215 (270)
                      +..-.++.++..-..+.+.+++.+.-....++
T Consensus       146 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~  177 (251)
T PRK07069        146 PDYTAYNASKAAVASLTKSIALDCARRGLDVR  177 (251)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence            22233555554445566777777654333343

>PRK09135 pteridine reductase; Provisional

Probab=97.92  E-value=0.00049  Score=59.69  Aligned_cols=148  Identities=15%  Similarity=0.151  Sum_probs=84.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhcccc-Ccc-ee-eeeccCCHHHHh-------C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDT-NAV-VR-GFLGQQQLEDAL-------T  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~-~~~-~~-~i~~t~d~~~al-------~  113 (270)
                      ++|.|+||+|++|.+++..|+++|+  +|+++++....   ....++.+... ... +. .+....++.+++       .
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999985321   11122222100 000 00 011111122223       3


Q ss_pred             CCCEEEEcCCCCCCC--C----CchhhhHHhhHHHHHHHHHHHhHhCC--CCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          114 GMDIVIIPAGVPRKP--G----MTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~--g----~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      ..|+||+++|.....  .    .+..+.+..|+.....+.+.+.++-.  .+.++..+. ..           ....+++
T Consensus        85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~  152 (249)
T PRK09135         85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD-IH-----------AERPLKG  152 (249)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC-hh-----------hcCCCCC
Confidence            579999999853211  1    11234567788877777777765321  234443332 11           1123455


Q ss_pred             CCeeeechhhHHHHHHHHHHHhC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ...++.++.....+...+++.++
T Consensus       153 ~~~Y~~sK~~~~~~~~~l~~~~~  175 (249)
T PRK09135        153 YPVYCAAKAALEMLTRSLALELA  175 (249)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHC
Confidence            55677777666667777777764

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.92  E-value=0.00026  Score=62.21  Aligned_cols=146  Identities=17%  Similarity=0.146  Sum_probs=83.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~AD  116 (270)
                      .++.|+|++|.+|..++..|+++|.  +|+++|++.....  ..++... . ..+. .+....+++++       +...|
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPA-A-IAVSLDVTRQDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCc-e-EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999998  9999999764221  1122110 0 0000 01111122222       34689


Q ss_pred             EEEEcCCCCCCCC---C---chhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ++|+++|......   .   +....+..|+.....+++.+.+.    ...+.++++|.....            .+.|..
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~  150 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR------------RGEALV  150 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC------------CCCCCC
Confidence            9999988542111   1   12234667777766666666443    234566666643221            123444


Q ss_pred             CeeeechhhHHHHHHHHHHHhC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      -.++.++.....+.+.+++.+.
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~~  172 (257)
T PRK07067        151 SHYCATKAAVISYTQSAALALI  172 (257)
T ss_pred             chhhhhHHHHHHHHHHHHHHhc
Confidence            4566655444556677777653

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.91  E-value=0.00036  Score=61.28  Aligned_cols=147  Identities=15%  Similarity=0.083  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      .++|.|+||+|.+|..++..|+.+|+  +|++.|+++...  ....+....  ..+..    +....+++++       +
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999998  999999875321  111222110  01110    1111122222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ...|+||+++|......   .+   -...+..|+.....+++.+.++.   ..+.++++|.....            .+.
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~------------~~~  153 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSA------------LAR  153 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhc------------cCC
Confidence            45799999998642111   11   12345677776666666665542   34566666643321            023


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      |..-.++.++.....+.+.++..++
T Consensus       154 ~~~~~y~~sK~a~~~~~~~~a~e~~  178 (255)
T PRK07523        154 PGIAPYTATKGAVGNLTKGMATDWA  178 (255)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhh
Confidence            3333455554444456666776653

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.91  E-value=0.00011  Score=70.58  Aligned_cols=66  Identities=24%  Similarity=0.330  Sum_probs=48.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+||||+|.+|..++..|...|+  +|.++|+++...  .++....   .+   ..+++.++++.+||+||+++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~---gv---~~~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL---GV---EYANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc---CC---eeccCHHHHhccCCEEEEec
Confidence            7999998669999999999999998  999999875322  1111110   01   12446778899999999986

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.91  E-value=0.00024  Score=62.46  Aligned_cols=117  Identities=13%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------hC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l~  113 (270)
                      .+|.|+|++|.+|.+++..|+++|.  +|+++|++....  ...++........+..+. ..++   .+.+       +.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999998  999999875321  111222110001111110 1112   2222       24


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCC
Q 024248          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNP  165 (270)
                      ..|+||+++|......   .+.   ...+..|+...    +.+.+.+.+..+++.++++|..
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~  142 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK  142 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence            5799999998653211   111   22345566543    4444544443334567766654

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.91  E-value=5.5e-05  Score=59.77  Aligned_cols=111  Identities=20%  Similarity=0.258  Sum_probs=65.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc--ccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~--~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      ||+|+||+|++|..++.+|...+.++-+.+++.....++...-...  .....+. +. ..+. +.+.++|+||.+.+  
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~Dvvf~a~~--   75 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLS-VE-DADP-EELSDVDVVFLALP--   75 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEB-EE-ETSG-HHHTTESEEEE-SC--
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhcccccccccee-Ee-ecch-hHhhcCCEEEecCc--
Confidence            7999999999999999999998877777777776533322211111  0011111 11 1344 56899999999852  


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechh
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~l  194 (270)
                                    ....+++++.+.+  .+.++  +.+..+.             .+.++.++|+..+
T Consensus        76 --------------~~~~~~~~~~~~~--~g~~V--iD~s~~~-------------R~~~~~~~~~pev  113 (121)
T PF01118_consen   76 --------------HGASKELAPKLLK--AGIKV--IDLSGDF-------------RLDDDVPYGLPEV  113 (121)
T ss_dssp             --------------HHHHHHHHHHHHH--TTSEE--EESSSTT-------------TTSTTSEEE-HHH
T ss_pred             --------------hhHHHHHHHHHhh--CCcEE--EeCCHHH-------------hCCCCCCEEeCCc
Confidence                          1233556666643  33444  4444442             2556778888544

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.91  E-value=0.00013  Score=67.93  Aligned_cols=114  Identities=16%  Similarity=0.148  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc----ccCc-c--e-eeeeccCCHHHHhCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTNA-V--V-RGFLGQQQLEDALTGMD  116 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~----~~~~-~--~-~~i~~t~d~~~al~~AD  116 (270)
                      +.|||+|+|+ |.+|+.++..|+..+   +++++.+++..  ..++...    ...+ .  + ..+..++|++++++++|
T Consensus         6 ~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aD   79 (341)
T PRK12439          6 REPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCAD   79 (341)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCC
Confidence            4579999998 999999999999887   46777765432  2222211    0001 1  1 11334678888899999


Q ss_pred             EEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcH-HHHHHHHHHh
Q 024248          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTV-PIAAEVFKKV  180 (270)
Q Consensus       117 vVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~-~i~t~~~~~~  180 (270)
                      +||++..                ...+.++++.+..+. ++..++.++|-.+..+ -.+++.+.+.
T Consensus        80 lVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~  129 (341)
T PRK12439         80 VVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV  129 (341)
T ss_pred             EEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH
Confidence            9999862                123456666666543 5667777887655311 2345555553

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.91  E-value=1.1e-05  Score=73.14  Aligned_cols=151  Identities=19%  Similarity=0.180  Sum_probs=81.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi~ag~  124 (270)
                      |||.|+|++|++|+.+...|..+++  +++.+++..     .|+.+..            .+.+.++  ..|+||++|+.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~------------~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE------------AVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH------------HHHHHHHHH--SEEEE----
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH------------HHHHHHHHhCCCeEecccee
Confidence            8999999999999999999999888  899997652     2333321            1112222  58999999876


Q ss_pred             CCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHH
Q 024248          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (270)
Q Consensus       125 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~  201 (270)
                      ....  ..........|......+++.+.+.  ++.+|.+| .-|.--.  -..-+.+..--.|..++|-+++..+++-.
T Consensus        62 ~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~STd~VFdG~--~~~~y~E~d~~~P~~~YG~~K~~~E~~v~  137 (286)
T PF04321_consen   62 TNVDACEKNPEEAYAINVDATKNLAEACKER--GARLIHISTDYVFDGD--KGGPYTEDDPPNPLNVYGRSKLEGEQAVR  137 (286)
T ss_dssp             --HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEEEGGGS-SS--TSSSB-TTS----SSHHHHHHHHHHHHHH
T ss_pred             ecHHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEeeccEEEcCC--cccccccCCCCCCCCHHHHHHHHHHHHHH
Confidence            4211  0123345678899999999999864  45666554 3221000  00000011111234567778777654433


Q ss_pred             HHHHHhCCCCCccce-EEEccCCC
Q 024248          202 FVAEVLGLDPREVDV-PVVGGHAG  224 (270)
Q Consensus       202 ~lA~~l~v~~~~v~~-~V~G~hg~  224 (270)
                      .   ... +..-++. +++|.++.
T Consensus       138 ~---~~~-~~~IlR~~~~~g~~~~  157 (286)
T PF04321_consen  138 A---ACP-NALILRTSWVYGPSGR  157 (286)
T ss_dssp             H---H-S-SEEEEEE-SEESSSSS
T ss_pred             H---hcC-CEEEEecceecccCCC
Confidence            2   222 3333354 88999765

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.91  E-value=7.9e-05  Score=69.62  Aligned_cols=178  Identities=19%  Similarity=0.176  Sum_probs=100.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCccee----eeeccCCHHHHhCCCCEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVR----GFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~~~----~i~~t~d~~~al~~ADvVI  119 (270)
                      +..+++|+||+||+|.+++..|.+++...+|.++|.... .....+.... ....+.    .+....++..|++++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence            445899999999999999999999985569999999753 1111111110 011111    122233567889999 777


Q ss_pred             EcCCCCC-CCCC-chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC--CCCcHHHHHHHHHHhCCCCCCC---eeeec
Q 024248          120 IPAGVPR-KPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP--VNSTVPIAAEVFKKVGTYDPKR---LLGVT  192 (270)
Q Consensus       120 i~ag~~~-~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP--v~~~~~i~t~~~~~~sg~p~~k---viG~t  192 (270)
                      +++..+. .... .+......|++..+++++.+.+.+-+ .+|+.|+.  +....++..  ..+...+| .+   .++-+
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs~~Vvf~g~~~~n--~~E~~p~p-~~~~d~Y~~s  156 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK-RLIYTSSAYVVFGGEPIIN--GDESLPYP-LKHIDPYGES  156 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC-EEEEecCceEEeCCeeccc--CCCCCCCc-cccccccchH
Confidence            7654432 2222 35566788999999999999987533 34433332  110001000  01111233 23   34556


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccce-EEEccCCCCceee
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILP  229 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg~~~~vp  229 (270)
                      +...+++-...+..-++.+..++. .++|+ |+...+|
T Consensus       157 Ka~aE~~Vl~an~~~~l~T~aLR~~~IYGp-gd~~~~~  193 (361)
T KOG1430|consen  157 KALAEKLVLEANGSDDLYTCALRPPGIYGP-GDKRLLP  193 (361)
T ss_pred             HHHHHHHHHHhcCCCCeeEEEEccccccCC-CCccccH
Confidence            666555544433333355666654 77786 4644544

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.91  E-value=0.00018  Score=63.64  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh-------CCCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-------TGMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al-------~~ADvVI  119 (270)
                      .+|.|+||+|.+|.+++..|+.+|.  +|++.+++......  .... .... -.+....++++++       ...|+||
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~-~~~~-~D~~d~~~~~~~~~~~~~~~g~~d~li   78 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGV-ELLE-LDVTDDASVQAAVDEVIARAGRIDVLV   78 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCC-eeEE-eecCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            4799999999999999999999998  99999987432110  0000 0000 0011111233333       3579999


Q ss_pred             EcCCCCCCCCC---c---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecC
Q 024248          120 IPAGVPRKPGM---T---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (270)
Q Consensus       120 i~ag~~~~~g~---~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sN  164 (270)
                      .++|.......   +   ....+..|......+.+.    +++.. .+.|+++|.
T Consensus        79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS  132 (270)
T PRK06179         79 NNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISS  132 (270)
T ss_pred             ECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECC
Confidence            99987532111   1   233456666555445544    44333 345666654

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.90  E-value=0.00025  Score=61.30  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      .++|+|+||+|.+|..++..|+.+|.  +|++++++....  ...++...   ..+..    +....++++.       +
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999888  899999875321  11223211   11111    1111122222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHHhHh--CCCCEEEEecCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP  165 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~sNP  165 (270)
                      ..+|+||+++|......   .+.   .+.+..|+.....+++.+.+.  ...+.++++|..
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            47999999987643211   111   233555665555555554432  233556666643

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.90  E-value=0.00044  Score=59.97  Aligned_cols=118  Identities=17%  Similarity=0.244  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHH----HHhhccccCcceee--eeccCCHHHHh----
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT----ADISHMDTNAVVRG--FLGQQQLEDAL----  112 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~----~dl~~~~~~~~~~~--i~~t~d~~~al----  112 (270)
                      +.|+|.|+||+|++|..++..|+++|.  +|+++++...  ....    .++...........  +....++++.+    
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   82 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV   82 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            346899999999999999999999998  8999886432  1111    11211100000000  11111122222    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHh-H---hCCCCEEEEecC
Q 024248          113 ---TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIA-K---CCPKAIVNLISN  164 (270)
Q Consensus       113 ---~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~-~---~~p~a~viv~sN  164 (270)
                         ...|+||+++|......   .+   ....+..|......+++.+. .   ......++++|.
T Consensus        83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  147 (249)
T PRK12827         83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIAS  147 (249)
T ss_pred             HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence               46899999998653111   11   12345678877777887776 1   122344555554

>PRK06398 aldose dehydrogenase; Validated

Probab=97.89  E-value=0.00037  Score=61.66  Aligned_cols=153  Identities=14%  Similarity=0.107  Sum_probs=84.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-----HHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-----~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .+++.|+||+|.+|..++..|+..|.  +|+++++++....     ..|+.+...   +...  .....+.+...|++|+
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~~---i~~~--~~~~~~~~~~id~li~   78 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKEQ---VIKG--IDYVISKYGRIDILVN   78 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999998  9999998753211     112222110   0000  0011122347899999


Q ss_pred             cCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          121 PAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       121 ~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ++|.....   ..+   ....+..|+.....+++.+.++   ...+.|+++|.-...            .+.|..-.++.
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y~~  146 (258)
T PRK06398         79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSF------------AVTRNAAAYVT  146 (258)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhc------------cCCCCCchhhh
Confidence            99864211   111   1233566766554444444332   234566666532220            12333344666


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ++.....+-+.++..++-  . +++.++.
T Consensus       147 sKaal~~~~~~la~e~~~--~-i~vn~i~  172 (258)
T PRK06398        147 SKHAVLGLTRSIAVDYAP--T-IRCVAVC  172 (258)
T ss_pred             hHHHHHHHHHHHHHHhCC--C-CEEEEEe
Confidence            554445577777887752  2 5554443

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.89  E-value=0.00036  Score=61.72  Aligned_cols=157  Identities=15%  Similarity=0.128  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.....  ..++... . ..+. .+....+++++       +...
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~Dl~~~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLGER-A-RFIATDITDDAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCe-e-EEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            35899999999999999999999998  9999999753211  1111100 0 0000 01111122222       3467


Q ss_pred             CEEEEcCCCCCCCC--Cc---hhhhHHhhHHHHHHHHHHHhHh--CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          116 DIVIIPAGVPRKPG--MT---RDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       116 DvVIi~ag~~~~~g--~~---r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      |++|+++|......  .+   ....+..|+.....+.+.+...  .+.+.++++|.-...            .+.+..-.
T Consensus        82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~------------~~~~~~~~  149 (261)
T PRK08265         82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAK------------FAQTGRWL  149 (261)
T ss_pred             CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhc------------cCCCCCch
Confidence            99999998642211  11   1233455666555555544332  344666666532220            12233334


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ++.++..-..+.+.++..+.  +..+++.++-
T Consensus       150 Y~asKaa~~~~~~~la~e~~--~~gi~vn~v~  179 (261)
T PRK08265        150 YPASKAAIRQLTRSMAMDLA--PDGIRVNSVS  179 (261)
T ss_pred             hHHHHHHHHHHHHHHHHHhc--ccCEEEEEEc
Confidence            55554444456677777764  3456554443

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.88  E-value=0.00039  Score=60.30  Aligned_cols=149  Identities=15%  Similarity=0.093  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCccee--eeeccCCHHHHh-------C
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVR--GFLGQQQLEDAL-------T  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~--~i~~t~d~~~al-------~  113 (270)
                      .++|.|+|++|.+|+.++..|+++|.  +|+++.++...   ....++..........  .+....++++++       .
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999998  88888765421   1112222111100000  011111223333       3


Q ss_pred             CCCEEEEcCCCCCCCC---C---chhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          114 GMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ..|+||+++|......   .   .....+..|+.....+++.+.+. .+.+.++++|.....            .+.|..
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~------------~~~~~~  150 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA------------LPLPGY  150 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc------------CCCCCC
Confidence            6899999998642111   1   11233556766666666655443 244567766533221            123444


Q ss_pred             CeeeechhhHHHHHHHHHHHhC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ..++.++.....+.+.+++.++
T Consensus       151 ~~Y~~sK~a~~~~~~~~a~~~~  172 (245)
T PRK12937        151 GPYAASKAAVEGLVHVLANELR  172 (245)
T ss_pred             chhHHHHHHHHHHHHHHHHHhh
Confidence            4566655444456666777664

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.88  E-value=0.00014  Score=63.39  Aligned_cols=163  Identities=18%  Similarity=0.202  Sum_probs=87.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-h--HHHHhhccccCcc-ee-eeeccCCHHHHh-------C
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-G--VTADISHMDTNAV-VR-GFLGQQQLEDAL-------T  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~--~~~dl~~~~~~~~-~~-~i~~t~d~~~al-------~  113 (270)
                      .+++.|+||+|++|.+++..|+.+|+  +|++++++... .  ...++........ +. .+....++++++       .
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG   83 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999998  99998886421 1  1122221110000 00 011111222222       3


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      +.|+||+++|.......+..+.+..|......+++.+.++.. .+.++++|.....    .   .......|....++.+
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~----~---~~~~~~~~~~~~Y~~s  156 (248)
T PRK07806         84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAH----F---IPTVKTMPEYEPVARS  156 (248)
T ss_pred             CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhh----c---CccccCCccccHHHHH
Confidence            689999998754222222233456777777888888876543 4556656532110    0   0000012222234555


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.....+.+.++..++  +..+++.++
T Consensus       157 K~a~e~~~~~l~~~~~--~~~i~v~~v  181 (248)
T PRK07806        157 KRAGEDALRALRPELA--EKGIGFVVV  181 (248)
T ss_pred             HHHHHHHHHHHHHHhh--ccCeEEEEe
Confidence            6555566666766654  345665444

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.88  E-value=0.00025  Score=66.89  Aligned_cols=75  Identities=23%  Similarity=0.271  Sum_probs=49.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||.|||+ |.||+.+|..|++++- .+|++.|+..++ ..+.+..+.......-.......+.+.+++.|+||.++.
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence            69999998 9999999999999885 499999998542 222222211011110011122346678999999999974

>PRK07985 oxidoreductase; Provisional

Probab=97.87  E-value=0.00049  Score=62.35  Aligned_cols=146  Identities=16%  Similarity=0.044  Sum_probs=81.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--h-HHHHhhccccCcceeee-eccCCH----------HHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTNAVVRGF-LGQQQL----------EDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~-~~~dl~~~~~~~~~~~i-~~t~d~----------~~al  112 (270)
                      +++.|+||+|.+|.+++..|+.+|.  +|++.+++...  . ...++.... ...+..+ ...+|.          .+.+
T Consensus        50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4799999999999999999999998  99998865321  1 111221110 0011100 011121          1223


Q ss_pred             CCCCEEEEcCCCCCCC----CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          113 TGMDIVIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      ...|++|+.+|.....    ..+   ....+..|+.....+++.+.... ..+.|+++|.....            .+.|
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~------------~~~~  194 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAY------------QPSP  194 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhc------------cCCC
Confidence            4679999998853211    111   23346778777666766665432 34667766643221            1223


Q ss_pred             CCCeeeechhhHHHHHHHHHHHh
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      ..-.++.++..-..+-+.+|..+
T Consensus       195 ~~~~Y~asKaal~~l~~~la~el  217 (294)
T PRK07985        195 HLLDYAATKAAILNYSRGLAKQV  217 (294)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHH
Confidence            22345555544445667777765

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00025  Score=62.52  Aligned_cols=145  Identities=17%  Similarity=0.071  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .++|.|+|++|.+|..++..|+++|.  +|+++|++.....  ..++...  . .+..    +....++++++       
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~Dl~~~~~i~~~~~~~~~~~   76 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARLPKA--A-RVSVYAADVRDADALAAAAADFIAAH   76 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcccC--C-eeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999999998  9999998753211  1112111  0 1111    11111222222       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHH----HHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      ...|++|.++|......    .+   ....+..|+.....+.    +.+.+.. .+.++++|.-...            .
T Consensus        77 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~-~~~iv~isS~~~~------------~  143 (257)
T PRK07024         77 GLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR-RGTLVGIASVAGV------------R  143 (257)
T ss_pred             CCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC-CCEEEEEechhhc------------C
Confidence            23699999998643211    11   1234456655554444    4554433 3556655532220            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +.|..-.++.++.....+...++..+.
T Consensus       144 ~~~~~~~Y~asK~a~~~~~~~l~~e~~  170 (257)
T PRK07024        144 GLPGAGAYSASKAAAIKYLESLRVELR  170 (257)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhh
Confidence            234444466655555566666666553

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.84  E-value=0.00036  Score=61.06  Aligned_cols=149  Identities=19%  Similarity=0.225  Sum_probs=80.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHH-------hCCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDA-------LTGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~a-------l~~ADv  117 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|++++++.... ...++...........+....++++.       +...|+
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            35899999999999999999999998  899999875321 11122111000000001111112222       346799


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      ||+++|......   .+   ....+..|+.....+.+.+.++   ...+.++++|.-...            .+.+..-.
T Consensus        93 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~~~  160 (255)
T PRK06841         93 LVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGV------------VALERHVA  160 (255)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhc------------cCCCCCch
Confidence            999998643111   11   1234567777666666666543   224566666532210            12333333


Q ss_pred             eeechhhHHHHHHHHHHHhC
Q 024248          189 LGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~  208 (270)
                      ++.++..-..+-+.+|+.++
T Consensus       161 Y~~sK~a~~~~~~~la~e~~  180 (255)
T PRK06841        161 YCASKAGVVGMTKVLALEWG  180 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55544433445666677653

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.84  E-value=0.00021  Score=63.68  Aligned_cols=66  Identities=17%  Similarity=0.272  Sum_probs=47.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEE-eCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~--~~eV~Lv-D~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||++||. |.+|+.++..|+..++  ..+|+++ |+++..  ...+....    +   ...++.++++++||+||++.
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~g----~---~~~~~~~e~~~~aDvVil~v   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSLG----V---KTAASNTEVVKSSDVIILAV   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHcC----C---EEeCChHHHHhcCCEEEEEE
Confidence            79999997 9999999999998875  3478888 775432  22222211    1   12345667789999999997

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.84  E-value=0.00035  Score=62.07  Aligned_cols=159  Identities=19%  Similarity=0.118  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .++|.|+|++|++|..++..|+.+|+  +|++++++...  ....++........+..    +....++++.+       
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  99999987532  11222221100011111    11111222223       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|+++|.....+    .+   -.+.+..|+.....+++.+.+.   ...+.++++|.....            .+
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~------------~~  152 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAAS------------NT  152 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhc------------CC
Confidence            26899999998532111    11   1233455666666665554432   234566666542210            01


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++.....+.+.+++.++.  ..+++.++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~~--~~i~v~~i~  188 (276)
T PRK05875        153 HRWFGAYGVTKSAVDHLMKLAADELGP--SWVRVNSIR  188 (276)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcc--cCeEEEEEe
Confidence            232334556655556677777877653  445555554

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.83  E-value=0.00057  Score=60.44  Aligned_cols=147  Identities=15%  Similarity=0.085  Sum_probs=83.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeee-eccCCH---HHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGF-LGQQQL---EDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i-~~t~d~---~~a-------l  112 (270)
                      .+++.|+|++|++|.+++..|+.+|.  +|++++++....  ...++....  ..+..+ ..-++.   +++       +
T Consensus        10 ~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (263)
T PRK07814         10 DQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF   85 (263)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  999999975321  122222110  111111 011122   112       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhH----hCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|+||+++|......   .+   ..+.+..|+.....+.+.+.+    ....+.++++|.-...            .+
T Consensus        86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~  153 (263)
T PRK07814         86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGR------------LA  153 (263)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcccccc------------CC
Confidence            46899999998532111   11   223456666666666665543    2445666666643221            02


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .+..-.++.++.....+.+.++..+.
T Consensus       154 ~~~~~~Y~~sK~a~~~~~~~~~~e~~  179 (263)
T PRK07814        154 GRGFAAYGTAKAALAHYTRLAALDLC  179 (263)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHC
Confidence            33344566655444567777777764

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.82  E-value=0.00033  Score=61.06  Aligned_cols=146  Identities=16%  Similarity=0.119  Sum_probs=77.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcce-e-eeeccCCHHHHh-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVV-R-GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~-~-~i~~t~d~~~al-------~~  114 (270)
                      .++++|+||+|.+|..++..|+++|.  +|++++++....  ...++. ....... . .+....++++++       .+
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~   81 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARWGR   81 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            34899999999999999999999998  999999875322  112221 1000000 0 011111222222       37


Q ss_pred             CCEEEEcCCCCCCC---CCch---hhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|+||+++|.....   ..+.   ...+..|......+.+.    +++. ....++++|.....            .+.+
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS~~~~------------~~~~  148 (252)
T PRK06138         82 LDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIVNTASQLAL------------AGGR  148 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-CCeEEEEECChhhc------------cCCC
Confidence            89999999864211   1111   22355666555444444    4433 33455555532210            0233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHh
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      ..-.++.++.....+.+.+++.+
T Consensus       149 ~~~~Y~~sK~a~~~~~~~l~~~~  171 (252)
T PRK06138        149 GRAAYVASKGAIASLTRAMALDH  171 (252)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHH
Confidence            33345555444445666677766

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.82  E-value=0.00037  Score=60.37  Aligned_cols=146  Identities=17%  Similarity=0.227  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee--eeeccCCHHH-------HhCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR--GFLGQQQLED-------ALTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~--~i~~t~d~~~-------al~~  114 (270)
                      .+++.|+||+|++|..++..|+++|.  .|++.+++.....  ..++..   .....  .+....++++       .+..
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELGE---RVKIFPANLSDRDEVKALGQKAEADLEG   80 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC---ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999998  8888887643211  111110   00000  0111111222       2346


Q ss_pred             CCEEEEcCCCCCCC---C---CchhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          115 MDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       115 ADvVIi~ag~~~~~---g---~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      .|+||+++|.....   .   .+....+..|+.....+++.+.+.   .+...++++|.....            .+.|.
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~  148 (245)
T PRK12936         81 VDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGV------------TGNPG  148 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhC------------cCCCC
Confidence            89999999864321   0   112234566766655555554322   234566666644321            02233


Q ss_pred             CCeeeechhhHHHHHHHHHHHhC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .-.++.++.....+-+.+++.+.
T Consensus       149 ~~~Y~~sk~a~~~~~~~la~~~~  171 (245)
T PRK12936        149 QANYCASKAGMIGFSKSLAQEIA  171 (245)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhh
Confidence            33455555444456666666653

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.82  E-value=0.00048  Score=61.13  Aligned_cols=148  Identities=15%  Similarity=0.090  Sum_probs=81.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee--eeeccCCHHHH-------hCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~--~i~~t~d~~~a-------l~~A  115 (270)
                      .+|.|+||+|.+|..++..|+..|.  +|+++|++....  ...++..........  .+....+++++       +...
T Consensus        10 k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i   87 (264)
T PRK07576         10 KNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI   87 (264)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999998  899999875321  112222111000000  01111122222       2357


Q ss_pred             CEEEEcCCCCCCC---CCch---hhhHHhhHHHHHHHHHHHhHh--CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          116 DIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      |++|.++|.....   ..+.   ...+..|+.....+.+.+.+.  .+++.|+++|.....            .+.|..-
T Consensus        88 D~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~------------~~~~~~~  155 (264)
T PRK07576         88 DVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAF------------VPMPMQA  155 (264)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhc------------cCCCCcc
Confidence            9999998753211   1111   233556776666666655432  134677777654331            0233333


Q ss_pred             eeeechhhHHHHHHHHHHHhC
Q 024248          188 LLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~  208 (270)
                      .++.++.....+-+.++..+.
T Consensus       156 ~Y~asK~a~~~l~~~la~e~~  176 (264)
T PRK07576        156 HVCAAKAGVDMLTRTLALEWG  176 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            455554444556666777664

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.81  E-value=4.9e-05  Score=60.97  Aligned_cols=97  Identities=20%  Similarity=0.237  Sum_probs=53.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +...+||+|||+ |.||.+++..|...|+  +|..+-.... .....+....  ...    ...++++.+++||++|+++
T Consensus         7 ~~~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs~-~sa~~a~~~~--~~~----~~~~~~~~~~~aDlv~iav   76 (127)
T PF10727_consen    7 QAARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRSP-ASAERAAAFI--GAG----AILDLEEILRDADLVFIAV   76 (127)
T ss_dssp             -----EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCHH--HHHHHHC----TT---------TTGGGCC-SEEEE-S
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCc-cccccccccc--ccc----cccccccccccCCEEEEEe
Confidence            455789999998 9999999999999998  8777644321 1112222210  111    1124567789999999996


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNP  165 (270)
                      .     +           +.+.++++.+..+   -|+.+|+-.|..
T Consensus        77 p-----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa  106 (127)
T PF10727_consen   77 P-----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGA  106 (127)
T ss_dssp             ------C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred             c-----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCC
Confidence            1     1           1246677777765   255566666643

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.81  E-value=0.00049  Score=59.86  Aligned_cols=148  Identities=16%  Similarity=0.139  Sum_probs=78.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee--eeccCCHHHHh-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG--FLGQQQLEDAL-------TG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~--i~~t~d~~~al-------~~  114 (270)
                      .++|.|+||+|++|+.++..|++.|.  +|+++|++....  ...++...........  +....++++++       ..
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999998  999999875322  1122222111110000  11111122222       36


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      .|+||+++|......   .+.   ...+..|+.....+.+.+.+.   .+...++++|.....            .+.+.
T Consensus        81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~------------~~~~~  148 (250)
T TIGR03206        81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAAR------------VGSSG  148 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhc------------cCCCC
Confidence            899999997532111   111   223567776666665555432   233455555532110            02233


Q ss_pred             CCeeeechhhHHHHHHHHHHHh
Q 024248          186 KRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .-.++.++..-..+.+.+++.+
T Consensus       149 ~~~Y~~sK~a~~~~~~~la~~~  170 (250)
T TIGR03206       149 EAVYAACKGGLVAFSKTMAREH  170 (250)
T ss_pred             CchHHHHHHHHHHHHHHHHHHH
Confidence            3335554433334566666665

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07577 short chain dehydrogenase; Provisional

Probab=97.81  E-value=0.00029  Score=60.79  Aligned_cols=36  Identities=22%  Similarity=0.128  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .++|.|+|++|.+|..++..|+.+|.  +|++++++..
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~~   38 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSAI   38 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence            35899999999999999999999998  9999998753

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.81  E-value=0.00044  Score=60.95  Aligned_cols=155  Identities=17%  Similarity=0.163  Sum_probs=81.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee-eeeccCCHHHH-------hCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR-GFLGQQQLEDA-------LTGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~AD  116 (270)
                      |++.|+|++|.+|..++..|+++|.  +|++.++++...  ...++.+......+. .+....++++.       +...|
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            6899999999999999999999998  999999875321  122332211000000 01111112222       34689


Q ss_pred             EEEEcCCCCCC-C----CCchhh---hHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          117 IVIIPAGVPRK-P----GMTRDD---LFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       117 vVIi~ag~~~~-~----g~~r~~---~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      ++|.++|.... +    ..+..+   .+..|+.    ..+.+++.+.+....+.|+++|.....            ...|
T Consensus        79 ~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~------------~~~~  146 (259)
T PRK08340         79 ALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVK------------EPMP  146 (259)
T ss_pred             EEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccC------------CCCC
Confidence            99999986421 1    111112   1223332    234445555432345667666643221            0123


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceE
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~  217 (270)
                      ..-.++.++-.-..+-+.+|+.++  +..|++.
T Consensus       147 ~~~~y~~sKaa~~~~~~~la~e~~--~~gI~v~  177 (259)
T PRK08340        147 PLVLADVTRAGLVQLAKGVSRTYG--GKGIRAY  177 (259)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhC--CCCEEEE
Confidence            333344444444456677888765  3445443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.80  E-value=0.00024  Score=64.87  Aligned_cols=95  Identities=18%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||+|||. |.+|+.++..|+..|+  +|.++|++++.  ...+..... ..   .....++.+.++++|+||++...  
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~-~~---~~s~~~~~~~~~~~dvIi~~vp~--   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT-TG---VANLRELSQRLSAPRVVWVMVPH--   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC-cc---cCCHHHHHhhcCCCCEEEEEcCc--
Confidence            69999997 9999999999999998  99999997542  222222110 00   00011333456789999998521  


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCC
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv  166 (270)
                                    ..+.++++.+.... ++.+++..||..
T Consensus        70 --------------~~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 --------------GIVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             --------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          12344444554443 567777777654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK07680 late competence protein ComER; Validated

Probab=97.80  E-value=0.00023  Score=63.99  Aligned_cols=97  Identities=16%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCc--cEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~--~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+|||+ |.+|+.++..|...+..  .+|.++|++....  ..+.+.  ...+   ..+.+.++++.++|+||++.. 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~--~~~~~~--~~g~---~~~~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKA--YHIKER--YPGI---HVAKTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHH--HHHHHH--cCCe---EEECCHHHHHHhCCEEEEecC-
Confidence            68999997 99999999999888742  3799999875322  222221  1111   123466677899999999861 


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      +               ..+.++++.+..+. ++.+|+.+++++.
T Consensus        72 p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            1               11244555555433 5677777888775

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.80  E-value=0.00075  Score=58.53  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------T  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------~  113 (270)
                      +++.|+|++|.+|..++..|+.+|.  +|++++++....  ...++...  ...+..    +....++++++       .
T Consensus         8 ~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (239)
T PRK07666          8 KNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNELG   83 (239)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  999999875321  11223211  111111    11111222333       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCC
Q 024248          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNP  165 (270)
                      +.|+||+++|......   .+.   ...+..|+.....+.+.+..+   .....++++|..
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~  144 (239)
T PRK07666         84 SIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISST  144 (239)
T ss_pred             CccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcch
Confidence            7999999998653211   111   234566666555555555432   223455555543

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.79  E-value=0.00079  Score=59.25  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeee-ccCC---HHHHh-------C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL-GQQQ---LEDAL-------T  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~-~t~d---~~~al-------~  113 (270)
                      ++|.|+||+|++|..++..|+.+|.  +|+++|++.....  ..++....  ..+..+. .-.|   +++++       .
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  9999998753221  12232211  1111110 1112   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---C-c---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCC
Q 024248          114 GMDIVIIPAGVPRKPG---M-T---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNP  165 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~-~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNP  165 (270)
                      +.|+||+++|......   . +   -.+.+..|+.....+++.+.++.  ..+.++++|..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~  138 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL  138 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            6899999998643211   1 1   12335677777777766665432  23556656543

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00029  Score=62.74  Aligned_cols=35  Identities=11%  Similarity=-0.059  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ++|.|+||+|++|.+++..|+++|.  +|++++++..
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~   38 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTA   38 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            4799999999999999999999998  9999998753

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00072  Score=59.00  Aligned_cols=145  Identities=17%  Similarity=0.128  Sum_probs=82.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-ee-eeeccCCHHHHhCC----CCEEEEc
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQLEDALTG----MDIVIIP  121 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~~-~i~~t~d~~~al~~----ADvVIi~  121 (270)
                      ++.|+||+|.+|..++..|+.+|.  +|+++|+++...  .++........ +. .+....+++++++.    .|.+|+.
T Consensus         3 ~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~   78 (240)
T PRK06101          3 AVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFN   78 (240)
T ss_pred             EEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEc
Confidence            689999999999999999999998  999999975321  11211100000 00 11111223333332    4788888


Q ss_pred             CCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechh
Q 024248          122 AGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (270)
Q Consensus       122 ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~l  194 (270)
                      +|......   .+   -.+.+..|+.....+.+.+...- ....++++|.....            .+.|..-.++.++.
T Consensus        79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~~~Y~asK~  146 (240)
T PRK06101         79 AGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE------------LALPRAEAYGASKA  146 (240)
T ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc------------cCCCCCchhhHHHH
Confidence            76432111   11   12356788887888887776542 34556655532221            12343445666665


Q ss_pred             hHHHHHHHHHHHhC
Q 024248          195 DVVRANTFVAEVLG  208 (270)
Q Consensus       195 dt~r~~~~lA~~l~  208 (270)
                      ....+.+.++..+.
T Consensus       147 a~~~~~~~l~~e~~  160 (240)
T PRK06101        147 AVAYFARTLQLDLR  160 (240)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55667777776553

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.78  E-value=0.00025  Score=64.85  Aligned_cols=70  Identities=21%  Similarity=0.171  Sum_probs=48.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+||+|||+ |.+|..++..|...|+..+|+++|+++....  .+.....  ..   ....++++++++||+||+++.
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~--~a~~~g~--~~---~~~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRA--RARELGL--GD---RVTTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHH--HHHhCCC--Cc---eecCCHHHHhcCCCEEEECCC
Confidence            358999997 9999999999998886458999999753211  1111100  00   112356678899999999974

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00067  Score=59.38  Aligned_cols=158  Identities=16%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcce-e-eeeccCCHHHHhC-------C
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVV-R-GFLGQQQLEDALT-------G  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~-~-~i~~t~d~~~al~-------~  114 (270)
                      ..+|+|+||+|.+|..++..|+..|.  +|++++++....  ...++......... . .+....++++.++       .
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            34899999999999999999999998  999999975321  12223221110000 0 0111112223332       4


Q ss_pred             CCEEEEcCCCCCCCC----Cch---hhhHHhhHHHHHHHHH----HHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          115 MDIVIIPAGVPRKPG----MTR---DDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       115 ADvVIi~ag~~~~~g----~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .|+||+++|.....+    .+.   .+.+..|+.....+++    .+.+. ..+.++++|.....            .+.
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS~~~~------------~~~  151 (253)
T PRK06172         85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTASVAGL------------GAA  151 (253)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhc------------cCC
Confidence            599999998642211    111   2335566655544433    33322 23556666543221            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +..-.++.++-....+-+.+++.+.  +..+++.++.
T Consensus       152 ~~~~~Y~~sKaa~~~~~~~la~e~~--~~~i~v~~i~  186 (253)
T PRK06172        152 PKMSIYAASKHAVIGLTKSAAIEYA--KKGIRVNAVC  186 (253)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            3333455554444567777787774  3456554443

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.78  E-value=0.00076  Score=58.78  Aligned_cols=149  Identities=16%  Similarity=0.153  Sum_probs=79.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-ee-eeeccCCHH-------HHhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQLE-------DALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~~-~i~~t~d~~-------~al~~AD  116 (270)
                      .++|.|+||+|.+|.+++..|+++|.  +|++++++........+........ +. .+....+++       +.....|
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         5 GKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            35899999999999999999999998  9999998643221112221110000 00 011111121       1234689


Q ss_pred             EEEEcCCCCCCCC---C---chhhhHHhhHHHHHHHHHHHhH----hCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ++|+++|......   .   .-.+.+..|+.....+++.+.+    ....+.++++|.-...            .+.+..
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~~~~~  150 (248)
T TIGR01832        83 ILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSF------------QGGIRV  150 (248)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhc------------cCCCCC
Confidence            9999998642111   1   1223456676655555555543    2224566665532110            012222


Q ss_pred             CeeeechhhHHHHHHHHHHHhC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      -.++.++..-..+.+.+++.+.
T Consensus       151 ~~Y~~sKaa~~~~~~~la~e~~  172 (248)
T TIGR01832       151 PSYTASKHGVAGLTKLLANEWA  172 (248)
T ss_pred             chhHHHHHHHHHHHHHHHHHhC
Confidence            3355544444456777888874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08219 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00054  Score=58.63  Aligned_cols=74  Identities=19%  Similarity=0.226  Sum_probs=46.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcce--eeeeccCCHHHHhC---CCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV--RGFLGQQQLEDALT---GMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~--~~i~~t~d~~~al~---~ADvVIi~  121 (270)
                      +++.|+||+|++|..++..|+++ +  +|++++++...  ..++.+......+  -.+....+++++++   +.|+||++
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   78 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHN   78 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            58999999999999999999888 6  89999987432  1112111000000  00111223444444   58999999


Q ss_pred             CCCC
Q 024248          122 AGVP  125 (270)
Q Consensus       122 ag~~  125 (270)
                      +|..
T Consensus        79 ag~~   82 (227)
T PRK08219         79 AGVA   82 (227)
T ss_pred             CCcC
Confidence            9864

>TIGR01746 Thioester-redct thioester reductase domain

Probab=97.77  E-value=0.00022  Score=65.28  Aligned_cols=114  Identities=13%  Similarity=0.082  Sum_probs=70.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH----HH-hhcc-----ccC-cceeeeec----------cC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----AD-ISHM-----DTN-AVVRGFLG----------QQ  106 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~----~d-l~~~-----~~~-~~~~~i~~----------t~  106 (270)
                      +|.|+||+|++|++++..|+.+|...+|+++.+.......    .+ +...     ... ..+..+.+          ..
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            5889999999999999999998853489999886542111    01 1100     000 11221111          11


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       107 d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ++.+..+++|+||++++.... ..+..++...|+.....+++.+.+..... ++++|
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~-~v~iS  135 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKP-LHYVS  135 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCce-EEEEc
Confidence            244556889999999875421 12334556789999999999888765443 44444

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.77  E-value=0.0013  Score=57.32  Aligned_cols=115  Identities=19%  Similarity=0.082  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh----CCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL----TGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al----~~AD  116 (270)
                      ++|.|+||+|++|..++..|+++|+  +|+++|+++...  ...++.... ...+..    +....++++.+    +..|
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d   78 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD   78 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence            4799999999999999999999998  999999976321  122222110 111111    11111222222    3469


Q ss_pred             EEEEcCCCCCCC---CCch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecC
Q 024248          117 IVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (270)
Q Consensus       117 vVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sN  164 (270)
                      +||+++|.....   +.+.   .+.+..|+.....+.+.+..+   ...+.++++|.
T Consensus        79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  135 (243)
T PRK07102         79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS  135 (243)
T ss_pred             EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            999998753211   1122   234567777666666666543   23456666653

>PRK06128 oxidoreductase; Provisional

Probab=97.76  E-value=0.0029  Score=57.25  Aligned_cols=148  Identities=20%  Similarity=0.175  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh----HHHHhhccccCcc-ee-eeeccCCHHH-------Hh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAV-VR-GFLGQQQLED-------AL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~----~~~dl~~~~~~~~-~~-~i~~t~d~~~-------al  112 (270)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++....    ....+........ +. .+....+.++       .+
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  898887653211    1112221110000 00 0111111222       23


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      ...|++|+++|......    .+   ....+..|+.....+++.+.++. ..+.|+++|.....            .+.+
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~------------~~~~  200 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSY------------QPSP  200 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcccc------------CCCC
Confidence            46899999998642111    11   23456788887777888776653 34566666543221            0122


Q ss_pred             CCCeeeechhhHHHHHHHHHHHh
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      ..-.++.++.....+.+.+++.+
T Consensus       201 ~~~~Y~asK~a~~~~~~~la~el  223 (300)
T PRK06128        201 TLLDYASTKAAIVAFTKALAKQV  223 (300)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHh
Confidence            22225555554556777777776

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.76  E-value=0.00079  Score=58.86  Aligned_cols=147  Identities=18%  Similarity=0.158  Sum_probs=78.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcce-e-eeeccCCHHH-------HhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVV-R-GFLGQQQLED-------ALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~-~-~i~~t~d~~~-------al~~  114 (270)
                      ++|.|+|++|++|+.++..|+++|.  +|+++|+.....   ...++......... . .+....++.+       .+..
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            4699999999999999999999998  999999764321   11122211110011 0 0111111211       1246


Q ss_pred             CCEEEEcCCCCCCC-C----Cc---hhhhHHhhHHHHHHHHHHHhHh----CC-----CCEEEEecCCCCCcHHHHHHHH
Q 024248          115 MDIVIIPAGVPRKP-G----MT---RDDLFNINAGIVKTLCEGIAKC----CP-----KAIVNLISNPVNSTVPIAAEVF  177 (270)
Q Consensus       115 ADvVIi~ag~~~~~-g----~~---r~~~~~~N~~i~~~i~~~i~~~----~p-----~a~viv~sNPv~~~~~i~t~~~  177 (270)
                      .|+||+++|..... +    .+   ..+.+..|+.....+.+.+.+.    ..     ...++++|.....         
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~---------  151 (256)
T PRK12745         81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAI---------  151 (256)
T ss_pred             CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhc---------
Confidence            89999999864211 1    11   1234566766665555554332    21     2345555532220         


Q ss_pred             HHhCCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       178 ~~~sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                         .+.+..-.++.++.....+.+.+++.+
T Consensus       152 ---~~~~~~~~Y~~sK~a~~~~~~~l~~~~  178 (256)
T PRK12745        152 ---MVSPNRGEYCISKAGLSMAAQLFAARL  178 (256)
T ss_pred             ---cCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence               023333456665544455666777664

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.76  E-value=0.00056  Score=60.41  Aligned_cols=155  Identities=18%  Similarity=0.137  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHH-------hCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDA-------LTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l~~  114 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++....  .++.... ...+..    +....+.+++       +..
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSAAGL--QELEAAH-GDAVVGVEGDVRSLDDHKEAVARCVAAFGK   79 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhhc-CCceEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            35899999999999999999999998  999999875321  1121110 001110    1111112222       346


Q ss_pred             CCEEEEcCCCCCC--C--CCc-------hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          115 MDIVIIPAGVPRK--P--GMT-------RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       115 ADvVIi~ag~~~~--~--g~~-------r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      .|++|.++|....  +  ..+       ....+..|+.....+++.+.+.-  ..+.+++++.-...           . 
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~-----------~-  147 (262)
T TIGR03325        80 IDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGF-----------Y-  147 (262)
T ss_pred             CCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEecccee-----------c-
Confidence            7999999986321  1  111       12345556555555555544321  22434444321110           0 


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.+..-.++.++.....+-+.+|..++-  . +++..+-
T Consensus       148 ~~~~~~~Y~~sKaa~~~l~~~la~e~~~--~-irvn~i~  183 (262)
T TIGR03325       148 PNGGGPLYTAAKHAVVGLVKELAFELAP--Y-VRVNGVA  183 (262)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHhhcc--C-eEEEEEe
Confidence            1222234566555555677888888763  3 5544443

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.75  E-value=0.00024  Score=64.37  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=48.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .|||+|||. |.+|..++..++..|+  +|.++|++....  ..+....       ...++++++++++||+||++.
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g-------~~~~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG-------AETASTAKAVAEQCDVIITML   66 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC-------CeecCCHHHHHhcCCEEEEeC
Confidence            368999997 9999999999999998  999999875322  1122111       112346778889999999986

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.75  E-value=0.00061  Score=59.48  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +|.|+||+|.+|..++..|+++|.  +|+++++++
T Consensus         3 ~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          3 YVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             EEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            699999999999999999999998  999999875

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.75  E-value=0.00032  Score=61.42  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHH-------HhCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLED-------ALTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~-------al~~  114 (270)
                      .++|.|+||+|+||.+++..|+.+|.  +|+++|+++...  ...++........ +. .+....+++.       .+..
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999998  999999875321  1122221110000 00 0111111221       2346


Q ss_pred             CCEEEEcCCCCCC--C--CCc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecC
Q 024248          115 MDIVIIPAGVPRK--P--GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (270)
Q Consensus       115 ADvVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sN  164 (270)
                      .|+||+++|....  +  ..+   ....+..|+.....+++.+.++.  ....++++|.
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         83 VDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             ccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            8999999986321  1  111   12345667766666666665432  1245666653

>PRK08264 short chain dehydrogenase; Validated

Probab=97.75  E-value=0.00067  Score=58.74  Aligned_cols=146  Identities=11%  Similarity=0.004  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh---CCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL---TGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al---~~ADvVIi~a  122 (270)
                      .++|.|+||+|.+|..++..|+.+|. .+|++++++......   ...........+....++++.+   ...|+||+++
T Consensus         6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~a   81 (238)
T PRK08264          6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNA   81 (238)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECC
Confidence            35799999999999999999998885 378999986532111   0000000000011112233333   3589999999


Q ss_pred             CCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          123 GVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       123 g~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      |.....+    .+   ..+.+..|+.....+.+.+.+.   ...+.++++|.....            .+.+....++.+
T Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~------------~~~~~~~~y~~s  149 (238)
T PRK08264         82 GIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSW------------VNFPNLGTYSAS  149 (238)
T ss_pred             CcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhc------------cCCCCchHhHHH
Confidence            8732111    11   1233456666666666665432   234566666643321            123444456666


Q ss_pred             hhhHHHHHHHHHHHh
Q 024248          193 MLDVVRANTFVAEVL  207 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l  207 (270)
                      +.....+...++..+
T Consensus       150 K~a~~~~~~~l~~~~  164 (238)
T PRK08264        150 KAAAWSLTQALRAEL  164 (238)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            555556666677765

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.75  E-value=0.00031  Score=62.67  Aligned_cols=96  Identities=13%  Similarity=0.142  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCc-cEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~-~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      .|||+|||+ |.+|..++..+...+.. .+|.++|++++..  ..+.+..   .+   ..+++.++.+.++|+||++.. 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~--~~~~~~~---g~---~~~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKR--AALAEEY---GV---RAATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHHH--HHHHHhc---CC---eecCChHHHHhcCCEEEEEcC-
Confidence            469999998 99999999999887721 2899999875322  1222210   01   123456677889999999862 


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                                     ...+.++++.+..+. +..|+.++|.+.
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           122345555555443 456666667554

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.73  E-value=0.00054  Score=59.53  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=79.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee--eeeccCCHHHH-------hCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDA-------LTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~--~i~~t~d~~~a-------l~~  114 (270)
                      .++|.|+|++|.+|..++..|+++|+  +|+++++++...  ...++..........  .+....++++.       +.+
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999998  999998875321  122332211000000  01111112222       257


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      .|+||+++|......   .+.   ...+..|+.....+++.+.++   ...+.++++|.....            .+.+.
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~  152 (250)
T PRK12939         85 LDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTAL------------WGAPK  152 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhc------------cCCCC
Confidence            899999998643211   111   223456666666666555433   224566666542210            01222


Q ss_pred             CCeeeechhhHHHHHHHHHHHhC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .-.++.++....++.+.+++.++
T Consensus       153 ~~~y~~sK~~~~~~~~~l~~~~~  175 (250)
T PRK12939        153 LGAYVASKGAVIGMTRSLARELG  175 (250)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHh
Confidence            22344444444456666666654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.73  E-value=0.00056  Score=59.95  Aligned_cols=118  Identities=14%  Similarity=0.105  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHHh-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~al-------~~  114 (270)
                      .++|.|+||+|.+|..++..|+.+|.  +|++++++....  ...++........ +. .+....++++++       ..
T Consensus        11 ~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124         11 GQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            45899999999999999999999998  999999975321  1222321110000 00 011111222222       34


Q ss_pred             CCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCC
Q 024248          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (270)
Q Consensus       115 ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNP  165 (270)
                      .|+||.++|.....   ..+   -...+..|+.....+++.+.+.   ...+.++++|..
T Consensus        89 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~  148 (256)
T PRK06124         89 LDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSI  148 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeec
Confidence            69999999864211   111   1234566766555555444332   234566666654

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.73  E-value=0.00031  Score=60.46  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHH-------hCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDA-------LTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~a-------l~~AD  116 (270)
                      .++|+|+|++|.+|..++..|+++|.  +|++++++....  ...++...........+....+++++       +...|
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            45899999999999999999999998  899999975321  11222211100000001111122222       33689


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sN  164 (270)
                      +||+++|......   .+   -.+.+..|......+++.+.+.   .+...++++|.
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (239)
T PRK12828         85 ALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA  141 (239)
T ss_pred             EEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            9999987542111   11   1223456666555555555432   34456666553

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.73  E-value=0.0019  Score=56.40  Aligned_cols=149  Identities=17%  Similarity=0.195  Sum_probs=79.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-eCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHHh--------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDAL--------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~al--------  112 (270)
                      .++|.|+|++|++|+.++..|+++|.  +|+++ +++....  ...++........ +. .+....++++++        
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~   83 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ   83 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence            35899999999999999999999998  88775 4433211  1112221100000 00 011111222222        


Q ss_pred             -----CCCCEEEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          113 -----TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       113 -----~~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                           .+.|+||+++|......   .+.   ...+..|+.....+++.+.++. ..+.++++|.....            
T Consensus        84 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~------------  151 (254)
T PRK12746         84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVR------------  151 (254)
T ss_pred             cccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhc------------
Confidence                 25899999998643211   111   2345577777777777776543 23456655532210            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .+.+..-.++.++.....+.+.+++.++
T Consensus       152 ~~~~~~~~Y~~sK~a~~~~~~~~~~~~~  179 (254)
T PRK12746        152 LGFTGSIAYGLSKGALNTMTLPLAKHLG  179 (254)
T ss_pred             CCCCCCcchHhhHHHHHHHHHHHHHHHh
Confidence            0223333456655555556666777654

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.72  E-value=0.00079  Score=58.53  Aligned_cols=145  Identities=14%  Similarity=0.063  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeee-eccCCH----------HHHhCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF-LGQQQL----------EDALTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i-~~t~d~----------~~al~~  114 (270)
                      .++|.|+||+|.+|..++..|+.+|.  +|+++++++....  ++.+.. ...+..+ ....|.          ++.+..
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLE--AARAEL-GESALVIRADAGDVAAQKALAQALAEAFGR   80 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHH--HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            35899999999999999999999998  9999998743111  111100 0000000 001121          122346


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      .|+||+++|......   .+   ....+..|+.....+.+.+.++- ....+++++.....            .+.|..-
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~------------~~~~~~~  148 (249)
T PRK06500         81 LDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAH------------IGMPNSS  148 (249)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhc------------cCCCCcc
Confidence            899999998643111   11   22356778887777887776532 22344444432210            1233334


Q ss_pred             eeeechhhHHHHHHHHHHHh
Q 024248          188 LLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l  207 (270)
                      .++.++.....+.+.+++.+
T Consensus       149 ~Y~~sK~a~~~~~~~la~e~  168 (249)
T PRK06500        149 VYAASKAALLSLAKTLSGEL  168 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            45555544445666666665

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.72  E-value=0.00023  Score=64.47  Aligned_cols=64  Identities=14%  Similarity=0.268  Sum_probs=47.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ||+|||. |.+|+.++..|+..|+  +|+++|++...  ...+.....       ...++.++++++||+||++..
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~-------~~~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA-------VTAETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC-------cccCCHHHHHhcCCEEEEecC
Confidence            5999997 9999999999999998  99999987532  222222211       113466788999999999863

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.71  E-value=0.0021  Score=56.08  Aligned_cols=160  Identities=16%  Similarity=0.159  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhcccc-Ccceeeeecc----C-------CHHH
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDT-NAVVRGFLGQ----Q-------QLED  110 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~-~~~~~~i~~t----~-------d~~~  110 (270)
                      +.++|.|+|++|++|..++..|++.|.  +|+++|++...  ....++.+... ...+.....+    .       .+.+
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999998  99999997532  12223332211 0111000000    0       1223


Q ss_pred             HhCCCCEEEEcCCCCCCC----CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          111 ALTGMDIVIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                      .+...|+||+++|.....    ..+   ....+..|+.....+.+.+..+   .+...|+++|.....            
T Consensus        89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~------------  156 (247)
T PRK08945         89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGR------------  156 (247)
T ss_pred             HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhc------------
Confidence            345689999998753211    111   2234567776655555554322   344566666543221            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .+.+....++.++.....+...+++.+.-  ..+.+.++.
T Consensus       157 ~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~--~~i~~~~v~  194 (247)
T PRK08945        157 QGRANWGAYAVSKFATEGMMQVLADEYQG--TNLRVNCIN  194 (247)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHhcc--cCEEEEEEe
Confidence            12233334555544444455666666543  345544444

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.71  E-value=0.00038  Score=63.22  Aligned_cols=66  Identities=18%  Similarity=0.240  Sum_probs=50.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +||++||. |.+|+.+|..|...|+  +|+.+|+++++. ...+.....       ....++.+++++||+||.+..
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga-------~~a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA-------TVAASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC-------cccCCHHHHHHhCCEEEEecC
Confidence            58999997 9999999999999999  999999986543 222222111       123356789999999999864

>PRK07578 short chain dehydrogenase; Provisional

Probab=97.71  E-value=0.00067  Score=57.36  Aligned_cols=144  Identities=18%  Similarity=0.117  Sum_probs=78.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |++.|+|++|.+|..++..|+++ .  +|++++++.. ....|+.+.+.   +.      ..-+.+...|++|.++|...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~~---~~------~~~~~~~~id~lv~~ag~~~   67 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPAS---IR------ALFEKVGKVDAVVSAAGKVH   67 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChHH---HH------HHHHhcCCCCEEEECCCCCC
Confidence            68999999999999999999887 5  8999988643 11223333210   00      01122347899999998642


Q ss_pred             CC---CCch---hhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHH
Q 024248          127 KP---GMTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRA  199 (270)
Q Consensus       127 ~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~  199 (270)
                      ..   +.+.   ...+..|+.....+.+.+.++- +.+.++++|.-...            .+.|..-.++.++-....+
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~------------~~~~~~~~Y~~sK~a~~~~  135 (199)
T PRK07578         68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD------------EPIPGGASAATVNGALEGF  135 (199)
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC------------CCCCCchHHHHHHHHHHHH
Confidence            11   1111   2234556655555665554432 34556555532210            0222222344443333456


Q ss_pred             HHHHHHHhCCCCCccceEE
Q 024248          200 NTFVAEVLGLDPREVDVPV  218 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V  218 (270)
                      -+.++.++   +..+++..
T Consensus       136 ~~~la~e~---~~gi~v~~  151 (199)
T PRK07578        136 VKAAALEL---PRGIRINV  151 (199)
T ss_pred             HHHHHHHc---cCCeEEEE
Confidence            66777776   33454433

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.71  E-value=0.00037  Score=65.28  Aligned_cols=68  Identities=19%  Similarity=0.237  Sum_probs=47.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +||+|||. |.+|.+++..|...|+  ++.++|.+........-...   ....  ..++++++++++||+||+++
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~---~~~~--~~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGF---GVID--ELAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcC---CCCc--ccccCHHHHhcCCCEEEEeC
Confidence            37999997 9999999999999998  88889987643221110000   0000  12346778899999999996

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.70  E-value=0.0002  Score=65.97  Aligned_cols=111  Identities=17%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHhCCCccEEEEEeCCCCh----------hH--HHH----hhccc------cCcceeeeeccC--CHHHHhC
Q 024248           58 IGQPLAMLMKINPLVSVLHLYDVVNTP----------GV--TAD----ISHMD------TNAVVRGFLGQQ--QLEDALT  113 (270)
Q Consensus        58 VGs~la~~l~~~g~~~eV~LvD~~~~~----------~~--~~d----l~~~~------~~~~~~~i~~t~--d~~~al~  113 (270)
                      +|+.+|..++..|+  +|+++|++++.          +.  ...    +....      ....+..+..++  +++++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~   78 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA   78 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence            57889999999999  99999998731          10  101    11000      001112233333  3668899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      +||+||.++              .++.++.+++...+.+.+ |++++  .||.+...   ++++.... . .++|++|+
T Consensus        79 ~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~---~~~la~~~-~-~p~r~~g~  136 (314)
T PRK08269         79 DADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFL---VTDLQRHV-A-HPERFLNA  136 (314)
T ss_pred             cCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCC---HHHHHhhc-C-CcccEEEE
Confidence            999999985              345677888888898887 45655  88877753   34443322 2 24556554

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.70  E-value=0.0021  Score=58.25  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .++|.|+||+|.+|..++..|+.+|.  +|++++++..
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~   75 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRED   75 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            35799999999999999999999998  9999999753

>PLN02256 arogenate dehydrogenase

Probab=97.69  E-value=0.00042  Score=63.57  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=48.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh-CCCCEEEE
Q 024248           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVII  120 (270)
Q Consensus        42 ~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al-~~ADvVIi  120 (270)
                      ++.+.|||+|||. |.+|..++..|...|.  +|+.+|++.....+.++  .     +   ...++.++.+ .++|+||+
T Consensus        32 ~~~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~--g-----v---~~~~~~~e~~~~~aDvVil   98 (304)
T PLN02256         32 EKSRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL--G-----V---SFFRDPDDFCEEHPDVVLL   98 (304)
T ss_pred             ccCCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc--C-----C---eeeCCHHHHhhCCCCEEEE
Confidence            4567789999997 9999999999998887  99999987532111111  1     1   1124565655 47999999


Q ss_pred             cC
Q 024248          121 PA  122 (270)
Q Consensus       121 ~a  122 (270)
                      ++
T Consensus        99 av  100 (304)
T PLN02256         99 CT  100 (304)
T ss_pred             ec
Confidence            86

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.00061  Score=61.79  Aligned_cols=159  Identities=19%  Similarity=0.136  Sum_probs=84.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      .++|.|+||+|++|..++..|+++|.  +|++++++.....  ..++........+..    +....+++++       +
T Consensus        16 ~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         16 GRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            35799999999999999999999998  9999998753221  122321100011111    1111112222       2


Q ss_pred             CCCCEEEEcCCCCCCCC----CchhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCc-HHH-HHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG----MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNST-VPI-AAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g----~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~-~~i-~t~~~~~~sg  182 (270)
                      ...|+||++||......    ......+..|+..    ++.+.+.+++. ..+.|+++|...... ... ... ......
T Consensus        94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~~~~~~-~~~~~~  171 (306)
T PRK06197         94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSSGGHRIRAAIHFDD-LQWERR  171 (306)
T ss_pred             CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECCHHHhccCCCCccc-cCcccC
Confidence            35899999998642211    1112335666655    56666666543 345666665321100 000 000 000001


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +++...++.+++....+.+.+++++.
T Consensus       172 ~~~~~~Y~~SK~a~~~~~~~la~~l~  197 (306)
T PRK06197        172 YNRVAAYGQSKLANLLFTYELQRRLA  197 (306)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22233466677766777888888874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.69  E-value=0.00083  Score=57.93  Aligned_cols=116  Identities=20%  Similarity=0.278  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee--eeeccCCHHHH-------hCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR--GFLGQQQLEDA-------LTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~--~i~~t~d~~~a-------l~~  114 (270)
                      .++|+|+|++|++|..++..|+++|+  +|+++++++....  ..++..........  .+....++.++       +..
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA   82 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35899999999999999999999999  8999999754211  12222110000000  01111112222       345


Q ss_pred             CCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEec
Q 024248          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS  163 (270)
Q Consensus       115 ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~s  163 (270)
                      .|+||+++|.....   ..+   -.+.+..|+.....+++.+.++   .....++++|
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s  140 (246)
T PRK05653         83 LDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS  140 (246)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            69999998753221   111   1233556666666666665432   2224565555

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.69  E-value=0.00059  Score=59.97  Aligned_cols=70  Identities=10%  Similarity=0.170  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~--~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.|||+|||+ |.+|..++..++..+.  ..+++++++... ....++.+..   .+   ..++++++.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~---~~~~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NV---STTTDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---Cc---EEeCChHHHHhcCCEEEEec
Confidence            3579999997 9999999998887753  334777776421 1122232210   11   12356778889999999986

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.0014  Score=59.18  Aligned_cols=115  Identities=14%  Similarity=0.122  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCcceee----eeccCCHHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRG----FLGQQQLEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~~----i~~t~d~~~al------  112 (270)
                      .++|.|+||+|.+|..++..|++.|.  +|++++++...   .....+...  ...+..    +....++++.+      
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  99999987531   111122111  011110    11111122222      


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecC
Q 024248          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN  164 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sN  164 (270)
                       ...|+||+++|......    .+   -...+..|+.....+++.+.+. .+.+.+|++|.
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence             35799999998632111    11   1345677888788888777654 24456666664

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.0016  Score=57.79  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhcccc-CcceeeeeccCC-------HHHHhCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDT-NAVVRGFLGQQQ-------LEDALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~-~~~~~~i~~t~d-------~~~al~~A  115 (270)
                      .++|.|+||+|.+|..++..|+.+|.  .|++.++++....  ..++..... ...   +....+       ..+...+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~~~~~~~~~~~~i   79 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGGPLD---VTDPASFAAFLDAVEADLGPI   79 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEEEcc---CCCHHHHHHHHHHHHHHcCCC
Confidence            45899999999999999999999998  8999998753211  112211100 000   111111       12223578


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHH----HHHHHhHhCCCCEEEEecCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~sNP  165 (270)
                      |++|+++|......   .+   -...+..|+.....    +.+.+.+. ..+.|+++|..
T Consensus        80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  138 (273)
T PRK07825         80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASL  138 (273)
T ss_pred             CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCc
Confidence            99999998643211   11   12345566654444    44444432 34566666643

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=97.69  E-value=0.00071  Score=58.55  Aligned_cols=155  Identities=15%  Similarity=0.120  Sum_probs=78.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee--eeeccCC---HHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR--GFLGQQQ---LEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~--~i~~t~d---~~~al~~ADvVIi~  121 (270)
                      |+|+|+||+|.||..++..|++++....|++.+++....    ....  .....  .+....+   +.+.+...|+||.+
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~~--~~~~~~~Dls~~~~~~~~~~~~~~id~li~~   74 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQHD--NVQWHALDVTDEAEIKQLSEQFTQLDWLINC   74 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cccC--ceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence            689999999999999999999885423677766654211    0000  00000  0000001   22345689999999


Q ss_pred             CCCCCCCC---------Cchh---hhHHhhHHHHHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          122 AGVPRKPG---------MTRD---DLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       122 ag~~~~~g---------~~r~---~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      +|.....+         .+..   ..+..|+.....+++.+....   ..+.++++|-....    +    . ...++..
T Consensus        75 aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~----~----~-~~~~~~~  145 (235)
T PRK09009         75 VGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGS----I----S-DNRLGGW  145 (235)
T ss_pred             CccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccc----c----c-cCCCCCc
Confidence            98753211         1111   223445444444444443322   22456656522221    0    0 0013333


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccce
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDV  216 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~  216 (270)
                      -.++.++.....|-+.++..++-....+++
T Consensus       146 ~~Y~asK~a~~~~~~~la~e~~~~~~~i~v  175 (235)
T PRK09009        146 YSYRASKAALNMFLKTLSIEWQRSLKHGVV  175 (235)
T ss_pred             chhhhhHHHHHHHHHHHHHHhhcccCCeEE
Confidence            456665554555777788776543334544

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.0011  Score=59.30  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=64.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHH-------hCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~A  115 (270)
                      +.+.|+||+|.+|..++..|+.+|.  +|++.|++....  ...++........ +. .+....++++.       +...
T Consensus         7 k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          7 RGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4699999999999999999999998  899999875321  1222321110000 00 01111122222       2357


Q ss_pred             CEEEEcCCCCCCC---CCch---hhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecC
Q 024248          116 DIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sN  164 (270)
                      |++|+.+|.....   ..+.   ...+..|+.....+.+.    +.+....+.++++|.
T Consensus        85 d~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         85 DVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            9999999864211   1111   23345666555544444    433333456666654

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.68  E-value=0.0018  Score=56.97  Aligned_cols=165  Identities=15%  Similarity=0.156  Sum_probs=87.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHH-------hC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDA-------LT  113 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~  113 (270)
                      +.++|.|+||+|.+|++++..|+.+|.  +|++++++....  ...++........ +. .+....++++.       ..
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFG   88 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            345899999999999999999999998  999999864321  1112221100000 00 01111112111       24


Q ss_pred             CCCEEEEcCCCCCCCC---C---chhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|+||+++|......   .   ...+.+..|+.....+.+.+.++    .+.+.++++|.....    .    -....+
T Consensus        89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~----~----~~~~~~  160 (259)
T PRK08213         89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGL----G----GNPPEV  160 (259)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhc----c----CCCccc
Confidence            6799999988532111   1   11234567888888888876554    233566666543221    0    000000


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      +...-++.++.....+-+.+++.++  +..+++.++..
T Consensus       161 ~~~~~Y~~sKa~~~~~~~~~a~~~~--~~gi~v~~v~P  196 (259)
T PRK08213        161 MDTIAYNTSKGAVINFTRALAAEWG--PHGIRVNAIAP  196 (259)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHhc--ccCEEEEEEec
Confidence            1112234444434456666777764  34565555553

>PLN02996 fatty acyl-CoA reductase

Probab=97.68  E-value=0.00093  Score=65.24  Aligned_cols=107  Identities=20%  Similarity=0.148  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCC--hhH--H-HHhhcccc----------------Ccceeeee
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGV--T-ADISHMDT----------------NAVVRGFL  103 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~--~~~--~-~dl~~~~~----------------~~~~~~i~  103 (270)
                      .++|.|+||+||+|++++..|+.. .-..+|+++.+...  ...  . .++...+.                ...+..+.
T Consensus        11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~   90 (491)
T PLN02996         11 NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVP   90 (491)
T ss_pred             CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEe
Confidence            458999999999999999887754 34457888887542  110  0 11111000                01122111


Q ss_pred             cc----------CC-HHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh
Q 024248          104 GQ----------QQ-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC  153 (270)
Q Consensus       104 ~t----------~d-~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~  153 (270)
                      +.          .+ +++.++++|+||++|+... ...+..+....|+....++++.+.+.
T Consensus        91 GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~  150 (491)
T PLN02996         91 GDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC  150 (491)
T ss_pred             cccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            10          11 3456789999999997643 22334456788999999999998864

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.68  E-value=0.0011  Score=57.88  Aligned_cols=147  Identities=10%  Similarity=0.006  Sum_probs=80.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee----eeeccCCHHHHhC-------C-
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR----GFLGQQQLEDALT-------G-  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~----~i~~t~d~~~al~-------~-  114 (270)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+.+... ...++.+... ..+.    .+....+++++++       . 
T Consensus         6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~~~~-~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQSED-AAEALADELG-DRAIALQADVTDREQVQAMFATATEHFGKP   81 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCCCHH-HHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999999998  88876653321 1111111000 0110    0111112222332       2 


Q ss_pred             CCEEEEcCCCCCC-------C--CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          115 MDIVIIPAGVPRK-------P--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       115 ADvVIi~ag~~~~-------~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                      .|++|+++|....       +  ..+   -.+.+..|+.....+++.+..+   ...+.+++++.....           
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~-----------  150 (253)
T PRK08642         82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ-----------  150 (253)
T ss_pred             CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc-----------
Confidence            8999999875210       0  111   1234566666555555555432   223566666643221           


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhCC
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGL  209 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~v  209 (270)
                       ...++.-.++.++.....+-+.+|+.++-
T Consensus       151 -~~~~~~~~Y~~sK~a~~~l~~~la~~~~~  179 (253)
T PRK08642        151 -NPVVPYHDYTTAKAALLGLTRNLAAELGP  179 (253)
T ss_pred             -CCCCCccchHHHHHHHHHHHHHHHHHhCc
Confidence             01222335777776667788888888754

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.0014  Score=57.76  Aligned_cols=150  Identities=18%  Similarity=0.174  Sum_probs=79.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcce-e-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVV-R-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~-~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+|++|.+|..++..|+.+|.  +|++++++... ....++......... . .+....++++.       +...
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            45899999999999999999999998  99999987531 111122211000000 0 01111112222       2357


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      |+||+++|.....   ..+   ....+..|+.....+.+.+.++   ...+.++++|.-..           .....+..
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~-----------~~~~~~~~  152 (263)
T PRK08226         84 DILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTG-----------DMVADPGE  152 (263)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHh-----------cccCCCCc
Confidence            9999999863211   111   2234566776666666655433   22345655543211           00012222


Q ss_pred             CeeeechhhHHHHHHHHHHHhC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      -.++.++.....+-+.+++.+.
T Consensus       153 ~~Y~~sK~a~~~~~~~la~~~~  174 (263)
T PRK08226        153 TAYALTKAAIVGLTKSLAVEYA  174 (263)
T ss_pred             chHHHHHHHHHHHHHHHHHHhc
Confidence            3355544444456677777764

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.68  E-value=0.00091  Score=60.11  Aligned_cols=170  Identities=16%  Similarity=0.149  Sum_probs=93.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhcccc-Cccee--eeeccCCHHH-------H
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-NAVVR--GFLGQQQLED-------A  111 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~-~~~~~--~i~~t~d~~~-------a  111 (270)
                      .+.+.++|+|||+-+|..+|..|+.+|+  +|+|+.++++  ...+.++.+... ...+.  ++..+++.+.       .
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence            3445899999999999999999999999  9999999864  233445554310 01110  1111222211       1


Q ss_pred             hCCCCEEEEcCCCCCCCC------CchhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          112 LTGMDIVIIPAGVPRKPG------MTRDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g------~~r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      ....|+.|..||......      .+-.+++.-|+-..    +.+++.+.+. -.+.||+++.-...           .+
T Consensus        82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~-~~G~IiNI~S~ag~-----------~p  149 (265)
T COG0300          82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER-GAGHIINIGSAAGL-----------IP  149 (265)
T ss_pred             CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEechhhc-----------CC
Confidence            126899999998764221      12345677776554    4455555543 34567776543221           00


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeeccc
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS  232 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S  232 (270)
                       -|..-+++.|+---.-|-..|..++  ....|++.++.. |. +.-..|.
T Consensus       150 -~p~~avY~ATKa~v~~fSeaL~~EL--~~~gV~V~~v~P-G~-~~T~f~~  195 (265)
T COG0300         150 -TPYMAVYSATKAFVLSFSEALREEL--KGTGVKVTAVCP-GP-TRTEFFD  195 (265)
T ss_pred             -CcchHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEEec-Cc-ccccccc
Confidence             1333344444322223434444444  566677766663 23 3444554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.68  E-value=0.00027  Score=66.66  Aligned_cols=53  Identities=19%  Similarity=0.372  Sum_probs=44.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .+||+|||+.|.+|..++..|...|+  +|+++|++..                      ++.++++++||+||+++
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            46899999559999999999999998  9999998420                      13457788999999996

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.68  E-value=0.0011  Score=57.55  Aligned_cols=114  Identities=19%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .++|+|+||+|++|..++..|+.+|.  +|++++++....  ...++....  ..+..    +....++++.+       
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  999999874311  112222110  11111    11111222222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhhHHhhHHHHHHHHHHHh----HhCCCCEEEEecC
Q 024248          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN  164 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~sN  164 (270)
                      ..+|+||+++|.....   ..+.   .+.+..|+.....+.+.+.    +.. ...++++|.
T Consensus        82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss  142 (251)
T PRK12826         82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS  142 (251)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence            3789999998764311   1111   2345666666666665553    322 345555553

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.68  E-value=0.0017  Score=56.09  Aligned_cols=117  Identities=25%  Similarity=0.335  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcc-ee-eeeccCCHHHH-------hC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAV-VR-GFLGQQQLEDA-------LT  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~  113 (270)
                      .++|.|+|++|++|..++..|++.|.  +|+++.++....   ...++........ +. .+....++.++       +.
T Consensus         5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (248)
T PRK05557          5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG   82 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999998  887777654321   1112221111000 00 01111112222       24


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecC
Q 024248          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN  164 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sN  164 (270)
                      +.|+||+++|......   .+.   ...+..|+.....+.+.+.++.   ....++++|.
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss  142 (248)
T PRK05557         83 GVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS  142 (248)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            6899999998643211   111   1234567776666777666542   2345555553

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.68  E-value=0.0018  Score=56.45  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=63.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHH-HhhccccCccee--eeeccC-------CHHHHhCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-DISHMDTNAVVR--GFLGQQ-------QLEDALTGMD  116 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~-dl~~~~~~~~~~--~i~~t~-------d~~~al~~AD  116 (270)
                      +|.|+|++|++|+.++..|+.+|.  +|++++++.... ... ++..........  .+....       ..++.+.+.|
T Consensus         3 ~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         3 TALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             EEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            799999999999999999999998  999999975321 111 121110000000  011111       1223356789


Q ss_pred             EEEEcCCCCCC-C--CCc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecC
Q 024248          117 IVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (270)
Q Consensus       117 vVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sN  164 (270)
                      +||++++.... +  ..+   ....+..|......+.+.+    ++.. ...++++|.
T Consensus        81 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss  137 (255)
T TIGR01963        81 ILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIAS  137 (255)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            99999876421 1  111   1233455666555555554    3332 235555553

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=97.67  E-value=0.00023  Score=63.78  Aligned_cols=97  Identities=11%  Similarity=0.127  Sum_probs=57.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh------CC-CCEEEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL------TG-MDIVII  120 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al------~~-ADvVIi  120 (270)
                      ||+|+||+|++|++++..|++.|+  +|+++.++...........    .. -.+...+++.+++      ++ +|.|++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~~~~~~----~~-~d~~d~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAGPNEKH----VK-FDWLDEDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccCCCCcc----cc-ccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence            589999999999999999999998  9999998764211000000    00 0011122455666      67 999998


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +++...    ..       .+..+.+++.+++.+-+ .|++.|
T Consensus        74 ~~~~~~----~~-------~~~~~~~i~aa~~~gv~-~~V~~S  104 (285)
T TIGR03649        74 VAPPIP----DL-------APPMIKFIDFARSKGVR-RFVLLS  104 (285)
T ss_pred             eCCCCC----Ch-------hHHHHHHHHHHHHcCCC-EEEEee
Confidence            765321    11       12335566666665433 344444

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK07023 short chain dehydrogenase; Provisional

Probab=97.67  E-value=0.00032  Score=61.12  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      |||.|+||+|.+|..++..|+++|.  +|++++++..
T Consensus         2 ~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~~   36 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSRH   36 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCcc
Confidence            5899999999999999999999998  9999998753

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.67  E-value=0.0005  Score=63.81  Aligned_cols=63  Identities=21%  Similarity=0.324  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ...++|+|||. |.+|..+|..|...|+  +|+.+|++....  .+..           ..+.++++++++||+|+++.
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~~-----------~~~~~l~ell~~aDiVil~l  206 (330)
T PRK12480        144 VKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDFL-----------TYKDSVKEAIKDADIISLHV  206 (330)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhhh-----------hccCCHHHHHhcCCEEEEeC
Confidence            45679999997 9999999999998898  999999864311  1110           12346888999999999986

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.67  E-value=0.002  Score=57.34  Aligned_cols=35  Identities=14%  Similarity=0.057  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      +.+.|+||+|++|..++..|+.+|+  +|++++++..
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~   38 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPE   38 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHH
Confidence            3689999999999999999999998  9999998753

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.67  E-value=0.00088  Score=61.11  Aligned_cols=64  Identities=16%  Similarity=0.263  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC---CCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~---ADvVIi~a  122 (270)
                      |||++||. |.+|+.++..|+..|+  +|+++|+++...  ..+.+..       .....++++.+++   +|+||++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAV--DVAGKLG-------ITARHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEe
Confidence            68999997 9999999999999998  999999975322  2222211       1123466666655   69999986

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00073  Score=58.60  Aligned_cols=146  Identities=16%  Similarity=0.115  Sum_probs=80.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHh---CCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDAL---TGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al---~~ADvVIi~  121 (270)
                      .+++.|+|++|++|..++..|+.+|+  +|++++++....  .++........+. .+....++++++   ...|+||++
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAAL--DRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            35899999999999999999999998  999999875321  1111110000000 111111223333   357999999


Q ss_pred             CCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC----CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          122 AGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC----PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       122 ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      +|......   .+   ....+..|+.....+++.+.+..    ..+.|+++|.....            .+.+..-.++.
T Consensus        85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~~~y~~  152 (245)
T PRK07060         85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAAL------------VGLPDHLAYCA  152 (245)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHc------------CCCCCCcHhHH
Confidence            98643211   11   12334567776666666665432    22566666532210            12233334555


Q ss_pred             chhhHHHHHHHHHHHh
Q 024248          192 TMLDVVRANTFVAEVL  207 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l  207 (270)
                      ++....++.+.+++.+
T Consensus       153 sK~a~~~~~~~~a~~~  168 (245)
T PRK07060        153 SKAALDAITRVLCVEL  168 (245)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555556667777765

>PLN00016 RNA-binding protein; Provisional

Probab=97.66  E-value=0.00037  Score=65.38  Aligned_cols=99  Identities=19%  Similarity=0.191  Sum_probs=61.0

Q ss_pred             CCCCeEEEE----cCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH---------HHhhccccCcceeeeec-cCCHH
Q 024248           44 SPGFKVAVL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT---------ADISHMDTNAVVRGFLG-QQQLE  109 (270)
Q Consensus        44 ~~~mKI~II----Ga~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~---------~dl~~~~~~~~~~~i~~-t~d~~  109 (270)
                      .+++||.|+    ||+|++|++++..|+..|+  +|++++++......         .++...    .+..+.+ ..|++
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~l~~~----~v~~v~~D~~d~~  123 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGKEPSQKMKKEPFSRFSELSSA----GVKTVWGDPADVK  123 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCCcchhhhccCchhhhhHhhhc----CceEEEecHHHHH
Confidence            445689999    9999999999999999999  99999987532110         111111    1111111 11233


Q ss_pred             HHh--CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          110 DAL--TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       110 ~al--~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +.+  .++|+||.+++.              +....+.+++.+++...+ .+|.+|
T Consensus       124 ~~~~~~~~d~Vi~~~~~--------------~~~~~~~ll~aa~~~gvk-r~V~~S  164 (378)
T PLN00016        124 SKVAGAGFDVVYDNNGK--------------DLDEVEPVADWAKSPGLK-QFLFCS  164 (378)
T ss_pred             hhhccCCccEEEeCCCC--------------CHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            444  479999988642              123456677777765433 455444

>PRK12742 oxidoreductase; Provisional

Probab=97.66  E-value=0.0019  Score=55.79  Aligned_cols=148  Identities=16%  Similarity=0.154  Sum_probs=79.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC---HHHH---hCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA---LTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d---~~~a---l~~ADvVI  119 (270)
                      .++|.|+||+|.||..++..|+..|.  +|++.++.... ...++.... ...... ...+|   +.+.   ....|++|
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~-~D~~~~~~~~~~~~~~~~id~li   80 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQ-TDSADRDAVIDVVRKSGALDILV   80 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEe-cCCCCHHHHHHHHHHhCCCcEEE
Confidence            35799999999999999999999998  88887654321 111111100 000000 01112   2222   23579999


Q ss_pred             EcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       120 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      +++|......   .+   ....+..|+.....++..+.+. ...+.++++|.-...          . ...+....++.+
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~----------~-~~~~~~~~Y~~s  149 (237)
T PRK12742         81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD----------R-MPVAGMAAYAAS  149 (237)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc----------c-CCCCCCcchHHh
Confidence            9998642111   11   1234556665555554444332 234566665532210          0 013344556776


Q ss_pred             hhhHHHHHHHHHHHhCC
Q 024248          193 MLDVVRANTFVAEVLGL  209 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v  209 (270)
                      +.....+.+.+++.++-
T Consensus       150 Kaa~~~~~~~la~~~~~  166 (237)
T PRK12742        150 KSALQGMARGLARDFGP  166 (237)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            65555677778887753

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=97.66  E-value=0.00026  Score=64.08  Aligned_cols=160  Identities=21%  Similarity=0.174  Sum_probs=97.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi~ag~  124 (270)
                      |||.|+|++|.+|+.+...|. .+.  +|+..|+.+     +|+.+.+            .+.+.++  .-|+||.+|..
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            789999999999999998887 555  888888753     4555442            1334444  56999999875


Q ss_pred             CCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCCcHHHHHHHHHHhCCC-CCCCeeeechhhHHHHH
Q 024248          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTY-DPKRLLGVTMLDVVRAN  200 (270)
Q Consensus       125 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~~~~i~t~~~~~~sg~-p~~kviG~t~ldt~r~~  200 (270)
                      ..-.  ..++..-+..|.....++++.+.+.  ++++|.+| -.|---.  -.. -++.+.. .|-.++|-+++..+.+-
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~--ga~lVhiSTDyVFDG~--~~~-~Y~E~D~~~P~nvYG~sKl~GE~~v  135 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEV--GARLVHISTDYVFDGE--KGG-PYKETDTPNPLNVYGRSKLAGEEAV  135 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHh--CCeEEEeecceEecCC--CCC-CCCCCCCCCChhhhhHHHHHHHHHH
Confidence            4311  1234445678999999999999876  45566554 2220000  000 0111122 35567888887665443


Q ss_pred             HHHHHHhCCCCCccc-eEEEccCCCCceeecccccc
Q 024248          201 TFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVK  235 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~-~~V~G~hg~~~~vp~~S~~~  235 (270)
                      +    ..+-+..-++ .+|+|++|++...+.+..+.
T Consensus       136 ~----~~~~~~~I~Rtswv~g~~g~nFv~tml~la~  167 (281)
T COG1091         136 R----AAGPRHLILRTSWVYGEYGNNFVKTMLRLAK  167 (281)
T ss_pred             H----HhCCCEEEEEeeeeecCCCCCHHHHHHHHhh
Confidence            3    3332222334 59999999743335555554

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.66  E-value=0.0021  Score=56.46  Aligned_cols=146  Identities=16%  Similarity=0.109  Sum_probs=78.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcc-ee-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAV-VR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+||+|++|.+++..|+.+|.  +|+++|+++... ...++........ +. .+....+.+++       +...
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            45799999999999999999999998  999999874211 1122221110000 00 11111112222       2468


Q ss_pred             CEEEEcCCCCC--CC--CCch---hhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          116 DIVIIPAGVPR--KP--GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       116 DvVIi~ag~~~--~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      |++|+++|...  .+  ..+.   ...+..|+.    ..+.+.+.+.+.. .+.|+++|.....             + +
T Consensus        86 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~-------------~-~  150 (260)
T PRK12823         86 DVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSSIATR-------------G-I  150 (260)
T ss_pred             eEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcCcccc-------------C-C
Confidence            99999997431  11  1111   122344543    3345555555432 3456655532210             0 1


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhC
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ..-.++.++.....+.+.++..+.
T Consensus       151 ~~~~Y~~sK~a~~~~~~~la~e~~  174 (260)
T PRK12823        151 NRVPYSAAKGGVNALTASLAFEYA  174 (260)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhc
Confidence            122466666555567778888773

>PRK06196 oxidoreductase; Provisional

Probab=97.65  E-value=0.0004  Score=63.36  Aligned_cols=156  Identities=17%  Similarity=0.084  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhcccc-CcceeeeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDT-NAVVRGFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~-~~~~~~i~~t~d~~~a-------l~~A  115 (270)
                      .++|+|+||+|.+|..++..|+.+|.  +|++++++.....  ..++..... ...   +....+++++       ....
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~D---l~d~~~v~~~~~~~~~~~~~i  100 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLD---LADLESVRAFAERFLDSGRRI  100 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEcc---CCCHHHHHHHHHHHHhcCCCC
Confidence            35799999999999999999999998  9999998753221  112211100 000   1111112121       2468


Q ss_pred             CEEEEcCCCCCCCC----CchhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHH-HHHHHHHhCCCCCC
Q 024248          116 DIVIIPAGVPRKPG----MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPI-AAEVFKKVGTYDPK  186 (270)
Q Consensus       116 DvVIi~ag~~~~~g----~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i-~t~~~~~~sg~p~~  186 (270)
                      |++|++||....+.    ......+..|...    ++.+.+.+.+. ..+.|+++|........+ ... ......+++.
T Consensus       101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~~~~~-~~~~~~~~~~  178 (315)
T PRK06196        101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSSAGHRRSPIRWDD-PHFTRGYDKW  178 (315)
T ss_pred             CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECCHHhccCCCCccc-cCccCCCChH
Confidence            99999998642211    1122335566555    45555555543 335666665321100000 000 0000112223


Q ss_pred             CeeeechhhHHHHHHHHHHHhC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ..++.++.....+.+.+++.+.
T Consensus       179 ~~Y~~SK~a~~~~~~~la~~~~  200 (315)
T PRK06196        179 LAYGQSKTANALFAVHLDKLGK  200 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            3456666666667777877763

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.0016  Score=56.40  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=32.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ||+.|+||+|.+|..++..|+.+|.  +|++++++..
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~~   35 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARRD   35 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            6899999999999999999999998  9999998753

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.65  E-value=0.00096  Score=58.72  Aligned_cols=157  Identities=17%  Similarity=0.215  Sum_probs=83.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-ee-eeeccCCHHHH-------hCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQLEDA-------LTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~ADv  117 (270)
                      +++.|+||+|.+|..++..|+..|.  +|++++++........+........ +. .+....++++.       +...|+
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~   86 (251)
T PRK12481          9 KVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDI   86 (251)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4789999999999999999999999  9999987643221112211100000 00 01111122222       245799


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      +|.++|......   .+   ....+..|+...    +.+.+.+.+....+.|+++|.....            .+.+..-
T Consensus        87 lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~------------~~~~~~~  154 (251)
T PRK12481         87 LINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSF------------QGGIRVP  154 (251)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhc------------CCCCCCc
Confidence            999998643211   11   223455665544    4444444433334667666543221            0122233


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .++.++..-..+-+.+|..+.  +..|++..+
T Consensus       155 ~Y~asK~a~~~l~~~la~e~~--~~girvn~v  184 (251)
T PRK12481        155 SYTASKSAVMGLTRALATELS--QYNINVNAI  184 (251)
T ss_pred             chHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            466665555567777777764  334544444

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.65  E-value=0.00076  Score=60.85  Aligned_cols=70  Identities=16%  Similarity=0.202  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~--~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.|||++||+ |.+|.+++..|+..|.  ..+|+++|++... ...++....   .+   ..+.+..+++++||+||++.
T Consensus         2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~-~~~~l~~~~---g~---~~~~~~~e~~~~aDvVilav   73 (279)
T PRK07679          2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNET-RLQELHQKY---GV---KGTHNKKELLTDANILFLAM   73 (279)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCHH-HHHHHHHhc---Cc---eEeCCHHHHHhcCCEEEEEe
Confidence            4589999997 9999999999998872  2388999885421 122332210   11   12345667789999999986

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.64  E-value=0.0015  Score=57.20  Aligned_cols=147  Identities=18%  Similarity=0.149  Sum_probs=77.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHHh-------CCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDAL-------TGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~al-------~~ADv  117 (270)
                      .++.|+||+|.+|..++..|+++|.  +|++++++....  ...++.........-.+....++..++       .+.|+
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   80 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV   80 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            3699999999999999999999998  999999875321  112221110000000011111222223       35899


Q ss_pred             EEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          118 VIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       118 VIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      ||+++|......   .+.   ...+..|......+++.+...   .....++++|.....          ...+   .-.
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~----------~~~~---~~~  147 (257)
T PRK07074         81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGM----------AALG---HPA  147 (257)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhc----------CCCC---Ccc
Confidence            999998643211   111   112345665555555555322   233556555542210          0001   123


Q ss_pred             eeechhhHHHHHHHHHHHhC
Q 024248          189 LGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~  208 (270)
                      ++.++....++.+.+++.++
T Consensus       148 y~~sK~a~~~~~~~~a~~~~  167 (257)
T PRK07074        148 YSAAKAGLIHYTKLLAVEYG  167 (257)
T ss_pred             cHHHHHHHHHHHHHHHHHHh
Confidence            55555555567777887765

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.64  E-value=0.0004  Score=56.42  Aligned_cols=116  Identities=17%  Similarity=0.218  Sum_probs=70.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHH---H--hhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---D--ISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~---d--l~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |+|+|+ |.+|..+|..|.+.|+  +|.++++.+ .....   .  +........+.......+..+....+|+||++.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789998 9999999999999999  999999865 22111   0  1111100111111112222246789999999963


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ..        +        ..++++.++.+. |++.++.+-|-.+.     -+.+.+.  +|++++++.
T Consensus        77 a~--------~--------~~~~l~~l~~~~~~~t~iv~~qNG~g~-----~~~l~~~--~~~~~v~~g  122 (151)
T PF02558_consen   77 AY--------Q--------LEQALQSLKPYLDPNTTIVSLQNGMGN-----EEVLAEY--FPRPRVLGG  122 (151)
T ss_dssp             GG--------G--------HHHHHHHHCTGEETTEEEEEESSSSSH-----HHHHHCH--STGSGEEEE
T ss_pred             cc--------c--------hHHHHHHHhhccCCCcEEEEEeCCCCc-----HHHHHHH--cCCCcEEEE
Confidence            21        1        144666677665 66678878888772     3444443  566777654

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.64  E-value=0.0012  Score=56.91  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      ++|.|+||+|.+|..++..|+++|+  +|+++.+.....   ...++....  ..+..    +....+++++       +
T Consensus         7 ~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (249)
T PRK12825          7 RVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG--RRAQAVQADVTDKAALEAAVAAAVERF   82 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCcCCHHHHHHHHHHHHHHc
Confidence            4899999999999999999999999  877766543211   111121111  11111    1111122222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEec
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS  163 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~s  163 (270)
                      .+.|+||+++|......   .+   ..+.+..|+.....+.+.+.++   .....++++|
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~S  142 (249)
T PRK12825         83 GRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNIS  142 (249)
T ss_pred             CCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            46799999998542211   11   1234566666666666665321   2234555555

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.63  E-value=0.0012  Score=57.04  Aligned_cols=117  Identities=22%  Similarity=0.297  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-eCCCChh--HHHHhhccccCcceee--eeccCCHHHHh-------C
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPG--VTADISHMDTNAVVRG--FLGQQQLEDAL-------T  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D~~~~~~--~~~dl~~~~~~~~~~~--i~~t~d~~~al-------~  113 (270)
                      .++|.|+||+|++|..++..|++.|+  +|+++ +++....  ....+........+..  +....++.+.+       .
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFG   82 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            34899999999999999999999998  88888 8865321  1112221100010000  11111122222       2


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN  164 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sN  164 (270)
                      ..|+||+++|......   .+   ....+..|......+.+.+....   ....++++|.
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS  142 (247)
T PRK05565         83 KIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISS  142 (247)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence            7899999988642111   11   12345667766555555554332   2234555553

>PRK06523 short chain dehydrogenase; Provisional

Probab=97.63  E-value=0.00045  Score=60.73  Aligned_cols=152  Identities=16%  Similarity=0.224  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-------HHHhhccccCcceeeeeccCCHHHHhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-------~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvV  118 (270)
                      .++|.|+||+|.+|..++..|++.|.  +|++++++.....       ..|+.+.+   .+..+  .....+.+...|+|
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~~~id~v   81 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDDLPEGVEFVAADLTTAE---GCAAV--ARAVLERLGGVDIL   81 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhhcCCceeEEecCCCCHH---HHHHH--HHHHHHHcCCCCEE
Confidence            45899999999999999999999998  9999998753210       01111110   00000  00122334578999


Q ss_pred             EEcCCCCCCC-C----Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC-C
Q 024248          119 IIPAGVPRKP-G----MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD-P  185 (270)
Q Consensus       119 Ii~ag~~~~~-g----~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p-~  185 (270)
                      |+++|..... +    .+   ....+..|+...    +.+++.+++.. .+.++++|.....            .+.+ .
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~------------~~~~~~  148 (260)
T PRK06523         82 VHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG-SGVIIHVTSIQRR------------LPLPES  148 (260)
T ss_pred             EECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEeccccc------------CCCCCC
Confidence            9999853211 1    11   223345565544    44455555432 3556666643321            0122 2


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .-.++.++.....+.+.++..++  +..+++.++
T Consensus       149 ~~~Y~~sK~a~~~l~~~~a~~~~--~~gi~v~~i  180 (260)
T PRK06523        149 TTAYAAAKAALSTYSKSLSKEVA--PKGVRVNTV  180 (260)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            33455555444556667777653  334544333

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=97.63  E-value=0.0011  Score=57.08  Aligned_cols=155  Identities=17%  Similarity=0.192  Sum_probs=83.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-h--hHHHHhhccccCccee--eeeccCCHHHHh-------CCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTNAVVR--GFLGQQQLEDAL-------TGMD  116 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~--~~~~dl~~~~~~~~~~--~i~~t~d~~~al-------~~AD  116 (270)
                      |.|+|++|++|..++..|+++|+  +|+++++... .  ....++.+........  .+....++++++       ...|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID   78 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            46999999999999999999998  8999988642 1  1122332211111111  011111222333       3469


Q ss_pred             EEEEcCCCCCCC---C---CchhhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          117 IVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       117 vVIi~ag~~~~~---g---~~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      +||+++|.....   +   ......+..|+.....+.+.+.++.   ....++++|.....            .+.|..-
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~------------~g~~~~~  146 (239)
T TIGR01830        79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGL------------MGNAGQA  146 (239)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcccc------------CCCCCCc
Confidence            999999864211   1   1123456677777777777766542   23456666543321            0233333


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .++.++.....+.+.+++.++.  ..+.+.++
T Consensus       147 ~y~~~k~a~~~~~~~l~~~~~~--~g~~~~~i  176 (239)
T TIGR01830       147 NYAASKAGVIGFTKSLAKELAS--RNITVNAV  176 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhh--cCeEEEEE
Confidence            4555544334455666666542  34444444

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.63  E-value=0.00027  Score=61.47  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCCCCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVPRK  127 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag~~~~  127 (270)
                      |+|+||+|.+|++++..|+..++  +|.++=++........+.+... ..+. .+....++.++++|+|.||++.+... 
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSH-   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence            78999999999999999999887  8999888753222333333211 0010 01112346778999999999875432 


Q ss_pred             CCCchhhhHHhhHHHHHHHHHHHhHhCC
Q 024248          128 PGMTRDDLFNINAGIVKTLCEGIAKCCP  155 (270)
Q Consensus       128 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p  155 (270)
                        ..+       .+...++++++++.+-
T Consensus        77 --~~~-------~~~~~~li~Aa~~agV   95 (233)
T PF05368_consen   77 --PSE-------LEQQKNLIDAAKAAGV   95 (233)
T ss_dssp             --CCH-------HHHHHHHHHHHHHHT-
T ss_pred             --hhh-------hhhhhhHHHhhhcccc
Confidence              111       3445778888887763

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=97.63  E-value=0.0025  Score=55.49  Aligned_cols=114  Identities=14%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-h--hHHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~--~~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .++.|+|++|.+|..++..|+.+|.  +|++.+.... .  ....++.+..  ..+..    +.....+.+++       
T Consensus         7 ~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (247)
T PRK12935          7 KVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNHF   82 (247)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999998  8877654321 1  1112332211  11111    11111122222       


Q ss_pred             CCCCEEEEcCCCCCCCC------CchhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecC
Q 024248          113 TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sN  164 (270)
                      ...|+||+++|......      ....+.+..|+.....+++.+..+   ...+.++++|.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            34799999998643211      112344667777666666666543   23456666654

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.00083  Score=59.44  Aligned_cols=104  Identities=16%  Similarity=0.229  Sum_probs=62.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.+++.|+||+|.+|..++..|+.+|.  +|++++++....... ..+. ....+. .+....++++.+...|++|.+||
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~-~~~~-~~~~~~~D~~~~~~~~~~~~~iDilVnnAG   88 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSES-NDES-PNEWIKWECGKEESLDKQLASLDVLILNHG   88 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhh-hccC-CCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence            345899999999999999999999998  999999875211111 0111 000011 11112234455678999999998


Q ss_pred             CCCCCCCc---hhhhHHhhHHHHHHHHHHHhH
Q 024248          124 VPRKPGMT---RDDLFNINAGIVKTLCEGIAK  152 (270)
Q Consensus       124 ~~~~~g~~---r~~~~~~N~~i~~~i~~~i~~  152 (270)
                      .......+   ..+.+..|+.....+++.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  120 (245)
T PRK12367         89 INPGGRQDPENINKALEINALSSWRLLELFED  120 (245)
T ss_pred             cCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            64322222   234567787666555555443

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.62  E-value=0.0014  Score=57.49  Aligned_cols=116  Identities=20%  Similarity=0.276  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee--eeeccCCHHHH-------hCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~--~i~~t~d~~~a-------l~~A  115 (270)
                      .++.|+||+|.+|..++..|+..|.  +|++.|++....  ...++.+........  .+....++++.       +...
T Consensus        10 k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085         10 KNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            4799999999999999999999998  999999875321  122232211000000  01111112221       2357


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecC
Q 024248          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sN  164 (270)
                      |+||+++|.....   ..+   ....+..|+.....+.+.+.+.   ...+.|+++|.
T Consensus        88 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (254)
T PRK08085         88 DVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS  145 (254)
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            9999999864211   111   2234566765555555555443   23456666653

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.61  E-value=0.0012  Score=60.27  Aligned_cols=64  Identities=16%  Similarity=0.229  Sum_probs=45.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC---CCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~---ADvVIi~a  122 (270)
                      |||+|||. |.+|+.++..|+..|+  +|+++|+++...  .++.+..    .   ....++++.++.   +|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~---~~~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEAV--EALAEEG----A---TGADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHCC----C---eecCCHHHHHhhcCCCCEEEEEe
Confidence            68999997 9999999999999998  999999975422  2222211    1   113355555554   69999986

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.00067  Score=62.03  Aligned_cols=170  Identities=18%  Similarity=0.071  Sum_probs=87.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeee-eccCCH---HH-------Hh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGF-LGQQQL---ED-------AL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i-~~t~d~---~~-------al  112 (270)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+++....  ...++........+..+ ..-.|+   ++       ..
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45799999999999999999999998  999999875422  12233221101111110 011121   11       12


Q ss_pred             CCCCEEEEcCCCCCCCC--Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHH-HHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG--MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA-EVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g--~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t-~~~~~~sg  182 (270)
                      ...|++|..||....+.  .+   ....+..|...    ++.+.+.+++.  .+.|+++|.-..... .+. .-+.....
T Consensus        92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~-~~~~~~~~~~~~  168 (313)
T PRK05854         92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRG-AINWDDLNWERS  168 (313)
T ss_pred             CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCC-CcCccccccccc
Confidence            45899999998643211  11   12234556544    44555555432  345555553221000 000 00000011


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ++....++.+++....+-+.+++++......|.+..+.
T Consensus       169 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~  206 (313)
T PRK05854        169 YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAH  206 (313)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEe
Confidence            33344566777766677778887665444445544443

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.61  E-value=0.0026  Score=55.91  Aligned_cols=157  Identities=14%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-ee-eeeccCCHHHH-------hCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQLEDA-------LTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~ADv  117 (270)
                      ..+.|+|++|.+|..++..|++.|.  +|+++|+........++........ +. .+....++++.       +...|+
T Consensus        11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~   88 (253)
T PRK08993         11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHIDI   88 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4699999999999999999999998  9999987643222222221110000 00 01111112222       236899


Q ss_pred             EEEcCCCCCCC---CC---chhhhHHhhHHHHHHHHHHHh----HhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          118 VIIPAGVPRKP---GM---TRDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       118 VIi~ag~~~~~---g~---~r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      +|+++|.....   +.   +....+..|+.....+.+.+.    +..+.+.++++|.-...          .  +-+..-
T Consensus        89 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~----------~--~~~~~~  156 (253)
T PRK08993         89 LVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSF----------Q--GGIRVP  156 (253)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhc----------c--CCCCCc
Confidence            99999864211   11   123345677665555555443    32344666666543220          0  112223


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .++.++.....+-+.+|..+.  +..+++..+
T Consensus       157 ~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v  186 (253)
T PRK08993        157 SYTASKSGVMGVTRLMANEWA--KHNINVNAI  186 (253)
T ss_pred             chHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            455655444456677777764  334544333

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=97.61  E-value=0.0011  Score=57.81  Aligned_cols=152  Identities=18%  Similarity=0.172  Sum_probs=80.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHH-------hCCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDA-------LTGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~ADv  117 (270)
                      .+++.|+|++|++|+.++..|+++|+  +|++++++....     ..... ..+. .+....++++.       +...|+
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~~~~-----~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAFLTQ-----EDYPF-ATFVLDVSDAAAVAQVCQRLLAETGPLDV   79 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecchhhh-----cCCce-EEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35799999999999999999999998  999999865100     00000 0000 00001112222       345799


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      ||.++|......   .+   ....+..|......+++.+...   ...+.++++|.-...            .+.+..-.
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~------------~~~~~~~~  147 (252)
T PRK08220         80 LVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAH------------VPRIGMAA  147 (252)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhc------------cCCCCCch
Confidence            999988642111   11   1234566766555555555332   233456555532210            01222223


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ++.++.....+.+.+++.+.  +..+++.++
T Consensus       148 Y~~sK~a~~~~~~~la~e~~--~~~i~v~~i  176 (252)
T PRK08220        148 YGASKAALTSLAKCVGLELA--PYGVRCNVV  176 (252)
T ss_pred             hHHHHHHHHHHHHHHHHHhh--HhCeEEEEE
Confidence            45554444456667777653  334444333

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.0016  Score=57.87  Aligned_cols=112  Identities=18%  Similarity=0.154  Sum_probs=61.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHH-------hCCCCEEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDA-------LTGMDIVI  119 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~ADvVI  119 (270)
                      ++.|+||+|.+|..++..|+..|+  +|++++++....  .++..... ..+. .+....++++.       ....|+||
T Consensus         3 ~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi   77 (274)
T PRK05693          3 VVLITGCSSGIGRALADAFKAAGY--EVWATARKAEDV--EALAAAGF-TAVQLDVNDGAALARLAEELEAEHGGLDVLI   77 (274)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            699999999999999999999998  999999875321  11211100 0010 01111112222       24689999


Q ss_pred             EcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecC
Q 024248          120 IPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (270)
Q Consensus       120 i~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sN  164 (270)
                      +++|.....   ..+   ....+..|+.....+.+.+....  ..+.+++++.
T Consensus        78 ~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  130 (274)
T PRK05693         78 NNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGS  130 (274)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECC
Confidence            999864211   111   12334566655544555443221  1355666654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=97.60  E-value=0.00062  Score=60.13  Aligned_cols=149  Identities=18%  Similarity=0.206  Sum_probs=80.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-------HHHhhccccCcceeeeeccCCHHHHhCCCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-------~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      +++.|+|++|.+|..++..|+.+|.  +|++.|++.....       ..|+.+..   .+...  .....+.+...|++|
T Consensus        10 k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~g~id~li   82 (266)
T PRK06171         10 KIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHGGDGQHENYQFVPTDVSSAE---EVNHT--VAEIIEKFGRIDGLV   82 (266)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCccccccCceEEEEccCCCHH---HHHHH--HHHHHHHcCCCCEEE
Confidence            4799999999999999999999998  9999998753211       01221110   00000  001112234679999


Q ss_pred             EcCCCCCCC------------CCc---hhhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          120 IPAGVPRKP------------GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       120 i~ag~~~~~------------g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      +++|.....            ..+   ....+..|+.....+++.+.++.   ..+.|+++|.....            .
T Consensus        83 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~  150 (266)
T PRK06171         83 NNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL------------E  150 (266)
T ss_pred             ECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc------------C
Confidence            999863210            011   12245667666666666655432   23556666543321            0


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccce
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV  216 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~  216 (270)
                      +.+..-.++.++..-..+-+.++..+.  +..|++
T Consensus       151 ~~~~~~~Y~~sK~a~~~l~~~la~e~~--~~gi~v  183 (266)
T PRK06171        151 GSEGQSCYAATKAALNSFTRSWAKELG--KHNIRV  183 (266)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence            122223345543333445666777664  334544

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=97.60  E-value=0.00049  Score=61.79  Aligned_cols=103  Identities=22%  Similarity=0.273  Sum_probs=64.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC-CCCEEEEcCCCCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGVPRK  127 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~-~ADvVIi~ag~~~~  127 (270)
                      |+|+|++|+||+++...|...|+  +|+.+-++......  ..+.... .      -+.+++... ++|+||..||.+--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~~v~-~------~~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHPNVT-L------WEGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCcccc-c------cchhhhcccCCCCEEEECCCCccc
Confidence            68999999999999999999999  99999887643211  1111100 1      112333333 79999999997632


Q ss_pred             CC---Cc-hhhhHHhhHHHHHHHHHHHhHhCCCC-EEEEe
Q 024248          128 PG---MT-RDDLFNINAGIVKTLCEGIAKCCPKA-IVNLI  162 (270)
Q Consensus       128 ~g---~~-r~~~~~~N~~i~~~i~~~i~~~~p~a-~viv~  162 (270)
                      ..   .. ...+..--+...+.+.+.|.+..... .+|+.
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isa  109 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISA  109 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEec
Confidence            11   11 12233334567788888888665444 34433

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.002  Score=56.70  Aligned_cols=158  Identities=18%  Similarity=0.158  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      .+++.|+|++|.+|..++..|+++|.  +|+++|+++...  ...++........+..    +....+++++       +
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34799999999999999999999998  999999975421  1223322000011111    1111122222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|.++|......   .+   ....+..|+.....+++.    +.+. ..+.|+++|.....            .+
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------~~  151 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIASTHAF------------KI  151 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECChhhc------------cC
Confidence            46899999998642111   11   122345565554444444    4332 34566666543221            02


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++..-..+-+.+++.+.  +..|++..+-
T Consensus       152 ~~~~~~Y~~sKaa~~~~~~~la~el~--~~gIrvn~v~  187 (260)
T PRK07063        152 IPGCFPYPVAKHGLLGLTRALGIEYA--ARNVRVNAIA  187 (260)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence            23233355554444556777777764  3455554443

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.0018  Score=57.36  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      |+|.|+||+|.+|..++..|+.+|.  +|++.+++..
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~   35 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEE   35 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            4799999999999999999999998  9999998753

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.59  E-value=0.00038  Score=61.14  Aligned_cols=71  Identities=23%  Similarity=0.290  Sum_probs=46.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC---HHHH-hCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d---~~~a-l~~ADvVIi~a  122 (270)
                      |+++|+|+ |.+|+++|..|...|+  +|+++|.+++.... -+.+......+  ....+|   +++| +.++|++|.+.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~-~~~~~~~~~~v--~gd~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEE-FLADELDTHVV--IGDATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHH-HhhhhcceEEE--EecCCCHHHHHhcCCCcCCEEEEee
Confidence            79999998 9999999999999999  99999998643211 01110000000  011122   4444 78999999986


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      |
T Consensus        75 ~   75 (225)
T COG0569          75 G   75 (225)
T ss_pred             C
Confidence            4

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.58  E-value=0.0016  Score=56.96  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .++|.|+||+|.+|.+++..|+..|.  +|++++++..
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~~   44 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRVE   44 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            46899999999999999999999998  8999998753

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.58  E-value=0.0004  Score=63.26  Aligned_cols=64  Identities=20%  Similarity=0.284  Sum_probs=48.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +||+|||. |.+|..++..|+..|+  +|+++|+++..  ..++....       .....++.+++++||+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g-------~~~~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG-------ATPAASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC-------CcccCCHHHHHhcCCEEEEec
Confidence            38999997 9999999999999998  99999997543  22232211       112346778899999999986

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.57  E-value=0.0035  Score=55.72  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .+++.|+||+|.+|..++..|+..|.  .|+++|++..
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~   45 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQE   45 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            45799999999999999999999998  9999998753

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.57  E-value=0.0018  Score=56.85  Aligned_cols=159  Identities=18%  Similarity=0.186  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcce-e-eeeccCCHHH-------HhCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVV-R-GFLGQQQLED-------ALTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~-~-~i~~t~d~~~-------al~~  114 (270)
                      .++|.|+|++|.+|..++..|+..|.  +|+++|++....  ...++.+....... . .+....+.++       .+..
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   88 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK   88 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999998  899999865321  12223221100000 0 0111111222       2345


Q ss_pred             CCEEEEcCCCCCC--CCCch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          115 MDIVIIPAGVPRK--PGMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       115 ADvVIi~ag~~~~--~g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      .|++|+++|....  ...+.   ...+..|+.....+++.+..+   ...+.++++|.....            .+.+..
T Consensus        89 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~  156 (255)
T PRK06113         89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE------------NKNINM  156 (255)
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccccc------------CCCCCc
Confidence            7999999985321  11122   223567776666666665432   233456656543221            022223


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -.++.++.....+.+.++..+.  +..|++.++.
T Consensus       157 ~~Y~~sK~a~~~~~~~la~~~~--~~~i~v~~v~  188 (255)
T PRK06113        157 TSYASSKAAASHLVRNMAFDLG--EKNIRVNGIA  188 (255)
T ss_pred             chhHHHHHHHHHHHHHHHHHhh--hhCeEEEEEe
Confidence            3455554444455666776653  4445554544

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.57  E-value=0.0035  Score=54.90  Aligned_cols=148  Identities=16%  Similarity=0.147  Sum_probs=81.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee--eeeccCCHHHH-------hCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~--~i~~t~d~~~a-------l~~A  115 (270)
                      +++.|+||+|.+|..++..|++.|.  +|+++++++...  ...++..........  .+....+.++.       +...
T Consensus         7 k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4799999999999999999999998  999999875321  122332211100000  01111112222       2368


Q ss_pred             CEEEEcCCCCCC--C--CCc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          116 DIVIIPAGVPRK--P--GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       116 DvVIi~ag~~~~--~--g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      |++|.++|....  +  ..+   ....+..|+.    ..+.+.+.+.+. ..+.++++|.....           ..+.|
T Consensus        85 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~-----------~~~~~  152 (254)
T PRK07478         85 DIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGH-----------TAGFP  152 (254)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhh-----------ccCCC
Confidence            999999986321  1  111   2234566664    344455555443 33556655542210           01233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhC
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ..-.++.++.....+-+.+++.++
T Consensus       153 ~~~~Y~~sK~a~~~~~~~la~e~~  176 (254)
T PRK07478        153 GMAAYAASKAGLIGLTQVLAAEYG  176 (254)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHh
Confidence            334466665555567777888775

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.57  E-value=0.002  Score=58.22  Aligned_cols=98  Identities=17%  Similarity=0.127  Sum_probs=62.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCc--cEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~--~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +||+|||+ |.+|..++..|...+..  .+|++++++... ....+...  ....   ..+.+.+++++++|+||++...
T Consensus         2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~---~~~~~~~e~~~~aDvVilavpp   74 (277)
T PRK06928          2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTV---ELADNEAEIFTKCDHSFICVPP   74 (277)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCe---EEeCCHHHHHhhCCEEEEecCH
Confidence            58999997 99999999999888721  389999986421 12222211  1111   1234666778999999998621


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                                      ..+.++++.+..+. ++..++.+.+-++
T Consensus        75 ----------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~  102 (277)
T PRK06928         75 ----------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS  102 (277)
T ss_pred             ----------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                            22345666665543 4556666677666

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.56  E-value=0.0022  Score=56.67  Aligned_cols=145  Identities=13%  Similarity=0.120  Sum_probs=79.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeee-eccCC---HHH-------HhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGF-LGQQQ---LED-------ALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i-~~t~d---~~~-------al~  113 (270)
                      +++.|+|++|.+|..++..|+.+|.  +|++.+++....  ...++....  ..+..+ ...++   .++       .+.
T Consensus        11 k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097         11 KIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999998  899998875321  122222211  011100 00112   112       234


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHH----HHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|++|+++|.....   ..+   ....+..|+....    .+.+.+.+ ...+.|++++.....            .+.
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~------------~~~  153 (265)
T PRK07097         87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMMSE------------LGR  153 (265)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcccc------------CCC
Confidence            579999999864211   111   1223445554433    34444433 245667777654331            023


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +....++.++..-..+.+.+++.++
T Consensus       154 ~~~~~Y~~sKaal~~l~~~la~e~~  178 (265)
T PRK07097        154 ETVSAYAAAKGGLKMLTKNIASEYG  178 (265)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhh
Confidence            3344566655444456777777764

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.56  E-value=0.00055  Score=61.81  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=47.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~--~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .|||++||+ |.+|++++..|++.|+  ..+|+.+|+++..  ...+.+..   .+.   .+++.++.+++||+||++.
T Consensus         2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~---g~~---~~~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY---GIT---ITTNNNEVANSADILILSI   71 (272)
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc---CcE---EeCCcHHHHhhCCEEEEEe
Confidence            469999997 9999999999998875  3479999986432  22222210   011   1345567789999999986

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.54  E-value=0.00074  Score=60.75  Aligned_cols=66  Identities=20%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|||. |.+|..++..|...|+..+|+.+|+++...  ..+.....   .   ....+++++ .+||+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~--~~~~~~g~---~---~~~~~~~~~-~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHL--KKALELGL---V---DEIVSFEEL-KKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHH--HHHHHCCC---C---cccCCHHHH-hcCCEEEEeC
Confidence            68999997 999999999999888755889999875321  11111110   0   012245554 4699999996

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.53  E-value=0.00098  Score=63.55  Aligned_cols=103  Identities=23%  Similarity=0.224  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCc-cee-eeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA-VVR-GFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~-~~~-~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.++|+|+||+|.+|..++..|+++|.  +|+++++++... ...+....... .+. .+...+++++.+.+.|++|+.+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l-~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKI-TLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-HHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            345899999999999999999999998  999999865321 11111110000 010 0111123445678899999998


Q ss_pred             CCCCCCCCc---hhhhHHhhHHHHHHHHHHH
Q 024248          123 GVPRKPGMT---RDDLFNINAGIVKTLCEGI  150 (270)
Q Consensus       123 g~~~~~g~~---r~~~~~~N~~i~~~i~~~i  150 (270)
                      |.......+   -.+.++.|......+++.+
T Consensus       254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~  284 (406)
T PRK07424        254 GINVHGERTPEAINKSYEVNTFSAWRLMELF  284 (406)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            865322222   2345667776555555554

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.0086  Score=53.16  Aligned_cols=147  Identities=16%  Similarity=0.097  Sum_probs=78.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCc-c-ee-eeeccCCH-------HHHhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNA-V-VR-GFLGQQQL-------EDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~-~-~~-~i~~t~d~-------~~al~~  114 (270)
                      ++++|+||+|.+|..++..|+..|.  +|++++++....  ...++....... . +. .+....+.       .+.+..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS   78 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4799999999999999999999998  899999875321  112222111100 0 00 01100111       122346


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHh----HhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|+||+++|......   .+   -...+..|+.....+++.+.    +....+.|+++|.....            .+.|
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~------------~~~~  146 (272)
T PRK07832         79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGL------------VALP  146 (272)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccccc------------CCCC
Confidence            899999998642111   11   12345666665555555543    22234566666644321            0223


Q ss_pred             CCCeeeechhhHHHHHHHHHHHh
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      ..-.++.++.....+.+.++..+
T Consensus       147 ~~~~Y~~sK~a~~~~~~~l~~e~  169 (272)
T PRK07832        147 WHAAYSASKFGLRGLSEVLRFDL  169 (272)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHh
Confidence            23335554433334566666554

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.53  E-value=0.0018  Score=56.96  Aligned_cols=153  Identities=18%  Similarity=0.129  Sum_probs=80.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHH-HhhccccCcceee----eeccCCHHHHh-------C
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTNAVVRG----FLGQQQLEDAL-------T  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~-dl~~~~~~~~~~~----i~~t~d~~~al-------~  113 (270)
                      .++|.|+||+|.+|..++..|++.|.  .|++++++....... .+....  ..+..    +....++++.+       .
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG   90 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999998  999999873211111 121111  11111    11111222223       2


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      ..|++|+++|.....   ..+   ....+..|+.....+.+.+.++   ...+.++++|.....            .+.+
T Consensus        91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~  158 (258)
T PRK06935         91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSF------------QGGK  158 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhc------------cCCC
Confidence            679999999864211   111   2233455655544444443332   123566666543221            0112


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccce
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDV  216 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~  216 (270)
                      ..-.++.++.....+-+.++++++  +..+++
T Consensus       159 ~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v  188 (258)
T PRK06935        159 FVPAYTASKHGVAGLTKAFANELA--AYNIQV  188 (258)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence            122345554444557777888775  334443

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.0022  Score=56.52  Aligned_cols=114  Identities=23%  Similarity=0.237  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCCH---HHH------hC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQL---EDA------LT  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d~---~~a------l~  113 (270)
                      .++|.|+||+|.+|..++..|+.+|.  +|++++++....  ...++...   ..+..+. .-.|.   ++.      +.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPYP---GRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            45799999999999999999999998  999999875321  11122111   1111110 01121   111      34


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sN  164 (270)
                      ..|+||+++|......   .+   -.+.+..|+.....+++.+.++   .+.+.+++++.
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS  139 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS  139 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence            6899999998643211   11   1234567776666666665442   22355665554

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.004  Score=54.59  Aligned_cols=147  Identities=14%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccE-EEEEeCCCChh--HHHHhhccccCcceeee-eccCC---HHHH-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPG--VTADISHMDTNAVVRGF-LGQQQ---LEDA-------  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~e-V~LvD~~~~~~--~~~dl~~~~~~~~~~~i-~~t~d---~~~a-------  111 (270)
                      .++|.|+|++|.+|..++..|+..|.  + |++++++....  ...++....  ..+..+ ..-++   +++.       
T Consensus         6 ~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK06198          6 GKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEALG--AKAVFVQADLSDVEDCRRVVAAADEA   81 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999987  6 99999875321  111221111  111100 01112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          112 LTGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      +.+.|++|+++|......   .+.   ...+..|+.....+++.+    .+....+.++++|.....            .
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~------------~  149 (260)
T PRK06198         82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAH------------G  149 (260)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccc------------c
Confidence            236899999998653211   111   223456665555544444    333223556666532221            0


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +.+..-.++.++.....+-+.++..+.
T Consensus       150 ~~~~~~~Y~~sK~a~~~~~~~~a~e~~  176 (260)
T PRK06198        150 GQPFLAAYCASKGALATLTRNAAYALL  176 (260)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence            222223455544333445566666654

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.53  E-value=0.0033  Score=55.19  Aligned_cols=158  Identities=12%  Similarity=0.124  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHH-------hCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-------LTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~a-------l~~ADvV  118 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|++.+..... ...++.+.......-.+....+++++       +...|+|
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~l   83 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAEN-EAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVL   83 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcHH-HHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            35899999999999999999999998  88888764321 11122211000000001111122222       3467999


Q ss_pred             EEcCCCCCCC---CCc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          119 IIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       119 Ii~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      |+++|.....   ..+   ....+..|+..    .+.+++.+++. ..+.|+++|.....           ....+..-.
T Consensus        84 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS~~~~-----------~~~~~~~~~  151 (255)
T PRK06463         84 VNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIASNAGI-----------GTAAEGTTF  151 (255)
T ss_pred             EECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHHhC-----------CCCCCCccH
Confidence            9999874311   111   12335566655    46666666543 34566666532210           000112233


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ++.++.....+-+.++..++  +..+++.++.
T Consensus       152 Y~asKaa~~~~~~~la~e~~--~~~i~v~~i~  181 (255)
T PRK06463        152 YAITKAGIIILTRRLAFELG--KYGIRVNAVA  181 (255)
T ss_pred             hHHHHHHHHHHHHHHHHHhh--hcCeEEEEEe
Confidence            55555444556677777654  3445554444

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.52  E-value=0.0025  Score=58.88  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=31.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ++|+|+||+|.+|..++..|+.+|.  +|+++++++.
T Consensus         9 k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~   43 (334)
T PRK07109          9 QVVVITGASAGVGRATARAFARRGA--KVVLLARGEE   43 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            4799999999999999999999998  9999998753

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.52  E-value=0.0015  Score=59.74  Aligned_cols=117  Identities=15%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHH--H--h--hccccCcceeeeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--D--I--SHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~--d--l--~~~~~~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      +|||+|+|+ |-||+.++..|...|.  +|+++++......+.  +  +  ........+. .... +. +.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~-~~~~-~~-~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYA-IPAE-TA-DAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeec-cCCC-Cc-ccccccCEEE
Confidence            689999998 9999999999999998  999999964211110  0  1  0000000011 1111 11 2346789999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ++.-..        +        ..+.++.+... .+++.++.+-|-++.     -+.+.+.  ||.+++++.
T Consensus        76 v~vK~~--------~--------~~~al~~l~~~l~~~t~vv~lQNGv~~-----~e~l~~~--~~~~~v~~g  125 (305)
T PRK05708         76 LACKAY--------D--------AEPAVASLAHRLAPGAELLLLQNGLGS-----QDAVAAR--VPHARCIFA  125 (305)
T ss_pred             EECCHH--------h--------HHHHHHHHHhhCCCCCEEEEEeCCCCC-----HHHHHHh--CCCCcEEEE
Confidence            996221        1        13344455544 378888888898873     2233333  666777654

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.52  E-value=0.0034  Score=54.64  Aligned_cols=148  Identities=14%  Similarity=0.115  Sum_probs=77.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCccee--eeeccCC-------HHHHhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVR--GFLGQQQ-------LEDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~--~i~~t~d-------~~~al~~  114 (270)
                      .+|.|+||+|++|++++..|+.+|.  +|++.......   ....++..........  .+....+       +.+.+..
T Consensus         7 ~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          7 KVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            4899999999999999999999998  87776543211   1111111110000000  0111111       1122346


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      .|+||+++|......   .+.   .+.+..|+.....+++.+.++- ..+.++++|.-..            ..+++..-
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~------------~~~~~~~~  152 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG------------IRPAYGLS  152 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc------------cCCCCCch
Confidence            899999998632111   111   2334556555555555554432 2356666553221            01344444


Q ss_pred             eeeechhhHHHHHHHHHHHhC
Q 024248          188 LLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~  208 (270)
                      .++.++.....+...++++++
T Consensus       153 ~Y~~sK~~~~~~~~~l~~~~~  173 (252)
T PRK06077        153 IYGAMKAAVINLTKYLALELA  173 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            566655555566677778764

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.0037  Score=54.84  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=64.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HHHhhccccCccee--eeeccCCHHHHh-------CCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTNAVVR--GFLGQQQLEDAL-------TGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~dl~~~~~~~~~~--~i~~t~d~~~al-------~~AD  116 (270)
                      .+|.|+||+|.+|..++..|+++|.  +|+++++++.... ..++..........  .+....++++++       ...|
T Consensus         8 ~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   85 (258)
T PRK08628          8 KVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRID   85 (258)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence            4799999999999999999999998  8999988764221 22332211100000  011111222223       3579


Q ss_pred             EEEEcCCCCCCCCC-----chhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEec
Q 024248          117 IVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLIS  163 (270)
Q Consensus       117 vVIi~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~s  163 (270)
                      +||+++|.......     +-.+.+..|+.....+.+.+.++.  ..+.++++|
T Consensus        86 ~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s  139 (258)
T PRK08628         86 GLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS  139 (258)
T ss_pred             EEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence            99999986422111     122345666665555555554322  234555554

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.50  E-value=0.00096  Score=62.83  Aligned_cols=55  Identities=25%  Similarity=0.317  Sum_probs=44.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .+||+|||.+|.+|..++..|.+. ++  +|+.+|+.          +.          ...+.++.+++||+||+++
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence            459999998899999999999875 55  99999973          11          1235667899999999996

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.50  E-value=0.002  Score=56.88  Aligned_cols=156  Identities=15%  Similarity=0.095  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH--HHhhccccCccee-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTNAVVR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~--~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.....  .++... . ..+. .+....+.+++       +...
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~~~g~i   81 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSAEKLASLRQRFGDH-V-LVVEGDVTSYADNQRAVDQTVDAFGKL   81 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc-c-eEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            45899999999999999999999998  99999987532211  111100 0 0000 01111112222       3468


Q ss_pred             CEEEEcCCCCCCC----CCch-------hhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          116 DIVIIPAGVPRKP----GMTR-------DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       116 DvVIi~ag~~~~~----g~~r-------~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      |++|.++|.....    ..+.       ...+..|+.....+++.+.+..  ..+.+++++.-...            .+
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~  149 (263)
T PRK06200         82 DCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSF------------YP  149 (263)
T ss_pred             CEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhc------------CC
Confidence            9999999864211    1111       1223455554444444443221  23555555432110            01


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .+..-.++.++-....+-+.+|..++-  . |++..+-
T Consensus       150 ~~~~~~Y~~sK~a~~~~~~~la~el~~--~-Irvn~i~  184 (263)
T PRK06200        150 GGGGPLYTASKHAVVGLVRQLAYELAP--K-IRVNGVA  184 (263)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhc--C-cEEEEEe
Confidence            222334666655555677888888753  2 6554443

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0026  Score=54.84  Aligned_cols=158  Identities=14%  Similarity=0.130  Sum_probs=80.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HHHhhccccCcceeeeeccCCHHHH---h--CCCCEEEEc
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLGQQQLEDA---L--TGMDIVIIP  121 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~dl~~~~~~~~~~~i~~t~d~~~a---l--~~ADvVIi~  121 (270)
                      ++.|+|++|.+|..++..|+..|.  +|+++|++..... ..++...  ....-.+....++++.   +  ...|+||++
T Consensus         3 ~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~--~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~   78 (225)
T PRK08177          3 TALIIGASRGLGLGLVDRLLERGW--QVTATVRGPQQDTALQALPGV--HIEKLDMNDPASLDQLLQRLQGQRFDLLFVN   78 (225)
T ss_pred             EEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCCcchHHHHhcccc--ceEEcCCCCHHHHHHHHHHhhcCCCCEEEEc
Confidence            699999999999999999999998  9999999764221 1111111  0000001111112222   2  258999999


Q ss_pred             CCCCCCCC-----Cch---hhhHHhhHHHHHHHHHHHhHhCC-C-CEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          122 AGVPRKPG-----MTR---DDLFNINAGIVKTLCEGIAKCCP-K-AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       122 ag~~~~~g-----~~r---~~~~~~N~~i~~~i~~~i~~~~p-~-a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      +|......     .+.   ...+..|+.....+.+.+..+.. . +.+++.+.....    .     .....+....++.
T Consensus        79 ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~----~-----~~~~~~~~~~Y~~  149 (225)
T PRK08177         79 AGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGS----V-----ELPDGGEMPLYKA  149 (225)
T ss_pred             CcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccc----c-----ccCCCCCccchHH
Confidence            98642111     111   12233444444444444443321 2 444444432221    0     0000011123566


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ++.....+-+.++++++-  ..+++.++.
T Consensus       150 sK~a~~~~~~~l~~e~~~--~~i~v~~i~  176 (225)
T PRK08177        150 SKAALNSMTRSFVAELGE--PTLTVLSMH  176 (225)
T ss_pred             HHHHHHHHHHHHHHHhhc--CCeEEEEEc
Confidence            655566677888887653  345544444

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0059  Score=53.40  Aligned_cols=149  Identities=19%  Similarity=0.160  Sum_probs=80.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-Ch--hHHHHhhccccCcc-ee-eeeccCC-------HHHHh-
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP--GVTADISHMDTNAV-VR-GFLGQQQ-------LEDAL-  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-~~--~~~~dl~~~~~~~~-~~-~i~~t~d-------~~~al-  112 (270)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.+... ..  ....++........ +. .+....+       ..+.+ 
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence            35799999999999999999999998  888875432 21  11222221100000 00 0000001       11111 


Q ss_pred             -----CCCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          113 -----TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       113 -----~~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                           ...|++|.++|.....   ..+   ....+..|+.....+++.+.+.. ..+.|+++|.....            
T Consensus        82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~------------  149 (252)
T PRK12747         82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR------------  149 (252)
T ss_pred             hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccc------------
Confidence                 2689999999864211   111   12345577666665555554432 34667666643321            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .+.|..-.++.++.....+-+.++..++
T Consensus       150 ~~~~~~~~Y~~sKaa~~~~~~~la~e~~  177 (252)
T PRK12747        150 ISLPDFIAYSMTKGAINTMTFTLAKQLG  177 (252)
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence            0223333466666666667777888775

>PRK08589 short chain dehydrogenase; Validated

Probab=97.49  E-value=0.0032  Score=56.06  Aligned_cols=155  Identities=16%  Similarity=0.148  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCcc-ee-eeeccCCHHH-------HhCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV-VR-GFLGQQQLED-------ALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~-~~-~i~~t~d~~~-------al~~A  115 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++++++. .....++.+...... +. .+....+.++       .+...
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            34799999999999999999999998  9999999731 111223322110000 00 0111111222       22357


Q ss_pred             CEEEEcCCCCCCCC----Cch---hhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          116 DIVIIPAGVPRKPG----MTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       116 DvVIi~ag~~~~~g----~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      |++|.++|.....+    .+.   ...+..|+...    +.+.+.+.+.  .+.|+++|.....            .+.+
T Consensus        84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------------~~~~  149 (272)
T PRK08589         84 DVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFSGQ------------AADL  149 (272)
T ss_pred             CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchhhc------------CCCC
Confidence            99999998643211    111   12334555443    4444544432  3667766643321            0122


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEE
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V  218 (270)
                      ..-.++.++..-..+.+.+|+.++-  ..|++.+
T Consensus       150 ~~~~Y~asKaal~~l~~~la~e~~~--~gI~v~~  181 (272)
T PRK08589        150 YRSGYNAAKGAVINFTKSIAIEYGR--DGIRANA  181 (272)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhh--cCeEEEE
Confidence            2223455544445677778877643  3444433

>PRK09134 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0028  Score=55.72  Aligned_cols=157  Identities=15%  Similarity=0.139  Sum_probs=83.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hh--HHHHhhccccCcceeeee-ccCC---HHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al------  112 (270)
                      .+++.|+||+|++|.+++..|++.|.  .|++++.... ..  ....+....  ..+..+. ..+|   +++++      
T Consensus         9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  8888776432 11  111222111  1111110 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHhCC---CCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCCP---KAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p---~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                       ...|+||+++|.....   ..+   ....+..|+.....+++.+.++.+   .+.+++++....          +.  .
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~----------~~--~  152 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRV----------WN--L  152 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhh----------cC--C
Confidence             3479999999864221   111   233567787766667766655432   345554432111          00  0


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .|....++.++.....+-+.+++.++-  . +++.++..
T Consensus       153 ~p~~~~Y~~sK~a~~~~~~~la~~~~~--~-i~v~~i~P  188 (258)
T PRK09134        153 NPDFLSYTLSKAALWTATRTLAQALAP--R-IRVNAIGP  188 (258)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhcC--C-cEEEEeec
Confidence            121123555555555566777777642  2 65555543

>TIGR02415 23BDH acetoin reductases

Probab=97.49  E-value=0.0026  Score=55.52  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=30.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ++.|+|++|.+|..++..|++.|.  +|++++++.
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~   34 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNE   34 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            689999999999999999999998  999999874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK05855 short chain dehydrogenase; Validated

Probab=97.49  E-value=0.0031  Score=61.58  Aligned_cols=160  Identities=16%  Similarity=0.148  Sum_probs=85.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee--eeeccCCHHHH-------h
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDA-------L  112 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~--~i~~t~d~~~a-------l  112 (270)
                      .+.+++.|+||+|.+|..++..|+.+|.  +|++++++....  ...++..........  .+......++.       +
T Consensus       313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~  390 (582)
T PRK05855        313 FSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH  390 (582)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            4456899999999999999999999999  899999975321  112222111000000  01101111121       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHH----HHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|.+||......   .+   -...+..|+.....++    +.+.+....+.|+++|.-...            .+
T Consensus       391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~  458 (582)
T PRK05855        391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAY------------AP  458 (582)
T ss_pred             CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhc------------cC
Confidence            35799999998753211   11   1233556765554444    444444445667766643221            02


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .+..-.++.++.....+...++.++.  +..|++.++
T Consensus       459 ~~~~~~Y~~sKaa~~~~~~~l~~e~~--~~gi~v~~v  493 (582)
T PRK05855        459 SRSLPAYATSKAAVLMLSECLRAELA--AAGIGVTAI  493 (582)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            23333455554444456666666654  334544333

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.49  E-value=0.00088  Score=65.05  Aligned_cols=100  Identities=16%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC---CCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT---GMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~---~ADvVIi~ag  123 (270)
                      ++|+|||. |.+|+++|..|+.+|+  +|+++|+++..  ..++.......... +..+.+++++++   ++|+||+++-
T Consensus         2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~-i~~~~s~~e~v~~l~~~d~Iil~v~   75 (470)
T PTZ00142          2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTR-VKGYHTLEELVNSLKKPRKVILLIK   75 (470)
T ss_pred             CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCc-ceecCCHHHHHhcCCCCCEEEEEeC
Confidence            38999997 9999999999999999  99999997543  22222210000100 123457777775   5898888752


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~  167 (270)
                      .+               +.+.++++.+..+ .++.++|..||-..
T Consensus        76 ~~---------------~~v~~vi~~l~~~L~~g~iIID~gn~~~  105 (470)
T PTZ00142         76 AG---------------EAVDETIDNLLPLLEKGDIIIDGGNEWY  105 (470)
T ss_pred             Ch---------------HHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence            11               2234444455443 36778888887543

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.0024  Score=55.79  Aligned_cols=148  Identities=14%  Similarity=0.070  Sum_probs=77.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcc-ee-eeeccCCHHHH-------hCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAV-VR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~A  115 (270)
                      ++|.|+||+|.+|..++..|+..|.  .|+++|++...  ....++........ +. .+....+.+++       +...
T Consensus         9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999998  99999987432  11222322110000 10 01111112222       2358


Q ss_pred             CEEEEcCCCCCC--C--CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRK--P--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|+++|....  +  ..+   ....+..|+.....+.+.+.++   .....++++|.....            .+.+.
T Consensus        87 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~  154 (252)
T PRK07035         87 DILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGV------------SPGDF  154 (252)
T ss_pred             CEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhc------------CCCCC
Confidence            999999874211  1  111   1234556666655555444332   233566666532210            01222


Q ss_pred             CCeeeechhhHHHHHHHHHHHhC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .-.++.++.....+.+.+++.++
T Consensus       155 ~~~Y~~sK~al~~~~~~l~~e~~  177 (252)
T PRK07035        155 QGIYSITKAAVISMTKAFAKECA  177 (252)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHh
Confidence            23355544444456666777764

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.0029  Score=55.26  Aligned_cols=77  Identities=13%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHh-hccccCccee--eeeccCCHHHHhC-CCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADI-SHMDTNAVVR--GFLGQQQLEDALT-GMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl-~~~~~~~~~~--~i~~t~d~~~al~-~ADvVIi~  121 (270)
                      ++|.|+||+|.+|..++..|++.|.  +|++.+++.... ...+. ........+.  .+....+++.++. +.|+||++
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            3799999999999999999999998  999998864321 11111 1110000110  1111123444454 89999999


Q ss_pred             CCCC
Q 024248          122 AGVP  125 (270)
Q Consensus       122 ag~~  125 (270)
                      +|..
T Consensus        81 ag~~   84 (257)
T PRK09291         81 AGIG   84 (257)
T ss_pred             CCcC
Confidence            9865

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.47  E-value=0.00071  Score=62.84  Aligned_cols=97  Identities=22%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      -..++|+|+|. |.||..+|..|...|+  +|..+|+.......  ....     .   . ..++++.++.||+|+++..
T Consensus       148 L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~--~~~~-----~---~-~~~l~ell~~aDiV~l~lP  213 (333)
T PRK13243        148 VYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAE--KELG-----A---E-YRPLEELLRESDFVSLHVP  213 (333)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhH--HHcC-----C---E-ecCHHHHHhhCCEEEEeCC
Confidence            45679999998 9999999999998898  99999986432111  1111     0   1 1367888999999999873


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ...   .++ .++  |    .+.++.+   .|++++|+++  ..+|
T Consensus       214 ~t~---~T~-~~i--~----~~~~~~m---k~ga~lIN~aRg~~vd  246 (333)
T PRK13243        214 LTK---ETY-HMI--N----EERLKLM---KPTAILVNTARGKVVD  246 (333)
T ss_pred             CCh---HHh-hcc--C----HHHHhcC---CCCeEEEECcCchhcC
Confidence            221   111 111  1    2233333   4788999987  4455

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.45  E-value=0.0014  Score=56.66  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .+|.|+|++|++|+.++..|++.|.  +|+++++++.
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~   40 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNEN   40 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            4899999999999999999999998  9999998753

>PRK07574 formate dehydrogenase; Provisional

Probab=97.45  E-value=0.0017  Score=61.54  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=66.3

Q ss_pred             cccccccccc-CCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHH
Q 024248           31 SGLGRMDCRA-KGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLE  109 (270)
Q Consensus        31 ~~~~~~~~~~-~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~  109 (270)
                      +.|.+..+.. ......++|+|+|. |.||..++..|...|+  +|..+|+.........  ...    +   ....+++
T Consensus       176 g~W~~~~~~~~~~~L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~~--~~g----~---~~~~~l~  243 (385)
T PRK07574        176 GGWNIADCVSRSYDLEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVEQ--ELG----L---TYHVSFD  243 (385)
T ss_pred             CCCCcccccccceecCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhHh--hcC----c---eecCCHH
Confidence            4566543211 12345679999997 9999999999998898  9999998642111110  000    0   1123688


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       110 ~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +.++.||+|+++.....   .+ ..++  |    .+.+..+   .+++++|+++
T Consensus       244 ell~~aDvV~l~lPlt~---~T-~~li--~----~~~l~~m---k~ga~lIN~a  284 (385)
T PRK07574        244 SLVSVCDVVTIHCPLHP---ET-EHLF--D----ADVLSRM---KRGSYLVNTA  284 (385)
T ss_pred             HHhhcCCEEEEcCCCCH---HH-HHHh--C----HHHHhcC---CCCcEEEECC
Confidence            99999999999863221   01 1111  1    2333333   4788999887

>PRK12743 oxidoreductase; Provisional

Probab=97.44  E-value=0.012  Score=51.77  Aligned_cols=148  Identities=14%  Similarity=0.099  Sum_probs=77.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hh--HHHHhhccccCccee--eeeccCCHHHH-------hCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTNAVVR--GFLGQQQLEDA-------LTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~--~~~dl~~~~~~~~~~--~i~~t~d~~~a-------l~~  114 (270)
                      .+|.|+||+|.+|..++..|++.|.  +|++++.... ..  ...++..........  .+....+++++       +..
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            3799999999999999999999998  8888765432 11  112222111100100  01111112121       235


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|+||+++|......   .+   ....+..|+.....+.+.+.++    ...+.++++|.-...            .+.+
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~------------~~~~  148 (256)
T PRK12743         81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH------------TPLP  148 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc------------CCCC
Confidence            799999998643211   11   1234556666555555554432    223566666643221            0123


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhC
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ..-.++.++.....+-+.+++.+.
T Consensus       149 ~~~~Y~~sK~a~~~l~~~la~~~~  172 (256)
T PRK12743        149 GASAYTAAKHALGGLTKAMALELV  172 (256)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhh
Confidence            333455554444456666677654

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.0048  Score=54.79  Aligned_cols=152  Identities=15%  Similarity=0.142  Sum_probs=80.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh------CC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL------TG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al------~~  114 (270)
                      ..+.|+|++|.+|..++..|++.|.  +|+++|++....  ...++.... ...+..    +....+.++.+      ..
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            3689999999999999999999998  999999875321  112222110 011110    11111222222      35


Q ss_pred             CCEEEEcCCCCCCC---CCc---hhhhHHhhH----HHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKP---GMT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~---g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|++|.++|.....   ..+   ....+..|+    ..++.+.+.+++. ..+.||++|.....            .+.|
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~-~~g~Ii~isS~~~~------------~~~~  152 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK-GFGRIIYSTSVAIK------------EPIP  152 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCcccc------------CCCC
Confidence            89999999864321   111   122344453    3456666666543 34666666643220            0122


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccce
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDV  216 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~  216 (270)
                      ..-.++.++-.-..+-+.+|..++  +..|++
T Consensus       153 ~~~~y~asKaal~~l~~~la~el~--~~gIrV  182 (263)
T PRK08339        153 NIALSNVVRISMAGLVRTLAKELG--PKGITV  182 (263)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence            112233443333456677777764  344443

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.44  E-value=0.0016  Score=51.73  Aligned_cols=72  Identities=21%  Similarity=0.302  Sum_probs=44.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHH---HhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~---dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|+|++|.+|..++..+....-..=+..+|++.....-.   ++.... ...   +..++|+++.+..+|+||-..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~---~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLG---VPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-S---SBEBS-HHHHTTH-SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Ccc---cccchhHHHhcccCCEEEEcC
Confidence            699999999999999999888844333355667765211112   222221 111   223568989899999988763

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.43  E-value=0.0085  Score=53.03  Aligned_cols=157  Identities=15%  Similarity=0.147  Sum_probs=92.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeecc-------CCHHHHhCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-------QQLEDALTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t-------~d~~~al~~ADv  117 (270)
                      +-+.|+|||+-+|..+|..|++.|.  +|+|..++.+  +..+.++.+....+..-.+...       ....+.+...|+
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            3588999999999999999999999  9999999864  2333344421011110001100       112344678999


Q ss_pred             EEEcCCCCCCCC------CchhhhHHhhHHHHHHHH----HHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          118 VIIPAGVPRKPG------MTRDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       118 VIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      +|..||......      .+...++..|+..+....    +.+.+. ..+.||+++.-...          +  -||-.-
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG~----------~--~y~~~~  151 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAGR----------Y--PYPGGA  151 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEecccccc----------c--cCCCCc
Confidence            999999754311      123456788887665544    444432 35688887754331          1  277788


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +|+-|+....-|-.-|-+.+  ....|++..|-
T Consensus       152 vY~ATK~aV~~fs~~LR~e~--~g~~IRVt~I~  182 (246)
T COG4221         152 VYGATKAAVRAFSLGLRQEL--AGTGIRVTVIS  182 (246)
T ss_pred             cchhhHHHHHHHHHHHHHHh--cCCCeeEEEec
Confidence            88887654433333333333  23556655543

>PRK12744 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.005  Score=54.08  Aligned_cols=148  Identities=14%  Similarity=0.114  Sum_probs=80.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhH----HHHhhccccCcc-ee-eeeccCCHHHH------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV----TADISHMDTNAV-VR-GFLGQQQLEDA------  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~----~~dl~~~~~~~~-~~-~i~~t~d~~~a------  111 (270)
                      .+++.|+|++|.+|..++..|+.+|.  +|++++.+..  ...    ..++........ +. .+....+.++.      
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   85 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA   85 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence            35899999999999999999999998  8777765421  111    112221110000 00 01111122222      


Q ss_pred             -hCCCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEe-cCCCCCcHHHHHHHHHHhCC
Q 024248          112 -LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       112 -l~~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-sNPv~~~~~i~t~~~~~~sg  182 (270)
                       +...|++|+++|.....   ..+   ....+..|+.....+++.+.+.. +.+.++++ +.....             .
T Consensus        86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~-------------~  152 (257)
T PRK12744         86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA-------------F  152 (257)
T ss_pred             hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc-------------c
Confidence             24689999999863211   111   22345667766666666665432 33444433 332221             0


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .|..-.++.++.....+-+.+++.++
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~la~e~~  178 (257)
T PRK12744        153 TPFYSAYAGSKAPVEHFTRAASKEFG  178 (257)
T ss_pred             CCCcccchhhHHHHHHHHHHHHHHhC
Confidence            12234466766666678888998886

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.43  E-value=0.00024  Score=64.84  Aligned_cols=75  Identities=19%  Similarity=0.370  Sum_probs=49.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCCChhHH-------------HHhhccccCcceeeeeccCCHHHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVT-------------ADISHMDTNAVVRGFLGQQQLEDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~~~~~~-------------~dl~~~~~~~~~~~i~~t~d~~~al  112 (270)
                      +||+.||| |+||...+..++. .+.+ +|+++|++..+--+             .|....   ++-+.+..++|.+.++
T Consensus         2 ~kicciga-gyvggptcavia~kcp~i-~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---crgknlffstdiekai   76 (481)
T KOG2666|consen    2 VKICCIGA-GYVGGPTCAVIALKCPDI-EVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---CRGKNLFFSTDIEKAI   76 (481)
T ss_pred             ceEEEecC-cccCCcchheeeecCCce-EEEEEecCchHhhcccCCCCcccCCCHHHHHHH---hcCCceeeecchHHHh
Confidence            59999998 9999987654443 3333 99999998631100             111111   1111133467999999


Q ss_pred             CCCCEEEEcCCCCC
Q 024248          113 TGMDIVIIPAGVPR  126 (270)
Q Consensus       113 ~~ADvVIi~ag~~~  126 (270)
                      +.||+||+.+.+|-
T Consensus        77 ~eadlvfisvntpt   90 (481)
T KOG2666|consen   77 KEADLVFISVNTPT   90 (481)
T ss_pred             hhcceEEEEecCCc
Confidence            99999999987764

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0042  Score=54.51  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ..+|.|+||+|.+|..++..|+++|.  +|+++|++..
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~~   42 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDPE   42 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence            45899999999999999999999998  9999998753

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.43  E-value=0.0032  Score=57.97  Aligned_cols=150  Identities=13%  Similarity=0.092  Sum_probs=78.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee--eeccCC-------HHHHhC--
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG--FLGQQQ-------LEDALT--  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~--i~~t~d-------~~~al~--  113 (270)
                      ..+.|+||+|.+|..++..|+++|.  +|++++++++..  ...++........+..  +-.+++       +.+.+.  
T Consensus        54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            4799999999999999999999998  999999986421  2223322100011110  001112       222334  


Q ss_pred             CCCEEEEcCCCCCCC-----CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRKP-----GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~-----g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      +.|++|..||.....     +.+   -...+..|+.....+.+.+...   ...+.++++|.-...          ...+
T Consensus       132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~----------~~~~  201 (320)
T PLN02780        132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAI----------VIPS  201 (320)
T ss_pred             CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhc----------cCCC
Confidence            355999999864211     111   1234566766555555444321   234556666532210          0001


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .|..-.++.++.....+-+.++.+++
T Consensus       202 ~p~~~~Y~aSKaal~~~~~~L~~El~  227 (320)
T PLN02780        202 DPLYAVYAATKAYIDQFSRCLYVEYK  227 (320)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHh
Confidence            22223355554444456666666663

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.42  E-value=0.0013  Score=60.15  Aligned_cols=36  Identities=17%  Similarity=0.050  Sum_probs=32.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .++|+|+||+|.||..++..|+.+|.  +|++++++..
T Consensus         6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~   41 (322)
T PRK07453          6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLK   41 (322)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            44799999999999999999999997  9999998753

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=97.42  E-value=0.0015  Score=57.63  Aligned_cols=168  Identities=16%  Similarity=0.074  Sum_probs=80.9

Q ss_pred             EEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH----H-HHhhccc--------cCcceeeeec----------cCC
Q 024248           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV----T-ADISHMD--------TNAVVRGFLG----------QQQ  107 (270)
Q Consensus        51 IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~----~-~dl~~~~--------~~~~~~~i~~----------t~d  107 (270)
                      |+||+||+|+++...|+..+...+|+++-+......    . ..+.+..        ...++..+.+          ..+
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            689999999999998887765228999987653111    1 0111100        0112222211          123


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHH-HHHH----HHHHhC
Q 024248          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVP-IAAE----VFKKVG  181 (270)
Q Consensus       108 ~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~-i~t~----~~~~~s  181 (270)
                      +++..+.+|+||++|+.-. ...+..++...|+..++++++.+.+.... .++.+|.. +...-. -+.+    .-....
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~  158 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYISTAYVAGSRPGTIEEKVYPEEEDDL  158 (249)
T ss_dssp             HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS-TTT--SSS-HHH--EE
T ss_pred             hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCc-ceEEeccccccCCCCCcccccccccccccc
Confidence            4444578999999986432 12233456788999999999999854333 55555431 111000 0000    000000


Q ss_pred             CCCCCCeeee--chhhHHHHHHHHHHHhCCCCCccce-EEEc
Q 024248          182 TYDPKRLLGV--TMLDVVRANTFVAEVLGLDPREVDV-PVVG  220 (270)
Q Consensus       182 g~p~~kviG~--t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G  220 (270)
                      ..+....-|.  ++..++++....++..|++..-++. .|+|
T Consensus       159 ~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g  200 (249)
T PF07993_consen  159 DPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVG  200 (249)
T ss_dssp             E--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-
T ss_pred             hhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccc
Confidence            0111122233  7888888888888888998877776 5666

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PLN02712 arogenate dehydrogenase

Probab=97.42  E-value=0.0012  Score=66.82  Aligned_cols=67  Identities=16%  Similarity=0.162  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh-CCCCEEEEc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIP  121 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al-~~ADvVIi~  121 (270)
                      .+++|||+|||. |.+|..++..|...|+  +|+.+|++.....+.++.       +   ...+++++.+ ++||+||++
T Consensus        49 ~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~G-------v---~~~~d~~e~~~~~aDvViLa  115 (667)
T PLN02712         49 NTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSLG-------V---SFFLDPHDLCERHPDVILLC  115 (667)
T ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHcC-------C---EEeCCHHHHhhcCCCEEEEc
Confidence            355689999997 9999999999999887  999999874321111111       1   1134565644 579999998


Q ss_pred             C
Q 024248          122 A  122 (270)
Q Consensus       122 a  122 (270)
                      .
T Consensus       116 v  116 (667)
T PLN02712        116 T  116 (667)
T ss_pred             C
Confidence            6

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.41  E-value=0.00084  Score=61.16  Aligned_cols=64  Identities=19%  Similarity=0.337  Sum_probs=47.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||++||. |.+|+.++..|.+.|+  +|.++|+++.   ..++....  .     ....+..+++++||+||++..
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g--~-----~~~~s~~~~~~~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG--A-----VSVETARQVTEASDIIFIMVP   64 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC--C-----eecCCHHHHHhcCCEEEEeCC
Confidence            68999997 9999999999999998  9999998642   12232211  0     112356677899999999863

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.39  E-value=0.0037  Score=54.28  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ..++.|+|++|.+|..++..|+.+|.  .|+++|++..
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~~   40 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQE   40 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            34799999999999999999999998  8999998753

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.39  E-value=0.0081  Score=52.22  Aligned_cols=147  Identities=16%  Similarity=0.172  Sum_probs=75.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-eCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHHh-------CC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~al-------~~  114 (270)
                      +++.|+||+|.+|..++..|+++|.  +|+++ +++....  ...++........ +. .+....++++++       ..
T Consensus         5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999998  87764 4443221  1122221111000 00 011111222222       36


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      .|+||+.+|......   .+.   ...+..|......+++.+.++.   +.+.|+++|.....            .+.+.
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~~~~  150 (250)
T PRK08063         83 LDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSI------------RYLEN  150 (250)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhc------------cCCCC
Confidence            899999987542111   111   1134566665555665555432   33466666542210            01233


Q ss_pred             CCeeeechhhHHHHHHHHHHHh
Q 024248          186 KRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .-.++.++.....+-+.+++.+
T Consensus       151 ~~~y~~sK~a~~~~~~~~~~~~  172 (250)
T PRK08063        151 YTTVGVSKAALEALTRYLAVEL  172 (250)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555666666654

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.39  E-value=0.0037  Score=63.42  Aligned_cols=150  Identities=18%  Similarity=0.133  Sum_probs=81.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .++|.|+||+|.+|..++..|++.|.  +|+++|++....  ...++...........    +....++++++       
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~  491 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY  491 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999998  999999975321  1122221100000000    11111222333       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .+.|+||+++|......   .+.   ...+..|+.    ..+.+++.+++....+.++++|.....            .+
T Consensus       492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~------------~~  559 (676)
T TIGR02632       492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAV------------YA  559 (676)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhc------------CC
Confidence            36899999998643111   111   112333433    234555666554444555555532210            01


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGL  209 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v  209 (270)
                      .+..-.++.++.....+.+.++..++-
T Consensus       560 ~~~~~aY~aSKaA~~~l~r~lA~el~~  586 (676)
T TIGR02632       560 GKNASAYSAAKAAEAHLARCLAAEGGT  586 (676)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence            222334566666666777778887653

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.39  E-value=0.0012  Score=61.45  Aligned_cols=72  Identities=29%  Similarity=0.345  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.++|+|+||+|++|+.++..|+.+.-+.+|+++++++....  ..++....          ..++++++.++|+||+++
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~----------i~~l~~~l~~aDiVv~~t  223 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGK----------ILSLEEALPEADIVVWVA  223 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcccc----------HHhHHHHHccCCEEEECC
Confidence            456899999999999999999976422358999998643221  11222111          125678899999999998


Q ss_pred             CCCC
Q 024248          123 GVPR  126 (270)
Q Consensus       123 g~~~  126 (270)
                      +.+.
T Consensus       224 s~~~  227 (340)
T PRK14982        224 SMPK  227 (340)
T ss_pred             cCCc
Confidence            8763

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.39  E-value=0.0039  Score=54.01  Aligned_cols=148  Identities=13%  Similarity=0.079  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCH-------HHHhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL-------EDALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~-------~~al~~ADvV  118 (270)
                      ++++.|+||+|.+|..++..|+.+|.  +|++.|+++... ..++.+.......-.+....+.       .+.+...|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTHYPA-IDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchhH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEE
Confidence            34799999999999999999999998  999999875321 1122111000000001111111       1123458999


Q ss_pred             EEcCCCCCCC--C-Cc---hhhhHHhhHHHHH----HHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          119 IIPAGVPRKP--G-MT---RDDLFNINAGIVK----TLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       119 Ii~ag~~~~~--g-~~---r~~~~~~N~~i~~----~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      |+++|.....  . .+   ....+..|+....    .+.+.+++... .+.++++|....           . .+.+..-
T Consensus        79 v~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~-----------~-~~~~~~~  146 (236)
T PRK06483         79 IHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVV-----------E-KGSDKHI  146 (236)
T ss_pred             EECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhh-----------c-cCCCCCc
Confidence            9999863211  1 11   1223444544433    34444443221 345555543211           0 1233334


Q ss_pred             eeeechhhHHHHHHHHHHHhC
Q 024248          188 LLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~  208 (270)
                      .++.++..-..+-+.+++.++
T Consensus       147 ~Y~asKaal~~l~~~~a~e~~  167 (236)
T PRK06483        147 AYAASKAALDNMTLSFAAKLA  167 (236)
T ss_pred             cHHHHHHHHHHHHHHHHHHHC
Confidence            466655555567788888875

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.39  E-value=0.0015  Score=60.00  Aligned_cols=118  Identities=22%  Similarity=0.325  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hhHH---HHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~---~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|+|+ |-||+.+++.|.+.|.  .|+++-+.+. ....   +.+.+........ ...+++ .+....+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~-~~~~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTP-VVAATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccc-cccccC-hhhcCCCCEEEEEe
Confidence            79999998 9999999999999995  8888877542 1100   1111111100111 111223 36677999999997


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee-eec
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL-GVT  192 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi-G~t  192 (270)
                      -..+                ..+.++.+..+. |+++|+..=|-...     -+.+.+.  +|+++++ |+|
T Consensus        76 Ka~q----------------~~~al~~l~~~~~~~t~vl~lqNG~g~-----~e~l~~~--~~~~~il~G~~  124 (307)
T COG1893          76 KAYQ----------------LEEALPSLAPLLGPNTVVLFLQNGLGH-----EEELRKI--LPKETVLGGVT  124 (307)
T ss_pred             cccc----------------HHHHHHHhhhcCCCCcEEEEEeCCCcH-----HHHHHHh--CCcceEEEEEe
Confidence            3321                144566666655 56777777788772     2333443  5666564 454

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.015  Score=50.61  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      +++.|+||+|.+|.+++..|+++|.  +|++.+++..
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~   37 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTD   37 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence            4799999999999999999999997  9999998753

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.38  E-value=0.00084  Score=56.60  Aligned_cols=96  Identities=23%  Similarity=0.316  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .....+|+|+|. |.||..+|..+...|.  +|+.+|+......  ...+..       + ...++++.++.||+|+++.
T Consensus        33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~~-------~-~~~~l~ell~~aDiv~~~~   99 (178)
T PF02826_consen   33 ELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEFG-------V-EYVSLDELLAQADIVSLHL   99 (178)
T ss_dssp             -STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHTT-------E-EESSHHHHHHH-SEEEE-S
T ss_pred             ccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccccc-------c-eeeehhhhcchhhhhhhhh
Confidence            345679999997 9999999999999999  9999999754222  111111       1 1237889999999999987


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      .....   ++ .++  |    .+.+..+   .+++++||++-
T Consensus       100 plt~~---T~-~li--~----~~~l~~m---k~ga~lvN~aR  128 (178)
T PF02826_consen  100 PLTPE---TR-GLI--N----AEFLAKM---KPGAVLVNVAR  128 (178)
T ss_dssp             SSSTT---TT-TSB--S----HHHHHTS---TTTEEEEESSS
T ss_pred             ccccc---cc-eee--e----eeeeecc---ccceEEEeccc
Confidence            43211   11 111  2    2233333   36789999873

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK09242 tropinone reductase; Provisional

Probab=97.38  E-value=0.0028  Score=55.62  Aligned_cols=148  Identities=16%  Similarity=0.113  Sum_probs=78.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCC-------HHHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQ-------LEDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d-------~~~al  112 (270)
                      .+++.|+|++|.+|..++..|+.+|.  +|++++++.+..  ...++........+..    +....+       ..+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  999999875321  1223322100011110    111111       12234


Q ss_pred             CCCCEEEEcCCCCCC-C--CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          113 TGMDIVIIPAGVPRK-P--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ...|+||+++|.... +  ..+   ....+..|+.....+++.+.++   .+.+.++++|.....            .+.
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~------------~~~  154 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGL------------THV  154 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccC------------CCC
Confidence            568999999986321 1  111   1223455666555554444321   234566666543221            012


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHh
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      +..-.++.++.....+-+.+|..+
T Consensus       155 ~~~~~Y~~sK~a~~~~~~~la~e~  178 (257)
T PRK09242        155 RSGAPYGMTKAALLQMTRNLAVEW  178 (257)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHH
Confidence            222335555544445666666665

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.38  E-value=0.0022  Score=59.03  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +.++|+|+|. |.||..++..|...|+  +|..+|+......  ...         .+....++++.+++||+|+++...
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~--~~~---------~~~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP--GVQ---------SFAGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC--Cce---------eecccccHHHHHhcCCEEEECCCC
Confidence            4469999997 9999999999998898  9999997542110  000         011124688999999999998632


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .           ..+..++.  .+.+.+..|++++||++
T Consensus       201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             C-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence            1           11111221  23344444789999997

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.37  E-value=0.0034  Score=54.18  Aligned_cols=143  Identities=16%  Similarity=0.128  Sum_probs=77.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeecc-CCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t-~d~~~al~~ADvVIi~ag~~  125 (270)
                      +++.|+|++|.+|.+++..|+++|+  +|++++++.......++...  ...   +... ....+.+...|+||.++|..
T Consensus         6 k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~--~~D---~~~~~~~~~~~~~~id~lv~~ag~~   78 (235)
T PRK06550          6 KTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPDLSGNFHFL--QLD---LSDDLEPLFDWVPSVDILCNTAGIL   78 (235)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccccCCcEEEE--ECC---hHHHHHHHHHhhCCCCEEEECCCCC
Confidence            4799999999999999999999998  99999987532100000000  000   0000 01122345789999999853


Q ss_pred             C--CC--CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhh
Q 024248          126 R--KP--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       126 ~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                      .  .+  ..+   ....+..|+.....+++.+...   ...+.++++|.....            .+.+..-.++.++..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~~~Y~~sK~a  146 (235)
T PRK06550         79 DDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASF------------VAGGGGAAYTASKHA  146 (235)
T ss_pred             CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc------------cCCCCCcccHHHHHH
Confidence            2  11  111   1234566766555555555432   233556655532220            012223345555444


Q ss_pred             HHHHHHHHHHHhC
Q 024248          196 VVRANTFVAEVLG  208 (270)
Q Consensus       196 t~r~~~~lA~~l~  208 (270)
                      ...+.+.+++.++
T Consensus       147 ~~~~~~~la~~~~  159 (235)
T PRK06550        147 LAGFTKQLALDYA  159 (235)
T ss_pred             HHHHHHHHHHHhh
Confidence            4456677777774

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0033  Score=54.52  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +++.|+|++|.+|..++..|+++|.  +|++++++.
T Consensus         7 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   40 (241)
T PRK07454          7 PRALITGASSGIGKATALAFAKAGW--DLALVARSQ   40 (241)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3799999999999999999999998  999999875

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.37  E-value=0.00087  Score=62.20  Aligned_cols=65  Identities=28%  Similarity=0.339  Sum_probs=47.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~-~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      -..+||+|||. |.+|..+|..|+ ..|+  +|..+|+...... .+.           +....++++++++||+|+++.
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~-~~~-----------~~~~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        144 IKDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA-ATY-----------VDYKDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH-Hhh-----------ccccCCHHHHHHhCCEEEEeC
Confidence            45679999998 999999999884 3566  9999998643211 110           112347889999999999987


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      .
T Consensus       209 P  209 (332)
T PRK08605        209 P  209 (332)
T ss_pred             C
Confidence            3

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=97.36  E-value=0.008  Score=52.90  Aligned_cols=156  Identities=13%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceeee-eccCCH---HHH-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGF-LGQQQL---EDA-------  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~i-~~t~d~---~~a-------  111 (270)
                      .+++.|+||+|.+|..++..|+.+|.  .|++..++....   ...++....  ..+..+ ...+|.   ++.       
T Consensus         7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~   82 (261)
T PRK08936          7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVKE   82 (261)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  888877754211   112222111  111100 011122   111       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cch---hhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          112 LTGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      +...|++|+.+|......   .+.   ...+..|+...    +.+++.+.+....+.++++|.-...            .
T Consensus        83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~------------~  150 (261)
T PRK08936         83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ------------I  150 (261)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc------------C
Confidence            235799999998643211   111   12345664433    4455555554445666666542210            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ..|..-.++.++.....+-+.++..+.  +..|++.++
T Consensus       151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v  186 (261)
T PRK08936        151 PWPLFVHYAASKGGVKLMTETLAMEYA--PKGIRVNNI  186 (261)
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            233334566654444456666766663  334554444

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.36  E-value=0.0017  Score=56.71  Aligned_cols=68  Identities=19%  Similarity=0.320  Sum_probs=44.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||. |.+|..+...+... .-++-+.+||++.++...  +...-. .     ...+++.+.+.+.|++|.+|+
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~--~~~~~~-~-----~~~s~ide~~~~~DlvVEaAS   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKE--LEASVG-R-----RCVSDIDELIAEVDLVVEAAS   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHH--HHhhcC-C-----CccccHHHHhhccceeeeeCC
Confidence            68999997 99999999877765 235678899998654322  221100 0     112356565677777777763

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.35  E-value=0.0049  Score=56.08  Aligned_cols=101  Identities=24%  Similarity=0.285  Sum_probs=58.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-h--hHHHHhhccccCcceee----eeccCCHHHH------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTNAVVRG----FLGQQQLEDA------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~--~~~~dl~~~~~~~~~~~----i~~t~d~~~a------l  112 (270)
                      .+++.|+||+|.+|..++..|+.+|.  .|++.|+... .  ..+.++....  ..+..    +....+.++.      +
T Consensus        12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~~   87 (306)
T PRK07792         12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVGL   87 (306)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  9999997542 1  1122232211  11110    1101112121      2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI  150 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i  150 (270)
                      ...|++|+++|......   .+   ....+..|+.....+++.+
T Consensus        88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~  131 (306)
T PRK07792         88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNA  131 (306)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence            46899999998754321   11   2234566666555555543

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0055  Score=53.66  Aligned_cols=156  Identities=18%  Similarity=0.161  Sum_probs=82.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHH-------HhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLED-------ALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~-------al~  113 (270)
                      +++.|+|++|.+|..++..|+..|.  +|++.+++....  ...++....  ..+..    +....+.++       .+.
T Consensus        10 k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867         10 KRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999998  999999875321  112222211  11111    111111222       234


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|++|+++|......   .+   ....+..|+.....+.+.+    .+....+.+++++.-..           .....
T Consensus        86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~-----------~~~~~  154 (253)
T PRK05867         86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSG-----------HIINV  154 (253)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHh-----------cCCCC
Confidence            7899999998643111   11   1223456665544444444    33222355665542111           00011


Q ss_pred             CCC-CeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          184 DPK-RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       184 p~~-kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      |.. -.++.++..-..+-+.+++.+.  +..|++..+
T Consensus       155 ~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~vn~i  189 (253)
T PRK05867        155 PQQVSHYCASKAAVIHLTKAMAVELA--PHKIRVNSV  189 (253)
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHh--HhCeEEEEe
Confidence            212 2355555444567777777764  334544333

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0068  Score=52.57  Aligned_cols=151  Identities=17%  Similarity=0.141  Sum_probs=79.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccc-cCcc-ee-eeec--cCCHHH-------H
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMD-TNAV-VR-GFLG--QQQLED-------A  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~-~~~~-~~-~i~~--t~d~~~-------a  111 (270)
                      .++|.|+|++|.+|..++..|+.+|.  +|++++++....  ...++.... .... +. .+..  ..++++       .
T Consensus         6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            35899999999999999999999998  999999976321  112221110 0000 00 0110  011211       1


Q ss_pred             h-CCCCEEEEcCCCCCC--C-C-Cch---hhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          112 L-TGMDIVIIPAGVPRK--P-G-MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       112 l-~~ADvVIi~ag~~~~--~-g-~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                      + ...|+||+++|....  + . .+.   ...+..|+.....+++.+.+.   ...+.+++++.....            
T Consensus        84 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~------------  151 (239)
T PRK08703         84 TQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE------------  151 (239)
T ss_pred             hCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc------------
Confidence            2 467999999985321  1 1 111   123456665544444444322   234555555532221            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCC
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLD  210 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~  210 (270)
                      .+.+..-.++.++.....+.+.++..++-.
T Consensus       152 ~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~  181 (239)
T PRK08703        152 TPKAYWGGFGASKAALNYLCKVAADEWERF  181 (239)
T ss_pred             cCCCCccchHHhHHHHHHHHHHHHHHhccC
Confidence            012222335665544456777778877543

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.33  E-value=0.0017  Score=57.86  Aligned_cols=68  Identities=16%  Similarity=0.223  Sum_probs=46.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|||+ |.+|+.++..|...++ ..++.++|++.+..  ..+...  ....   ..+++.++.+++||+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~--~~l~~~--~~~~---~~~~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIA--ARLAER--FPKV---RIAKDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHH--HHHHHH--cCCc---eEeCCHHHHHHhCCEEEEEe
Confidence            68999997 9999999999988775 23567787754322  222221  0111   11346667788999999986

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0071  Score=55.95  Aligned_cols=116  Identities=17%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHH-------hCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDA-------LTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~  114 (270)
                      .++|+|+||+|.+|..++..|+.+|.  +|+++++++...  ...++........ +. .+....+++++       +..
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            34799999999999999999999998  999999875321  1122222111000 00 11111122222       246


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHH----HHHHhHhCCCCEEEEecC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~sN  164 (270)
                      .|++|.++|......   .+   ....+..|+.....+    ++.+.+. ..+.+|+++.
T Consensus        85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~-~~g~iV~isS  143 (330)
T PRK06139         85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQ-GHGIFINMIS  143 (330)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHc-CCCEEEEEcC
Confidence            799999998643211   11   123455665544443    4444432 2456666553

>PLN02503 fatty acyl-CoA reductase 2

Probab=97.32  E-value=0.0027  Score=63.51  Aligned_cols=107  Identities=16%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCCh--h--HH-HHhhcc-----------cc-----Ccceeeee
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP--G--VT-ADISHM-----------DT-----NAVVRGFL  103 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~--~--~~-~dl~~~-----------~~-----~~~~~~i~  103 (270)
                      .++|.|+||+||+|..++..|+..+ -+.+|+++.+....  +  .. .++.+.           ..     ..++..+.
T Consensus       119 ~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v~  198 (605)
T PLN02503        119 GKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPVV  198 (605)
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEEE
Confidence            5789999999999999999888654 34688888775421  1  11 112110           00     01121111


Q ss_pred             c--c--------CCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh
Q 024248          104 G--Q--------QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC  153 (270)
Q Consensus       104 ~--t--------~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~  153 (270)
                      +  +        .+++...++.|+||++|+... ...+.......|+....++++.+.+.
T Consensus       199 GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~  257 (605)
T PLN02503        199 GNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKC  257 (605)
T ss_pred             eeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHc
Confidence            1  1        123344568999999987643 23334556788999999999998765

>PRK07775 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0081  Score=53.50  Aligned_cols=147  Identities=13%  Similarity=0.062  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-H-HHhhccccCcceeeee-ccCC---HHHH-------
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-T-ADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~-~dl~~~~~~~~~~~i~-~t~d---~~~a-------  111 (270)
                      +.+.+.|+||+|++|.+++..|+.+|.  +|++++++..... . .++....  ..+..+. ..++   ++++       
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF--PVALGARRVEKCEELVDKIRADG--GEAVAFPLDVTDPDSVKSFVAQAEEA   84 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            334799999999999999999999998  8999988643111 1 1121110  0111000 1112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      +...|+||+++|......   .+   ..+.+..|+.....+.+.+.+.   ...+.|+++|....           . .+
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~-----------~-~~  152 (274)
T PRK07775         85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVA-----------L-RQ  152 (274)
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHh-----------c-CC
Confidence            346799999998643111   11   1223456666555555554321   12345555553211           0 12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHh
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .|..-.++.++.....+.+.+++.+
T Consensus       153 ~~~~~~Y~~sK~a~~~l~~~~~~~~  177 (274)
T PRK07775        153 RPHMGAYGAAKAGLEAMVTNLQMEL  177 (274)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHh
Confidence            2333345565555556667777665

>PRK06123 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.012  Score=51.09  Aligned_cols=146  Identities=15%  Similarity=0.088  Sum_probs=77.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--h-HHHHhhccccCcc-ee-eeeccCCHHHHh-------CCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTNAV-VR-GFLGQQQLEDAL-------TGM  115 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~-~~~dl~~~~~~~~-~~-~i~~t~d~~~al-------~~A  115 (270)
                      .++|+|++|++|+.++..|+.+|.  .|++.+.....  . ...++........ +. .+....++++++       ...
T Consensus         4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            589999999999999999999998  78887754321  1 1112221111110 00 011111222332       367


Q ss_pred             CEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHhC------CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          116 DIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC------PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       116 DvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~------p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      |+||+++|......    .+   -...+..|+.....+.+.+.+..      .++.++++|.....            .+
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~  149 (248)
T PRK06123         82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAAR------------LG  149 (248)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhc------------CC
Confidence            99999998643211    11   12345677766555554443321      13456666653321            01


Q ss_pred             CCCCC-eeeechhhHHHHHHHHHHHh
Q 024248          183 YDPKR-LLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       183 ~p~~k-viG~t~ldt~r~~~~lA~~l  207 (270)
                      .|... .++.++.....+.+.+++.+
T Consensus       150 ~~~~~~~Y~~sKaa~~~~~~~la~~~  175 (248)
T PRK06123        150 SPGEYIDYAASKGAIDTMTIGLAKEV  175 (248)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHh
Confidence            22111 25665555556777788876

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.30  E-value=0.0056  Score=58.65  Aligned_cols=117  Identities=21%  Similarity=0.237  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHH-------hCCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDA-------LTGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~ADv  117 (270)
                      ..++.|+|++|.+|..++..|+.+|.  +|+++|+........++........+. .+....+.++.       ....|+
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            35799999999999999999999998  999999854322122221110000010 01111111111       235899


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecC
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sN  164 (270)
                      ||+++|......   .+   ....+..|+.....+.+.+...   .+.+.|+++|.
T Consensus       288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            999998653211   11   2234567777777777777652   23466776664

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.29  E-value=0.0022  Score=57.33  Aligned_cols=90  Identities=14%  Similarity=0.201  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCc--cEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~--~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .|||+|||+ |.+|++++..|...+..  .+++.+|+++..     + .      .   ....+..++++++|+||++. 
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-~------~---~~~~~~~~~~~~~D~Vilav-   65 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-P------F---VYLQSNEELAKTCDIIVLAV-   65 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-C------e---EEeCChHHHHHhCCEEEEEe-
Confidence            489999997 99999999999887743  258888876432     0 0      0   11235557788999999985 


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                       +              ...+.++++.+..+-++..+|.+.+-+.
T Consensus        66 -k--------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 -K--------------PDLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             -C--------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence             1              1223455555654333344555555554

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.29  E-value=0.0041  Score=56.44  Aligned_cols=65  Identities=22%  Similarity=0.274  Sum_probs=44.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH---H--HHhhccccCcceeeeeccCCH-HHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---T--ADISHMDTNAVVRGFLGQQQL-EDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~---~--~dl~~~~~~~~~~~i~~t~d~-~~al~~ADvVI  119 (270)
                      .++|+|+|. |.+|..++..+...|+  .+.+++++...+.   +  +++.+.          .+.+. .++.++||+||
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~----------~~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDE----------LTVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCcccc----------cccchhhhhcccCCEEE
Confidence            468999997 9999999999999999  6666666543221   1  122221          11222 46788999999


Q ss_pred             EcCC
Q 024248          120 IPAG  123 (270)
Q Consensus       120 i~ag  123 (270)
                      +++.
T Consensus        70 vavP   73 (279)
T COG0287          70 VAVP   73 (279)
T ss_pred             Eecc
Confidence            9973

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.29  E-value=0.0031  Score=54.34  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      .+..||+|+|+ |-+|+.++..|+..|. ++|+++|.+
T Consensus        19 L~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            44568999998 9999999999999997 589999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.01  Score=52.44  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCCh-h--HHHHhhccccCcceee----eeccCCH----HHHh
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP-G--VTADISHMDTNAVVRG----FLGQQQL----EDAL  112 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~-~--~~~dl~~~~~~~~~~~----i~~t~d~----~~al  112 (270)
                      ++++|.|+||+|.+|..++..|+.+| .  .|+++++++.. .  ...++.... ...+..    +....+.    +++.
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence            34589999999999999999998885 6  99999987642 1  122333211 001111    1111122    1222


Q ss_pred             --CCCCEEEEcCCCCCCCCCc---h---hhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecC
Q 024248          113 --TGMDIVIIPAGVPRKPGMT---R---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       113 --~~ADvVIi~ag~~~~~g~~---r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sN  164 (270)
                        .+.|++|.++|........   .   .+.+..|+...    +.+.+.+.+.. .+.++++|.
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~-~~~iv~isS  146 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIAMSS  146 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC-CceEEEEec
Confidence              3799999988765321111   1   12356665433    45666666543 355555553

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.27  E-value=0.0032  Score=58.44  Aligned_cols=68  Identities=18%  Similarity=0.149  Sum_probs=48.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ..+.+||+|||. |.+|.+++..|...|+  +|+..++......  +......   +   . ..+.+++++.||+|+++.
T Consensus        14 ~L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~--~~A~~~G---~---~-~~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         14 LIKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSW--KKAEADG---F---E-VLTVAEAAKWADVIMILL   81 (330)
T ss_pred             hhCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhH--HHHHHCC---C---e-eCCHHHHHhcCCEEEEcC
Confidence            345679999998 9999999999999998  8888877543211  1111110   1   1 126778999999999986

>PRK06114 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0085  Score=52.59  Aligned_cols=34  Identities=29%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +++.|+|++|.+|..++..|++.|.  +|++.|++.
T Consensus         9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~   42 (254)
T PRK06114          9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT   42 (254)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            4799999999999999999999998  999999865

>PRK08017 oxidoreductase; Provisional

Probab=97.26  E-value=0.01  Score=51.84  Aligned_cols=33  Identities=21%  Similarity=0.184  Sum_probs=30.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +|.|+||+|++|..++..|+++|.  +|++++++.
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~   36 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRRGY--RVLAACRKP   36 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            799999999999999999999998  899999875

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.25  E-value=0.0017  Score=59.30  Aligned_cols=57  Identities=21%  Similarity=0.331  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|||.+|.||..++..|...|.  .|+++++.                       |.++++.++.||+||.+.|
T Consensus       157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~-----------------------t~~l~e~~~~ADIVIsavg  211 (301)
T PRK14194        157 LTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSR-----------------------STDAKALCRQADIVVAAVG  211 (301)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhcCCEEEEecC
Confidence            4467999999967999999999999998  99999753                       1256788899999999987


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       212 ~~  213 (301)
T PRK14194        212 RP  213 (301)
T ss_pred             Ch
Confidence            65

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.25  E-value=0.0014  Score=52.89  Aligned_cols=77  Identities=21%  Similarity=0.265  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+..|++|+|+ |-+|..++..|...|. ++|++++++..++  .+|........+.. ...+++.+.+..+|+||.+.+
T Consensus        10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra--~~l~~~~~~~~~~~-~~~~~~~~~~~~~DivI~aT~   84 (135)
T PF01488_consen   10 LKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERA--EALAEEFGGVNIEA-IPLEDLEEALQEADIVINATP   84 (135)
T ss_dssp             GTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHH--HHHHHHHTGCSEEE-EEGGGHCHHHHTESEEEE-SS
T ss_pred             cCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHH--HHHHHHcCccccce-eeHHHHHHHHhhCCeEEEecC
Confidence            34569999998 9999999999999987 4799999975432  22222111111221 223466677899999999976


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus        85 ~~   86 (135)
T PF01488_consen   85 SG   86 (135)
T ss_dssp             TT
T ss_pred             CC
Confidence            55

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.24  E-value=0.00077  Score=59.01  Aligned_cols=105  Identities=19%  Similarity=0.270  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh------hH---HHHhhcccc-C------cceeeeeccCCHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GV---TADISHMDT-N------AVVRGFLGQQQLED  110 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~------~~---~~dl~~~~~-~------~~~~~i~~t~d~~~  110 (270)
                      -||+|+|. |.+|+..|.+++..|+  +|.|||+.+..      ..   ..+|..... .      .-+..+++|++++|
T Consensus         4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            48999995 9999999999999999  99999997631      11   112222111 1      11223577889999


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcH
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTV  170 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~  170 (270)
                      .+++|=.|=.|+              .+.+...+++.+++.+.. |..  |..|..+..+.
T Consensus        81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~mp  125 (313)
T KOG2305|consen   81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT--ILASSTSTFMP  125 (313)
T ss_pred             HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce--EEeccccccCh
Confidence            999985443332              334566788888888876 443  33555555443

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=97.24  E-value=0.0094  Score=51.83  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=28.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~   80 (270)
                      ++|.|+||+|.+|..++..|+.+|.  +|++.+.
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            4799999999999999999999998  8877654

>PLN03139 formate dehydrogenase; Provisional

Probab=97.24  E-value=0.0039  Score=59.09  Aligned_cols=95  Identities=23%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|+|. |.||..++..|...|+  +|..+|+........  ....       +....++++.++.||+|+++..
T Consensus       197 L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~g-------~~~~~~l~ell~~sDvV~l~lP  264 (386)
T PLN03139        197 LEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KETG-------AKFEEDLDAMLPKCDVVVINTP  264 (386)
T ss_pred             CCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhcC-------ceecCCHHHHHhhCCEEEEeCC
Confidence            45679999997 9999999999998888  999999864211111  1110       0112478889999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ..    .+-..++  |    .+   .+....|++++|+++
T Consensus       265 lt----~~T~~li--~----~~---~l~~mk~ga~lIN~a  291 (386)
T PLN03139        265 LT----EKTRGMF--N----KE---RIAKMKKGVLIVNNA  291 (386)
T ss_pred             CC----HHHHHHh--C----HH---HHhhCCCCeEEEECC
Confidence            21    1111111  1    22   333334788999886

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=97.22  E-value=0.0054  Score=53.03  Aligned_cols=34  Identities=21%  Similarity=0.113  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .++.|+|++|.+|..++..|+++|.  .|++.+++.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            3789999999999999999999997  999999874

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=97.22  E-value=0.011  Score=51.24  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=27.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEe
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD   79 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD   79 (270)
                      +.+.|+|++|.+|..++..|++.|.  +|++..
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~   34 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC   34 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence            3689999999999999999999998  887754

>PRK06484 short chain dehydrogenase; Validated

Probab=97.21  E-value=0.0075  Score=58.69  Aligned_cols=147  Identities=15%  Similarity=0.160  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|++.....  ..++...  ...+. .+....++++.       +...
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDE--HLSVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc--eeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999999999998  9999998753211  1111100  00000 01111112222       2457


Q ss_pred             CEEEEcCCCCCC--C--CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          116 DIVIIPAGVPRK--P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       116 DvVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      |++|+++|....  +  ..+   ....+..|+.....+.+.+..+- ..+.|+++|.....            .+.|..-
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~  412 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL------------LALPPRN  412 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc------------CCCCCCc
Confidence            999999986421  1  111   23346677776666666655432 34677777654331            1234334


Q ss_pred             eeeechhhHHHHHHHHHHHhC
Q 024248          188 LLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~  208 (270)
                      .++.++..-..+-+.+++.++
T Consensus       413 ~Y~asKaal~~l~~~la~e~~  433 (520)
T PRK06484        413 AYCASKAAVTMLSRSLACEWA  433 (520)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh
Confidence            466655555567777777764

>PRK09186 flagellin modification protein A; Provisional

Probab=97.21  E-value=0.0023  Score=55.89  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .++|.|+||+|.+|..++..|+..|+  +|++.+++..
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~   39 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKE   39 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChH
Confidence            45899999999999999999999998  9999988753

>PRK08324 short chain dehydrogenase; Validated

Probab=97.21  E-value=0.0077  Score=61.10  Aligned_cols=148  Identities=20%  Similarity=0.188  Sum_probs=78.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee--eeeccCCHHHHh-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~--~i~~t~d~~~al-------~~  114 (270)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++....  ...++... ......  .+....++++++       .+
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~  498 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFGG  498 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999998  999999975321  11122211 000000  011111122222       36


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|+||.++|......   .+   ....+..|+.....+++.    +++....+.|+++|.-...            .+.+
T Consensus       499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~------------~~~~  566 (681)
T PRK08324        499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAV------------NPGP  566 (681)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCcccc------------CCCC
Confidence            899999998643211   11   122345566555555444    4433223566666532221            0112


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhC
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ..-.++.++.....+.+.++..++
T Consensus       567 ~~~~Y~asKaa~~~l~~~la~e~~  590 (681)
T PRK08324        567 NFGAYGAAKAAELHLVRQLALELG  590 (681)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhc
Confidence            222344444444456666776664

>PLN02712 arogenate dehydrogenase

Probab=97.21  E-value=0.0029  Score=64.06  Aligned_cols=67  Identities=18%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC-CCCEEEEc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIP  121 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~-~ADvVIi~  121 (270)
                      ..++|||+|||. |.+|..++..|...|+  +|+.+|++.....+.++  .     +   ...+++++.++ .+|+||++
T Consensus       366 ~~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~--G-----v---~~~~~~~el~~~~aDvVILa  432 (667)
T PLN02712        366 DGSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL--G-----V---SYFSDADDLCEEHPEVILLC  432 (667)
T ss_pred             CCCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc--C-----C---eEeCCHHHHHhcCCCEEEEC
Confidence            456789999997 9999999999998887  99999987432111111  1     1   11346666665 59999998


Q ss_pred             C
Q 024248          122 A  122 (270)
Q Consensus       122 a  122 (270)
                      .
T Consensus       433 v  433 (667)
T PLN02712        433 T  433 (667)
T ss_pred             C
Confidence            6

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0037  Score=53.70  Aligned_cols=113  Identities=16%  Similarity=0.178  Sum_probs=64.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHH---HhC--CCCEEEEcC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLED---ALT--GMDIVIIPA  122 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~---al~--~ADvVIi~a  122 (270)
                      ++.|+|++|.+|..++..|+..|.  +|+++|++....  .++...........+....++++   .+.  ..|+||+++
T Consensus         3 ~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~a   78 (222)
T PRK06953          3 TVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVA   78 (222)
T ss_pred             eEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECC
Confidence            689999999999999999999998  999999875321  12221110000000111112222   133  479999998


Q ss_pred             CCCCCC-----CCc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecC
Q 024248          123 GVPRKP-----GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (270)
Q Consensus       123 g~~~~~-----g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sN  164 (270)
                      |.....     ..+   ....+..|+.....+++.+.++-  ..+.+++++.
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS  130 (222)
T PRK06953         79 GVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS  130 (222)
T ss_pred             CcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence            864211     111   23346677777777776665432  2345555543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.18  E-value=0.0012  Score=53.74  Aligned_cols=74  Identities=20%  Similarity=0.297  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      .+.++|+|+|+ |.+|..++..|...+ ..+|+++|++.....  ..++...  .  +.  ....+.++.++++|+||.+
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~--~~--~~~~~~~~~~~~~Dvvi~~   88 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--G--IA--IAYLDLEELLAEADLIINT   88 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--c--cc--eeecchhhccccCCEEEeC
Confidence            44579999998 999999999998886 348999999754321  1222211  0  00  0123555668999999999


Q ss_pred             CCCC
Q 024248          122 AGVP  125 (270)
Q Consensus       122 ag~~  125 (270)
                      ....
T Consensus        89 ~~~~   92 (155)
T cd01065          89 TPVG   92 (155)
T ss_pred             cCCC
Confidence            8654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=97.17  E-value=0.011  Score=51.10  Aligned_cols=114  Identities=15%  Similarity=0.142  Sum_probs=62.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-h--hHHHHhhccccCcceee----eeccCCHHHH-------hCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTNAVVRG----FLGQQQLEDA-------LTG  114 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~--~~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l~~  114 (270)
                      |.|+||+|++|..++..|+++|.  +|+++++... .  ....++.+..  ..+..    +....+++++       ...
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999998  8988876532 1  1112232211  11111    1111112222       234


Q ss_pred             CCEEEEcCCCCCCCC---C---chhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCC
Q 024248          115 MDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPV  166 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv  166 (270)
                      .|.+|.++|......   .   +....+..|+.....+.+.+    .+..+.+.++++|...
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            689999988643211   1   12335667766655555543    1223445666666543

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=97.17  E-value=0.0036  Score=56.93  Aligned_cols=96  Identities=16%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      .++|.-||- |.+|++++..|+..|+  .|+.||++..  ...+|.+...  .+     ..++.|..+++|+||...+.+
T Consensus        35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~~--k~~~f~~~Ga--~v-----~~sPaeVae~sDvvitmv~~~  102 (327)
T KOG0409|consen   35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTKD--KCKEFQEAGA--RV-----ANSPAEVAEDSDVVITMVPNP  102 (327)
T ss_pred             cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcHH--HHHHHHHhch--hh-----hCCHHHHHhhcCEEEEEcCCh
Confidence            568999997 9999999999999999  9999999743  3344554421  11     235678889999999987644


Q ss_pred             CC----------------CCCch-hhhHHhhHHHHHHHHHHHhHh
Q 024248          126 RK----------------PGMTR-DDLFNINAGIVKTLCEGIAKC  153 (270)
Q Consensus       126 ~~----------------~g~~r-~~~~~~N~~i~~~i~~~i~~~  153 (270)
                      ..                ++..- .|.-...-...+++.+.++..
T Consensus       103 ~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~  147 (327)
T KOG0409|consen  103 KDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK  147 (327)
T ss_pred             HhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC
Confidence            11                11111 122233345678888888753

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.15  E-value=0.0091  Score=60.98  Aligned_cols=93  Identities=19%  Similarity=0.249  Sum_probs=60.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      .||+|||+ |.+|..++..+...|+..+|+++|+++.....  .......  .   ...++++++++++|+||++...  
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~--a~~~g~~--~---~~~~~~~~~~~~aDvVilavp~--   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLEL--AVSLGVI--D---RGEEDLAEAVSGADVIVLAVPV--   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHH--HHHCCCC--C---cccCCHHHHhcCCCEEEECCCH--
Confidence            58999997 99999999999988854489999997643211  1111100  0   1234677889999999998631  


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s  163 (270)
                                    ..+.++++.+.++. ++.+|+.++
T Consensus        74 --------------~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         74 --------------LAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             --------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence                          12345555565543 455555444

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.14  E-value=0.0033  Score=61.41  Aligned_cols=72  Identities=17%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC---CCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~---ADvVIi~a  122 (270)
                      .++|++||. |.+|+.+|..|+..|+  +|+++|+..++.  .++.+.........+....+++++++.   +|+||++.
T Consensus         6 ~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k~--~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v   80 (493)
T PLN02350          6 LSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV   80 (493)
T ss_pred             CCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence            358999997 9999999999999999  999999975432  223221000000001123456666654   99999986

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.006  Score=55.18  Aligned_cols=117  Identities=22%  Similarity=0.248  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcce-eeeeccCCHHH-------HhCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVV-RGFLGQQQLED-------ALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~-~~i~~t~d~~~-------al~~A  115 (270)
                      ..++.|+||+|.+|..++..|+..|.  +|++++++....  ...++........+ -.+....+.++       .+...
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   86 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI   86 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            34799999999999999999999998  999999875321  11222211000000 00111111111       23468


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecC
Q 024248          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sN  164 (270)
                      |+||.++|.....   ..+   -...+..|+.....+++.+....  ..+.|+++|.
T Consensus        87 d~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         87 DVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             CEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            9999999864311   111   12345567666655555554321  2456666653

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.09  E-value=0.0012  Score=57.98  Aligned_cols=74  Identities=16%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      |+|+|+||||++|++++..|+.+++  +|+..-++........   .........+.....+..+++|.|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence            6899999999999999999999988  8888887654322222   111111111233445777889999999887543

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=97.08  E-value=0.0036  Score=60.80  Aligned_cols=95  Identities=14%  Similarity=0.191  Sum_probs=58.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc-ccCcceeeeeccCCHHH---HhCCCCEEEEcCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLED---ALTGMDIVIIPAG  123 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~-~~~~~~~~i~~t~d~~~---al~~ADvVIi~ag  123 (270)
                      +|+|||. |.+|.++|..|+..|+  +|+++|+++...  .++... .....+   ....++++   .++.+|+||+++.
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~~--~~l~~~~~~g~~~---~~~~s~~e~v~~l~~~dvIil~v~   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEKT--DEFLAEHAKGKKI---VGAYSIEEFVQSLERPRKIMLMVK   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHHH--HHHHhhccCCCCc---eecCCHHHHHhhcCCCCEEEEECC
Confidence            4899997 9999999999999999  999999975432  223221 000011   11223444   4467999999862


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNP  165 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNP  165 (270)
                      .+               +.+.++++.+..+ .++.+||-.||-
T Consensus        73 ~~---------------~~v~~Vi~~l~~~L~~g~iIID~gns  100 (467)
T TIGR00873        73 AG---------------APVDAVINQLLPLLEKGDIIIDGGNS  100 (467)
T ss_pred             Cc---------------HHHHHHHHHHHhhCCCCCEEEECCCc
Confidence            21               1123344444443 356777777764

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=97.07  E-value=0.023  Score=48.96  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=28.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~   80 (270)
                      .+.|+|++|.+|..++..|+..|.  +|+++.+
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r   32 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG   32 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            578999999999999999999998  8888877

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0064  Score=53.24  Aligned_cols=146  Identities=12%  Similarity=0.055  Sum_probs=79.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------hC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------LT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l~  113 (270)
                      +++.|+|++|.+|..++..|++.|.  .|+++|++....  ...++....  ..+..    +....++++.       +.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999998  999999875321  112222111  11111    1111112221       24


Q ss_pred             CCCEEEEcCCCCCC-C--CCch---hhhHHhhHHHHHHHHHHHhH----hCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGIAK----CCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|++|.++|.... +  ..+.   ...+..|+.....+.+.+.+    ....+.++++|.-..           .. ..
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~-----------~~-~~  145 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYA-----------WD-AG  145 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhh-----------cc-CC
Confidence            67999999875321 1  1121   23456676655555555533    233466776663211           00 01


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +..-.++.++.....+-+.+|..+.
T Consensus       146 ~~~~~Y~~sKaa~~~~~~~la~e~~  170 (252)
T PRK07677        146 PGVIHSAAAKAGVLAMTRTLAVEWG  170 (252)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhC
Confidence            1111244544444556777777764

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=97.07  E-value=0.029  Score=49.62  Aligned_cols=32  Identities=25%  Similarity=0.227  Sum_probs=28.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      .+.|+||+|.+|..++..|+++|.  +|++.+++
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            688999999999999999999998  89887654

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.07  E-value=0.0034  Score=56.86  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=45.4

Q ss_pred             EEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        51 IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +||. |.+|..++..|+..|+  +|+++|+++..  ..++....       ...+.++++++++||+||++..
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g-------~~~~~s~~~~~~~advVil~vp   61 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG-------AQAAASPAEAAEGADRVITMLP   61 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC-------CeecCCHHHHHhcCCEEEEeCC
Confidence            5797 9999999999999998  99999997542  22232211       1124467788999999999874

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.06  E-value=0.0032  Score=62.08  Aligned_cols=66  Identities=23%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      -..++|+|+|. |.+|..+|..|...|+  +|+.||+........++.       ..   .. ++++.++.||+|+++..
T Consensus       138 l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~---~~-~l~ell~~aDiV~l~lP  203 (526)
T PRK13581        138 LYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQLG-------VE---LV-SLDELLARADFITLHTP  203 (526)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------CE---EE-cHHHHHhhCCEEEEccC
Confidence            44568999998 9999999999998898  999999853322221111       11   12 57888999999999864

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.06  E-value=0.004  Score=61.36  Aligned_cols=67  Identities=22%  Similarity=0.290  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|+|. |.+|..+|..|...|+  +|+.||+........++.       .   ...+++++.++.||+|+++..
T Consensus       136 l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~---~~~~~l~ell~~aDvV~l~lP  202 (525)
T TIGR01327       136 LYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLG-------V---ELVDDLDELLARADFITVHTP  202 (525)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------C---EEcCCHHHHHhhCCEEEEccC
Confidence            34568999997 9999999999998888  999999853222222211       0   112468889999999999863

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.05  E-value=0.012  Score=53.10  Aligned_cols=96  Identities=17%  Similarity=0.258  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-C-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g-~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||++||+ |.+|..++..|...+ + ..+|...|++++...  ++...  ++..    .+++.++++..+|+||++.  
T Consensus         2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~--~g~~----~~~~~~~~~~~advv~Lav--   70 (266)
T COG0345           2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAE--YGVV----TTTDNQEAVEEADVVFLAV--   70 (266)
T ss_pred             ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHH--cCCc----ccCcHHHHHhhCCEEEEEe--
Confidence            69999998 999999999999988 3 248888887654322  23221  1111    1456678889999999997  


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                        +|            ..+.++++.++...++..||-+.-.+.
T Consensus        71 --KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 --KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             --Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence              22            224667777765345666655554444

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=97.04  E-value=0.0022  Score=54.22  Aligned_cols=118  Identities=22%  Similarity=0.235  Sum_probs=78.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHH-hhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD-ISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~d-l~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .++.|...|+||+|..|+.+...+.+.+.++.|+++-+.+.. +..-+ +.+     ....+..-.++.+++++.|+.|.
T Consensus        15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~k~v~q-----~~vDf~Kl~~~a~~~qg~dV~Fc   89 (238)
T KOG4039|consen   15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATDKVVAQ-----VEVDFSKLSQLATNEQGPDVLFC   89 (238)
T ss_pred             hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccccceeee-----EEechHHHHHHHhhhcCCceEEE
Confidence            345667999999999999999999999999999999887521 10000 000     00011112356678899999999


Q ss_pred             cCCCCC-CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          121 PAGVPR-KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       121 ~ag~~~-~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      +-|+.+ +.|-+  .++...-+.+.+.++..++.+-+.++++.|--.|
T Consensus        90 aLgTTRgkaGad--gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd  135 (238)
T KOG4039|consen   90 ALGTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD  135 (238)
T ss_pred             eecccccccccC--ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC
Confidence            988754 33322  2345556777888888887666677776664333

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=97.04  E-value=0.0068  Score=55.82  Aligned_cols=150  Identities=15%  Similarity=0.131  Sum_probs=85.8

Q ss_pred             CeEEEEcCCCc--------------------hHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCcceeeee
Q 024248           47 FKVAVLGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFL  103 (270)
Q Consensus        47 mKI~IIGa~G~--------------------VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~~i~  103 (270)
                      |||.|.|+ |+                    =|+.+|..|+..|+  +|+++|++...   .....+.+...       .
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA-------~   70 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV-------K   70 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC-------e
Confidence            67888886 63                    47889999999999  99999987531   12223433211       1


Q ss_pred             ccCCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHH---
Q 024248          104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKK---  179 (270)
Q Consensus       104 ~t~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~---  179 (270)
                      ..++..+++++||+||++...+               ..++++++.+.... ++.++|..| .++..  .+-+.+..   
T Consensus        71 ~AaS~aEAAa~ADVVIL~LPd~---------------aaV~eVl~GLaa~L~~GaIVID~S-TIsP~--t~~~~~e~~l~  132 (341)
T TIGR01724        71 VVSDDKEAAKHGEIHVLFTPFG---------------KGTFSIARTIIEHVPENAVICNTC-TVSPV--VLYYSLEKILR  132 (341)
T ss_pred             ecCCHHHHHhCCCEEEEecCCH---------------HHHHHHHHHHHhcCCCCCEEEECC-CCCHH--HHHHHHHHHhh
Confidence            2346779999999999986321               22233334444444 455555554 22211  12233322   


Q ss_pred             h-------CCCCCC-------C---e------eee--chhhHHHHHHHHHHHhCCCCCccceEEEccCCC
Q 024248          180 V-------GTYDPK-------R---L------LGV--TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG  224 (270)
Q Consensus       180 ~-------sg~p~~-------k---v------iG~--t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~  224 (270)
                      .       +.|.|.       +   +      +|.  ..-+...-...|++..+-.+..+-+.+++.-+|
T Consensus       133 ~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~D  202 (341)
T TIGR01724       133 LKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVAD  202 (341)
T ss_pred             cCccccCeeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhh
Confidence            1       112111       1   1      111  223334456788888888888887788887776

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.02  E-value=0.0023  Score=54.47  Aligned_cols=77  Identities=19%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeee--eccCCHHHHhCCCCEEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGF--LGQQQLEDALTGMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i--~~t~d~~~al~~ADvVIi  120 (270)
                      +.+|++|+|++|.+|..++..|+..+.  +|++++++..+..  ..++.+. ....+...  ....++.++++++|+||.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            446899999889999999999998886  9999998753221  1122211 01111111  111234577899999888


Q ss_pred             cCCC
Q 024248          121 PAGV  124 (270)
Q Consensus       121 ~ag~  124 (270)
                      +...
T Consensus       104 at~~  107 (194)
T cd01078         104 AGAA  107 (194)
T ss_pred             CCCC
Confidence            7543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.01  E-value=0.002  Score=60.99  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc-CcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~-~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .++|||+|+||+|++|..+..+|..++.+ +|+++..+...++.....+... ......+. ..+. +.++++|+||++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~~-~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVKD-ADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCCH-HHhcCCCEEEEcC
Confidence            45679999999999999999999888543 8888877543332211111000 00111011 1122 3368999999986


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            4

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=97.00  E-value=0.058  Score=47.48  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=29.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      .++|.|+||++.+|..++..|++.|.  .|++.++.
T Consensus         8 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~   41 (260)
T PRK08416          8 GKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNS   41 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCC
Confidence            35799999999999999999999998  88887653

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=97.00  E-value=0.0073  Score=55.72  Aligned_cols=66  Identities=17%  Similarity=0.157  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.+||+|||. |.+|.+++..|...|+  +|+.++...... ...+...    .+   . ..+.++++++||+||++.
T Consensus         2 ~~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~-~~~a~~~----Gv---~-~~s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         2 KGKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGAS-WKKATED----GF---K-VGTVEEAIPQADLIMNLL   67 (314)
T ss_pred             CcCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhh-HHHHHHC----CC---E-ECCHHHHHhcCCEEEEeC
Confidence            3468999997 9999999999999998  776665543211 1111111    11   1 124668889999999987

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.011  Score=59.32  Aligned_cols=114  Identities=17%  Similarity=0.170  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|++++++....  ...++....  ..+..    +....++++++       
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~  446 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAEH  446 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999998  999999875321  112222111  11111    11111222333       


Q ss_pred             CCCCEEEEcCCCCCCCC----C----chhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecC
Q 024248          113 TGMDIVIIPAGVPRKPG----M----TRDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g----~----~r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sN  164 (270)
                      ...|++|.++|......    .    +....+..|+.....+.+.    +++. ..+.|+++|.
T Consensus       447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  509 (657)
T PRK07201        447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS  509 (657)
T ss_pred             CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence            36899999998642111    0    1123455666554444444    4432 3456666653

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.99  E-value=0.0062  Score=58.19  Aligned_cols=89  Identities=21%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...+|+|+|+ |.+|..++..+...|.  +|+.+|+++.+. .+..+  .  .   .    ..+.+++++++|+||.+.|
T Consensus       201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~--G--~---~----~~~~~e~v~~aDVVI~atG  266 (413)
T cd00401         201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME--G--Y---E----VMTMEEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc--C--C---E----EccHHHHHcCCCEEEECCC
Confidence            4568999998 9999999999998898  899999976432 12111  1  0   0    1134678899999999875


Q ss_pred             CCCCCCCchhhhHHhhHHHH-HHHHHHHhHhCCCCEEEEecCC
Q 024248          124 VPRKPGMTRDDLFNINAGIV-KTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~-~~i~~~i~~~~p~a~viv~sNP  165 (270)
                      .+               ..+ ...++.   ..+.+++++++.+
T Consensus       267 ~~---------------~~i~~~~l~~---mk~GgilvnvG~~  291 (413)
T cd00401         267 NK---------------DIITGEHFEQ---MKDGAIVCNIGHF  291 (413)
T ss_pred             CH---------------HHHHHHHHhc---CCCCcEEEEeCCC
Confidence            32               111 112332   3477899898854

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.058  Score=47.44  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ..+.|+||+|.+|..++..|+.+|.  +|++++++..
T Consensus         9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~   43 (265)
T PRK07062          9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEE   43 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHH
Confidence            4799999999999999999999998  9999999753

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.98  E-value=0.0026  Score=59.34  Aligned_cols=74  Identities=23%  Similarity=0.313  Sum_probs=44.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEE-EEeCCCChhHHH-H-hhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTA-D-ISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~-LvD~~~~~~~~~-d-l~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|+||+|++|..++..|...+.. +++ +++.+...++.. + ..+......+. +. ..+.++.+.++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLN-LE-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCce-ee-cCCHHHhhcCCCEEEECCC
Confidence            69999999999999999999877554 666 667654323211 1 11000000111 11 1244454468999999874

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.98  E-value=0.0043  Score=57.44  Aligned_cols=80  Identities=21%  Similarity=0.296  Sum_probs=55.8

Q ss_pred             ccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCH
Q 024248           29 ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL  108 (270)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~  108 (270)
                      ..+.|++...+. ..-..++|+|||. |.||+.++..+..-|+  +|..||.........  .+.        .....++
T Consensus       126 ~~g~W~~~~~~g-~el~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~~--------~~~~~~L  191 (324)
T COG0111         126 RRGEWDRKAFRG-TELAGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VDG--------VVGVDSL  191 (324)
T ss_pred             HcCCcccccccc-ccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--ccc--------ceecccH
Confidence            667788732221 1234569999998 9999999999999999  999999943221111  110        1123468


Q ss_pred             HHHhCCCCEEEEcC
Q 024248          109 EDALTGMDIVIIPA  122 (270)
Q Consensus       109 ~~al~~ADvVIi~a  122 (270)
                      ++-++.||+|++..
T Consensus       192 d~lL~~sDiv~lh~  205 (324)
T COG0111         192 DELLAEADILTLHL  205 (324)
T ss_pred             HHHHhhCCEEEEcC
Confidence            88899999999976

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.96  E-value=0.006  Score=55.73  Aligned_cols=68  Identities=19%  Similarity=0.196  Sum_probs=48.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .+..||+|+|+ |.+|..++..|...|.  +|+.+|++... ..+.++.     ..   .....++.+.++++|+||.++
T Consensus       150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~G-----~~---~~~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        150 IHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEMG-----LS---PFHLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcC-----Ce---eecHHHHHHHhCCCCEEEECC
Confidence            34679999998 9999999999998887  99999997532 1111111     01   011235667889999999986

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.93  E-value=0.0021  Score=59.65  Aligned_cols=71  Identities=21%  Similarity=0.385  Sum_probs=45.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCc-cEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~-~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+|+||+|++|..++.+|..+++- .+|+.+-.....++..++..    ..+. +... +. .+++++|+||++.|.
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~-v~d~-~~-~~~~~vDvVf~A~g~   73 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELK-VEDL-TT-FDFSGVDIALFSAGG   73 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeE-EeeC-CH-HHHcCCCEEEECCCh
Confidence            69999999999999999999886552 26777765543333332211    1111 1111 22 346799999998753

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.91  E-value=0.005  Score=59.64  Aligned_cols=92  Identities=20%  Similarity=0.170  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|. |.||..+|..+...|.  +|+.+|+++...... ..+.     ..    ..+++++++.||+||.+.|
T Consensus       252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A-~~~G-----~~----~~~leell~~ADIVI~atG  318 (476)
T PTZ00075        252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQA-AMEG-----YQ----VVTLEDVVETADIFVTATG  318 (476)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHH-HhcC-----ce----eccHHHHHhcCCEEEECCC
Confidence            34568999998 9999999999998888  899998875432111 0111     00    1257788999999999865


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP  165 (270)
                      ...        ++.      .+.++.   ..|++++++++-.
T Consensus       319 t~~--------iI~------~e~~~~---MKpGAiLINvGr~  343 (476)
T PTZ00075        319 NKD--------IIT------LEHMRR---MKNNAIVGNIGHF  343 (476)
T ss_pred             ccc--------ccC------HHHHhc---cCCCcEEEEcCCC
Confidence            321        110      223333   3478899998743

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.90  E-value=0.0071  Score=57.96  Aligned_cols=66  Identities=23%  Similarity=0.191  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...+|+|+|. |.+|..++..+...|.  +|+++|+++.+..... .+.  .   .    ..+++++++++|+||.+.|
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~-~~G--~---~----v~~l~eal~~aDVVI~aTG  276 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAA-MDG--F---R----VMTMEEAAELGDIFVTATG  276 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHH-hcC--C---E----ecCHHHHHhCCCEEEECCC
Confidence            4568999998 9999999999998888  8999999864321110 111  0   0    1246788899999998864

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.019  Score=51.66  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+.+.|+||++.+|..++..|+..|.  .|+++|++.
T Consensus         6 ~k~~lITGas~GIG~aia~~la~~G~--~vii~~~~~   40 (286)
T PRK07791          6 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGV   40 (286)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEeeCCc
Confidence            34799999999999999999999998  899998764

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.90  E-value=0.0082  Score=55.17  Aligned_cols=102  Identities=21%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...+||+|+|+ |.+|..++..|...+. .+|+++|++..+.  .++...- ....   ...+++.+++.++|+||.+.+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra--~~la~~~-g~~~---~~~~~~~~~l~~aDvVi~at~  247 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERA--EELAKEL-GGNA---VPLDELLELLNEADVVISATG  247 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHH--HHHHHHc-CCeE---EeHHHHHHHHhcCCEEEECCC
Confidence            35679999998 9999999988887553 4899999875432  1222110 0111   112356678899999999986


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNS  168 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~~  168 (270)
                      .+..            ...+...   ++.. ....+++-+++|-|.
T Consensus       248 ~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi  278 (311)
T cd05213         248 APHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDI  278 (311)
T ss_pred             CCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCC
Confidence            5521            0111222   1111 134577788999884

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.89  E-value=0.0044  Score=58.54  Aligned_cols=63  Identities=16%  Similarity=0.235  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.||+.++..|...|+  +|..+|.....  .   ....         ...++++.++.||+|++...
T Consensus       114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~--~---~~~~---------~~~~L~ell~~sDiI~lh~P  176 (378)
T PRK15438        114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD--R---GDEG---------DFRSLDELVQEADILTFHTP  176 (378)
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc--c---cccc---------ccCCHHHHHhhCCEEEEeCC
Confidence            34569999998 9999999999999999  99999964211  0   0000         01368888899999998753

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.89  E-value=0.0053  Score=51.18  Aligned_cols=56  Identities=30%  Similarity=0.486  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +.+||+|+|.+..||..++.+|..++.  .|++.+.+                       |.++++.++.||+||.++|.
T Consensus        35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G~   89 (160)
T PF02882_consen   35 EGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVGK   89 (160)
T ss_dssp             TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SSS
T ss_pred             CCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeecc
Confidence            345899999988999999999999987  77777553                       34677888999999999986


Q ss_pred             C
Q 024248          125 P  125 (270)
Q Consensus       125 ~  125 (270)
                      +
T Consensus        90 ~   90 (160)
T PF02882_consen   90 P   90 (160)
T ss_dssp             T
T ss_pred             c
Confidence            6

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PLN02928 oxidoreductase family protein

Probab=96.89  E-value=0.0053  Score=57.37  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHh--hccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl--~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ...++|+|+|. |.||..+|..|...|+  +|+.+|+.........+  ................++++.++.||+|+++
T Consensus       157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            44569999997 9999999999998898  99999986321111111  0000000000000124788999999999998


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....  + .++ .++  |    .+.   +....|++++|+++
T Consensus       234 lPlt--~-~T~-~li--~----~~~---l~~Mk~ga~lINva  262 (347)
T PLN02928        234 CTLT--K-ETA-GIV--N----DEF---LSSMKKGALLVNIA  262 (347)
T ss_pred             CCCC--h-Hhh-ccc--C----HHH---HhcCCCCeEEEECC
Confidence            6322  1 111 111  1    223   33334789999987

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.89  E-value=0.0054  Score=55.71  Aligned_cols=73  Identities=22%  Similarity=0.283  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +..||+|+|+ |.+|.++++.|+..|. .+|+++|++..++  .+.++.+.  .+... +....++.+.++++|+||.+.
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~--~~~~~-~~~~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNAR--FPAAR-ATAGSDLAAALAAADGLVHAT  200 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhh--CCCeE-EEeccchHhhhCCCCEEEECC
Confidence            4458999998 9999999999998886 5899999986433  23344322  11111 122234556789999999984

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.11  Score=45.70  Aligned_cols=159  Identities=14%  Similarity=0.102  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceeee----eccCCHHHH-------
Q 024248           46 GFKVAVLGAAG-GIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF----LGQQQLEDA-------  111 (270)
Q Consensus        46 ~mKI~IIGa~G-~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~i----~~t~d~~~a-------  111 (270)
                      .+++.|+|++| -+|..++..|+.+|.  +|++.|++...  ....++........+..+    ....+++++       
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45899999987 599999999999998  89999987532  111222211000111111    111112222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHH----HHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      +...|++|.++|......   .+   ..+.+..|+.....+++    .+.+....+.+++++.....            .
T Consensus        95 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~------------~  162 (262)
T PRK07831         95 LGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGW------------R  162 (262)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhc------------C
Confidence            236799999998642111   11   12234455554444433    43332224556555432221            0


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.+..-.++.++..-..+-+.+|..+.  +..+++.++-
T Consensus       163 ~~~~~~~Y~~sKaal~~~~~~la~e~~--~~gI~v~~i~  199 (262)
T PRK07831        163 AQHGQAHYAAAKAGVMALTRCSALEAA--EYGVRINAVA  199 (262)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence            123333456654444456777777753  3445554443

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.86  E-value=0.0028  Score=59.20  Aligned_cols=74  Identities=22%  Similarity=0.357  Sum_probs=46.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ..++||+|+||+|++|..+...|..+++ ..++.++......++..+...    ..+. +. ..+. +++.++|+||+++
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~-v~-~~~~-~~~~~~D~vf~a~   77 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYT-VE-ELTE-DSFDGVDIALFSA   77 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeE-EE-eCCH-HHHcCCCEEEECC
Confidence            4568999999999999999999888554 236766655433332222211    1111 11 1133 5678999999987


Q ss_pred             CC
Q 024248          123 GV  124 (270)
Q Consensus       123 g~  124 (270)
                      +.
T Consensus        78 p~   79 (344)
T PLN02383         78 GG   79 (344)
T ss_pred             Cc
Confidence            53

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.85  E-value=0.006  Score=56.40  Aligned_cols=73  Identities=27%  Similarity=0.328  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHH-HHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~-~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ++||+|+||+|.||+.+...|.++ -.++++.++-.....|+. .++.....  .+.  ....|. ..++++|+||+++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~--~~~~~~-~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVP--EDAADE-FVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCc--cccccc-cccccCCEEEEeCc
Confidence            368999999999999999999984 445667777665544433 33332210  000  001232 34669999999986

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.83  E-value=0.0062  Score=55.42  Aligned_cols=97  Identities=22%  Similarity=0.243  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+..||+|+|+ |.+|..++..|...|.  +|+++|++....  .......    ...+ ...++++.++++|+||.+..
T Consensus       149 l~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g----~~~~-~~~~l~~~l~~aDiVint~P  218 (287)
T TIGR02853       149 IHGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMG----LIPF-PLNKLEEKVAEIDIVINTIP  218 (287)
T ss_pred             CCCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCC----Ceee-cHHHHHHHhccCCEEEECCC
Confidence            34568999998 9999999999999897  999999875321  1111110    0111 12356678899999999862


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNS  168 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~  168 (270)
                      ..         ++  +    .+..   ....++++++.++ +|..+
T Consensus       219 ~~---------ii--~----~~~l---~~~k~~aliIDlas~Pg~t  246 (287)
T TIGR02853       219 AL---------VL--T----ADVL---SKLPKHAVIIDLASKPGGT  246 (287)
T ss_pred             hH---------Hh--C----HHHH---hcCCCCeEEEEeCcCCCCC
Confidence            21         11  1    1222   2234678888764 78664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.034  Score=49.69  Aligned_cols=111  Identities=18%  Similarity=0.215  Sum_probs=62.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHH------hCCCCE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDA------LTGMDI  117 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~a------l~~ADv  117 (270)
                      .+.|+|+ |.+|..++..|. .|.  +|+++|++....  ...++........ +. .+....+.+++      +...|+
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            4677776 899999999986 687  999999875321  1122221110000 10 01111112222      235899


Q ss_pred             EEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec
Q 024248          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (270)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s  163 (270)
                      +|.++|.... ..+....+..|+.....+++.+.+.- +++.+++++
T Consensus        80 li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~is  125 (275)
T PRK06940         80 LVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIA  125 (275)
T ss_pred             EEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEE
Confidence            9999987532 22344567788877777766665442 234444444

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.83  E-value=0.01  Score=56.62  Aligned_cols=67  Identities=24%  Similarity=0.161  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|. |.+|..++..+...|.  +|+.+|+++.+.... ..+.  . .      ..+.+++++++|+||.+.|
T Consensus       193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~G--~-~------v~~leeal~~aDVVItaTG  259 (406)
T TIGR00936       193 IAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMDG--F-R------VMTMEEAAKIGDIFITATG  259 (406)
T ss_pred             CCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-HhcC--C-E------eCCHHHHHhcCCEEEECCC
Confidence            34568999998 9999999999998888  999999876432111 1111  0 1      1135678899999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.82  E-value=0.0076  Score=57.66  Aligned_cols=71  Identities=20%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee-eeccCCHHHH-hCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA-LTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~-i~~t~d~~~a-l~~ADvVIi~a  122 (270)
                      |||.|+|+ |.+|..++..|...|+  +|+++|.++....  .+........+.. ......++++ +.++|.||++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~~--~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERLR--RLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHHH--HHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            79999998 9999999999999998  9999999754221  1211000000000 0111234455 78999999985

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.066  Score=46.57  Aligned_cols=35  Identities=14%  Similarity=0.117  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      +.+.|+|+++-+|..++..|+++|.  +|+++++++.
T Consensus         6 k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~   40 (227)
T PRK08862          6 SIILITSAGSVLGRTISCHFARLGA--TLILCDQDQS   40 (227)
T ss_pred             eEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHH
Confidence            4799999999999999999999998  9999998753

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.81  E-value=0.058  Score=48.99  Aligned_cols=118  Identities=18%  Similarity=0.229  Sum_probs=74.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hhHH-HHhhccccCcceee----eeccCCHH-------HHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT-ADISHMDTNAVVRG----FLGQQQLE-------DAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~-~dl~~~~~~~~~~~----i~~t~d~~-------~al  112 (270)
                      .+.|+|+|||.-+|.++|+.++..|.  .++++.+... ...+ .++.......++..    +...++.+       .-+
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            44689999999999999999999998  8888887653 1122 33332211111110    11122222       235


Q ss_pred             CCCCEEEEcCCCCCCCCC-c------hhhhHHhh----HHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          113 TGMDIVIIPAGVPRKPGM-T------RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~-~------r~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      .+.|+.|..||..+ .+. +      ....++.|    +-..+..++.+++.+ ++.|++++....
T Consensus        90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG  153 (282)
T KOG1205|consen   90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG  153 (282)
T ss_pred             CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence            68999999999876 331 1      12234445    456788888888876 788887776554

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.79  E-value=0.0027  Score=59.11  Aligned_cols=71  Identities=24%  Similarity=0.370  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +++||+|+||||++|..+..+|..+  +. .+|.++......|+...+...    .+. +... + +.++.++|+||+++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~-~~l~~laS~~saG~~~~~~~~----~~~-v~~~-~-~~~~~~~Dvvf~a~   74 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPV-GELYALASEESAGETLRFGGK----SVT-VQDA-A-EFDWSQAQLAFFVA   74 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCc-eEEEEEEccCcCCceEEECCc----ceE-EEeC-c-hhhccCCCEEEECC
Confidence            5689999999999999999999884  44 388888665433332222111    111 1111 1 23457899999987


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      +
T Consensus        75 p   75 (336)
T PRK08040         75 G   75 (336)
T ss_pred             C
Confidence            4

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.79  E-value=0.0059  Score=57.34  Aligned_cols=71  Identities=18%  Similarity=0.243  Sum_probs=45.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCCc-cEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMK-INPLV-SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~-~~g~~-~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +||+|+||+|.||+.+...|. .+.+. .+++++......+....+....  ..+   ...++. +++++.|++|+++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~--~~v---~~~~~~-~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTL---QDAFDI-DALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCc--ceE---EcCccc-ccccCCCEEEEcCC
Confidence            489999999999999999888 55553 5788887654333222222111  111   112222 36789999999875

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.78  E-value=0.0047  Score=55.74  Aligned_cols=70  Identities=26%  Similarity=0.256  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC--CCccEEE-EEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~--g~~~eV~-LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      ++++||+|||. |.+|..++..+...  ++  +|+ ++|++....  .++.......     ...+++++.+.++|+|++
T Consensus         4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~a--~~~a~~~g~~-----~~~~~~eell~~~D~Vvi   73 (271)
T PRK13302          4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQRH--ADFIWGLRRP-----PPVVPLDQLATHADIVVE   73 (271)
T ss_pred             CCeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHHH--HHHHHhcCCC-----cccCCHHHHhcCCCEEEE
Confidence            34579999997 99999999888763  44  665 778764332  2222110000     113467777889999999


Q ss_pred             cCC
Q 024248          121 PAG  123 (270)
Q Consensus       121 ~ag  123 (270)
                      +++
T Consensus        74 ~tp   76 (271)
T PRK13302         74 AAP   76 (271)
T ss_pred             CCC
Confidence            975

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.78  E-value=0.015  Score=48.93  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=30.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ||+|+|+ |-+|+.++..|+..|. .+++++|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899998 9999999999999987 5899999984

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.78  E-value=0.0057  Score=57.88  Aligned_cols=63  Identities=17%  Similarity=0.168  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.||+.++..+...|+  +|.++|......   +  ..     .    ...++++.++.||+|++...
T Consensus       114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~~---~--~~-----~----~~~~l~ell~~aDiV~lh~P  176 (381)
T PRK00257        114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQEA---E--GD-----G----DFVSLERILEECDVISLHTP  176 (381)
T ss_pred             cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCccccc---c--cC-----c----cccCHHHHHhhCCEEEEeCc
Confidence            34568999998 9999999999999999  999999743210   0  00     0    01357888899999999764

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.77  E-value=0.019  Score=57.54  Aligned_cols=138  Identities=14%  Similarity=0.173  Sum_probs=82.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC---HHH-HhCCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LED-ALTGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d---~~~-al~~ADvVIi~  121 (270)
                      .++|.|+|. |.+|..++..|..+++  +++++|.|++.  +..+.+.. .+.+.  -..++   +++ .+++||+||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~--GDat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYG-YKVYY--GDATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCC-CeEEE--eeCCCHHHHHhcCCccCCEEEEE
Confidence            468999998 9999999999999999  99999998642  22222221 11111  01122   222 36799999998


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEe-cCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~  200 (270)
                      .+..           ..|    ..++..+++.+|+..++.- .|+.+      .+.+++. |-  +.++-=+..-+..+-
T Consensus       472 ~~d~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~-Ga--~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDT----MKIVELCQQHFPHLHILARARGRVE------AHELLQA-GV--TQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhC-CC--CEEEccHHHHHHHHH
Confidence            5211           334    3466778888899766554 46644      3334443 32  333322333334455


Q ss_pred             HHHHHHhCCCCCccc
Q 024248          201 TFVAEVLGLDPREVD  215 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~  215 (270)
                      +..=..+|+++.++.
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            555566777777663

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.74  E-value=0.0053  Score=54.90  Aligned_cols=68  Identities=25%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +|||+|+|++|.+|..++..+...+-+.-+.++|.+.......  ..    ..   +..++|+++.++++|+||.+.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~~----~~---i~~~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--GA----LG---VAITDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--CC----CC---ccccCCHHHhccCCCEEEECC
Confidence            4799999987999999998777643333344578765322111  11    11   123467878788899998665

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.73  E-value=0.014  Score=52.51  Aligned_cols=68  Identities=13%  Similarity=0.275  Sum_probs=44.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||. |.+|..++..+...+ -..-+.++|++...  ..++.+.. .  .   ...+++++.+.++|+|++++.
T Consensus         2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~-~--~---~~~~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT-G--A---KACLSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc-C--C---eeECCHHHHhcCCCEEEEcCC
Confidence            69999997 999999998887654 22235678886432  22222210 0  1   113467777789999999974

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.73  E-value=0.0083  Score=48.88  Aligned_cols=57  Identities=28%  Similarity=0.420  Sum_probs=47.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+..+|+|+|.+..+|..++..|..+|.  .|..++.+                       |.+++++++.||+||.+.|
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg   80 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSP   80 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecC
Confidence            4456999999999999999999998887  88888753                       2256788999999999987


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus        81 ~~   82 (140)
T cd05212          81 KP   82 (140)
T ss_pred             CC
Confidence            65

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06484 short chain dehydrogenase; Validated

Probab=96.72  E-value=0.026  Score=54.91  Aligned_cols=147  Identities=16%  Similarity=0.095  Sum_probs=77.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHH-------HHhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLE-------DALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~-------~al~~AD  116 (270)
                      ...+.|+|+++.+|..++..|+..|.  .|++++++....  ...++... .....-.+....+++       +.+...|
T Consensus         5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~g~iD   81 (520)
T PRK06484          5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPD-HHALAMDVSDEAQIREGFEQLHREFGRID   81 (520)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc-eeEEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence            34789999999999999999999998  999999875321  11122110 000000011111121       2234689


Q ss_pred             EEEEcCCCCC---CC--CCc---hhhhHHhhHHHHHHH----HHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          117 IVIIPAGVPR---KP--GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       117 vVIi~ag~~~---~~--g~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      ++|.++|...   .+  ..+   ....+..|+.....+    .+.+.+....+.|+++|.-...            .+.|
T Consensus        82 ~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~------------~~~~  149 (520)
T PRK06484         82 VLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGL------------VALP  149 (520)
T ss_pred             EEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccC------------CCCC
Confidence            9999998621   11  111   223456666544444    4444332333367666643321            0123


Q ss_pred             CCCeeeechhhHHHHHHHHHHHh
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      ..-.++.++..-..+-+.++..+
T Consensus       150 ~~~~Y~asKaal~~l~~~la~e~  172 (520)
T PRK06484        150 KRTAYSASKAAVISLTRSLACEW  172 (520)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHh
Confidence            23345555444445666666665

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.72  E-value=0.009  Score=55.31  Aligned_cols=94  Identities=17%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~-~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ....++|+|+|. |.||..++..+. ..|+  +|..+|+........++.       .   . ..++++.++.||+|++.
T Consensus       142 ~L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~~-------~---~-~~~l~ell~~sDvv~lh  207 (323)
T PRK15409        142 DVHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERFN-------A---R-YCDLDTLLQESDFVCII  207 (323)
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhcC-------c---E-ecCHHHHHHhCCEEEEe
Confidence            345679999997 999999999887 6777  999888753211111110       0   1 12688899999999998


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .....   .++ .++  |    .+.++.+   .|++++||++
T Consensus       208 ~plt~---~T~-~li--~----~~~l~~m---k~ga~lIN~a  236 (323)
T PRK15409        208 LPLTD---ETH-HLF--G----AEQFAKM---KSSAIFINAG  236 (323)
T ss_pred             CCCCh---HHh-hcc--C----HHHHhcC---CCCeEEEECC
Confidence            63221   111 111  2    2333443   4889999987

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=96.71  E-value=0.019  Score=53.52  Aligned_cols=56  Identities=13%  Similarity=-0.043  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           58 IGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        58 VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      =|..+|..|+..|+  +|+++|+++...   ....+...    .+   ..+++..+++++||+||++.
T Consensus        31 gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~----Gi---~~asd~~eaa~~ADvVIlaV   89 (342)
T PRK12557         31 GGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA----GV---KVVSDDAEAAKHGEIHILFT   89 (342)
T ss_pred             CHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC----CC---EEeCCHHHHHhCCCEEEEEC
Confidence            37788888999998  999999975311   11112211    11   22346778889999999985

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.69  E-value=0.025  Score=49.69  Aligned_cols=99  Identities=23%  Similarity=0.331  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc--EEEEEeCCC----Chh-----HHHHhhccccCcceeeeeccCCHHHHhC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS--VLHLYDVVN----TPG-----VTADISHMDTNAVVRGFLGQQQLEDALT  113 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~--eV~LvD~~~----~~~-----~~~dl~~~~~~~~~~~i~~t~d~~~al~  113 (270)
                      +.+||+|+|| |..|..++..|...|. +  +|+++|++.    ...     ...++.+......   .  ..+++++++
T Consensus        24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~   96 (226)
T cd05311          24 EEVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALK   96 (226)
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHh
Confidence            4468999998 9999999999998887 4  799999983    221     1122222110000   1  125778899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCC
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~  168 (270)
                      ++|+||-+.+    +|.     +.      .+.++.+   +++.+++.++||...
T Consensus        97 ~~dvlIgaT~----~G~-----~~------~~~l~~m---~~~~ivf~lsnP~~e  133 (226)
T cd05311          97 GADVFIGVSR----PGV-----VK------KEMIKKM---AKDPIVFALANPVPE  133 (226)
T ss_pred             cCCEEEeCCC----CCC-----CC------HHHHHhh---CCCCEEEEeCCCCCc
Confidence            9999998864    232     11      2333333   366777778899753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.69  E-value=0.023  Score=51.51  Aligned_cols=101  Identities=22%  Similarity=0.301  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC----CCc-----cEEEEEeCCCC----hh----HHHHhhccccCcceeeeeccCCH
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVNT----PG----VTADISHMDTNAVVRGFLGQQQL  108 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~----g~~-----~eV~LvD~~~~----~~----~~~dl~~~~~~~~~~~i~~t~d~  108 (270)
                      .-||++.|| |.-|..++.+|...    |+.     +.++++|++-.    ..    ....+.+.. ..     ....++
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~~-----~~~~~L   97 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-EE-----KEGKSL   97 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-Cc-----ccCCCH
Confidence            358999998 99999999877654    762     48999999742    11    111222210 00     123579


Q ss_pred             HHHhC--CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          109 EDALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       109 ~~al~--~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      +++++  ++|++|=+.+.+   |-           +.+++++.+.+.+++.+|+-.|||..
T Consensus        98 ~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312          98 LEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             HHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            99999  999988765433   21           12678889999999999999999975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.25  Score=43.27  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHH---HhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLED---ALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~---al~~AD  116 (270)
                      .+++.|+|++|.+|..++..|+..|.  +|++++++....  ...++.... ...+..    +....++++   .+...|
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            35799999999999999999999998  999999875322  112232110 011111    111111212   245689


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHH----HHHHHhHhCCCCEEEEecC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~sN  164 (270)
                      ++|.++|......   .+   ....+..|+.....    +.+.+.+. ..+.++++|.
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~iss  140 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVIG  140 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEecC
Confidence            9999998642111   11   12234556554444    44444432 2355665553

>PRK05599 hypothetical protein; Provisional

Probab=96.69  E-value=0.14  Score=44.81  Aligned_cols=155  Identities=11%  Similarity=0.132  Sum_probs=82.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCH-------HHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQL-------EDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~-------~~al~  113 (270)
                      |.+.|+||++-+|..++..|+ +|.  .|++.++++...  ...++..... ..+..    +....+.       .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            468999999999999999988 476  999999875422  2223332110 01110    1111111       12234


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .-|++|..+|......   .+.   .+....|+.    ..+.+.+.+.+...++.|+++|.-...            .+.
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------------~~~  144 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGW------------RAR  144 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccc------------cCC
Confidence            6899999998642211   111   122233332    333445556543335677777654331            012


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      |..-.++.++-....+-+.++..++  +..|++..+
T Consensus       145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~~v  178 (246)
T PRK05599        145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLIIA  178 (246)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEEEe
Confidence            2233456655555567777888774  334554433

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0047  Score=57.23  Aligned_cols=74  Identities=26%  Similarity=0.280  Sum_probs=46.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc--CcceeeeeccCCHHHH-hCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDA-LTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~--~~~~~~i~~t~d~~~a-l~~ADvVIi~a  122 (270)
                      ++||+|+||+|+.|.-+..+|..++.. |+.++...+..++...-.+...  ...++ + .+.|.++. ..+||+||++.
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~-~-~~~~~~~~~~~~~DvvFlal   78 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLP-F-QTIDPEKIELDECDVVFLAL   78 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccc-c-ccCChhhhhcccCCEEEEec
Confidence            569999999999999999999998766 6888877653333221111111  11111 1 12233333 45699999985

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.67  E-value=0.0089  Score=56.33  Aligned_cols=77  Identities=17%  Similarity=0.222  Sum_probs=50.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee-eeccCCHHHHhCCCCEEEEc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~-i~~t~d~~~al~~ADvVIi~  121 (270)
                      +.++.||+|+|+ |.+|...+..+...|.  +|+.+|++.....  .+.... ...+.. .....++.+.++++|+||.+
T Consensus       164 ~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       164 GVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccCCEEEEc
Confidence            345668999998 9999999999998897  8999998753221  111110 000000 11113466788999999998


Q ss_pred             CCCC
Q 024248          122 AGVP  125 (270)
Q Consensus       122 ag~~  125 (270)
                      ++.+
T Consensus       238 ~~~~  241 (370)
T TIGR00518       238 VLIP  241 (370)
T ss_pred             cccC
Confidence            7554

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.66  E-value=0.028  Score=49.46  Aligned_cols=157  Identities=14%  Similarity=0.162  Sum_probs=79.3

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCccee-eeeccCCHH-------HHhCCC
Q 024248           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVR-GFLGQQQLE-------DALTGM  115 (270)
Q Consensus        47 mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~~-~i~~t~d~~-------~al~~A  115 (270)
                      +.+.|+||+  +-+|..++..|++.|.  .|++.+++... ....++..... ..+. .+....+.+       +.+...
T Consensus         8 k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          8 KKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQNDRMKKSLQKLVDEED-LLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             CEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCchHHHHHHHhhccCce-eEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            479999997  5899999999999998  99999886321 11112211100 0000 011111111       123457


Q ss_pred             CEEEEcCCCCCC---CC----Cch---hhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          116 DIVIIPAGVPRK---PG----MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       116 DvVIi~ag~~~~---~g----~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      |++|..+|....   .+    .+.   ...+..|+.....+++.+...- ..+.++++|.-...          .  +.|
T Consensus        85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~----------~--~~~  152 (252)
T PRK06079         85 DGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSE----------R--AIP  152 (252)
T ss_pred             CEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcc----------c--cCC
Confidence            999999986421   01    111   1234455544443444433321 24566666532220          0  122


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ..-.++.++-.-..|-+.+|.++.  +..|++..+-
T Consensus       153 ~~~~Y~asKaal~~l~~~la~el~--~~gI~vn~i~  186 (252)
T PRK06079        153 NYNVMGIAKAALESSVRYLARDLG--KKGIRVNAIS  186 (252)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence            222355555555567777777763  3445544443

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.66  E-value=0.005  Score=57.34  Aligned_cols=71  Identities=21%  Similarity=0.392  Sum_probs=44.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+||+|+||||++|.-+..+|.++++ ..+++++...+..|+...+...    .+. +... +. ++++++|+||++.+
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~----~l~-~~~~-~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGK----NLR-VREV-DS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCc----ceE-EeeC-Ch-HHhcCCCEEEEcCC
Confidence            36999999999999999999986543 2366677554333322222211    111 1112 22 33689999999864

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.65  E-value=0.0098  Score=49.56  Aligned_cols=65  Identities=17%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ..+|+|||- |.-|...|..|.+.|+  +|+.-.+........--.+.        | ...+++|+++.||+|+++.
T Consensus         4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~G--------f-~v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADG--------F-EVMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT----------ECCEHHHHHHC-SEEEE-S
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCC--------C-eeccHHHHHhhCCEEEEeC
Confidence            458999998 9999999999999999  88877775442221111221        1 1236789999999999985

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02494 adenosylhomocysteinase

Probab=96.64  E-value=0.016  Score=56.06  Aligned_cols=90  Identities=21%  Similarity=0.198  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...+|+|+|. |.+|..++..+...|.  +|+.+|+++... .+.+  +.  +.       ..+++++++.+|+||.+.|
T Consensus       253 aGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~--~G--~~-------vv~leEal~~ADVVI~tTG  318 (477)
T PLN02494        253 AGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM--EG--YQ-------VLTLEDVVSEADIFVTTTG  318 (477)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh--cC--Ce-------eccHHHHHhhCCEEEECCC
Confidence            4568999998 9999999999998888  899999876421 2211  11  00       1146678999999998765


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP  165 (270)
                      ...        .      +..+.   +....+++++++++-+
T Consensus       319 t~~--------v------I~~e~---L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        319 NKD--------I------IMVDH---MRKMKNNAIVCNIGHF  343 (477)
T ss_pred             Ccc--------c------hHHHH---HhcCCCCCEEEEcCCC
Confidence            321        0      01222   3333478999999864

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.63  E-value=0.004  Score=58.16  Aligned_cols=72  Identities=25%  Similarity=0.486  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCc--cEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~--~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +++||+|+||+|++|..+..+|...+.+  .++.++......|+...+...    .+. +. ..|. +.+.++|+||+++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~-v~-~~~~-~~~~~~Divf~a~   76 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EII-IQ-EAKI-NSFEGVDIAFFSA   76 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceE-EE-eCCH-HHhcCCCEEEECC
Confidence            4579999999999999999999854433  257788765444433322211    111 11 1243 4578999999987


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      +
T Consensus        77 ~   77 (347)
T PRK06728         77 G   77 (347)
T ss_pred             C
Confidence            5

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.62  E-value=0.0023  Score=60.30  Aligned_cols=74  Identities=24%  Similarity=0.278  Sum_probs=45.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhCCCCEEEEcCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |+|+|+ |++|+.++..|++.+...+|++.|++..+...  +........+..    +....++++.++++|+||.++|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAER--LAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH--HHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH--HHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789999 99999999999988766699999998643221  111000111111    11112356788999999999864


Q ss_pred             C
Q 024248          125 P  125 (270)
Q Consensus       125 ~  125 (270)
                      .
T Consensus        78 ~   78 (386)
T PF03435_consen   78 F   78 (386)
T ss_dssp             G
T ss_pred             c
Confidence            4

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.62  E-value=0.016  Score=53.68  Aligned_cols=93  Identities=25%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+.++++|+|. |.||..+|..+.--|+  +|..+|+... .+..+....         ... ++++.++.||+|++.+.
T Consensus       144 l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~~---------~y~-~l~ell~~sDii~l~~P  209 (324)
T COG1052         144 LRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELGA---------RYV-DLDELLAESDIISLHCP  209 (324)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcCc---------eec-cHHHHHHhCCEEEEeCC
Confidence            45679999997 9999999999996677  9999999754 111111111         112 37888999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ...   +++ .  .-|    .+.   +++..|++++||.+
T Consensus       210 lt~---~T~-h--Lin----~~~---l~~mk~ga~lVNta  236 (324)
T COG1052         210 LTP---ETR-H--LIN----AEE---LAKMKPGAILVNTA  236 (324)
T ss_pred             CCh---HHh-h--hcC----HHH---HHhCCCCeEEEECC
Confidence            221   111 1  112    223   33334788999987

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.61  E-value=0.0058  Score=54.62  Aligned_cols=101  Identities=21%  Similarity=0.279  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC----CCc-----cEEEEEeCCCC--hh------HHHHhhccccCcceeeeeccCCHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVNT--PG------VTADISHMDTNAVVRGFLGQQQLE  109 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~----g~~-----~eV~LvD~~~~--~~------~~~dl~~~~~~~~~~~i~~t~d~~  109 (270)
                      .||+++|| |..|..++.+|...    |+-     +.++++|++-.  ..      ....+.+... + .   ....++.
T Consensus        26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~-~-~---~~~~~L~   99 (255)
T PF03949_consen   26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTN-P-E---KDWGSLL   99 (255)
T ss_dssp             -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSS-T-T---T--SSHH
T ss_pred             cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCc-c-c---ccccCHH
Confidence            48999998 99999999877654    874     68999999731  11      1122222211 1 0   0114789


Q ss_pred             HHhCCC--CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          110 DALTGM--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       110 ~al~~A--DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      ++++++  |++|=+.+.+   |.           +.+++++.+.+++++.+|+=.|||..
T Consensus       100 eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~  145 (255)
T PF03949_consen  100 EAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTP  145 (255)
T ss_dssp             HHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred             HHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCC
Confidence            999999  9988876543   21           23778999999999999998999976

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=96.59  E-value=0.033  Score=48.94  Aligned_cols=156  Identities=17%  Similarity=0.063  Sum_probs=80.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHh----CCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh---C-
Q 024248           48 KVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL---T-  113 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~----~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al---~-  113 (270)
                      .+.|+||++.+|..++..|+.    .|.  .|++.+++....  ...++........+..    +....+.++.+   . 
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~   79 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGS--VLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRE   79 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCc--EEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHh
Confidence            478999999999999998886    677  899999875321  2223332100011111    11111121211   1 


Q ss_pred             -------CCCEEEEcCCCCCCC----C--Cc---hhhhHHhhHHHH----HHHHHHHhHh-CCCCEEEEecCCCCCcHHH
Q 024248          114 -------GMDIVIIPAGVPRKP----G--MT---RDDLFNINAGIV----KTLCEGIAKC-CPKAIVNLISNPVNSTVPI  172 (270)
Q Consensus       114 -------~ADvVIi~ag~~~~~----g--~~---r~~~~~~N~~i~----~~i~~~i~~~-~p~a~viv~sNPv~~~~~i  172 (270)
                             +-|++|..+|.....    .  .+   ....+..|+...    +.+.+.+++. ...+.|+++|.....    
T Consensus        80 ~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~----  155 (256)
T TIGR01500        80 LPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAI----  155 (256)
T ss_pred             ccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhC----
Confidence                   125888888853211    1  11   123456666544    4444444432 123566666543220    


Q ss_pred             HHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          173 AAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       173 ~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                              .++|..-.++.++..-..+.+.++..+.  +..+++.++
T Consensus       156 --------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~~i~v~~v  192 (256)
T TIGR01500       156 --------QPFKGWALYCAGKAARDMLFQVLALEEK--NPNVRVLNY  192 (256)
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHHhc--CCCeEEEEe
Confidence                    1223223355555444567777777764  455666555

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.58  E-value=0.013  Score=53.84  Aligned_cols=94  Identities=20%  Similarity=0.241  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      -..++|+|+|. |.||..+|..+...|+  +|+.+|+.....      ..      .  ....++++.++.||+|+++..
T Consensus       120 L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~~------~~------~--~~~~~l~ell~~aDiv~~~lp  182 (303)
T PRK06436        120 LYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVND------GI------S--SIYMEPEDIMKKSDFVLISLP  182 (303)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCccc------Cc------c--cccCCHHHHHhhCCEEEECCC
Confidence            34568999997 9999999998887788  999999853210      00      0  001367888999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ...   .++ .++  |    .+.++.+   .|++++|+++  .++|
T Consensus       183 ~t~---~T~-~li--~----~~~l~~m---k~ga~lIN~sRG~~vd  215 (303)
T PRK06436        183 LTD---ETR-GMI--N----SKMLSLF---RKGLAIINVARADVVD  215 (303)
T ss_pred             CCc---hhh-cCc--C----HHHHhcC---CCCeEEEECCCccccC
Confidence            221   111 111  1    2333333   4788999987  4566

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.58  E-value=0.01  Score=52.97  Aligned_cols=102  Identities=21%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC----Cc-----cEEEEEeCCCC----hh----HHHHhhccccCcceeeeeccCCH
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP----LV-----SVLHLYDVVNT----PG----VTADISHMDTNAVVRGFLGQQQL  108 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g----~~-----~eV~LvD~~~~----~~----~~~dl~~~~~~~~~~~i~~t~d~  108 (270)
                      ..||++.|| |..|..++.+|...+    +.     +.++++|.+-.    ..    ....+.+.   .+-.  ....++
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~---~~~~--~~~~~L   98 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARF---ANPE--RESGDL   98 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHH---cCcc--cccCCH
Confidence            358999998 999999998776543    31     28999998742    10    00111101   0100  123589


Q ss_pred             HHHhC--CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          109 EDALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       109 ~~al~--~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      .++++  ++|++|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..
T Consensus        99 ~eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  145 (254)
T cd00762          99 EDAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTS  145 (254)
T ss_pred             HHHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCC
Confidence            99999  999988766544   2           112678889999999999998999976

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.56  E-value=0.01  Score=54.35  Aligned_cols=111  Identities=23%  Similarity=0.214  Sum_probs=66.8

Q ss_pred             CCcchhhHHHHHHHhhcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248            3 QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      -|||----|++-..|-.+     .|+.-++-...-.- +.+..+-||+|+|+ |.+|..-|..+...|-  +|+.+|++.
T Consensus       131 aPMSeVAGrla~q~Ga~~-----lek~~GG~GvllgG-vpGV~~~kv~iiGG-GvvgtnaAkiA~glgA--~Vtild~n~  201 (371)
T COG0686         131 APMSEVAGRLAAQAGAYY-----LEKTNGGKGVLLGG-VPGVLPAKVVVLGG-GVVGTNAAKIAIGLGA--DVTILDLNI  201 (371)
T ss_pred             chHHHHhhhHHHHHHHHH-----HHhccCCceeEecC-CCCCCCccEEEECC-ccccchHHHHHhccCC--eeEEEecCH
Confidence            367766666655554443     12222222222222 23566779999999 9999998887775554  999999985


Q ss_pred             ChhHHHHhhccccCcceee-eeccCCHHHHhCCCCEEEEcCCCC
Q 024248           83 TPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        83 ~~~~~~dl~~~~~~~~~~~-i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      .+-..+|-..   ..++.. .+...+++++++.+|+||-+.=.|
T Consensus       202 ~rl~~ldd~f---~~rv~~~~st~~~iee~v~~aDlvIgaVLIp  242 (371)
T COG0686         202 DRLRQLDDLF---GGRVHTLYSTPSNIEEAVKKADLVIGAVLIP  242 (371)
T ss_pred             HHHhhhhHhh---CceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence            4322222221   222222 223346889999999999876443

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.56  E-value=0.17  Score=44.53  Aligned_cols=158  Identities=14%  Similarity=0.131  Sum_probs=81.0

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhcc-ccCccee-eeeccCCHH-------HHhCC
Q 024248           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM-DTNAVVR-GFLGQQQLE-------DALTG  114 (270)
Q Consensus        47 mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~-~~~~~~~-~i~~t~d~~-------~al~~  114 (270)
                      +.+.|+||+  +-+|..++..|++.|.  .|++.|++.... ...++... .....+. .+....+.+       +.+..
T Consensus        11 k~~lItGas~g~GIG~a~a~~la~~G~--~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533         11 KRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            468899986  3799999999999998  999999875311 11122111 0000000 011111111       22346


Q ss_pred             CCEEEEcCCCCCCC---C----Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          115 MDIVIIPAGVPRKP---G----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       115 ADvVIi~ag~~~~~---g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .|++|..||.....   +    .+   ..+.+..|+.....+++.+...- ..+.++++|.....          .  ..
T Consensus        89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~----------~--~~  156 (258)
T PRK07533         89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE----------K--VV  156 (258)
T ss_pred             CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc----------c--CC
Confidence            79999999864210   1    11   22345666655555555443322 23566665532221          0  12


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      |..-.++.++-.-..+-+.++..++  +..|++..+-
T Consensus       157 ~~~~~Y~asKaal~~l~~~la~el~--~~gI~Vn~v~  191 (258)
T PRK07533        157 ENYNLMGPVKAALESSVRYLAAELG--PKGIRVHAIS  191 (258)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence            2222355555444556677777764  3345444433

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=96.54  E-value=0.029  Score=48.47  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=27.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEE-eCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVV   81 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D~~   81 (270)
                      .+.|+||+|++|..++..|++.|.  +|++. +++
T Consensus         3 ~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~   35 (247)
T PRK09730          3 IALVTGGSRGIGRATALLLAQEGY--TVAVNYQQN   35 (247)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            589999999999999999999998  88764 444

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.54  E-value=0.015  Score=54.82  Aligned_cols=71  Identities=23%  Similarity=0.277  Sum_probs=42.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCC-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKI-NPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~-~g~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +||+|+||+|++|..+..+++. ..+ ..+++++......+....+...    ... +....+. +.++++|+||++++
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~-v~~~~~~-~~~~~~Divf~a~~   74 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGT-LQDAFDI-DALKKLDIIITCQG   74 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cce-EEecCCh-hHhcCCCEEEECCC
Confidence            5899999999999999974544 444 2357787654322222222211    111 1111233 45789999999875

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.53  E-value=0.026  Score=49.07  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+..||+|+|+ |-+|+.++..|+..|. .+++++|.+.
T Consensus        26 L~~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         26 LKKAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             HhCCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            34558999998 9999999999999988 5899999983

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.53  E-value=0.15  Score=45.42  Aligned_cols=156  Identities=15%  Similarity=0.168  Sum_probs=81.2

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhcc-ccCccee-eeeccCCH-------HHHhCC
Q 024248           47 FKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM-DTNAVVR-GFLGQQQL-------EDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~-~~~~~~~-~i~~t~d~-------~~al~~  114 (270)
                      ..+.|+||++  -+|..+|..|+..|.  .|++.++++... ...++... .....+. .+....+.       .+.+..
T Consensus         8 k~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          8 KRGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CEEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            3688999964  799999999999998  999998864211 11222211 0000000 01111111       122346


Q ss_pred             CCEEEEcCCCCCCC-------CCch---hhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          115 MDIVIIPAGVPRKP-------GMTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       115 ADvVIi~ag~~~~~-------g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .|++|..||.....       ..+.   ...+..|+.....+++.+..+- ..+.|+++|.....          .  +.
T Consensus        86 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~----------~--~~  153 (271)
T PRK06505         86 LDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGST----------R--VM  153 (271)
T ss_pred             CCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcc----------c--cC
Confidence            89999999864311       1111   2234556554444444333221 23666666543221          0  23


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEE
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V  218 (270)
                      |..-.++.++-.-..+-+.+|.+++  +..|++..
T Consensus       154 ~~~~~Y~asKaAl~~l~r~la~el~--~~gIrVn~  186 (271)
T PRK06505        154 PNYNVMGVAKAALEASVRYLAADYG--PQGIRVNA  186 (271)
T ss_pred             CccchhhhhHHHHHHHHHHHHHHHh--hcCeEEEE
Confidence            3333466665555567788888874  34454433

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.50  E-value=0.08  Score=47.10  Aligned_cols=158  Identities=13%  Similarity=0.175  Sum_probs=82.6

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCcc-ee-eeeccCCHHH-------HhCC
Q 024248           47 FKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV-VR-GFLGQQQLED-------ALTG  114 (270)
Q Consensus        47 mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~-~~-~i~~t~d~~~-------al~~  114 (270)
                      +.+.|+||++  -+|..++..|++.|.  .|++.+++.. .....++........ +. .+....++++       .+..
T Consensus         7 k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   84 (262)
T PRK07984          7 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK   84 (262)
T ss_pred             CEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence            4689999853  699999999999998  8999988632 122223322100000 00 0111111221       1234


Q ss_pred             CCEEEEcCCCCCCC--------CCchh---hhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          115 MDIVIIPAGVPRKP--------GMTRD---DLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       115 ADvVIi~ag~~~~~--------g~~r~---~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .|++|..+|.....        ..+..   ..+..|+.....+.+.+... .+.+.|+++|.-...            ..
T Consensus        85 iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~------------~~  152 (262)
T PRK07984         85 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------RA  152 (262)
T ss_pred             CCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC------------CC
Confidence            79999999864211        11111   22345655443444443322 234667666643220            01


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++..-..+-+.+|..++  +..|++..+-
T Consensus       153 ~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~i~  188 (262)
T PRK07984        153 IPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  188 (262)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHhc--ccCcEEeeee
Confidence            23333466666555667888888874  4456554444

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=96.50  E-value=0.01  Score=50.99  Aligned_cols=76  Identities=21%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ....+|+|||.+..||..++.+|+.++.  .|+++|++.-.-  ....+.|..+  ....  .+.++.+.++.||+||.+
T Consensus        60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~--~~~~l~~~~~~ADIVIsA  133 (197)
T cd01079          60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTD--EEAMTLDCLSQSDVVITG  133 (197)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccc--hhhHHHHHhhhCCEEEEc
Confidence            4456999999999999999999999887  999999864210  0111112110  0000  011266788999999999


Q ss_pred             CCCC
Q 024248          122 AGVP  125 (270)
Q Consensus       122 ag~~  125 (270)
                      +|.+
T Consensus       134 vG~~  137 (197)
T cd01079         134 VPSP  137 (197)
T ss_pred             cCCC
Confidence            9866

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.49  E-value=0.024  Score=43.67  Aligned_cols=91  Identities=19%  Similarity=0.204  Sum_probs=56.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeec-cCC---HHH-HhCCCCEEEEcCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LED-ALTGMDIVIIPAG  123 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~-t~d---~~~-al~~ADvVIi~ag  123 (270)
                      |.|+|. |.+|..++..|...+.  +|+++|.++..  ...+.... ..   .+.+ .++   +++ .+++||.||++.+
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~--~vvvid~d~~~--~~~~~~~~-~~---~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGI--DVVVIDRDPER--VEELREEG-VE---VIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTS--EEEEEESSHHH--HHHHHHTT-SE---EEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCC--EEEEEECCcHH--HHHHHhcc-cc---cccccchhhhHHhhcCccccCEEEEccC
Confidence            679998 9999999999999776  99999998542  22222111 01   1111 112   222 4679999999853


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .         +  ..|    ..++..+++..|+..++...
T Consensus        72 ~---------d--~~n----~~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   72 D---------D--EEN----LLIALLARELNPDIRIIARV   96 (116)
T ss_dssp             S---------H--HHH----HHHHHHHHHHTTTSEEEEEE
T ss_pred             C---------H--HHH----HHHHHHHHHHCCCCeEEEEE
Confidence            1         1  334    45667778888887666554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.49  E-value=0.18  Score=44.03  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=29.3

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCC
Q 024248           47 FKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        47 mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      .+|.|+||+|  .+|..++..|+.+|.  +|++++++
T Consensus         6 k~vlItGas~~~giG~~la~~l~~~G~--~vi~~~r~   40 (256)
T PRK12748          6 KIALVTGASRLNGIGAAVCRRLAAKGI--DIFFTYWS   40 (256)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHcCC--cEEEEcCC
Confidence            4799999974  699999999999998  99999876

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.48  E-value=0.16  Score=46.31  Aligned_cols=115  Identities=17%  Similarity=0.288  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccc-cCcceeeeec-------cCCHHHHhCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD-TNAVVRGFLG-------QQQLEDALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~-~~~~~~~i~~-------t~d~~~al~~A  115 (270)
                      .-.|.|+||++-+|..+|..++++|.  .+++.|+++.  ...+..+.+.. .....-.++.       ....++.+.+.
T Consensus        38 g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V  115 (300)
T KOG1201|consen   38 GEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDV  115 (300)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCc
Confidence            34799999988999999999999998  9999999874  11222232210 0000000110       11245567899


Q ss_pred             CEEEEcCCCCC-CCC--Cchhh---hHHhh----HHHHHHHHHHHhHhCCCCEEEEec
Q 024248          116 DIVIIPAGVPR-KPG--MTRDD---LFNIN----AGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       116 DvVIi~ag~~~-~~g--~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      |++|..||... ++-  .++.+   .++.|    ...++++++.+.+. +++.|+.++
T Consensus       116 ~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~Ia  172 (300)
T KOG1201|consen  116 DILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIA  172 (300)
T ss_pred             eEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEeh
Confidence            99999998642 221  12211   22333    35678899999875 466665554

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.47  E-value=0.23  Score=43.78  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=30.1

Q ss_pred             CeEEEEcC--CCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa--~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.++|+|+  ++-+|..++..|+..|.  .|++.|++.
T Consensus         8 k~~lItGa~~s~GIG~a~a~~la~~G~--~v~l~~r~~   43 (256)
T PRK07889          8 KRILVTGVITDSSIAFHVARVAQEQGA--EVVLTGFGR   43 (256)
T ss_pred             CEEEEeCCCCcchHHHHHHHHHHHCCC--EEEEecCcc
Confidence            47999998  68999999999999998  999998764

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.47  E-value=0.011  Score=54.42  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|+|. |.||..++..+...|.  +|..+|.....    +.. .          ...++++.++.||+|++...
T Consensus       145 l~gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~~----~~~-~----------~~~~l~ell~~sDiv~l~~P  206 (314)
T PRK06932        145 VRGSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGAS----VCR-E----------GYTPFEEVLKQADIVTLHCP  206 (314)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCccc----ccc-c----------ccCCHHHHHHhCCEEEEcCC
Confidence            34569999997 9999999999988888  99999864210    000 0          11368899999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ...   .++ .++  |    .+.+..+   .|++++||++
T Consensus       207 lt~---~T~-~li--~----~~~l~~m---k~ga~lIN~a  233 (314)
T PRK06932        207 LTE---TTQ-NLI--N----AETLALM---KPTAFLINTG  233 (314)
T ss_pred             CCh---HHh-ccc--C----HHHHHhC---CCCeEEEECC
Confidence            221   111 111  1    2333443   4789999987

>PRK07041 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.016  Score=49.75  Aligned_cols=110  Identities=12%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee--eeeccCCHHHHhC---CCCEEEEcC
Q 024248           50 AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDALT---GMDIVIIPA  122 (270)
Q Consensus        50 ~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~--~i~~t~d~~~al~---~ADvVIi~a  122 (270)
                      .|+||+|.+|..++..|+++|.  +|++++++....  ...++... ......  .+....+++++++   ..|++|..+
T Consensus         1 lItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~a   77 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGGG-APVRTAALDITDEAAVDAFFAEAGPFDHVVITA   77 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHhcCCCCEEEECC
Confidence            3899999999999999999998  999999874321  11222111 011000  0111122333333   479999998


Q ss_pred             CCCCCCC---C---chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          123 GVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       123 g~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      |......   .   ...+.+..|+.....+.+.. .....+.++++|
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-~~~~~g~iv~~s  123 (230)
T PRK07041         78 ADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAA-RIAPGGSLTFVS  123 (230)
T ss_pred             CCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhh-hhcCCeEEEEEC
Confidence            8642210   1   12234566766666666632 223345565554

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.46  E-value=0.011  Score=54.42  Aligned_cols=90  Identities=21%  Similarity=0.232  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|+|- |.||..+|..+...|.  +|..||+....   .   +.    .+.    ..++++.++.||+|++...
T Consensus       143 L~gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~---~---~~----~~~----~~~l~ell~~sDvv~lh~P  205 (311)
T PRK08410        143 IKGKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN---K---NE----EYE----RVSLEELLKTSDIISIHAP  205 (311)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc---c---cc----Cce----eecHHHHhhcCCEEEEeCC
Confidence            44568999997 9999999999988888  99999984211   0   00    001    1368889999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ...   .++ .++  |    .+.++.+   .|++++||++
T Consensus       206 lt~---~T~-~li--~----~~~~~~M---k~~a~lIN~a  232 (311)
T PRK08410        206 LNE---KTK-NLI--A----YKELKLL---KDGAILINVG  232 (311)
T ss_pred             CCc---hhh-ccc--C----HHHHHhC---CCCeEEEECC
Confidence            221   111 111  1    2333444   4889999997

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.46  E-value=0.011  Score=49.53  Aligned_cols=56  Identities=30%  Similarity=0.503  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCCCc-hHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~-VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      -...||+|+|+ |. +|..++..|..+|.  +|+++++..                       .++.+.+++||+||.+.
T Consensus        42 l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat   95 (168)
T cd01080          42 LAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV   95 (168)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence            34469999998 86 58889999998887  788888641                       24567789999999998


Q ss_pred             CCC
Q 024248          123 GVP  125 (270)
Q Consensus       123 g~~  125 (270)
                      +.+
T Consensus        96 ~~~   98 (168)
T cd01080          96 GKP   98 (168)
T ss_pred             CCC
Confidence            765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.44  E-value=0.0093  Score=54.18  Aligned_cols=57  Identities=21%  Similarity=0.354  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|||.||.||..++..|+..|.  .|+++..                       .|.++++.+++||+||.++|
T Consensus       156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s-----------------------~t~~l~~~~~~ADIVI~avg  210 (284)
T PRK14179        156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHS-----------------------RTRNLAEVARKADILVVAIG  210 (284)
T ss_pred             CCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECC-----------------------CCCCHHHHHhhCCEEEEecC
Confidence            4457999999999999999999999998  8887722                       12357788999999999987


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       211 ~~  212 (284)
T PRK14179        211 RG  212 (284)
T ss_pred             cc
Confidence            66

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.43  E-value=0.012  Score=53.60  Aligned_cols=57  Identities=19%  Similarity=0.382  Sum_probs=46.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+..+|+|+|.++.||..++..|..++.  .|+.++.+                       |.++++.+++||+||.++|
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAvg  210 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAVG  210 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECCC
Confidence            4457999999955599999999998887  88888652                       2356678999999999998


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       211 ~p  212 (286)
T PRK14175        211 KP  212 (286)
T ss_pred             CC
Confidence            65

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.42  E-value=0.011  Score=55.01  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+..||+|+|+ |-+|+.++..|+..|+ ++++++|.+.
T Consensus        22 L~~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence            44568999998 9999999999999997 5999999984

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.086  Score=48.09  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+.+.|+||++.+|..++..|+..|.  .|++++++.
T Consensus         8 ~k~~lITGgs~GIG~aia~~la~~G~--~Vv~~~r~~   42 (305)
T PRK08303          8 GKVALVAGATRGAGRGIAVELGAAGA--TVYVTGRST   42 (305)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeccc
Confidence            34789999999999999999999998  999999873

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.39  E-value=0.042  Score=55.27  Aligned_cols=137  Identities=16%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCH---H-HHhCCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---E-DALTGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~---~-~al~~ADvVIi~  121 (270)
                      ..+|.|+|. |.+|..++..|..++.  +++++|.|++..  ..+.+.. ..-+.  -..++.   + ..+.+||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~v--~~~~~~g-~~v~~--GDat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDHI--ETLRKFG-MKVFY--GDATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHHH--HHHHhcC-CeEEE--EeCCCHHHHHhcCCCcCCEEEEE
Confidence            358999998 9999999999999998  999999986432  2222211 11111  111222   2 235689999998


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~  200 (270)
                      ....           +.|    ..++..+++..|+..++.-+ ++.+      .+.+.+. |.  +.++--+...+.++-
T Consensus       472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~------~~~L~~~-Ga--d~v~~e~~e~sl~l~  527 (621)
T PRK03562        472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDH------YIRLRQA-GV--EKPERETFEGALKSG  527 (621)
T ss_pred             eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHC-CC--CEEehhhHhHHHHHH
Confidence            5211           334    34666777778987665544 4433      2233332 32  334333444455566


Q ss_pred             HHHHHHhCCCCCcc
Q 024248          201 TFVAEVLGLDPREV  214 (270)
Q Consensus       201 ~~lA~~l~v~~~~v  214 (270)
                      +.+-+.+|+++.++
T Consensus       528 ~~~L~~lg~~~~~~  541 (621)
T PRK03562        528 RLVLESLGLGPYEA  541 (621)
T ss_pred             HHHHHHcCCCHHHH
Confidence            66667777777665

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.38  E-value=0.032  Score=53.43  Aligned_cols=122  Identities=23%  Similarity=0.282  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH---HHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~---~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .++|.|+|+ |.+|..+|..|+..|+  +|+++|.+.....   ..++...    .+..+. .....+...++|+||.++
T Consensus         5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~-~~~~~~~~~~~d~vv~~~   76 (450)
T PRK14106          5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVL-GEYPEEFLEGVDLVVVSP   76 (450)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEe-CCcchhHhhcCCEEEECC
Confidence            458999998 8899999999999999  9999999752211   1223211    111111 111224457899999998


Q ss_pred             CCCCCCCCchhhh-HHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC--CcHHHHHHHHHH
Q 024248          123 GVPRKPGMTRDDL-FNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKK  179 (270)
Q Consensus       123 g~~~~~g~~r~~~-~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~--~~~~i~t~~~~~  179 (270)
                      |.+..  ...... -+.+++++.......+. .+ ..+|-+|....  +++.+++.++..
T Consensus        77 g~~~~--~~~~~~a~~~~i~~~~~~~~~~~~-~~-~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         77 GVPLD--SPPVVQAHKKGIEVIGEVELAYRF-SK-APIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CCCCC--CHHHHHHHHCCCcEEeHHHHHHhh-cC-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence            86532  111111 12344444444433332 23 34555654433  233666666654

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.38  E-value=0.025  Score=54.06  Aligned_cols=63  Identities=22%  Similarity=0.356  Sum_probs=47.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      -..++|+|+|. |.||..+|..+...|+  +|..||+....    ...      ..   ....++++.++.||+|++..
T Consensus       149 L~gktvGIiG~-G~IG~~vA~~~~~fGm--~V~~~d~~~~~----~~~------~~---~~~~~l~ell~~sDiVslh~  211 (409)
T PRK11790        149 VRGKTLGIVGY-GHIGTQLSVLAESLGM--RVYFYDIEDKL----PLG------NA---RQVGSLEELLAQSDVVSLHV  211 (409)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCccc----ccC------Cc---eecCCHHHHHhhCCEEEEcC
Confidence            44568999997 9999999999998888  99999974211    000      00   11236889999999999986

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.37  E-value=0.013  Score=53.28  Aligned_cols=57  Identities=23%  Similarity=0.410  Sum_probs=45.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+..+|+|+|++|.+|..++..|+..|.  .|+++++.                       +.++++.+++||+||.+.|
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG  211 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVG  211 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccC
Confidence            4456999999955699999999998887  89988752                       1245567799999999986


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       212 ~~  213 (283)
T PRK14192        212 KP  213 (283)
T ss_pred             CC
Confidence            43

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=96.37  E-value=0.052  Score=59.08  Aligned_cols=118  Identities=12%  Similarity=0.022  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC--CccEEEEEeCCCChhHH-HHhhcc---------ccCcceeeee---------
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVT-ADISHM---------DTNAVVRGFL---------  103 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g--~~~eV~LvD~~~~~~~~-~dl~~~---------~~~~~~~~i~---------  103 (270)
                      .+++|.|+|++||+|++++..|+.++  ...+|+++.+....... ..+.+.         .....+..+.         
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            35789999999999999999888776  22377777775421111 111100         0000111111         


Q ss_pred             -ccCCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          104 -GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       104 -~t~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                       ....+++...++|+||++|+... .......+...|+..+.++++.+.+.....++.+.|
T Consensus      1050 l~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS 1109 (1389)
T TIGR03443      1050 LSDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSS 1109 (1389)
T ss_pred             cCHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeC
Confidence             01124455678999999987542 122333444579999999999988654443333333

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.32  E-value=0.079  Score=49.08  Aligned_cols=127  Identities=16%  Similarity=0.295  Sum_probs=74.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC----C-CccEEEEEeCCCC-hh---HHHHhhccc---c-C-cc--ee-eeecc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKIN----P-LVSVLHLYDVVNT-PG---VTADISHMD---T-N-AV--VR-GFLGQ  105 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~----g-~~~eV~LvD~~~~-~~---~~~dl~~~~---~-~-~~--~~-~i~~t  105 (270)
                      ...+.||+|+|+ |.=|++++..+...    + +..+|...-..+. .+   ...|.-...   . + +.  +. .+...
T Consensus        18 ~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv   96 (372)
T KOG2711|consen   18 ERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAV   96 (372)
T ss_pred             hcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEec
Confidence            445679999996 99999999776542    1 1235555544332 22   122222111   0 0 11  11 13457


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCC-----cHHHHHHHHHH
Q 024248          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-----TVPIAAEVFKK  179 (270)
Q Consensus       106 ~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~-----~~~i~t~~~~~  179 (270)
                      +|+.++++|||++|+..  |              .+.+.++++.|..+- |++..|-.+.-+++     ...++++++.+
T Consensus        97 ~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~  160 (372)
T KOG2711|consen   97 PDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR  160 (372)
T ss_pred             chHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence            89999999999999975  2              234466778887665 56655544322221     12257777878


Q ss_pred             hCCCCCC
Q 024248          180 VGTYDPK  186 (270)
Q Consensus       180 ~sg~p~~  186 (270)
                      ..|.|-.
T Consensus       161 ~lgI~~~  167 (372)
T KOG2711|consen  161 ALGIPCS  167 (372)
T ss_pred             HhCCCce
Confidence            7787766

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=96.32  E-value=0.13  Score=45.33  Aligned_cols=154  Identities=16%  Similarity=0.188  Sum_probs=80.2

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCChh----HHHHhhccccCc-cee-eeeccCCH-------HHH
Q 024248           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNA-VVR-GFLGQQQL-------EDA  111 (270)
Q Consensus        47 mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~~~----~~~dl~~~~~~~-~~~-~i~~t~d~-------~~a  111 (270)
                      +.+.|+||+  +-+|..++..|+..|.  +|++.+++...+    ...++....... .+. .+....+.       .+.
T Consensus         7 k~~lItGas~~~GIG~aia~~la~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          7 KKALVTGIANNRSIAWGIAQQLHAAGA--ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             cEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            468999985  5899999999999998  888886543211    112222110000 000 01111111       122


Q ss_pred             hCCCCEEEEcCCCCCC---CC----Cch---hhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHH
Q 024248          112 LTGMDIVIIPAGVPRK---PG----MTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~---~g----~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~  177 (270)
                      +...|++|.++|....   .+    .+.   ...+..|+...    +.+.+.+++   .+.|+++|.....         
T Consensus        85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~---~g~Iv~isS~~~~---------  152 (258)
T PRK07370         85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE---GGSIVTLTYLGGV---------  152 (258)
T ss_pred             cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh---CCeEEEEeccccc---------
Confidence            3468999999986421   01    111   22344554443    444444432   3667666643221         


Q ss_pred             HHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       178 ~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                         .++|..-.++.++-.-..+-+.++.+++  +..|++..+
T Consensus       153 ---~~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~Vn~i  189 (258)
T PRK07370        153 ---RAIPNYNVMGVAKAALEASVRYLAAELG--PKNIRVNAI  189 (258)
T ss_pred             ---cCCcccchhhHHHHHHHHHHHHHHHHhC--cCCeEEEEE
Confidence               0233333456655555567778888875  445554443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.32  E-value=0.011  Score=49.27  Aligned_cols=67  Identities=21%  Similarity=0.269  Sum_probs=43.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      ..++++|+|= |.+|..+|..|...|.  .|..+|+++..... -..+.  +      . +.+++++++.+|++|.+.|.
T Consensus        22 ~Gk~vvV~GY-G~vG~g~A~~lr~~Ga--~V~V~e~DPi~alq-A~~dG--f------~-v~~~~~a~~~adi~vtaTG~   88 (162)
T PF00670_consen   22 AGKRVVVIGY-GKVGKGIARALRGLGA--RVTVTEIDPIRALQ-AAMDG--F------E-VMTLEEALRDADIFVTATGN   88 (162)
T ss_dssp             TTSEEEEE---SHHHHHHHHHHHHTT---EEEEE-SSHHHHHH-HHHTT---------E-EE-HHHHTTT-SEEEE-SSS
T ss_pred             CCCEEEEeCC-CcccHHHHHHHhhCCC--EEEEEECChHHHHH-hhhcC--c------E-ecCHHHHHhhCCEEEECCCC
Confidence            3458999998 9999999999999998  99999998643211 11221  1      1 22578999999998887664

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.31  E-value=0.34  Score=43.23  Aligned_cols=160  Identities=13%  Similarity=0.133  Sum_probs=84.8

Q ss_pred             CCCCeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhcc-ccCccee-eeeccCCHH-------HH
Q 024248           44 SPGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVR-GFLGQQQLE-------DA  111 (270)
Q Consensus        44 ~~~mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~-~~~~~~~-~i~~t~d~~-------~a  111 (270)
                      .+.+++.|+||+  +-+|..++..|+..|.  .|++.++++. .....++... .....+. .+....+.+       +.
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~--~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGA--ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence            334579999985  6799999999999998  9999876532 1111222111 0000000 011111111       22


Q ss_pred             hCCCCEEEEcCCCCCC-----C--CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          112 LTGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                      +...|++|..||....     +  ..+   ....+..|+.....+++.+...- ..+.++++|.....            
T Consensus        86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~------------  153 (272)
T PRK08159         86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE------------  153 (272)
T ss_pred             cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc------------
Confidence            3467999999986421     0  111   22345667655555555544432 24666666532220            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .+.|..-.++.++-....+-+.++..+.  +..|++..+
T Consensus       154 ~~~p~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v  190 (272)
T PRK08159        154 KVMPHYNVMGVAKAALEASVKYLAVDLG--PKNIRVNAI  190 (272)
T ss_pred             cCCCcchhhhhHHHHHHHHHHHHHHHhc--ccCeEEEEe
Confidence            0233334466666555667777888774  344544433

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.31  E-value=0.014  Score=53.34  Aligned_cols=57  Identities=21%  Similarity=0.404  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+..+|+|+|.+|.+|..+|..|+..|.  +|++++..                       |.+++++++.||+||.+.|
T Consensus       156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~--tVtv~~~r-----------------------T~~l~e~~~~ADIVIsavg  210 (296)
T PRK14188        156 LSGLNAVVIGRSNLVGKPMAQLLLAANA--TVTIAHSR-----------------------TRDLPAVCRRADILVAAVG  210 (296)
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHhCCC--EEEEECCC-----------------------CCCHHHHHhcCCEEEEecC
Confidence            4567999999889999999999999998  99888532                       1135677899999999987


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       211 ~~  212 (296)
T PRK14188        211 RP  212 (296)
T ss_pred             Ch
Confidence            55

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.31  E-value=0.015  Score=54.22  Aligned_cols=34  Identities=29%  Similarity=0.370  Sum_probs=26.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEE-EEEeC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYDV   80 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV-~LvD~   80 (270)
                      .+||+|+||+|++|..++..|...+.+ ++ .+.|.
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~-elv~v~~~   36 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEV-EIVAVTSR   36 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEECc
Confidence            369999999999999999888877544 55 45653

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.29  E-value=0.015  Score=52.87  Aligned_cols=57  Identities=23%  Similarity=0.366  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|.++.||..++.+|..++.  .|++++.                       .|.|+++.++.||+||.++|
T Consensus       156 l~Gk~vvViGrs~iVGkPla~lL~~~~a--tVt~~hs-----------------------~t~~l~~~~~~ADIVV~avG  210 (285)
T PRK14189        156 LRGAHAVVIGRSNIVGKPMAMLLLQAGA--TVTICHS-----------------------KTRDLAAHTRQADIVVAAVG  210 (285)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEecC-----------------------CCCCHHHHhhhCCEEEEcCC
Confidence            3457999999988889999999998887  8877532                       14577788999999999998


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       211 ~~  212 (285)
T PRK14189        211 KR  212 (285)
T ss_pred             Cc
Confidence            54

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.28  E-value=0.029  Score=48.28  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+..||+|+|+ |-+|+.++..|+..|. ++++++|.+.
T Consensus        19 l~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            44568999998 9999999999999987 5999999883

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.27  E-value=0.058  Score=42.21  Aligned_cols=72  Identities=25%  Similarity=0.323  Sum_probs=39.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEE-eCCCChhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D~~~~~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ||+|+|++|.+|..++..+...+.+ +++.+ +++...+......+.... .....+ ...+++  ..++|+||++.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~DvV~~~~~   74 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLEL-EPEDFE--ELAVDIVFLALP   74 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCccccccccccc-ccCChh--hcCCCEEEEcCC
Confidence            6899998799999999888885333 55555 654322221111111000 000001 113442  358999999863

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.27  E-value=0.0034  Score=52.41  Aligned_cols=38  Identities=37%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        42 ~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+.++.||+|+|+ |.+|...+..+...|.  +++.+|...
T Consensus        16 ~~~~p~~vvv~G~-G~vg~gA~~~~~~lGa--~v~~~d~~~   53 (168)
T PF01262_consen   16 GGVPPAKVVVTGA-GRVGQGAAEIAKGLGA--EVVVPDERP   53 (168)
T ss_dssp             TEE-T-EEEEEST-SHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred             CCCCCeEEEEECC-CHHHHHHHHHHhHCCC--EEEeccCCH
Confidence            4667789999998 9999999999999898  999999874

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN02306 hydroxypyruvate reductase

Probab=96.27  E-value=0.034  Score=52.73  Aligned_cols=103  Identities=22%  Similarity=0.280  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEeCCCChhHH---HHhhc---cccCcceeeeeccCCHHHHhCCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISH---MDTNAVVRGFLGQQQLEDALTGMD  116 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~-~~g~~~eV~LvD~~~~~~~~---~dl~~---~~~~~~~~~i~~t~d~~~al~~AD  116 (270)
                      ...++|+|+|. |.||+.+|..+. ..|.  +|..||+.......   ..+..   ........ +....++++.++.||
T Consensus       163 L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~L~ell~~sD  238 (386)
T PLN02306        163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVT-WKRASSMEEVLREAD  238 (386)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccc-ccccCCHHHHHhhCC
Confidence            44568999997 999999999875 6677  99999986421110   01100   00000000 111347899999999


Q ss_pred             EEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       117 vVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +|++.+...  + .++ .++  |    .+.++.|   .|++++||++
T Consensus       239 iV~lh~Plt--~-~T~-~li--n----~~~l~~M---K~ga~lIN~a  272 (386)
T PLN02306        239 VISLHPVLD--K-TTY-HLI--N----KERLALM---KKEAVLVNAS  272 (386)
T ss_pred             EEEEeCCCC--h-hhh-hhc--C----HHHHHhC---CCCeEEEECC
Confidence            999975321  1 111 111  1    2333343   3789999987

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.26  E-value=0.051  Score=44.07  Aligned_cols=116  Identities=18%  Similarity=0.179  Sum_probs=67.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh----HHHHhhccccCcceeeee-ccCC----------HHHHh
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~----~~~dl~~~~~~~~~~~i~-~t~d----------~~~al  112 (270)
                      .+.|+||+|-+|..++..|+++|. ..|+++++++...    ...++....  ..+..+. ..++          ..+..
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence            588999999999999999999843 3888888872111    112232111  1111111 0111          12234


Q ss_pred             CCCCEEEEcCCCCCCCCCc------hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          113 TGMDIVIIPAGVPRKPGMT------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      ...|++|.++|........      -...+..|+.....+.+.+.. .+.+.|+++|....
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~~  138 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIAG  138 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGGG
T ss_pred             ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchhh
Confidence            5889999999876521111      123456676666666666665 45677777775443

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.26  E-value=0.18  Score=44.47  Aligned_cols=157  Identities=12%  Similarity=0.119  Sum_probs=82.5

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhcc-ccCccee-eeeccCCHH-------HHhCC
Q 024248           47 FKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVR-GFLGQQQLE-------DALTG  114 (270)
Q Consensus        47 mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~-~~~~~~~-~i~~t~d~~-------~al~~  114 (270)
                      +.+.|+||++  -+|..++..|+..|.  .|++.++++. .....++... .....+. .+....+.+       +.+..
T Consensus         9 k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (260)
T PRK06603          9 KKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS   86 (260)
T ss_pred             cEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4688999965  599999999999998  8999887632 1122233221 0000000 011111111       22356


Q ss_pred             CCEEEEcCCCCCC-----C--CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          115 MDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       115 ADvVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .|++|..+|....     +  ..+   ....+..|+.....+++.+...- ..+.|++++.....            .+.
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~------------~~~  154 (260)
T PRK06603         87 FDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAE------------KVI  154 (260)
T ss_pred             ccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccc------------cCC
Confidence            8999998875321     1  111   12234556555444444433221 34677777643321            023


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      |..-.++.++-.-..|-+.+|.+++  +..|++..+
T Consensus       155 ~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v  188 (260)
T PRK06603        155 PNYNVMGVAKAALEASVKYLANDMG--ENNIRVNAI  188 (260)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            3333466665555667788888775  344544333

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.25  E-value=0.05  Score=52.55  Aligned_cols=72  Identities=19%  Similarity=0.335  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCCchHHH-HHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~-la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.+||.|+|. |..|.+ +|..|...|+  +|.+.|.+... ...+|....    +..+. ..+ .+.+.++|+||.+.|
T Consensus         6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~-~~~-~~~~~~~d~vv~spg   75 (461)
T PRK00421          6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLELG----AIIFI-GHD-AENIKDADVVVYSSA   75 (461)
T ss_pred             CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHCC----CEEeC-CCC-HHHCCCCCEEEECCC
Confidence            3458999998 999999 7999999999  99999986542 122343221    11111 113 355789999999988


Q ss_pred             CCC
Q 024248          124 VPR  126 (270)
Q Consensus       124 ~~~  126 (270)
                      .+.
T Consensus        76 i~~   78 (461)
T PRK00421         76 IPD   78 (461)
T ss_pred             CCC
Confidence            874

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.25  E-value=0.016  Score=52.75  Aligned_cols=57  Identities=26%  Similarity=0.433  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|.|..||..++.+|..++.  .|+++..                       .|.|+++.++.||+||.++|
T Consensus       153 l~Gk~vvViGrS~iVGkPla~lL~~~~a--TVtichs-----------------------~T~~l~~~~~~ADIvIsAvG  207 (287)
T PRK14173        153 LAGKEVVVVGRSNIVGKPLAALLLREDA--TVTLAHS-----------------------KTQDLPAVTRRADVLVVAVG  207 (287)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEecC
Confidence            3457999999999999999999998876  7776632                       24567788999999999998


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       208 kp  209 (287)
T PRK14173        208 RP  209 (287)
T ss_pred             Cc
Confidence            76

>PLN02858 fructose-bisphosphate aldolase

Probab=96.24  E-value=0.026  Score=61.59  Aligned_cols=66  Identities=8%  Similarity=0.106  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ..||++||. |.+|..+|..|+..|+  +|+.||++...  ..++.....       ....++.++.++||+||++..
T Consensus         4 ~~~IGfIGL-G~MG~~mA~~L~~~G~--~v~v~dr~~~~--~~~l~~~Ga-------~~~~s~~e~a~~advVi~~l~   69 (1378)
T PLN02858          4 AGVVGFVGL-DSLSFELASSLLRSGF--KVQAFEISTPL--MEKFCELGG-------HRCDSPAEAAKDAAALVVVLS   69 (1378)
T ss_pred             CCeEEEEch-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcCC-------eecCCHHHHHhcCCEEEEEcC
Confidence            358999997 9999999999999999  99999997542  233333211       113467788999999999863

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.23  E-value=0.092  Score=45.29  Aligned_cols=71  Identities=11%  Similarity=0.081  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +..||+|||+ |.+|...+..|...|.  +|++++..... ...++.+..   .+......-. ++.+.++|+||.+.+
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~   79 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN   79 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence            3459999998 9999999999999887  99999864322 222333221   1111111112 356899999888753

>PRK06487 glycerate dehydrogenase; Provisional

Probab=96.22  E-value=0.019  Score=53.04  Aligned_cols=88  Identities=19%  Similarity=0.273  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|. |.||..+|..+...|+  +|..+|+.....      ..          ...++++.++.||+|++...
T Consensus       146 l~gktvgIiG~-G~IG~~vA~~l~~fgm--~V~~~~~~~~~~------~~----------~~~~l~ell~~sDiv~l~lP  206 (317)
T PRK06487        146 LEGKTLGLLGH-GELGGAVARLAEAFGM--RVLIGQLPGRPA------RP----------DRLPLDELLPQVDALTLHCP  206 (317)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCCcc------cc----------cccCHHHHHHhCCEEEECCC
Confidence            34568999997 9999999999988888  999999742110      00          01268889999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ...   .++ .+  -|    .+.+..+   .|++++||++
T Consensus       207 lt~---~T~-~l--i~----~~~~~~m---k~ga~lIN~a  233 (317)
T PRK06487        207 LTE---HTR-HL--IG----ARELALM---KPGALLINTA  233 (317)
T ss_pred             CCh---HHh-cC--cC----HHHHhcC---CCCeEEEECC
Confidence            221   111 11  12    2334444   3789999997

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.20  E-value=0.06  Score=44.60  Aligned_cols=68  Identities=10%  Similarity=0.042  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .+..||+|+|| |.||...+..|+..|.  +|++++..... ...++..    ..+  ....-. ++.++++|+||.+.
T Consensus        11 l~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~~----i~~--~~~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         11 LHNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELPY----ITW--KQKTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhccC----cEE--EecccC-hhcCCCceEEEECC
Confidence            34568999998 9999999999999998  99999743221 2222211    111  011111 24588999998874

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=96.20  E-value=0.035  Score=44.61  Aligned_cols=112  Identities=21%  Similarity=0.150  Sum_probs=63.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--H---HHHhhccccCcceeee----eccCCHHHH-------
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--V---TADISHMDTNAVVRGF----LGQQQLEDA-------  111 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~---~~dl~~~~~~~~~~~i----~~t~d~~~a-------  111 (270)
                      ++.|+|++|.+|.+++..|+++|. ..|++.++++...  .   ..++....  ..+..+    ....++++.       
T Consensus         2 ~~li~Ga~~~iG~~~~~~l~~~g~-~~v~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (180)
T smart00822        2 TYLITGGLGGLGLELARWLAERGA-RHLVLLSRSGPDAPGAAELLAELEALG--AEVTVVACDVADRAALAAALAAIPAR   78 (180)
T ss_pred             EEEEEcCCChHHHHHHHHHHHhhC-CeEEEEeCCCCCCccHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999988875 2577777754311  1   12222111  111101    000112222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....|.||+++|......   .+   ....+..|+.....+.+.+.+..+ ..++++|
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~ii~~s  135 (180)
T smart00822       79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPL-DFFVLFS  135 (180)
T ss_pred             cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCc-ceEEEEc
Confidence            234699999998542111   11   123467788888888888865433 3455554

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.20  E-value=0.027  Score=55.77  Aligned_cols=97  Identities=9%  Similarity=0.064  Sum_probs=59.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC---HH-HHhCCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LE-DALTGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d---~~-~al~~ADvVIi~  121 (270)
                      +.+|.|+|. |.+|..++..|.++|+  +++++|.|++.  ..++.+.+ ...+.  -..+|   ++ ..+++||.|+++
T Consensus       417 ~~hiiI~G~-G~~G~~la~~L~~~g~--~vvvId~d~~~--~~~~~~~g-~~~i~--GD~~~~~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        417 CNHALLVGY-GRVGSLLGEKLLAAGI--PLVVIETSRTR--VDELRERG-IRAVL--GNAANEEIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CCCEEEECC-ChHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHCC-CeEEE--cCCCCHHHHHhcCccccCEEEEE
Confidence            358999998 9999999999999998  99999998643  22222211 11111  01112   22 235689988887


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CC
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NP  165 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NP  165 (270)
                      .+..           .+|.    .++..+++.+|+..++.-. +|
T Consensus       489 ~~~~-----------~~~~----~iv~~~~~~~~~~~iiar~~~~  518 (558)
T PRK10669        489 IPNG-----------YEAG----EIVASAREKRPDIEIIARAHYD  518 (558)
T ss_pred             cCCh-----------HHHH----HHHHHHHHHCCCCeEEEEECCH
Confidence            5211           2333    3444556667887665544 44

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.18  E-value=0.018  Score=53.30  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ..+..+|+|||- |.+|..+|..|...|+  +|+.+|+...   ..+....+.   ..    ..+++++++.||+|+++.
T Consensus        13 ~LkgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~~---s~~~A~~~G---~~----v~sl~Eaak~ADVV~llL   79 (335)
T PRK13403         13 LLQGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPGK---SFEVAKADG---FE----VMSVSEAVRTAQVVQMLL   79 (335)
T ss_pred             hhCcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcch---hhHHHHHcC---CE----ECCHHHHHhcCCEEEEeC
Confidence            345568999997 9999999999999999  9999986421   111111110   11    126789999999999986

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=96.18  E-value=0.046  Score=49.95  Aligned_cols=113  Identities=11%  Similarity=0.001  Sum_probs=63.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhH--HHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGV--TADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      ..+.|+||++.+|..++..|+.+| .  .|++.+++.....  ..++....  ..+..    +...++.+++       .
T Consensus         4 k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         4 PTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMPK--DSYTIMHLDLGSLDSVRQFVQQFRESG   79 (314)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            478999999999999999999999 7  9999998753221  12222110  11110    1111111111       2


Q ss_pred             CCCCEEEEcCCCCCCC----CCch---hhhHHhhHHH----HHHHHHHHhHhCC-CCEEEEec
Q 024248          113 TGMDIVIIPAGVPRKP----GMTR---DDLFNINAGI----VKTLCEGIAKCCP-KAIVNLIS  163 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~----g~~r---~~~~~~N~~i----~~~i~~~i~~~~p-~a~viv~s  163 (270)
                      ...|++|..||.....    ..+.   ...+..|+..    ++.+.+.+++... .+.|+++|
T Consensus        80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vs  142 (314)
T TIGR01289        80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVG  142 (314)
T ss_pred             CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            4689999999863211    1111   2234556544    4555666654322 35666665

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.18  E-value=0.034  Score=51.86  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+..||+|+|+ |.+|+.++..|+..|. ++|+++|.+.
T Consensus        22 L~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            44568999998 9999999999999997 6999999974

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.18  E-value=0.01  Score=51.07  Aligned_cols=31  Identities=19%  Similarity=0.357  Sum_probs=27.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEe
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD   79 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD   79 (270)
                      |||+|||++|.+|..++..+.+.|+  +|++-+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~--~v~~~~   31 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGL--GVYIKK   31 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCC--EEEECC
Confidence            7999999999999999999999998  776533

>PLN02858 fructose-bisphosphate aldolase

Probab=96.17  E-value=0.035  Score=60.62  Aligned_cols=66  Identities=15%  Similarity=0.275  Sum_probs=49.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +||++||. |.+|..++..|+..|+  +|+.+|++...  ...+.....       ....++++++++||+||++...
T Consensus       325 ~~IGfIGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~Ga-------~~~~s~~e~~~~aDvVi~~V~~  390 (1378)
T PLN02858        325 KRIGFIGL-GAMGFGMASHLLKSNF--SVCGYDVYKPT--LVRFENAGG-------LAGNSPAEVAKDVDVLVIMVAN  390 (1378)
T ss_pred             CeEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHcCC-------eecCCHHHHHhcCCEEEEecCC
Confidence            58999997 9999999999999999  99999987532  222332211       1134677889999999998753

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.16  E-value=0.019  Score=52.05  Aligned_cols=57  Identities=23%  Similarity=0.437  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      -...+|+|+|.+..||..++.+|..++.  .|+.++..                       |.++++.++.||+||.++|
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~~~~A--tVt~chs~-----------------------T~~l~~~~~~ADIvIsAvG  210 (278)
T PRK14172        156 IEGKEVVVIGRSNIVGKPVAQLLLNENA--TVTICHSK-----------------------TKNLKEVCKKADILVVAIG  210 (278)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEeCCC-----------------------CCCHHHHHhhCCEEEEcCC
Confidence            3457999999999999999999998886  78777531                       3467778899999999998


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       211 kp  212 (278)
T PRK14172        211 RP  212 (278)
T ss_pred             Cc
Confidence            76

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.16  E-value=0.017  Score=50.64  Aligned_cols=37  Identities=32%  Similarity=0.420  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+..||+|+|+ |-+|+.++..|+..|. ++++++|.+.
T Consensus        19 L~~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          19 LKNARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             HhCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            44568999998 9999999999999997 6999999874

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.13  E-value=0.33  Score=42.80  Aligned_cols=157  Identities=13%  Similarity=0.092  Sum_probs=80.0

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCccee----eeeccCCH-------HHHh
Q 024248           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVR----GFLGQQQL-------EDAL  112 (270)
Q Consensus        47 mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~~~----~i~~t~d~-------~~al  112 (270)
                      +.++|+||+  +-+|..++..|++.|.  +|++.+++.. .....++.+......+.    .+....+.       .+.+
T Consensus         8 k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          8 KTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            468999985  6899999999999998  8999887531 11111221110000110    01111111       1223


Q ss_pred             CCCCEEEEcCCCCCC---C----CCchh---hhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 TGMDIVIIPAGVPRK---P----GMTRD---DLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~---~----g~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      ...|++|.++|....   .    ..+..   ..+..|+.....+++.+...- +.+.|+++|.-...    .        
T Consensus        86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~----~--------  153 (257)
T PRK08594         86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE----R--------  153 (257)
T ss_pred             CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc----c--------
Confidence            457999999986421   0    11111   123445444333333333221 34677777643321    0        


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.|..-.++.++..-..|-+.+|.++.  +..|++..+
T Consensus       154 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrvn~v  189 (257)
T PRK08594        154 VVQNYNVMGVAKASLEASVKYLANDLG--KDGIRVNAI  189 (257)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCEEeee
Confidence            122223456665555567777888774  334544333

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.12  E-value=0.019  Score=52.16  Aligned_cols=57  Identities=23%  Similarity=0.408  Sum_probs=47.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+..+|+|+|.|..||..++.+|..++.  .|++++.                       .|.++++.++.||+||.++|
T Consensus       156 l~Gk~vvViGrS~iVG~Pla~lL~~~~a--tVt~chs-----------------------~t~~l~~~~~~ADIvI~AvG  210 (284)
T PRK14190        156 ISGKHVVVVGRSNIVGKPVGQLLLNENA--TVTYCHS-----------------------KTKNLAELTKQADILIVAVG  210 (284)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEeC-----------------------CchhHHHHHHhCCEEEEecC
Confidence            3457999999999999999999998886  8877743                       13467788999999999998


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       211 ~p  212 (284)
T PRK14190        211 KP  212 (284)
T ss_pred             CC
Confidence            66

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.11  E-value=0.0089  Score=55.69  Aligned_cols=70  Identities=21%  Similarity=0.441  Sum_probs=43.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      ||+|+||+|++|..++..|..+++ ..+++++......++...+..    ..+. +. ..+. ++++++|+||+++|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~-~~-~~~~-~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELE-VN-EAKI-ESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEE-EE-eCCh-HHhcCCCEEEECCCH
Confidence            689999999999999999988655 125666655443332222211    1111 11 1133 457899999998763

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.11  E-value=0.02  Score=51.96  Aligned_cols=57  Identities=26%  Similarity=0.414  Sum_probs=47.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|.+..||..++.+|..++.  .|+.++.                       .|.|+++.++.||+||.++|
T Consensus       157 l~Gk~vvViGrS~iVGkPla~lL~~~~a--tVt~chs-----------------------~T~~l~~~~~~ADIvIsAvG  211 (284)
T PRK14177        157 VTGKNAVVVGRSPILGKPMAMLLTEMNA--TVTLCHS-----------------------KTQNLPSIVRQADIIVGAVG  211 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEeCC
Confidence            3456999999999999999999998886  7877753                       14567788999999999998


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       212 k~  213 (284)
T PRK14177        212 KP  213 (284)
T ss_pred             Cc
Confidence            66

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.09  E-value=0.029  Score=51.99  Aligned_cols=73  Identities=16%  Similarity=0.287  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .++|+|+|+ |..|...+..+.. .+ +.+|.+++++.++.+  ..++.+. .  .+. +...+|+++++++||+||.+.
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~-~~~V~v~~R~~~~a~~l~~~~~~~-~--g~~-v~~~~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRP-IREVRVWARDAAKAEAYAADLRAE-L--GIP-VTVARDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHhhc-c--Cce-EEEeCCHHHHHccCCEEEEee
Confidence            468999997 9999987777764 44 469999999864322  2223221 0  111 223467889999999998876


Q ss_pred             CC
Q 024248          123 GV  124 (270)
Q Consensus       123 g~  124 (270)
                      ..
T Consensus       206 ~s  207 (330)
T PRK08291        206 PS  207 (330)
T ss_pred             CC
Confidence            43

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.09  E-value=0.021  Score=52.17  Aligned_cols=57  Identities=23%  Similarity=0.410  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      -...+|+|+|.+..||..++.+|..++.  .|++++..                       |.|+++.++.||+||.++|
T Consensus       158 l~Gk~vvViGrS~iVGkPla~lL~~~~a--TVt~chs~-----------------------T~~l~~~~~~ADIvVsAvG  212 (294)
T PRK14187        158 LSGSDAVVIGRSNIVGKPMACLLLGENC--TVTTVHSA-----------------------TRDLADYCSKADILVAAVG  212 (294)
T ss_pred             CCCCEEEEECCCccchHHHHHHHhhCCC--EEEEeCCC-----------------------CCCHHHHHhhCCEEEEccC
Confidence            3456999999999999999999998886  78776532                       3467778899999999998


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       213 kp  214 (294)
T PRK14187        213 IP  214 (294)
T ss_pred             Cc
Confidence            76

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.09  E-value=0.022  Score=51.75  Aligned_cols=57  Identities=25%  Similarity=0.412  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      -+..+|+|+|.+..||..++.+|..++.  .|+.+...                       |.|+.+-++.||+||.++|
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~~~~A--TVt~chs~-----------------------T~dl~~~~k~ADIvIsAvG  210 (282)
T PRK14180        156 TEGAYAVVVGASNVVGKPVSQLLLNAKA--TVTTCHRF-----------------------TTDLKSHTTKADILIVAVG  210 (282)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCC--EEEEEcCC-----------------------CCCHHHHhhhcCEEEEccC
Confidence            3467999999999999999999998886  77776431                       3467777899999999998


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       211 kp  212 (282)
T PRK14180        211 KP  212 (282)
T ss_pred             Cc
Confidence            76

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.07  E-value=0.022  Score=51.70  Aligned_cols=57  Identities=26%  Similarity=0.475  Sum_probs=46.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+..+|+|+|.|..||..++.+|..++.  .|+....                       .|.|+++.++.||+||.++|
T Consensus       154 l~Gk~vvViGrS~iVGkPla~lL~~~~a--tVtichs-----------------------~T~~l~~~~~~ADIvI~AvG  208 (282)
T PRK14169        154 VAGKRVVIVGRSNIVGRPLAGLMVNHDA--TVTIAHS-----------------------KTRNLKQLTKEADILVVAVG  208 (282)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEECC-----------------------CCCCHHHHHhhCCEEEEccC
Confidence            3457999999999999999999998876  7776532                       24567788999999999998


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus       209 ~p  210 (282)
T PRK14169        209 VP  210 (282)
T ss_pred             Cc
Confidence            76

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-131
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-117
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		9e-77
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		4e-76
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		7e-68
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		1e-67
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		1e-66
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		3e-65
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		1e-21
1guz_A	310	Structural Basis For Thermophilic Protein Stability		4e-20
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		5e-20
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		5e-20
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		7e-20
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		9e-19
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		3e-18
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		3e-18
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		4e-18
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		4e-17
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		6e-17
1guy_A	309	Structural Basis For Thermophilic Protein Stability		8e-17
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		8e-17
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		1e-16
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		3e-16
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		1e-15
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		2e-15
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		3e-15
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		4e-15
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		1e-14
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		2e-14
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		1e-13
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		1e-13
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		1e-13
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		1e-13
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		1e-13
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		2e-13
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		7e-13
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		8e-13
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		9e-13
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		2e-12
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		2e-11
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		6e-10
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		2e-09
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		2e-09
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		2e-09
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		3e-09
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		4e-09
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		7e-09
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		2e-08
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		2e-08
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		2e-08
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		2e-08
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		2e-08
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		3e-08
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		4e-08
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		4e-08
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		4e-08
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		5e-08
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		5e-08
1ldb_A	317	Structure Determination And Refinement Of Bacillus		7e-08
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		7e-08
1bmd_A	327	Determinants Of Protein Thermostability Observed In		8e-08
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		8e-08
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		9e-08
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		1e-07
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		2e-07
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		3e-07
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		3e-07
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		3e-07
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		4e-07
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		8e-07
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		1e-06
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		1e-06
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		4e-06
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		4e-06
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		7e-06
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		7e-06
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		1e-05
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		1e-05
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		1e-05
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		4e-05
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		4e-05
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		6e-05
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		6e-05
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		4e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  463 bits (1191), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 240/266 (90%), Gaps = 1/266 (0%)
Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240
Query: 243 TEIDYLTDRIQNGGTEVVEVIRGNWS 268
            EI YLTDRIQNGGTEVVE   G  S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGS 266

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/230 (89%), Positives = 214/230 (93%)
Query: 39  RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
           RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVE   G  S
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGS 230

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  283 bits (723), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 137/221 (61%), Positives = 171/221 (77%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           +PL+SQ  P       ++  LT RIQ  GTEVV+   G  S
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGS 250

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  280 bits (717), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/221 (61%), Positives = 168/221 (76%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           +PL+SQ  P       ++  LT RIQ  GTEVV+   G  S
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGS 222

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  253 bits (647), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 135/224 (60%), Positives = 161/224 (71%), Gaps = 4/224 (1%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61  EDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           VTILPLLSQV P  S T  E+  LT RIQN GTEVVE   G  S
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGS 222

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/224 (60%), Positives = 161/224 (71%), Gaps = 4/224 (1%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61  EDA-TPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           VTILPLLSQV P  S T  E+  LT RIQN GTEVVE   G  S
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGS 222

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  249 bits (636), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/224 (59%), Positives = 160/224 (71%), Gaps = 4/224 (1%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61  EDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVN+TV IAAEV KK G YD  +L GVT LD++ +NTFVAE+ G  P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           VTILPLLSQV P  S T  E+  LT RIQN GTEVVE   G  S
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGS 222

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  244 bits (623), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/227 (59%), Positives = 162/227 (71%), Gaps = 4/227 (1%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRG 101
           S   KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T+  ++G
Sbjct: 1   SNAXKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKG 60
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
           + G+     AL G D+V+I AGV RKPG  R DLFN+NAGIVK+L E IA  CP A + +
Sbjct: 61  YAGEDPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGI 119
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           I+NPVN+TVPIAAEV KK G YD ++L GVT LDV+R+ TFVAE+ G DP EV VPV+GG
Sbjct: 120 ITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGG 179
Query: 222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           H+GVTILPLLSQV+     +  EI  LT RIQN GTEVVE   G  S
Sbjct: 180 HSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGS 225

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K++++GA G IG  +A+L+    L  V +++D++     G   D++H M          G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +   E  L   D+VII AGVPRKP MTR DL  +NA IV ++ E + K CP A V  I+N
Sbjct: 74  ENNYE-YLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P+++ V      FK+       ++ G++ +LD  R    ++  LG+ P +V   VVGGH 
Sbjct: 133 PLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH- 187
Query: 224 GVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
           G  ++PL S V               +T ++I+ +  +   GG E+VE+++
Sbjct: 188 GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLK 238

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 119/233 (51%), Gaps = 28/233 (12%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH------MDTNAV 98
            K+ V+GA G +G   A  +    L   L L DVV     G   D+         DT   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
                G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I
Sbjct: 60  -----GSNDYADTANS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
           + ++SNP++    +A   + + G   PK R++G+  +LD  R  +F+A  LG+  ++++ 
Sbjct: 114 IIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEVIR 264
            V+GGH G  ++P++        P   L P E ID L +R +NGG E+VE ++
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLK 220

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 117/234 (50%), Gaps = 28/234 (11%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------NAVVRG 101
           K+ ++GA G IG  LA L  I  L  V+ L+D+         +  + T      +  VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + LE++    D+VI+ AGVPRKPG +RDDL  IN  + +T+ EGI   CP A V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    I     +K       +++G   +LD  R  TF+A+ L +  ++V   V G
Sbjct: 121 ITNPLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXG 176
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
           GH G T +PL          L Q+     L    +D +  R ++GG E+V +++
Sbjct: 177 GH-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLK 229

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 22/233 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDTNAVVRGF--- 102
           KV+V+GA G  G   A L+    L  V+ L D+  +  P     +  ++ + V +GF   
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPV-QGFDAN 66
Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
            +G     D     D+V+I AG+ RKPGM+RDDL   N+ I+K++   IAK  P AI+ +
Sbjct: 67  IIGTSDYADTADS-DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV++   +   VFK+ G +  +R++G + +LD  R  TF+A+ L L  +++   V+G
Sbjct: 126 LTNPVDA---MTYSVFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLG 181
Query: 221 GHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEVIRGNWS 268
           GH G  ++PL+        P  +L P E ++ + +R + GG E+V ++ GN S
Sbjct: 182 GH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGS 232

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 22/230 (9%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--- 103
            K+ V+GA G +G   A  +    L   L L DVV        +   +T  V  G     
Sbjct: 1   MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPV--GLFDTK 57
Query: 104 --GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ +
Sbjct: 58  ITGSNDYADTADS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVV 219
           +SNP++    +A      V +  PK R++G+  +LD  R  +F+A  LG+  ++++  V+
Sbjct: 117 VSNPLDIMTHVAW-----VRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 220 GGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEVIR 264
           GGH G  ++P++        P   L P E ID L +R +NGG E+VE ++
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLK 220

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 20/230 (8%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMD-TNAVVRGFLG 104
           K+A++G+ G IG  LA L  +  L  V+ L+D+   TP G   DI+     +     F G
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                 A+ G D+VI+ AGVPRKPGM+RDDL  IN  +++ +  GI K  P+A V  I+N
Sbjct: 67  ANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
           P+++ V  A + F  +  +    + GV  LD  R   F++E   +   +V V V+GGH  
Sbjct: 126 PLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD 182
Query: 223 --------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
                   + V  +PL   VK   + +  ++D +  R ++GG E+V +++
Sbjct: 183 SMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIVGLLK 231

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 67  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 124 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 178
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 179 QATVIGTH-GDCMVPLVRYI 197

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMXE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 89/155 (57%), Gaps = 11/155 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+  ++V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
            +S +  S  + P  +  + +R + GG E+V +++
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK 221

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 89/155 (57%), Gaps = 11/155 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+  ++V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
            +S +  S  + P  +  + +R + GG E+V +++
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK 221

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 88/155 (56%), Gaps = 11/155 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+   +V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
            +S +  S  + P  +  + +R + GG E+V +++
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK 221

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 116/233 (49%), Gaps = 28/233 (12%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH------MDTNAV 98
            K+ V+GA G +G   A  +    L   L L DVV     G   D+         DT   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
                G     D     DIV+I AG+PRKPGMTR+DL ++NAGIV+ +   I +     I
Sbjct: 60  -----GSNDYADTANS-DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
           + ++SNP++    +A   ++K G   PK R++G+  +LD  R  +F+A  LG+  ++V  
Sbjct: 114 IVVVSNPLDIMTHVA---WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEVIR 264
            V+GGH G  ++P++        P   L   E I  L +R + GG E+V  ++
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVNHLK 220

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 88/155 (56%), Gaps = 11/155 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+   +V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
            +S +  S  + P  +  + +R + GG E+V +++
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK 221

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL 230
           +    F K    DP+++ G  T+LD  R  T +A+  G  PR V V V+G H G + +P+
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-GDSEVPV 179
Query: 231 LS 232
            S
Sbjct: 180 WS 181

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                D ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  I+N
Sbjct: 64  TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+GGH 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
           G  ++P  S V
Sbjct: 178 GDGMVPATSSV 188

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                D ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  I+N
Sbjct: 64  TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+GGH 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
           G  ++P  S V
Sbjct: 178 GDGMVPATSSV 188

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 25/234 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ 105
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
               + + G D+VII AG+ + PG      +R+DL   NA I++ + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           +++NP++  V    + F +        + G+  +LD  R   F+A+ L + PR++   V+
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 220 GGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVI 263
           G H G  +LPL          L +      +T  ++  + +R +  G E+V ++
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRLL 236

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 25/234 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ 105
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
               + + G D+VII AG+ + PG      +R+DL   NA I++ + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           +++NP++  V    + F +        + G+  +LD  R   F+A+ L + PR++   V+
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 220 GGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVI 263
           G H G  +LPL          L +      +T  ++  + +R +  G E+V ++
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRLL 236

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 14/228 (6%)
Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTN-AVVRGFLGQQ 106
           + +LGA G +G   A+++ +     +L +      P G   D++H      V     G  
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             ED + G DIV++ AG+ RKPGMTR+ L   NA  +  L E I      AIV + +NPV
Sbjct: 61  SYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPV 119
Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           ++   +   ++KK G +  +R++G + +LD  R   ++++ LG+  + V+  V+G H   
Sbjct: 120 DAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQK 175
Query: 226 TI-LPLLSQVKP---SCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWSD 269
              +P LS V        ++  EI+ +     N G ++ E +RG  S+
Sbjct: 176 MFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITE-LRGYSSN 222

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADI------SHMDTNA 97
           KV ++GA+G +G   A+L+   P +  L L    + +    G+  DI      +  D N 
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
            V      + ++++    D+VII +GVPRK GM+R DL   NA IV    + IA+ C   
Sbjct: 62  YVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK 117
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
           I  +I+NPV+  +   A V  K   ++  ++ G+ T LD +R    +A+  G+   EV  
Sbjct: 118 IF-VITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT 172
Query: 217 PVVGGHAGVTILPLLS 232
            ++G H G +++PLLS
Sbjct: 173 RIIGEH-GDSMVPLLS 187

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 25/237 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEV 262
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V +
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 25/237 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP 
Sbjct: 59  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEV 262
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V +
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 25/237 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP 
Sbjct: 59  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEV 262
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V +
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 25/237 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEV 262
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V +
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 25/237 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEV 262
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V +
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 25/238 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ ++DVV N P G   D SH +  A    
Sbjct: 1   TPKPKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I   CP 
Sbjct: 59  KVTGSNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREV 214
           A + +++NPV+  V +   +F+  G   PK +++G+  +LD  R   ++++ L + PR+V
Sbjct: 119 AFIIVVTNPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 173
Query: 215 DVPVVGGHAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVI 263
           +  +VG H    +L           L +   +  +T  E++ + DR  N   E+V ++
Sbjct: 174 NALIVGAHGNKMVLLKRYITVGGIPLQEFINNKKITDEEVEGIFDRTVNTALEIVNLL 231

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 35/235 (14%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG--FL 103
           KVA++GA G +G   A  M +    + L L DV      G   DI+H        G  F+
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH--------GLPFM 59
Query: 104 GQQQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
           GQ  L       +   D++++ AG  RKPG TR DL   N  I K + + I K     ++
Sbjct: 60  GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            ++SNPV+    I   + +K       +++G  T+LD +R    ++E LG+D + V   +
Sbjct: 120 LVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYI 175
Query: 219 VGGHAGVTILPLLSQVK------------PSCSLTPTEIDYLTDRIQNGGTEVVE 261
           +G H G + LPL S               P C+ T  +   + + ++  G  +++
Sbjct: 176 IGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK 229

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 23/236 (9%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ ++D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L   D+VI+ AG  + PG +     RDDL  +N  I+  +   I   CP 
Sbjct: 60  KVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEV 262
             +VG H    +L           L +   +  +T  E+D + DR  N   E+V +
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKKITDQELDAIFDRTINTALEIVNL 231

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 11/154 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+ II AG+PR PGM+RDDL   N  IV  + E   +  P + + +++NP++    +A E
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
                  +   R++G+  +LD  R  +F+AE L +  R+V   ++GGH G T++PL    
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 235 KPSCSLTPTEID-----YLTDRIQNGGTEVVEVI 263
                  P  ID      + +R +  G E+V+++
Sbjct: 186 TVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM 219

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 113/237 (47%), Gaps = 25/237 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG +     R DL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEV 262
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V +
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 99/235 (42%), Gaps = 22/235 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTNAVVRGFLGQ 105
           K+ ++GAAG IG  +A    +  L   L LYD   V   GV  +I H     +   F   
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF--T 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
             +++ALT    ++   G PRK GMTR+DL   NA I   L + I   CP    V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH- 222
           P +    I   V        P ++  +  LD  R  + +A+  G+    V +    GGH 
Sbjct: 128 PAD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHG 183
Query: 223 ---------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
                    A V   PL   +     LT  +   L  R+  GG  +++ +RG  S
Sbjct: 184 EQMAVFASTAKVNGTPLTDLIGTD-KLTNEQWAELKQRVVKGGANIIK-LRGRSS 236

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P+KPG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K+  +   R++G  T LD  R    +AE++ +D R V   ++G H G T  P+ S 
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSH 191

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P++PG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K+  +   R++G  T LD  R    +AE++ +D R V   ++G H G T  P+ S 
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSH 190

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P+KPG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K+  +   R++G  T LD  R    +A+++ +D R V   ++G H G T  P+ S 
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSH 191

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 109/265 (41%), Gaps = 46/265 (17%)
Query: 26  IEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 85
           +E ++ G G M           KVAV GAAG IG  L  L+    L+           P 
Sbjct: 12  LEAQTQGPGSMSA--------VKVAVTGAAGQIGYALVPLIARGALLG----------PT 53
Query: 86  VTADISHMDTNAVVRGFLG-QQQLED-----------------ALTGMDIVIIPAGVPRK 127
              ++  +D    ++   G + +LED                 A  G+ I I+    PRK
Sbjct: 54  TPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRK 113
Query: 128 PGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
            GM R DL  +NA I K   E IA        V ++ NP N+   I  +  +  G  +P+
Sbjct: 114 AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQ--GKLNPR 171
Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 245
            +  +T LD  RA + +A   G+   +V +V + G H+   +    S V      TP   
Sbjct: 172 HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAV---IGTTPARE 228
Query: 246 DYLTDRIQNGGTEVVEVIRGNWSDL 270
               D + +   + V+V+RG  +++
Sbjct: 229 AIKDDALDD---DFVQVVRGRGAEI 250

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 16/162 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEVVE 261
                   PLL   +    +L+P +   + + ++     ++E
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIE 222

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L
Sbjct: 121 VXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVL 178

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 16/162 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVE 261
                   PLL   +    +L+P +   + + ++     ++E
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE 222

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V   +    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVE 261
                   PLL   +    +L+P +   + + ++     ++E
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE 222

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 46  GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVR 100
           G KV ++G  G +G   A  +    +V  L + D+ +T  V  D+  +      +   VR
Sbjct: 6   GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVR 63
Query: 101 GFLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
              G+     DA    D+V+I AG  +KPG TR DL + N  I K++   +       I 
Sbjct: 64  VKAGEYSDCHDA----DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIF 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            + +NPV+    I A    K      +R++G  T+LD  R    ++E   + PR VD  +
Sbjct: 120 LVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQI 175
Query: 219 VGGHAGVTILPLLSQ 233
           +G H G T LP+ S 
Sbjct: 176 IGEH-GDTELPVWSH 189

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRG 101
           P  +  VL   G +G   A  M    +     + DVV   T G   D+       A  + 
Sbjct: 3   PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI 62
Query: 102 FLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
           + G+    +DA    D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  
Sbjct: 63  YSGEYSDCKDA----DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           + +NPV+    I      K   +  +R++G  T LD  R    + +   +DPR VD  ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174
Query: 220 GGH 222
           G H
Sbjct: 175 GEH 177

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A   V   +
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              +  +DA    DIV I AG  +KPG TR +L   N  I K +   +       I  + 
Sbjct: 66  GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G 
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
           H G T LP+ S            V+ + +    E+D + D ++N    ++E
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE 227

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 46  GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVR 100
           G KV ++G  G +G   A  +    +V  L + D+ +T  V  D+  +      +   VR
Sbjct: 6   GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVR 63
Query: 101 GFLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
              G+     DA    D+V+I AG  +KPG TR DL + N  I K++   +       I 
Sbjct: 64  VKAGEYSDCHDA----DLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIF 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            + +NPV+    I A    K      +R++G  T+LD  R    ++E   + PR VD  +
Sbjct: 120 LVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQI 175
Query: 219 VGGHAGVTILPLLSQ 233
           +G H G T LP+ S 
Sbjct: 176 IGEH-GDTELPVWSH 189

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +++NP++    
Sbjct: 67  LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTY 126
Query: 172 IAA--------EVFKKVGTYDPKRL 188
           I          EVF      D +RL
Sbjct: 127 IMWKESGKPRNEVFGMGNQLDSQRL 151

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+   +    +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVE 261
              +V+E
Sbjct: 210 SAMDVIE 216

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+   +    +  E + L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVE 261
              +V+E
Sbjct: 211 SAMDVIE 217

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           K+AV+GA G +G  LA       +   + L D+     V A++  M   +     +    
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKER-VEAEVLDMQHGSSFYPTVSIDG 66
Query: 108 LED--ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
            +D       D+V+I AG  +KPG +R +L      I+K +   + K  P AI  LI+NP
Sbjct: 67  SDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 126
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    IA  V +K+      ++ G  T LD  R    +A+  G++ + V   + G H G
Sbjct: 127 VD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-G 181
Query: 225 VTILPLLSQVK----PSCSLTP 242
            + +PL         P    TP
Sbjct: 182 DSEVPLWESATIGGVPMSDWTP 203

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+   +    +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVE 261
              +V+E
Sbjct: 210 SAMDVIE 216

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A   V   +
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              +  +DA    DIV I AG  +KPG TR +L   N  I K +   +       I  + 
Sbjct: 66  GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G 
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
           H G T LP+ S            V+ + +    E+D + D ++N    ++E
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE 227

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NPV+    I   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K      +R++G  T+LD  R    + E   + P+ V   ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NPV+    I   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
              K      +R++G  T+LD  R    + E   + P+ V   ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
           +VAV GAAG IG  L        ML K  P+  +L L ++         +     +    
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
              G +  +D   A    D  ++    PRK GM R DL  +N  I       +A+   K 
Sbjct: 64  LLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
           + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +  
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
             V G+   T+ P L       +P+  L   E
Sbjct: 181 MTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
           +VAV GAAG IG  L        ML K  P+  +L L ++         +     +    
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
              G +  +D   A    D  ++    PRK GM R DL  +N  I       +A+   K 
Sbjct: 64  LLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
           + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +  
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
             V G+   T+ P L       +P+  L   E
Sbjct: 181 MTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 17/187 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V    +    +  E + L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVE 261
              +V+E
Sbjct: 211 SAMDVIE 217

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 17/187 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V    +    +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVE 261
              +V+E
Sbjct: 210 SAMDVIE 216

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 18/211 (8%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA--V 98
           +VAV GAAG IG  L        ML K  P++  L L    +   +   +  ++  A  +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           + G       + A    D  ++    PRK GM R DL  +N  I       +A+   K +
Sbjct: 65  LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 159 -VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
            V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +   
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 218 VVGGHAGVTILPLLSQV----KPSCSLTPTE 244
            V G+   T+ P L       +P+  L   E
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
           G  +L DA     +VI+ AG  +KPG +R DL   NA I + L   I +  P A++ + S
Sbjct: 61  GHSELADA----QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116
Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 222
           NPV+    +A ++         + ++G  T+LD  R    +A+  G+D       V+G H
Sbjct: 117 NPVDLLTDLATQLAPG------QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH 170
Query: 223 AGVTILPLLS 232
               +L   S
Sbjct: 171 GDSEVLAWSS 180

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
           +P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  
Sbjct: 17  TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           +V G     +  +      +VII AG  ++ G +R +L   N  I K +   + K  P  
Sbjct: 76  IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
            + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P     
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV 259
            V+G H G + +P+ S +  +  SL     D  TD+ +    EV
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
           +P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  
Sbjct: 17  TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           +V G     +  +      +VII AG  ++ G +R +L   N  I K +   + K  P  
Sbjct: 76  IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
            + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P     
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV 259
            V+G H G + +P+ S +  +  SL     D  TD+ +    EV
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEV 229

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 20/212 (9%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
           +VAV GAAG IG  L        ML K  P+  +L L ++         +     +    
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
              G +  +D   A    D  ++    PRK GM R DL  +N  I       +A+   K 
Sbjct: 64  LLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
           + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +  
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
             V G+    + P L       +P+  L   E
Sbjct: 181 MTVWGNHSSIMFPDLFHAEVDGRPALELVDME 212

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +V++ AG  ++ G +R +L   N  I K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 90  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
             K+  +   R++G  T LD  R    + E L L P      +VG H G + +P+ S V
Sbjct: 146 AWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGV 203

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
Query: 53  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
           G+  G  QP+ + L+ I P++ VL         GV  ++       +++  +   + E A
Sbjct: 27  GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 77
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
              +D+ I+   +PR+ GM R DL   N  I K  C+G A  K   K++ V ++ NP N+
Sbjct: 78  FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 135
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
               A+   K   +   +    +T LD  RA   +A  LG+   +V   ++ G+   T  
Sbjct: 136 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 192
Query: 229 PLLSQVK 235
           P ++  K
Sbjct: 193 PDVNHAK 199

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
Query: 53  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
           G+  G  QP+ + L+ I P++ VL         GV  ++       +++  +   + E A
Sbjct: 26  GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 76
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
              +D+ I+   +PR+ GM R DL   N  I K  C+G A  K   K++ V ++ NP N+
Sbjct: 77  FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 134
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
               A+   K   +   +    +T LD  RA   +A  LG+   +V   ++ G+   T  
Sbjct: 135 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 191
Query: 229 PLLSQVK 235
           P ++  K
Sbjct: 192 PDVNHAK 198

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 18/197 (9%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 19  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 77
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V       +         +VII AG  ++ G +R +L   N  I K +   + K  P+  
Sbjct: 78  V-----SSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 133 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQV 234
           V+G H G + +P+ S V
Sbjct: 189 VLGEH-GDSSVPVWSGV 204

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 18/197 (9%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 18  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 76
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V       +         +VII AG  ++ G +R +L   N  I K +   + K  P+  
Sbjct: 77  V-----SSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 132 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 187
Query: 218 VVGGHAGVTILPLLSQV 234
           V+G H G + +P+ S V
Sbjct: 188 VLGEH-GDSSVPVWSGV 203

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +VII AG     G TR DL   N  I+K +  G+ +  P   + +++NPV+    I   V
Sbjct: 90  LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
             K+  +   R++G    LD  R    + E LG++P      V+G H G + +P+ S V
Sbjct: 146 VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGV 203

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 18/197 (9%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +
Sbjct: 19  PHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKI 77
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V G     +  +      +V+I AG  ++ G +R +L   N  I K +   I K  P   
Sbjct: 78  VSG-----KDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 133 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQV 234
           ++G H G + +P+ S V
Sbjct: 189 ILGEH-GDSSVPVWSGV 204

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 9/186 (4%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF 102
           P  K+ V+G  G +G   A+ +    L   L L DV+     G   D+ H          
Sbjct: 19  PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKI 77
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           +  +          IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++
Sbjct: 78  VADKDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVV 136
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           SNPV+    I   V  K+      R++G    LD  R    +AE LG+ P      ++G 
Sbjct: 137 SNPVD----ILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 222 HAGVTI 227
           H   ++
Sbjct: 193 HGDSSV 198

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 9/186 (4%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF 102
           P  K+ V+G  G +G   A+ +    L   L L DV+     G   D+ H          
Sbjct: 19  PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKI 77
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           +  +          IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++
Sbjct: 78  VADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVV 136
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           SNPV+    I   V  K+      R++G    LD  R    +AE LG+ P      ++G 
Sbjct: 137 SNPVD----ILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 222 HAGVTI 227
           H   ++
Sbjct: 193 HGDSSV 198

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +V++ AG  ++ G +R +L   N  I K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
             K+      R++G  T LD  R    + E LG+ P      V+G H G + +P+ S V
Sbjct: 147 AWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEH-GDSSVPVWSGV 204

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 92  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD----ILTYV 147
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    + E LG+ P      ++G H   ++
Sbjct: 148 AWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSV 199

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 18  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKI 76
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V G     +         +VII AG  ++ G +R +L   N  I K +   + K  P   
Sbjct: 77  VSG-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+        
Sbjct: 132 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGW 187
Query: 218 VVGGHAGVTILPLLS 232
           ++G H G + +P+ S
Sbjct: 188 ILGEH-GDSSVPVWS 201

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
           K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 23  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 81
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +      G  +V+I AG  ++ G +R +L   N  I K +   I K  P  I+ +
Sbjct: 82  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 136
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    +A     K+      R++G    LD  R    + E LG+        V+G
Sbjct: 137 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 192
Query: 221 GH 222
            H
Sbjct: 193 EH 194

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
           K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 80
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +      G  +V+I AG  ++ G +R +L   N  I K +   I K  P  I+ +
Sbjct: 81  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 135
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    +A     K+      R++G    LD  R    + E LG+        V+G
Sbjct: 136 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 191
Query: 221 GH 222
            H
Sbjct: 192 EH 193

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 22/141 (15%)
Query: 125 PRKPGMTRDDLFNINAGIVKTLCEGI-AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY 183
           PR PGM R DL +IN  I     + + A   P   V ++ NP N+   I     K     
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPT 243
            PK    +T LD  RA   +A   G+   +V    + G+   T +P              
Sbjct: 186 PPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVP-------------- 231
Query: 244 EIDYLTDRIQNGGTEVVEVIR 264
             D+L  +I   G  V EVIR
Sbjct: 232 --DFLNAKIH--GIPVTEVIR 248

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-131
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-127
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-120
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	2e-39
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	1e-38
3tl2_A	315	Malate dehydrogenase; center for structural genomi	4e-38
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	8e-38
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-37
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	2e-37
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-37
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	3e-37
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	3e-37
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	4e-37
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	2e-36
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	3e-35
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	3e-35
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	4e-34
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	3e-32
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	3e-32
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	3e-32
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	4e-32
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	9e-32
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	2e-31
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	4e-31
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	1e-30
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	1e-30
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	2e-30
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	2e-30
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-30
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	2e-30
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	3e-30
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	1e-29
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	2e-29
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	1e-27
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	6e-27
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	8e-26
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	4e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	9e-08
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	1e-06
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  374 bits (963), Expect = e-131
 Identities = 204/223 (91%), Positives = 212/223 (95%)

Query: 39  RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
           RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVE
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVE 223

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  363 bits (935), Expect = e-127
 Identities = 137/221 (61%), Positives = 168/221 (76%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           +PL+SQ  P       ++  LT RIQ  GTEVV+   G  S
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGS 222

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  345 bits (887), Expect = e-120
 Identities = 135/223 (60%), Positives = 161/223 (72%), Gaps = 4/223 (1%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS 268
           TILPLLSQV P  S T  E+  LT RIQN GTEVVE   G  S
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGS 222

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  139 bits (352), Expect = 2e-39
 Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 21/228 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGFLGQ 105
           K+ ++GAAG IG  +A    +  L   L LYD       GV  +I H     +       
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGL--NLTFT 67

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
             +++ALT    ++   G PRK GMTR+DL   NA I   L + I   CP    V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223
           P + T  +            P ++  +  LD  R  + +A+  G+    V      GGH 
Sbjct: 128 PADITGLVTL----IYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 224 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
           G  +             L+ +  +  LT  +   L  R+  GG  +++
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIK 230

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  136 bits (345), Expect = 1e-38
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 28/232 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHM------DTNA 97
           KV ++GA+G +G   A+L+   P +  L L    +      G+  DI         D N 
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
            V      + ++++    D+VII +GVPRK GM+R DL   NA IV    + IA+ C   
Sbjct: 62  YVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK 117

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
           I  +I+NPV+    +          ++  ++ G+ T LD +R    +A+  G+   EV  
Sbjct: 118 IF-VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT 172

Query: 217 PVVGGHAGVTILPLLSQVKPS-------CSLTPTEIDYLTDRIQNGGTEVVE 261
            ++G H G +++PLLS                   ID + + ++  G +++ 
Sbjct: 173 RIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR 223

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  135 bits (342), Expect = 4e-38
 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 25/228 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHM----DTNAVV 99
           KV+V+GA G  G   A L+    L  V+ L D+      T     D+         +A +
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPVQGFDANI 67

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
            G        D+    D+V+I AG+ RKPGM+RDDL   N+ I+K++   IAK  P AI+
Sbjct: 68  IGTSDYADTADS----DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAII 123

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            +++NPV+           K   +  +R++G   +LD  R  TF+A+ L L  +++   V
Sbjct: 124 VVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFV 179

Query: 219 VGGHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVE 261
           +GGH G  ++PL+        P  +L     ++ + +R + GG E+V 
Sbjct: 180 LGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG 226

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  134 bits (340), Expect = 8e-38
 Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 28/234 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+ ++GA G IG  LA L  I  L  V+ L+D+      G   D+         +  VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQTCPIEGVDFKVRG 64

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + LE++    D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CP A V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVIC 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    I   + +K       +++G+  +LD  R  TF+A+ L +  ++V   V+G
Sbjct: 121 ITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMG 176

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
           GH G T++PL          L Q+     L    +D +  R ++GG E+V +++
Sbjct: 177 GH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLK 229

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  133 bits (338), Expect = 1e-37
 Identities = 57/229 (24%), Positives = 108/229 (47%), Gaps = 23/229 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K++++GA G +G   A  +    L  ++ L D+V     G   D+         +  V G
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEGFDVRVTG 61

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                   ++    D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +
Sbjct: 62  TNNYADTANS----DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 117

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++        +  +V  +  +R++G   +LD  R  TF+A   G+   +V   ++G
Sbjct: 118 VNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMG 173

Query: 221 GHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEVIR 264
           GH G  ++PL         P      P  +  + +R + GG E+V +++
Sbjct: 174 GH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK 221

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  133 bits (337), Expect = 2e-37
 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 28/234 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H      + + V G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 +  +    D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  
Sbjct: 64  TDDYADISGS----DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+G
Sbjct: 120 ITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIG 175

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
           GH G  ++P           LS       +T  +ID +    +    EV + ++
Sbjct: 176 GH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNLK 228

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  133 bits (336), Expect = 2e-37
 Identities = 79/229 (34%), Positives = 115/229 (50%), Gaps = 22/229 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
           K+ V+GA G +G   A  +    L   L L DVV     G   D+        V  F   
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES---GPVGLFDTK 57

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ +
Sbjct: 58  VTGSNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNP++    I   V         +R++G+  +LD  R  +F+A  LG+  ++++  V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEVIR 264
           GH G  ++P++        P   L P E ID L +R +NGG E+VE ++
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLK 220

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  133 bits (336), Expect = 3e-37
 Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 28/234 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K++++GA G IG  +A+L+    L  V  ++D++     G   D++H      + A + G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + L+++    D+VII AGVPRKP MTR DL  +NA IV ++ E + K CP A V  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++         FK+       ++ G+  +LD  R    ++  LG+ P +V   VVG
Sbjct: 130 ITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG 185

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
           GH G  ++PL          LS       +T ++I+ +  +   GG E+VE+++
Sbjct: 186 GH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLK 238

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  132 bits (335), Expect = 3e-37
 Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 22/226 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KV V+GA G +G  +A  +    +   + + D+ +    G   D+         +  V G
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                  ED+    D+ II AG+PR PGM+RDDL   N  IV  + E   +  P + + +
Sbjct: 61  TNDYGPTEDS----DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++    +   V  +   +   R++G+  +LD  R  +F+AE L +  R+V   ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVE 261
           GH G T++PL         P   L     I+ + +R +  G E+V+
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVD 217

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  132 bits (334), Expect = 4e-37
 Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 21/225 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHM---DTNAVVR 100
           KV+V+GAAG +G      + +  +   +   D+ +    T    AD +H    D+N  V 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV- 60

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
               Q   ED   G D+V+I AG+PR+PG TR DL   NA I++ +   + +     I  
Sbjct: 61  ---RQGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
             SNPV+    +      + G    ++++G    LD  R    ++E      + V+  ++
Sbjct: 117 TTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL 172

Query: 220 GGHAGVTILPLLSQVKPSC---SLTPTEIDYLTDRIQNGGTEVVE 261
           G H G   +P+ S+V         +  E + L   +Q    +V+E
Sbjct: 173 GEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE 216

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  131 bits (331), Expect = 2e-36
 Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 28/234 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+A++G+ G IG  LA L  +  L  V+ L+D+      G   DI+        +A   G
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 +E A    D+VI+ AGVPRKPGM+RDDL  IN  +++ +  GI K  P+A V  
Sbjct: 67  ANDYAAIEGA----DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVIC 122

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++          +K       +++G+  +LD  R   F++E   +   +V V V+G
Sbjct: 123 ITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLG 178

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
           GH G +++PL          L  +      +  ++D +  R ++GG E+V +++
Sbjct: 179 GH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLLK 231

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  128 bits (323), Expect = 3e-35
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 32/239 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+     V      
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHV---TSVVDTNVS 65

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
             + +++NP++       +V  +        + G+  MLD  R   +VA+ L + PR+V 
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 216 VPVVGGHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEVIR 264
             V+G H G  ++PL+  +               +T  +++ + +  +  G E+V  + 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFLG 239

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  127 bits (321), Expect = 3e-35
 Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 23/225 (10%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRGF 102
           + +LGA G +G   A+++ +     +L L         G   D++H       +  + G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAHAAAELGVDIRISGS 59

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              + +  +    DIV++ AG+ RKPGMTR+ L   NA  +  L E I      AIV + 
Sbjct: 60  NSYEDMRGS----DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+        V  K   +  +R++G   +LD  R   ++++ LG+  + V+  V+G 
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171

Query: 222 HAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVE 261
           H G  + P+              ++  EI+ +     N G ++ E
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITE 215

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  124 bits (315), Expect = 4e-34
 Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 33/236 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+ ++G+ G IG  +A L+    L  V+ L+D+V     G   D SH      +N  V G
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
                 L  A    D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP 
Sbjct: 64  SNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119

Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175

Query: 216 VPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
             +VG H G  ++ L          L +   +  ++  E++ + DR  N   E+V 
Sbjct: 176 AHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVN 230

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  119 bits (302), Expect = 3e-32
 Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 29/231 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  M    +     + DVV   T G   D+           +  G
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  +
Sbjct: 66  -----EYSD-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I      K   +  +R++G  T LD  R    + +   +DPR VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVE 261
            H G +     S                 ++  ++  L D ++N   +++ 
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN 225

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  119 bits (301), Expect = 3e-32
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 28/231 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  +    +V  L + D+      G   D+ H      T   V+ 
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG  +KPG TR DL + N  I K++   +       I  +
Sbjct: 67  ----GEYSD-CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV 121

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I A    K      +R++G  T+LD  R    ++E   + PR VD  ++G
Sbjct: 122 ATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIG 177

Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVE 261
            H G T LP+ S                     +I+ +  + ++   ++++
Sbjct: 178 EH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ 227

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  119 bits (301), Expect = 3e-32
 Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 28/231 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  M +  +   + + D+    T G   D+S+         +   
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA 69

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG P+KPG TR DL N N  I+K++ + I       I  +
Sbjct: 70  -----EYSD-AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I      K+  +   R++G  T LD  R    +AE++ +D R V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
            H        +   I  + +   VK    +   ++  + + +++   E+++
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK 230

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  119 bits (300), Expect = 4e-32
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 19/227 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           +V V+GA G +G      +    +   + L D       G   D +H    A     +  
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              +D     D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NP
Sbjct: 67  GDYDD-CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP 125

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
           V+    I      K      +R++G  T+LD  R    + E   + P+ V   ++G H  
Sbjct: 126 VD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD 181

Query: 223 ------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
                 +   I  +P+   V+        +++ +   +++   +++E
Sbjct: 182 TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE 228

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  118 bits (298), Expect = 9e-32
 Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 19/227 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A        
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              ED     DIV I AG  +KPG TR +L   N  I K +   +       I  + +NP
Sbjct: 66  GTYED-CKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
           V+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G H  
Sbjct: 125 VD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGD 180

Query: 223 ------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
                 +   +  +P+   V+ + +    E+D + D ++N    ++E
Sbjct: 181 TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE 227

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  117 bits (296), Expect = 2e-31
 Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 28/231 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G   A  + +      + L DV      G   D+ H         F  +
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP------FTRR 54

Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             +       L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV+    +    F K    DP+++ G  T+LD  R  T +A+  G  PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
            H        +G  I  +PL +  +         ++   ++ +    E++E
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE 221

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  116 bits (293), Expect = 4e-31
 Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 31/234 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           K+AV+GA G +G  LA       +   + L D+          D+ H      T ++   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 67

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                  E      D+V+I AG  +KPG +R +L      I+K +   + K  P AI  L
Sbjct: 68  ----DDPEI-CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML 122

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NPV+    IA  V +K+      ++ G  T LD  R    +A+  G++ + V   + G
Sbjct: 123 ITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAG 178

Query: 221 GHAGVTILPLLSQV-------------KPSCSLTPTEIDYLTDRIQNGGTEVVE 261
            H G + +PL                      L   + + +   ++N   +++ 
Sbjct: 179 EH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN 231

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  114 bits (289), Expect = 1e-30
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 30/225 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           K+  +GA G +G   A    +N  V  + L D+      G   D++H    +D    + G
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L+ +    +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +
Sbjct: 61  GADYSLLKGS----EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++    +   +  K        + G+   LD  R    +      +       ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTEIDYLTDRIQNGGTEVVE 261
            H G ++    S      +        + + + + ++    EV++
Sbjct: 171 EH-GDSMFVAKSLADFDGEV-------DWEAVENDVRFVAAEVIK 207

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  114 bits (289), Expect = 1e-30
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 20/216 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQ 106
           K+ V+G  G +G    + +    +   L L D+   T G T D+   +   V       +
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVE----ISK 70

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
            L        +VI           +  D+   N  + + L   +      +++ + S P 
Sbjct: 71  DLSA-SAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
              V I   V  K+ T+   R++G+   LD  R    +  VL       +V V+G   G 
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
             +   S                  ++ N   E++ 
Sbjct: 184 DKVLTWSGQ------EEVVSHTSQVQLSNRAMELLR 213

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  115 bits (289), Expect = 2e-30
 Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 31/238 (13%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
           +V V GAAG I   L        +  K  P++  L L D+        GV  ++   D  
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60

Query: 97  AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              ++  +   + E A   +D+ I+   +PR+ GM R DL   N  I K     + K   
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K++ V ++ NP N+    A+   K   +   +    +T LD  RA   +A  LG+   +V
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 215 DVPVVGGHAGVTILPLLSQV----KPSCSLTPTEI-------DYLTDRIQNGGTEVVE 261
              ++ G+   T  P ++      +         +             +Q  G  V++
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK 235

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  114 bits (289), Expect = 2e-30
 Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 33/234 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KVA++GA G +G   A  M +    + L L DV      G   DI+H    M   ++  G
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 67

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                   D +   D++++ AG  RKPG TR DL   N  I K + + I K     ++ +
Sbjct: 68  -----DYSD-VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    I   + +K       +++G  T+LD +R    ++E LG+D + V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 221 GH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
            H             AG  I   +   K + +    +   + + ++  G  +++
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCNFT--EEDKKKIAEDVKTAGATIIK 229

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  114 bits (289), Expect = 2e-30
 Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 31/233 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KV ++G+ G +G   A  + +  +   + L D+          DI H         F   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54

Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             +       L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    +  +V   +    P R++G  T+LD  R    +AE L + P+ V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 221 GHAGVTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVE 261
            H G + + + S                  +L+P +   + + ++     ++E
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE 222

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  115 bits (290), Expect = 2e-30
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 22/229 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H          +  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS 79

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +          +VII AG  ++ G +R +L   N  I K +   + K  P+  + ++SNP
Sbjct: 80  KDYSV-TANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    I   V  K+  +   R++G    LD  R    + E LG+ P      V+G H G
Sbjct: 139 VD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-G 193

Query: 225 VTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVE 261
            + +P+ S V            +        +   +  ++ +   EV++
Sbjct: 194 DSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIK 242

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  114 bits (288), Expect = 3e-30
 Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 10/190 (5%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+G    +G   A+ + +  L   + L DV+     G   D+ H          +  
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSG 81

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +       G  +V+I AG  ++ G +R +L   N  I K +   I K  P  +  L    
Sbjct: 82  KDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
                    +   K+      R++G    LD  R    + E LG+    V   V+G H G
Sbjct: 141 GT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQH-G 195

Query: 225 VTILPLLSQV 234
            ++  + S +
Sbjct: 196 DSVPSVWSGM 205

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  112 bits (283), Expect = 1e-29
 Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 25/239 (10%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----N 96
           +VAV GAAG IG  L        ML K  P++  L L ++        +   M+      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQA-MKALEGVVMELEDCAF 62

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+   K
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
            + V ++ NP N+   IA    K     +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE--IDYLTDRIQNGGTEVVEVIRGNWS 268
              V G+   T+ P L       +P+  L   E         +   G  +++  RG  S
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQA-RGASS 237

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  112 bits (283), Expect = 2e-29
 Identities = 54/236 (22%), Positives = 84/236 (35%), Gaps = 29/236 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 94
           +VAV GAAG I   L        ML K  P++  L L ++ N        GV  +I   D
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62

Query: 95  TNA-VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
               ++ G         A    D+ ++    PR PGM R DL   NA I     + I   
Sbjct: 63  CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122

Query: 154 CPK-AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR 212
             +   V ++ NP N+   IA    K   +   K    +  LD  RA + +A   G    
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179

Query: 213 EVDVPVVGGHAGVTILPLLSQV----KPSCSLTPTE---IDYLTDRIQNGGTEVVE 261
            ++   V G+   T+                +   +    D     +   G  +++
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIID 235

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  108 bits (272), Expect = 1e-27
 Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 28/241 (11%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
            +AV GAAG I   L        +  +  P+   L L     +     GV  ++   D+ 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89

Query: 97  AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              +R         +    +D  ++    PR PGM R  L +IN  I     + +     
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K + V ++ NP N+   I     K       K    +T LD  RA   +A   G+   +V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 215 DVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTDRIQNGGTEVVEVIRGNW 267
               + G+   T +P     K         I       +  T  +Q  G  +++   G  
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQK-WGRS 265

Query: 268 S 268
           S
Sbjct: 266 S 266

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  105 bits (264), Expect = 6e-27
 Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 39/236 (16%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHM-----DTNAVVR 100
           KV V+G  G +G   A  + +    S L L D           DI+H       T     
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
           G          L    +VI+ AG  +KPG +R DL   NA I + L   I +  P A++ 
Sbjct: 61  GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
           + SNPV+    +  ++  ++    P   ++G  T+LD  R    +A+  G+D       V
Sbjct: 114 VTSNPVD----LLTDLATQL---APGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYV 166

Query: 219 VGGH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE 261
           +G H             AG+ +   +                + +  +N    ++E
Sbjct: 167 LGEHGDSEVLAWSSAMVAGMPVADFMQAQNL--PWNEQVRAKIDEGTRNAAASIIE 220

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  102 bits (256), Expect = 8e-26
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 21/228 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G  +A  +    +       D           D      N    G +  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 106 QQLEDALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L   D+VI   G  +     P   R       + +V+++   + +     ++ +
Sbjct: 62  NDWAA-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ISNPV+    +   +F+ V  +   +++G  T+LD  R    V E   LDPR V    +G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLG 176

Query: 221 GHAGVTILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVE 261
            H G +     S V    +P  +L      ++  + +  + GG  V+ 
Sbjct: 177 EH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN 223

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 53.0 bits (126), Expect = 4e-08
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)

Query: 45  PGFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTN 96
           P  K+ ++GA G        ++ L K   L  S + L D+    ++     A     +  
Sbjct: 2   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-------------- 142
           A ++ F     L+D +   D VI  A V     + +        G               
Sbjct: 61  ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119

Query: 143 ------------VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                          +   I K  PKA     +NP+             V    P + +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPI-FEGTTL------VTRTVPIKAVG 172

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVG 220
                       + E LGL+  +VD  V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 51.6 bits (123), Expect = 9e-08
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 28/202 (13%)

Query: 47  FKVAVLGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF 102
            K+A +G  G  G     ++ L     +   + LYD+          I +   N   R +
Sbjct: 6   IKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR-Y 63

Query: 103 LGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNINAG--------- 141
                L+ AL+  DIVII                P + G+ +     +  G         
Sbjct: 64  EAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAV 123

Query: 142 -IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN 200
            I   +   I    P++ V   +NP++    +  +VF  +        +  T   +    
Sbjct: 124 PIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMV 183

Query: 201 TFVAEVLGLDPREVDVPVVGGH 222
           T    +      ++ V V+G +
Sbjct: 184 TERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 43/254 (16%)

Query: 46  GFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTNA 97
            F + + G  G    P   L +L  +    +  L LYD      +      D+   +   
Sbjct: 28  SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP 86

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI--------------- 142
            +  F      E+A T +D V+    V +      D+   +  G+               
Sbjct: 87  DIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGM 145

Query: 143 -----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV 197
                V  + + + K  P A +   SNP          +          ++L +  +  V
Sbjct: 146 RSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS------KILNICDM-PV 198

Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV--KPSCSLTPTEIDYLTDRIQNG 255
                +A++LGL  R+    +   + G+      + +  +    L P ++     +    
Sbjct: 199 GIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQDQEGNDLMP-KLKEHVSQYGYI 254

Query: 256 GTEVVEVIRGNWSD 269
                E +  +W+D
Sbjct: 255 PKTEAEAVEASWND 268

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 43/254 (16%), Positives = 77/254 (30%), Gaps = 40/254 (15%)

Query: 46  GFKVAVLGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTN 96
             K+A +G        + + L       P V  L L D+         +  +     +  
Sbjct: 7   RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNI------ 138
            V            AL G D V     V            P K G+   +          
Sbjct: 66  GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125

Query: 139 --NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV 196
                ++  +   + + CP A +   +NP            K+       +++G+  +  
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQE------KVVGLCNV-P 178

Query: 197 VRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGG 256
           +     VA++LG+D   V +   G +  V  L +         +T   ID +    ++G 
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV---EVTEKVIDLVAHPDRSGV 235

Query: 257 TEVVEVIRGNWSDL 270
           T    V  G   D 
Sbjct: 236 TMKNIVDLGWEPDF 249

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 33/245 (13%), Positives = 66/245 (26%), Gaps = 78/245 (31%)

Query: 28  GESSGLGRMDCRAKG--GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 85
           G++  +    C +        FK+  L        P  +L  +  L+  +        P 
Sbjct: 162 GKTW-VALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQI-------DPN 212

Query: 86  VTADISHM--------DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFN 137
            T+   H            A +R  L  +  E+ L    +V+              ++  
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVL-------------LNVQ- 254

Query: 138 INAGIVKTLCEGIAKCCPKAIV----NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM 193
            NA         +  C  K ++      +++ +++       +     T  P  +  +  
Sbjct: 255 -NAKAWNAF--NL-SC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-- 306

Query: 194 LDVVRANTFVAEVLGLD----PREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLT 249
                    + + L       PREV          +T  P         S+    I    
Sbjct: 307 ---------LLKYLDCRPQDLPREV----------LTTNPRR------LSIIAESIRDGL 341

Query: 250 DRIQN 254
               N
Sbjct: 342 ATWDN 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.97
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	99.96
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	99.96
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	99.96
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.92
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.91
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.89
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.14
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.09
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.08
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.08
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.07
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.06
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.06
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.01
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.98
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.96
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.95
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.94
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.93
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.93
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.93
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.93
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.92
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.92
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.92
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.92
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.91
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.89
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.89
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.88
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.88
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.87
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.86
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.85
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.85
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.83
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	98.83
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.83
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	98.82
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.82
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.82
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.82
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.81
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.81
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.8
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	98.78
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.78
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.78
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.78
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.78
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.76
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.76
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.76
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.76
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.75
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	98.74
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.74
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.72
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.72
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.7
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	98.7
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.7
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.69
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.69
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.69
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.68
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.68
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.67
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.67
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.67
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.65
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.64
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.63
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	98.63
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.63
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.63
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.63
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.63
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.63
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	98.62
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.61
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	98.61
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.59
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.58
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.57
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.57
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	98.57
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.55
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.55
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	98.54
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.54
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	98.53
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.53
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	98.52
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.5
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.48
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.46
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.46
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	98.45
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.44
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	98.44
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	98.44
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.43
4f6c_A	427	AUSA reductase domain protein; thioester reductase	98.43
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.43
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.43
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	98.41
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.41
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.41
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	98.4
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.39
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.39
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.37
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	98.36
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.35
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.35
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	98.35
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.34
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.33
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	98.33
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.32
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	98.32
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	98.32
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.31
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.3
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	98.3
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.3
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	98.3
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.3
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	98.3
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.29
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	98.29
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	98.28
4f6l_B	508	AUSA reductase domain protein; thioester reductase	98.27
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.26
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	98.26
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.26
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.26
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.26
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	98.26
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	98.25
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	98.25
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	98.25
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.25
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.25
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.24
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	98.24
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	98.24
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	98.24
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.24
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.24
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.24
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	98.24
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.23
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	98.23
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.23
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	98.23
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.23
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	98.23
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	98.23
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.23
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	98.22
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	98.22
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.22
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	98.22
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.21
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	98.21
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	98.21
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	98.19
3cxt_A	291	Dehydrogenase with different specificities; rossma	98.19
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	98.19
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.18
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	98.18
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	98.18
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.18
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.18
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	98.17
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.17
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.17
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	98.17
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	98.17
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.16
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	98.16
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	98.16
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	98.16
1xq1_A	266	Putative tropinone reducatse; structural genomics,	98.15
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	98.15
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	98.15
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	98.14
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	98.14
1spx_A	278	Short-chain reductase family member (5L265); paral	98.14
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.14
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	98.14
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	98.14
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	98.13
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	98.13
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.13
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	98.12
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.12
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.12
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	98.12
3rih_A	293	Short chain dehydrogenase or reductase; structural	98.12
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	98.12
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.12
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.12
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.12
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	98.11
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.11
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	98.11
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.11
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	98.11
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	98.11
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	98.11
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.11
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	98.1
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	98.1
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.1
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.09
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	98.09
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.09
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	98.09
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	98.08
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	98.08
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	98.08
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	98.08
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	98.08
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	98.08
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	98.07
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	98.07
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	98.07
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	98.07
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	98.07
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	98.07
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.07
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	98.06
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	98.06
4dqx_A	277	Probable oxidoreductase protein; structural genomi	98.06
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	98.05
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	98.05
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	98.05
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	98.05
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	98.05
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.05
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	98.05
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	98.04
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	98.04
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	98.04
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	98.04
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	98.04
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	98.04
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	98.04
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	98.04
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.04
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	98.04
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.04
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	98.04
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	98.03
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	98.03
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	98.03
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.02
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	98.02
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	98.02
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	98.02
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	98.02
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	98.02
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.02
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	98.02
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	98.02
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	98.01
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	98.01
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.01
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	98.01
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	98.01
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	98.01
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.01
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	98.0
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.99
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.99
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.99
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.99
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.98
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.98
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.98
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.98
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.98
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.98
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.97
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.97
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.97
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.97
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.96
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.96
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.96
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.96
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.96
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.96
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.96
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.95
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.95
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.95
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.95
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.95
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.94
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.94
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.94
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.93
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.93
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.93
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.93
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.93
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.92
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.92
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.91
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.91
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.91
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.91
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.9
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.9
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.9
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.9
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.89
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.89
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.89
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.88
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.88
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.88
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.88
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.87
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.87
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.87
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.87
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.87
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.87
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.86
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.86
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.85
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.85
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.85
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.85
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.84
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.84
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.84
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.84
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.83
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.83
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.82
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.82
4e4y_A	244	Short chain dehydrogenase family protein; structur	97.82
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.82
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.82
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.82
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.81
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.79
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.78
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.78
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.78
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.78
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.78
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.77
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.77
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.77
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.77
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.76
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.76
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.75
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.75
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.74
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.74
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.73
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.73
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.72
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.72
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.72
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.72
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.71
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.71
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.71
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.71
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.71
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.7
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.67
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.66
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.66
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.64
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.59
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.58
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.58
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.55
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.53
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.53
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.51
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.5
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.64
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.5
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.5
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.49
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.46
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	97.45
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.45
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	97.43
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.42
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.42
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.37
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	97.37
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.34
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.34
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	97.33
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.32
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.32
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.31
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	97.3
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	97.28
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	97.27
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.25
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.22
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.2
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.16
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.15
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.14
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.13
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	97.12
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	97.12
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.11
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.11
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.1
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.1
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.08
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.07
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	97.06
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.06
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	97.05
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.05
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.04
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.03
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.01
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	97.01
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.01
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.0
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.0
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.98
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.96
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.96
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.95
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.94
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.93
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.93
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.92
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.91
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.91
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.9
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.87
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.86
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.85
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.84
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.83
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.82
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.82
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.81
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	96.81
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.8
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.77

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=1.7e-46  Score=342.20  Aligned_cols=219  Identities=59%  Similarity=0.913  Sum_probs=188.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCC-ChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~-~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+|+||+|.||+++++.|+.+ ++.+||+|+|+++ ..++++||.|......+..+..++++ ++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~-~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCH-HHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcH-HHhCCCCEEEEeCCC
Confidence            79999997799999999999886 7888999999986 46889999997432233322122344 889999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC-CCCCeeeechhhHHHHHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY-DPKRLLGVTMLDVVRANTFV  203 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~-p~~kviG~t~ldt~r~~~~l  203 (270)
                      |+++|++|.|++..|+++++++++.+.++||+++++++|||+|.+|+++++ +++.+|+ |++|++|+|.||+.|+++++
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~-~~k~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAE-VLKKAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHH-HHHHTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHH-HHHHcCCCCcceEEEEechhHHHHHHHH
Confidence            999999999999999999999999999999999999999999966555444 4566787 99999999999999999999


Q ss_pred             HHHhCCCCCccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCCCC
Q 024248          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS  268 (270)
Q Consensus       204 A~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s  268 (270)
                      |+++|+++++|+++|||||+++++||+||++. -..+++++|++|.++|+++|++|+++|.|.+|
T Consensus       159 a~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~~-g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gs  222 (312)
T 3hhp_A          159 AELKGKQPGEVEVPVIGGHSGVTILPLLSQVP-GVSFTEQEVADLTKRIQNAGTEVVEAKAGGGS  222 (312)
T ss_dssp             HHHHTCCGGGCCCCEEECSSGGGEEECGGGCT-TCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCC
T ss_pred             HHHhCcChhHcceeEEeccCCCceeeecccCC-CCCCCHHHHHHHHHHHHhhhHHHHhhccCCCC
Confidence            99999999999999999995558999999983 33477888999999999999999999854433

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=1.6e-47  Score=351.41  Aligned_cols=218  Identities=24%  Similarity=0.362  Sum_probs=194.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      ..+.+||+|||+ |.||+++++.++.++++++|+|+|+++.  +++++||.|...++....+..++|+ ++++|||+||+
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi   93 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVII   93 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEE
Confidence            455679999998 9999999999999999999999999864  6788999998544433334456788 57999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHH
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~  199 (270)
                      ++|.++++|++|+|++.+|+++++++++.++++||+++++++|||+|    ++++++++.+++|++|+||+ |.||+.|+
T Consensus        94 ~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd----i~t~~~~k~sg~p~~rviG~gt~LD~~R~  169 (331)
T 4aj2_A           94 TAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARF  169 (331)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHHhCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999    68888899999999999999 99999999


Q ss_pred             HHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCC--------CCChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSC--------SLTPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~--------~~~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      ++++|+++|++|++|+++||||||+ ++||+||+++    |+.        .+++++|++|.++|+++|++|+++||+++
T Consensus       170 ~~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~t~  248 (331)
T 4aj2_A          170 RYLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTS  248 (331)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcCCCCc
Confidence            9999999999999999999999998 7999999996    322        13567799999999999999999998764

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=4.1e-46  Score=340.29  Aligned_cols=221  Identities=61%  Similarity=1.003  Sum_probs=199.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||+||||+|+||++++..|+..+++.+|+|+|+++.++.++||.|......+.....++|++++++|||+||+++|.++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            79999998899999999999999988899999998866788899987533334322234689889999999999999999


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHH
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~  206 (270)
                      ++|++|.|++.+|+++++++++.+++++|+++++++|||+|.+++++++++++.++||++|++|+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988888899999999999999999999999999999999


Q ss_pred             hCCCCCccceEEEccC-CCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCCCC
Q 024248          207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWS  268 (270)
Q Consensus       207 l~v~~~~v~~~V~G~h-g~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s  268 (270)
                      +|++|++|+++||||| |+ +++|+||+++|..++++++|+++.++++++|++|++.|.|.+|
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~  222 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGS  222 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence            9999999999999999 56 7999999999877788888999999999999999998755444

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=4.1e-47  Score=350.23  Aligned_cols=216  Identities=29%  Similarity=0.428  Sum_probs=185.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.+||+|||++|+||+++++.++..|++.||+|+|+++.  +++++||.|.. ++..+ +..++|++++++|||+||+++
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~-~~~~~-i~~t~d~~~al~dADvVvita   84 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG-FEGLN-LTFTSDIKEALTDAKYIVSSG   84 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC-CTTCC-CEEESCHHHHHTTEEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc-CCCCc-eEEcCCHHHHhCCCCEEEEcc
Confidence            356999999779999999999999998889999999864  67889999974 33222 334678888999999999999


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCE-EEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~-viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~  201 (270)
                      |.|+++|++|.|++..|+++++++++.+++++|+++ ++++|||+|    ++++++++.+|||++||+|.|.||++||++
T Consensus        85 G~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd----~~t~i~~k~sg~p~~rv~g~t~LDs~R~~~  160 (343)
T 3fi9_A           85 GAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPAD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQS  160 (343)
T ss_dssp             C-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHH----HHHHHHHHHHTCCGGGEEEECCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchH----HHHHHHHHHcCCCcceEEEecCcHHHHHHH
Confidence            999999999999999999999999999999999996 899999999    567777888899999999999999999999


Q ss_pred             HHHHHhCCCCCccc-eEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          202 FVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       202 ~lA~~l~v~~~~v~-~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      ++|+++|++|++|+ ++||||||+ ++||+||+++    |+.+      +++++|++|.++|+++|++|+++||+++
T Consensus       161 ~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~ss  236 (343)
T 3fi9_A          161 ELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSS  236 (343)
T ss_dssp             HHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHHSSCC
T ss_pred             HHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHccCCCc
Confidence            99999999999996 899999998 7999999986    6543      3677899999999999999999998764

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=2e-46  Score=338.96  Aligned_cols=209  Identities=23%  Similarity=0.378  Sum_probs=184.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC--ChhHHHHhhccccCc-ceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~--~~~~~~dl~~~~~~~-~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||| |.||+++++.|+.+++++||+|||+++  .+|+++||.|..... ....+..++|+ ++++|||+||++||
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitAG   78 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAG   78 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEecC
Confidence            89999997 999999999999999999999999987  478999999975422 12223456677 68999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .|++||++|+|++..|.++++++++.+.+++|+++++++|||+|    ++++++++.+|+|++|+||+ |.||++||+++
T Consensus        79 ~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd----~~t~i~~k~sg~p~~rvig~gT~LDs~R~~~~  154 (294)
T 2x0j_A           79 LARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKER  154 (294)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSSCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcch----hhHHhhHHHcCCChhhEEEeeeEEeHHHHHHH
Confidence            99999999999999999999999999999999999999999999    57777899999999999999 99999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      +++.++.++.  +++||||||+ ++||+||+++...   ..+++++.++++++|++|+++||.+.
T Consensus       155 l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g---~~~~~~i~~~~~~~g~eIi~~kGst~  213 (294)
T 2x0j_A          155 LYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRKGATI  213 (294)
T ss_dssp             HHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEES---CCCHHHHHHHHHTHHHHHHHHHSSCC
T ss_pred             HhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCC---chhHHHHHHHHhhhheEEEecCcccc
Confidence            9999877643  7899999998 7999999997421   23577889999999999999997654

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.7e-46  Score=344.00  Aligned_cols=215  Identities=24%  Similarity=0.392  Sum_probs=174.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .+.|||+|||+ |.||+++++.|+..+++++|+|+|+++.  +++++||.|...+ ..+. + .++++ ++++|||+||+
T Consensus         7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~-i-~~~~~-~a~~~aDiVvi   82 (326)
T 3vku_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKK-I-YSAEY-SDAKDADLVVI   82 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCE-E-EECCG-GGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcE-E-EECcH-HHhcCCCEEEE
Confidence            44679999997 9999999999999999999999999864  6788999997532 1222 1 23455 78999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHH
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~  199 (270)
                      ++|.++++|++|.|++..|+++++++++.+.++||+++++++|||+|    ++++++++.++||++|++|+ |.||+.|+
T Consensus        83 ~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvd----i~t~~~~k~~g~p~~rviG~gt~LD~~R~  158 (326)
T 3vku_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARF  158 (326)
T ss_dssp             CCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchH----HHHHHHHHhcCCCHHHeeeecccCcHHHH
Confidence            99999999999999999999999999999999999999999999999    68888899999999999999 99999999


Q ss_pred             HHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC-------ChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL-------TPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~-------~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      ++++|+++|++|++|+++||||||+ ++||+||+++    |+.++       +++++++|.++|+++|++|+++||.+.
T Consensus       159 ~~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kG~t~  236 (326)
T 3vku_A          159 RQSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATF  236 (326)
T ss_dssp             HHHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            9999999999999999999999988 7999999997    43222       466788999999999999999997654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=5.5e-46  Score=339.17  Aligned_cols=211  Identities=27%  Similarity=0.516  Sum_probs=181.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCc--ceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNA--VVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~--~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|+|+ |.||+++++.|+..+++++|+|+|+++.  +++++||.|.....  ..+ +..++++ ++++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~-v~~~~~~-~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTR-VTGTNDY-GPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCE-EEEESSS-GGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcE-EEECCCH-HHhCCCCEEEECC
Confidence            89999997 9999999999999999999999999885  67789999874321  122 2334455 8899999999999


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec-hhhHHHHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANT  201 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t-~ldt~r~~~  201 (270)
                      |.++++|++|.|++..|+++++++++.+.++||+++++++|||+|    ++++++++.+|||++|++|+| .||+.|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd----~~t~~~~k~~g~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHH----HHHHHHHHHHTCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchh----HHHHHHHHhcCCChHHEEeecCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999    567777888899999999995 999999999


Q ss_pred             HHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHhhcCC
Q 024248          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVEVIRG  265 (270)
Q Consensus       202 ~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~~k~~  265 (270)
                      ++|+++|++|++|+++||||||+ ++||+||+++    |+.+ ++++++++|.++|+++|++|++.||.
T Consensus       154 ~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~  221 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLMGT  221 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHHSS
T ss_pred             HHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhccCC
Confidence            99999999999999999999998 7999999987    6555 46777899999999999999999975

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=8.8e-46  Score=339.42  Aligned_cols=214  Identities=28%  Similarity=0.387  Sum_probs=189.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC--cceeeeeccCCHHHHhCCCCEEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~--~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      +.|||+|||+ |.||+++++.|+..+++++|+|+|+++.  +++++||.|....  ..+. + .++++ +++++||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~-i-~~~~~-~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVK-T-SYGTY-EDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCE-E-EEECG-GGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeE-E-EeCcH-HHhCCCCEEEE
Confidence            3579999997 9999999999999999899999999864  6778999987322  1222 2 24455 78999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHH
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~  199 (270)
                      ++|.++++|++|.|++..|+++++++++.+.++||+++++++|||+|    ++++++++.++||++|++|+ |.||+.|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd----~~t~~~~k~~g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHH----HHHHHHHHhcCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999    67888889999999999999 99999999


Q ss_pred             HHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC-------ChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL-------TPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~-------~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      ++++|+++|++|++|+++||||||+ ++||+||+++    |+.++       +++++++|.++|+++|++|+++||.+.
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kG~t~  233 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATY  233 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeCCCCcH
Confidence            9999999999999999999999988 7999999997    43222       566789999999999999999997653

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.7e-44  Score=331.18  Aligned_cols=223  Identities=88%  Similarity=1.332  Sum_probs=197.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .++|||+||||+|+||++++..|+.++++.+|+|+|+++..+.++||.+......+..+..++|++++++|||+||+++|
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            45689999997799999999999998877799999998766778889886432233333335688899999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~l  203 (270)
                      .+++++++|.+++..|+++++++++.+++++|+++++++|||+|.+|+++++.+++.++||++|++|+|.||+.|+++++
T Consensus        86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~l  165 (326)
T 1smk_A           86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFV  165 (326)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCccceEEEccC-CCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          204 AEVLGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       204 A~~l~v~~~~v~~~V~G~h-g~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      |+.+|++|++|+++||||| |+ +++|+||+++...++++++++++.++++++|++|++.|.|.+
T Consensus       166 a~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g  229 (326)
T 1smk_A          166 AEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAG  229 (326)
T ss_dssp             HHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            9999999999999999999 65 799999999865457788899999999999999999873333

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=5.6e-45  Score=329.80  Aligned_cols=208  Identities=23%  Similarity=0.372  Sum_probs=185.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhcccc-CcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~-~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|+|+ |.+|+++++.|+..+++++|+|+|++++  +++++|+.|... ++.-..+..++| +++++|||+||+++|
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag   78 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAG   78 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCC
Confidence            79999998 9999999999999999899999999874  456788888642 221112444667 589999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .++++|++|.|++.+|+++++++++.+.++||+++++++|||+|    ++++++++.+|||++|++|+ |.||+.|++++
T Consensus        79 ~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd----~~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~  154 (294)
T 1oju_A           79 LARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKER  154 (294)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSCCCTTSEEECSHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcch----HHHHHHHHhcCCCHHHEeecccccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    67888899999999999999 89999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +| ++|++|++ +++||||||+ ++||+||+++.. ..+  ++++|.++|+++|++|+++||.+
T Consensus       155 la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~-g~~--~~~~~~~~v~~~g~eii~~kG~t  212 (294)
T 1oju_A          155 LY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFD-GEV--DWEAVENDVRFVAAEVIKRKGAT  212 (294)
T ss_dssp             HH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCB-SCC--CHHHHHHHHHTTHHHHHHHHSSC
T ss_pred             HH-HhCCCccC-ceEEEecCCC-ceeeecccceEC-CcC--hHHHHHHHHHHHHHHHHHhcCCc
Confidence            99 99999999 9999999988 799999999842 222  68899999999999999999754

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=4.4e-44  Score=332.39  Aligned_cols=217  Identities=22%  Similarity=0.252  Sum_probs=185.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccE---EEEEeCCC------ChhHHHHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV---LHLYDVVN------TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~e---V~LvD~~~------~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      +++||+|+||+|.||+++++.|+.++++++   |+|+|.+.      .+|+++||.|... +.+..+..+++..++++||
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~-p~~~~v~i~~~~y~~~~da  109 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDPYEVFEDV  109 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhh-hhcCCcEEecCCHHHhCCC
Confidence            357999999779999999999999999887   77776653      2678899999853 2222222234445899999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-ch
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM  193 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~  193 (270)
                      |+||+++|.|+++|++|+|++..|+++++++++.|.++ +|+++++++|||+|    ++++++++.++++++|+||. |.
T Consensus       110 DvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD----~~t~ia~k~sg~~~~rvig~gT~  185 (375)
T 7mdh_A          110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN----TNALICLKNAPDIPAKNFHALTR  185 (375)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEECCH
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh----HHHHHHHHHcCCCCccEEEeeeh
Confidence            99999999999999999999999999999999999998 79999999999999    57777788877777888888 99


Q ss_pred             hhHHHHHHHHHHHhCCCCCccce-EEEccCCCCceeecccccc----CCCCCC-hhHH--HHHHHHHHhhHHHHHhhcCC
Q 024248          194 LDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVK----PSCSLT-PTEI--DYLTDRIQNGGTEVVEVIRG  265 (270)
Q Consensus       194 ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg~~~~vp~~S~~~----p~~~~~-~~~~--~~i~~~v~~~~~~i~~~k~~  265 (270)
                      ||++||++++|+++|++|++|+. +||||||+ ++||+||+++    |+.++. +++|  ++|.++|+++|++|+++||+
T Consensus       186 LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~  264 (375)
T 7mdh_A          186 LDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGR  264 (375)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999985 99999997 7999999997    766643 3445  68999999999999999977


Q ss_pred             CC
Q 024248          266 NW  267 (270)
Q Consensus       266 ~~  267 (270)
                      ++
T Consensus       265 ts  266 (375)
T 7mdh_A          265 SS  266 (375)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=1e-44  Score=331.07  Aligned_cols=213  Identities=31%  Similarity=0.504  Sum_probs=187.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC----ChhHHHHhhccccCc-ceeeeeccCCHHHHhCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~----~~~~~~dl~~~~~~~-~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .+||+|+|+ |.+|+++++.++..|+ ++|+|+|+++    .++.++|+.|..... ....+..++|+ +++++||+||+
T Consensus         8 ~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~-~a~~~aDvVIi   84 (315)
T 3tl2_A            8 RKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDY-ADTADSDVVVI   84 (315)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCH-HHhCCCCEEEE
Confidence            469999997 9999999999999999 8999999983    256778888763211 11123445676 78999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHH
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~  199 (270)
                      ++|.|+++|++|.|++.+|+++++++++.+.++||+++++++|||+|    ++++++++.+|||++|++|+ |.||+.|+
T Consensus        85 aag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd----~~t~~~~k~sg~p~~rviG~gt~LD~~R~  160 (315)
T 3tl2_A           85 TAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARF  160 (315)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHH----HHHHHHHHhcCCChHHEEeeccCcHHHHH
Confidence            99999999999999999999999999999999999999999999999    56777788889999999999 99999999


Q ss_pred             HHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHh--hcCCC
Q 024248          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVE--VIRGN  266 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~--~k~~~  266 (270)
                      ++++|+++|+++++|+++||||||+ ++||+||+++    |+.+ ++++++++|.++|+++|++|++  +||.+
T Consensus       161 ~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~~kgst  233 (315)
T 3tl2_A          161 RTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLLGNGSA  233 (315)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHHSSSCC
T ss_pred             HHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999999988 8999999997    6655 5677789999999999999999  66544

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=6.3e-44  Score=328.97  Aligned_cols=220  Identities=28%  Similarity=0.394  Sum_probs=182.0

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCCC----hhHHHHhhccccCcceeeeeccCCHHHHh
Q 024248           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT----PGVTADISHMDTNAVVRGFLGQQQLEDAL  112 (270)
Q Consensus        42 ~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~~----~~~~~dl~~~~~~~~~~~i~~t~d~~~al  112 (270)
                      ...++.||+|+||+|.||++++++|++.++++     ||+|||+++.    +|.++||.|.. ++....+..+++.++++
T Consensus        20 ~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~-~~~~~~~~~~~~~~~a~   98 (345)
T 4h7p_A           20 GSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCA-FPLLDKVVVTADPRVAF   98 (345)
T ss_dssp             --CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTT-CTTEEEEEEESCHHHHT
T ss_pred             CCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcC-ccCCCcEEEcCChHHHh
Confidence            34455699999988999999999999988765     9999999763    57789999985 34333334456778999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHH-HhCCCCCCCeee
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFK-KVGTYDPKRLLG  190 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~-~~sg~p~~kviG  190 (270)
                      +|||+||+++|.|++||++|.|++..|.++++++++.|.+++ |+++++++|||+|++    +++++ +.+|+|++|+||
T Consensus        99 ~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~----~~i~~~~~~g~~~~r~i~  174 (345)
T 4h7p_A           99 DGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTN----ALILLKSAQGKLNPRHVT  174 (345)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH----HHHHHHHTTTCSCGGGEE
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchH----HHHHHHHccCCCCcceee
Confidence            999999999999999999999999999999999999999997 789999999999954    44444 466887777776


Q ss_pred             e-chhhHHHHHHHHHHHhCCCCCccc-eEEEccCCCCceeecccccc----CCCC-CChhHH-HHHHHHHHhhHHHHHhh
Q 024248          191 V-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVK----PSCS-LTPTEI-DYLTDRIQNGGTEVVEV  262 (270)
Q Consensus       191 ~-t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~-~~i~~~v~~~~~~i~~~  262 (270)
                      . |.||+.|+++++|+++|++|++|+ .+||||||+ ++||+||+++    |+.+ ++++.+ +++.++++++|++|++.
T Consensus       175 ~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~  253 (345)
T 4h7p_A          175 AMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQL  253 (345)
T ss_dssp             ECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHHHHH
T ss_pred             eccchhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhhhhc
Confidence            6 999999999999999999999996 578999998 7999999996    4444 333333 47999999999999999


Q ss_pred             cCCCC
Q 024248          263 IRGNW  267 (270)
Q Consensus       263 k~~~~  267 (270)
                      ||+++
T Consensus       254 kg~ss  258 (345)
T 4h7p_A          254 RGLSS  258 (345)
T ss_dssp             HSSCC
T ss_pred             CCCcc
Confidence            98754

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=2.9e-44  Score=328.87  Aligned_cols=211  Identities=34%  Similarity=0.592  Sum_probs=186.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC--cceeeeeccCCHHHHhCCCCEEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~--~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      +.|||+|||+ |.+|+++++.|+..++. +|+|+|++++  ++.++||.|....  .... +..++|+ ++++|||+||+
T Consensus         4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~-v~~t~d~-~a~~~aDvVIi   79 (321)
T 3p7m_A            4 ARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFK-VRGTNDY-KDLENSDVVIV   79 (321)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCC-EEEESCG-GGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcE-EEEcCCH-HHHCCCCEEEE
Confidence            4579999997 99999999999999987 9999999875  5678899987421  1111 3345676 79999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec-hhhHHHH
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA  199 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t-~ldt~r~  199 (270)
                      ++|.++++|++|.|++.+|+++++++++.+.++||+++++++|||+|    ++++++++.+++|++|++|+| .||+.|+
T Consensus        80 ~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd----~~t~~~~k~sg~p~~rviG~~~~LD~~R~  155 (321)
T 3p7m_A           80 TAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARF  155 (321)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEEECHHHHHHHH
T ss_pred             cCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchH----HHHHHHHHhcCCCHHHEEeeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999    677888999999999999996 9999999


Q ss_pred             HHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHhhcC
Q 024248          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVEVIR  264 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~~k~  264 (270)
                      ++++|+++|++|++|+++||||||+ ++||+||+++    |+.+      ++++++++|.++|+++|++|++.||
T Consensus       156 ~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~g  229 (321)
T 3p7m_A          156 RTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLK  229 (321)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred             HHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhcC
Confidence            9999999999999999999999987 7999999997    4322      3677889999999999999999763

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=1.8e-44  Score=330.55  Aligned_cols=212  Identities=32%  Similarity=0.573  Sum_probs=181.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCc--ceeeeeccCCHHHHhCCCCEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNA--VVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~--~~~~i~~t~d~~~al~~ADvV  118 (270)
                      .++.|||+|||+ |.+|+++++.|+..++. +|+|+|++++  ++.++||.|.....  ... +..++|+ ++++|||+|
T Consensus         4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-v~~t~d~-~a~~~aDiV   79 (324)
T 3gvi_A            4 SMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAK-FTGANDY-AAIEGADVV   79 (324)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCC-EEEESSG-GGGTTCSEE
T ss_pred             CCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCE-EEEeCCH-HHHCCCCEE
Confidence            455679999998 99999999999999986 9999999885  55778998864211  111 3446687 899999999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec-hhhHH
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVV  197 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t-~ldt~  197 (270)
                      |+++|.|+++|++|.|++.+|+++++++++.++++||+++++++|||+|    ++++++++.++||++|++|+| .||+.
T Consensus        80 Iiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd----~~t~~~~k~sg~p~~rviG~~~~LD~~  155 (324)
T 3gvi_A           80 IVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSA  155 (324)
T ss_dssp             EECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHH
T ss_pred             EEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcH----HHHHHHHHhcCCCHHHEEeecCccHHH
Confidence            9999999999999999999999999999999999999999999999999    577778888999999999996 89999


Q ss_pred             HHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHhhc
Q 024248          198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       198 r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      |+++++|+++|+++++|+++||||||+ ++||+||+++    |+.+      ++++++++|.++|+++|++|++.|
T Consensus       156 R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~  230 (324)
T 3gvi_A          156 RFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL  230 (324)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc
Confidence            999999999999999999999999988 7999999987    4332      367788999999999999999976

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=3.2e-45  Score=335.48  Aligned_cols=206  Identities=21%  Similarity=0.263  Sum_probs=185.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      .+.+||+|+|+ |.||+++++.++..|++++|+|+|+++.  ++.++||.|...+.....+..++|++ +++|||+||++
T Consensus        19 ~~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~-~~~daDiVIit   96 (330)
T 3ldh_A           19 RSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-VSAGSKLVVIT   96 (330)
T ss_dssp             CCCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC-SCSSCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH-HhCCCCEEEEe
Confidence            35689999998 9999999999999999999999999864  67889999875443333345567885 59999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~  200 (270)
                      +|.++++|++|+|++.+|+++++++++.+.+++|+++++++|||+|    ++++++++.+|||++|+||+ |.||+.|++
T Consensus        97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvd----i~t~~~~k~sg~p~~rViG~gt~LDs~R~~  172 (330)
T 3ldh_A           97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFR  172 (330)
T ss_dssp             CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEECCTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccH----HHHHHHHHHhCCCHHHeecccCchhHHHHH
Confidence            9999999999999999999999999999999999999999999999    67888888889999999999 799999999


Q ss_pred             HHHHHHhCCCCCccceEEEccCCCCceeeccccccCCCCCChhHH-HHHHHHHHhhHHHHHhhcCCC
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-DYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~-~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +++|+++|++|++|+++||||||+ ++||+||+          +| ++|.++|+++|++|+++||.+
T Consensus       173 ~~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~----------~~~~~~~~~v~~~g~eii~~kg~t  228 (330)
T 3ldh_A          173 YLMGERLGVHSCLVIGWVIGQHGD-SVPSVWSG----------MWDAKLHKDVVDSAYEVIKLKGYT  228 (330)
T ss_dssp             HHHHHHHTSCTTTCCEEECSSSST-TCCEEEEE----------EEETTEEHHHHHCCCTTSTTCHHH
T ss_pred             HHHHHHhCCCHHHeEEEEEcCCCC-ceeeechh----------hHHHHHHHHHHHHHHHHHHccCCc
Confidence            999999999999999999999988 79999999          23 678889999999999999754

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=1.5e-43  Score=325.64  Aligned_cols=217  Identities=24%  Similarity=0.339  Sum_probs=183.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccE-----EEEEeCCC----ChhHHHHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~e-----V~LvD~~~----~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      ++|||+|+||+|+||+++++.|+..+++++     |+|+|+++    .+|+++||.|... +.+..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~-~~~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh-cccCCEEEcCCcHHHhCCC
Confidence            468999999889999999999999999888     99999975    2678899999742 3333344455667899999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCC-EEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-ch
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA-IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM  193 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~  193 (270)
                      |+||+++|.++++|++|.|++..|+++++++++.+++++|++ +++++|||+|    ++++++++.++++|+++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd----~~t~~~~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN----TNCLTASKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchH----HHHHHHHHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999987 6999999999    67777888876555556765 99


Q ss_pred             hhHHHHHHHHHHHhCCCCCccceE-EEccCCCCceeeccccccC-CC-------C-CChhHH--HHHHHHHHhhHHHHHh
Q 024248          194 LDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKP-SC-------S-LTPTEI--DYLTDRIQNGGTEVVE  261 (270)
Q Consensus       194 ldt~r~~~~lA~~l~v~~~~v~~~-V~G~hg~~~~vp~~S~~~p-~~-------~-~~~~~~--~~i~~~v~~~~~~i~~  261 (270)
                      ||+.|+++++|+++|++|++|+++ ||||||+ ++||+||++++ +.       + +.+++|  ++|.++|+++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 5999998 79999999862 11       1 122334  5799999999999999


Q ss_pred             hcCCCC
Q 024248          262 VIRGNW  267 (270)
Q Consensus       262 ~k~~~~  267 (270)
                      +||+++
T Consensus       236 ~k~~ss  241 (333)
T 5mdh_A          236 ARKLSS  241 (333)
T ss_dssp             HHSSCC
T ss_pred             ccCchH
Confidence            988764

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.5e-43  Score=323.91  Aligned_cols=212  Identities=25%  Similarity=0.412  Sum_probs=178.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +|||+|||| |.||+++++.|+..++++||+|+|+++.  ++.++||.|...+ ..+. +. .++ .++++|||+||+++
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~-v~-~~~-~~a~~~aDvVii~a   80 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK-IY-SGE-YSDCKDADLVVITA   80 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE-EE-ECC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeE-EE-ECC-HHHhCCCCEEEECC
Confidence            479999998 9999999999999999999999999863  5678899887522 1222 22 234 48899999999999


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~  201 (270)
                      |.++++|++|.|++.+|+++++++++.+++++|+++++++|||+|    ++++++++.++||++|+||+ |.||+.|+++
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHH----HHHHHHHHHcCCCHHHEEeccccchHHHHHH
Confidence            999999999999999999999999999999999999999999999    68888899999999999999 9999999999


Q ss_pred             HHHHHhCCCCCccceEEEccCCCCceeecccccc----CCC------CCChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSC------SLTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       202 ~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~------~~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      ++|+++|++|++|+++||||||+ +++|+||+++    |+.      .++++.++++.++++++|++|+++||.+
T Consensus       157 ~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t  230 (318)
T 1ez4_A          157 ALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGAT  230 (318)
T ss_dssp             HHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCCCcc
Confidence            99999999999999999999998 7999999986    332      2566678899999999999999999765

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2.6e-43  Score=323.25  Aligned_cols=214  Identities=24%  Similarity=0.404  Sum_probs=183.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .++|||+|||| |.||+++++.|+..++++||+|+|+++.  ++.++||.|.... ..+. +. .++ .++++|||+||+
T Consensus         7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~-i~-~~~-~~a~~~aDvVii   82 (326)
T 2zqz_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKK-IY-SAE-YSDAKDADLVVI   82 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCE-EE-ECC-GGGGGGCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeE-EE-ECC-HHHhCCCCEEEE
Confidence            44589999998 9999999999999999999999999863  5678899887422 1222 22 234 488999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHH
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~  199 (270)
                      ++|.++++|++|.+++.+|+++++++++.++++||+++++++|||+|    ++++++++.++||++|+||+ |.||+.|+
T Consensus        83 ~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~  158 (326)
T 2zqz_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARF  158 (326)
T ss_dssp             CCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HHHHHHHHHcCCCHHHEEEccccchHHHH
Confidence            99999999999999999999999999999999999999999999999    68888899999999999999 99999999


Q ss_pred             HHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCC-------CCChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSC-------SLTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~-------~~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      ++++|+++|+++++|+++||||||+ +++|+||+++    |+.       .++++.++++.++++++|++|+++||.+
T Consensus       159 ~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kG~t  235 (326)
T 2zqz_A          159 RQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGAT  235 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHHSCC
T ss_pred             HHHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcCCCc
Confidence            9999999999999999999999998 7999999986    321       2456678899999999999999999765

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=4.3e-43  Score=319.79  Aligned_cols=211  Identities=24%  Similarity=0.414  Sum_probs=186.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||+ |.||+++++.|+.+++++||+|+|+++.  ++.++||.|...+ .... +.. ++ .++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~-v~~-~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVW-VWA-GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCE-EEE-CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeE-EEE-CC-HHHhCCCCEEEECCC
Confidence            69999998 9999999999999999999999999863  5678899987422 1222 222 35 478999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .++++|++|.+++.+|.++++++++.+++++|+++++++|||+|    ++++++++.++||++|+||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchH----HHHHHHHHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999    67888889899999999999 99999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC--------CChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS--------LTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~--------~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +|+++|+++++|+++||||||+ +++|+||+++    |+.+        ++++.++++.++++++|++|+++||.+
T Consensus       153 la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t  227 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGAT  227 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHHSCC
T ss_pred             HHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhccCCc
Confidence            9999999999999999999998 7999999986    3222        356678899999999999999999865

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.5e-42  Score=315.77  Aligned_cols=213  Identities=27%  Similarity=0.416  Sum_probs=178.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ++|||+|||+ |+||+++++.|+..++++||+|+|+++.  ++.++|+.|.... ...+ +. .+++ ++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~-i~-~~~~-~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMS-LY-AGDY-SDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEE-EC---CG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeE-EE-ECCH-HHhCCCCEEEEc
Confidence            3579999998 9999999999999999999999999873  6678999887432 1222 22 2454 789999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~  200 (270)
                      +|.++++|++|.|++.+|+++++++++.+.+++|+++++++|||++    ++++++++.++||++|+||+ |.||+.|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~----~~~~~~~k~s~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH----HHHHHHHHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHH----HHHHHHHHHcCCCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999    67888888889999999999 999999999


Q ss_pred             HHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC--------ChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL--------TPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~--------~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +++|+++|+++++|+++||||||+ +++|+||+++    |+.++        ++++++++.++++++|++|+++||.+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t  234 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGAT  234 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCCCcc
Confidence            999999999999999999999988 7999999986    55443        23446789999999999999998765

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=1.1e-42  Score=316.86  Aligned_cols=208  Identities=28%  Similarity=0.493  Sum_probs=185.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC--cceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~--~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ||+|||| |.||+++++.++..++ +||+|+|+++.  ++.++|+.|....  ...+ +..|+|+ ++++|||+||+++|
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIR-ISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCC-EEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeE-EEECCCH-HHhCCCCEEEEeCC
Confidence            7999998 9999999999998898 89999999874  5677888875321  1211 3445677 78999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .++++|++|.+++.+|+++++++++.+++++|+++++++|||+|    ++++++++.+++|++|++|+ |.||+.|++++
T Consensus        77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~~~~p~~rviG~gt~LD~~R~~~~  152 (308)
T 2d4a_B           77 IGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYY  152 (308)
T ss_dssp             CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHhcCCChhhEEEecccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999    67888889899999999999 99999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHhhcC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVEVIR  264 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~~k~  264 (270)
                      +|+++|+++++|+++||||||+ +++|+||+++    |+.+ +++++++++.++++++|++|+++||
T Consensus       153 la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg  218 (308)
T 2d4a_B          153 ISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRG  218 (308)
T ss_dssp             HHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred             HHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhCCC
Confidence            9999999999999999999997 7999999986    4433 4677789999999999999999987

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=2.8e-42  Score=315.32  Aligned_cols=214  Identities=26%  Similarity=0.406  Sum_probs=186.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC--cceeeeeccCCHHHHhCCCCEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~--~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      .++|||+|||+ |.||++++..|+.+++++||+|+|+++.  ++.++|+.|....  ..+. +.. ++ .++++|||+||
T Consensus         4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-v~~-~~-~~a~~~aDvVv   79 (317)
T 3d0o_A            4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVR-VKA-GE-YSDCHDADLVV   79 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCE-EEE-CC-GGGGTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeE-EEe-CC-HHHhCCCCEEE
Confidence            35689999998 9999999999999898889999999863  4567888875322  1222 222 34 58899999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHH
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r  198 (270)
                      +++|.++++|++|.+++.+|+++++++++.+.+++|+++++++|||++    ++++++++.++||++|+||+ |.||+.|
T Consensus        80 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~----~~t~~~~k~~~~p~~rviG~gt~lD~~r  155 (317)
T 3d0o_A           80 ICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSAR  155 (317)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHH----HHHHHHHHHhCCCHHHEEecCccccHHH
Confidence            999999999999999999999999999999999999999999999999    68888899999999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +++++|+++|+++++|+++||||||+ +++|+||+++    |+.+      ++++.++++.++++++|++|+++||.+
T Consensus       156 ~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~  232 (317)
T 3d0o_A          156 FRLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGAT  232 (317)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHHSCC
T ss_pred             HHHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCCCCc
Confidence            99999999999999999999999998 7999999986    3221      445567899999999999999999765

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=7e-42  Score=310.78  Aligned_cols=211  Identities=25%  Similarity=0.371  Sum_probs=186.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC--CCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~--~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      |||+||||+|+||++++..|+.+++..|++|+|+  ++.  ++.++|+.|.... .... +.. ++ .++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~-v~~-~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTR-VRQ-GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCE-EEE-CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcE-EEe-CC-HHHhCCCCEEEEc
Confidence            7999999779999999999999998889999999  653  4557888876321 1222 222 35 4789999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~  200 (270)
                      +|.++++|++|.+++..|+++++++++.+++++|+++++++|||+|    ++++++++.++||++|++|+ |.||+.|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~----~~~~~~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHH----HHHHHHHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHH----HHHHHHHHHcCCCHHHeeecccchhHHHHH
Confidence            9999999999999999999999999999999999999999999999    68888999999999999999 999999999


Q ss_pred             HHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC-ChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL-TPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~-~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      +++|+++|+++++|+++||||||+ +++|+||++.    |  ++ ++++++++.++++++|++|+++||.+.
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p--~~~~~~~~~~~~~~v~~~g~eii~~kg~~~  222 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTD--PEFSGDEKEQLLGDLQESAMDVIERKGATE  222 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBC--CCCCHHHHHHHHHHHHHHHHHHHTTTSSCC
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcC--ccCCHHHHHHHHHHHHHHhHHHHhcCCChH
Confidence            999999999999999999999998 6999999986    6  44 777899999999999999999987643

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=2.1e-41  Score=308.48  Aligned_cols=211  Identities=27%  Similarity=0.513  Sum_probs=178.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC--cceeeeeccCCHHHHhCCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~--~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      .|||+|||+ |.||++++..++..|+++ |+|+|+++.  ++.++|+.+....  ...+ +..++|+ +++++||+||++
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-i~~t~d~-~a~~~aD~Vi~a   77 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVR-VTGTNNY-ADTANSDVIVVT   77 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCC-EEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeE-EEECCCH-HHHCCCCEEEEc
Confidence            369999998 999999999999999764 999999874  4567788875311  1111 3445788 889999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~  200 (270)
                      +|.|+++|++|.+++.+|+++++++++.+++++|+++++++|||++    ++++++++.+++|++|++|+ |.||+.|++
T Consensus        78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~----~~t~~~~~~~~~~~~rviG~gt~LD~~r~~  153 (309)
T 1ur5_A           78 SGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYR  153 (309)
T ss_dssp             CCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchH----HHHHHHHHHcCCCHHHEEECCcchHHHHHH
Confidence            9999999999999999999999999999999999999999999999    57888888899999999999 999999999


Q ss_pred             HHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHh--hcCC
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVE--VIRG  265 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~--~k~~  265 (270)
                      +++|+++|+++++|+++||||||+ +++|+||+++    |+.+ +++++++++.++++++|++|++  +||.
T Consensus       154 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~~~kgs  224 (309)
T 1ur5_A          154 TFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS  224 (309)
T ss_dssp             HHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHHSSCC
T ss_pred             HHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhhccCCC
Confidence            999999999999999999999997 7999999986    5544 4677899999999999999999  5653

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=3.8e-41  Score=307.59  Aligned_cols=213  Identities=25%  Similarity=0.401  Sum_probs=186.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCc--ceeeeeccCCHHHHhCCCCEEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNA--VVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~--~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      +++||+|||+ |.||+++++.++..+++++|+|+|+++.  ++.++|+.|.....  ..+ +. ++++ ++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~-i~-~~~~-~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVD-IW-HGDY-DDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCE-EE-ECCG-GGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeE-EE-cCcH-HHhCCCCEEEE
Confidence            3469999998 9999999999998898889999999863  45678888864321  222 22 3344 78999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHH
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~  199 (270)
                      ++|.++++|++|.+++.+|.++++++++.+++++|+++++++|||+|    ++++++++.+++|++|++|+ |.||+.|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~----~~~~~~~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchH----HHHHHHHHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999    67888889889999999999 99999999


Q ss_pred             HHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC-------ChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL-------TPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~-------~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      ++++|+++|+++++|+++||||||+ +++|+||+++    |+.++       ++++++++.++++++|++|+++||.+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~  233 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGAT  233 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhccCCc
Confidence            9999999999999999999999998 7999999986    55443       34457899999999999999999765

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=1.7e-41  Score=309.56  Aligned_cols=213  Identities=28%  Similarity=0.480  Sum_probs=182.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC--CCC--hhHHHHhhccccC--cceeeeeccCC-HHHHhCCCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNT--PGVTADISHMDTN--AVVRGFLGQQQ-LEDALTGMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~--~~~--~~~~~dl~~~~~~--~~~~~i~~t~d-~~~al~~ADvVI  119 (270)
                      |||+||||+|+||++++..|+.+++..|++|+|+  ++.  .+.++|+.|....  .... +..++| ++++++|||+||
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~-i~~~~d~l~~al~gaD~Vi   79 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN-IYVESDENLRIIDESDVVI   79 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCE-EEEEETTCGGGGTTCSEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeE-EEeCCcchHHHhCCCCEEE
Confidence            7999999999999999999999998889999999  642  5667888875321  1222 223333 568999999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHH
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r  198 (270)
                      +++|.++++|++|.+++..|+++++++++.+++++ +++++++|||+|    ++++++++.+++|++|++|+ |.||+.|
T Consensus        80 ~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~----~~t~~~~k~~~~p~~rviG~gt~LD~~r  154 (313)
T 1hye_A           80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLR  154 (313)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHH----HHHHHHHHHHCCCTTSEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHH----HHHHHHHHhhCcChhcEEEeCccHHHHH
Confidence            99999999999999999999999999999999999 999999999999    67888888899999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC---ChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL---TPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~---~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +++++|+++|+++++|+++||||||+ +++|+||+++    |+.++   ++++++++.++++++|++|+++||.+
T Consensus       155 ~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kgs~  228 (313)
T 1hye_A          155 FKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS  228 (313)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC-----
T ss_pred             HHHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeecCCCCc
Confidence            99999999999999999999999997 7999999986    55453   56668999999999999999988743

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.5e-40  Score=305.20  Aligned_cols=216  Identities=22%  Similarity=0.318  Sum_probs=186.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCC----CC--hhHHHHhhccccCcceeeeeccCCHHHHhC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVV----NT--PGVTADISHMDTNAVVRGFLGQQQLEDALT  113 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~----~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~  113 (270)
                      ++|||+||||+|+||++++..|+.+++++     +|+|+|++    +.  .+.++||.|.. .+....+..+++++++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~-~~~~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA-FPLLAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT-CTTEEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc-ccccCcEEEecCcHHHhC
Confidence            46899999988999999999999988763     99999998    42  46788999853 122334555678889999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeeee
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~s-g~p~~kviG~  191 (270)
                      |||+||+++|.++++|++|.+++.+|+++++++++.+++++ |+++++++|||+|    ++++++++.+ |||++|++|.
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~----~~t~~~~~~~~~~p~~~v~g~  158 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPAN----TNAYIAMKSAPSLPAKNFTAM  158 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEEC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchH----HHHHHHHHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999997 9999999999999    6778888887 9999999999


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccce-EEEccCCCCceeecccccc----CCCC-CChhH--HHHHHHHHHhhHHHHHhhc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVK----PSCS-LTPTE--IDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~--~~~i~~~v~~~~~~i~~~k  263 (270)
                      |.||+.|+++++|+++|+++++|++ +||||||+ +++|+||+++    |+.+ ++.++  .++|.++++++|++|+++|
T Consensus       159 t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k  237 (329)
T 1b8p_A          159 LRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR  237 (329)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred             ecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999985 78999997 7999999997    3322 22233  3789999999999999999


Q ss_pred             CCC
Q 024248          264 RGN  266 (270)
Q Consensus       264 ~~~  266 (270)
                      |++
T Consensus       238 g~~  240 (329)
T 1b8p_A          238 GVS  240 (329)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            754

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=1.4e-40  Score=302.35  Aligned_cols=203  Identities=20%  Similarity=0.274  Sum_probs=174.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-ChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      .+||+|||| |.+|+.+++.++.++++++|+|+|+++ ..+.++|+.+.. .+.+   ..++|+ ++++|||+||+++|.
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~-~~~i---~~t~d~-~~l~~aD~Vi~aag~   87 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN-LPNV---EISKDL-SASAHSKVVIFTVNS   87 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT-CTTE---EEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc-CCCe---EEeCCH-HHHCCCCEEEEcCCC
Confidence            369999998 999999999999999999999999987 356678888742 2333   335688 889999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFV  203 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~l  203 (270)
                      + ++|++|.|++.+|+++++++++.++++||+++++++|||++    ++++++++.++||++|++|+ |.||+.|+++++
T Consensus        88 ~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~----~~t~~~~~~~~~p~~rviG~gt~Ld~~R~~~~l  162 (303)
T 2i6t_A           88 L-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE----IMTYVTWKLSTFPANRVIGIGCNLDSQRLQYII  162 (303)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHH
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHH----HHHHHHHHhcCCCHHHeeCCCCCchHHHHHHHH
Confidence            6 78999999999999999999999999999999999999999    78999999999999999999 999999999999


Q ss_pred             HHHhCCCCCccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       204 A~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      |+++|+++++|+++||||||+ +++|+||+..+   +   ..+++.++++++|++|+++||.+
T Consensus       163 a~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~~kGst  218 (303)
T 2i6t_A          163 TNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQEE---V---VSHTSQVQLSNRAMELLRVKGQR  218 (303)
T ss_dssp             HHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSSSCCCC
T ss_pred             HHHcCCChHHeEEEEecCCCC-Ccccccccccc---c---cHHHHHHHHHHHHHHHHHccCch
Confidence            999999999999999999997 69999999632   2   22568888999999999988743

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=1.4e-39  Score=298.02  Aligned_cols=213  Identities=28%  Similarity=0.515  Sum_probs=183.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .|||+|||| |.+|++++..|+..|+++ |+|+|+++.  .+...|+.+.... .....+..++|+ +++++||+||+++
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            469999998 999999999999999874 999999875  4456677764211 111113456788 8899999999999


Q ss_pred             CCCCCCCCc-----hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhH
Q 024248          123 GVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDV  196 (270)
Q Consensus       123 g~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt  196 (270)
                      |.|+++|++     |.|++.+|+++++++++.+++++|+++++++|||++    ++++++++.++||++|++|+ |.||+
T Consensus        81 g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~----~~t~~~~~~~g~~~~rviG~gt~ld~  156 (322)
T 1t2d_A           81 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDT  156 (322)
T ss_dssp             SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECCHHHHH
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChH----HHHHHHHHhcCCChHHEEeccCcccH
Confidence            999999998     999999999999999999999999999999999999    56788888889999999999 79999


Q ss_pred             HHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          197 VRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       197 ~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +|+++++|+++|+++++|+++||||||+ +++|+||++.    |+.+      +++++++++.++++++|++|++.||.+
T Consensus       157 ~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kgs~  235 (322)
T 1t2d_A          157 SRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASP  235 (322)
T ss_dssp             HHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhccCch
Confidence            9999999999999999999999999997 7999999975    3222      456668899999999999999998743

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=1.6e-39  Score=298.64  Aligned_cols=214  Identities=30%  Similarity=0.539  Sum_probs=183.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ++|||+|||| |.+|++++..|+..|++ +|+|+|++++  .+.+.|+.+.... .....+..|+|+++++++||+||++
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a   85 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVT   85 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEc
Confidence            4579999998 99999999999998886 4999999875  3344666654211 1111244568998799999999999


Q ss_pred             CCCCCCCCC-----chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhh
Q 024248          122 AGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLD  195 (270)
Q Consensus       122 ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ld  195 (270)
                      +|.|+++|+     +|.+++.+|+++++++++.+++++|+++++++|||++    ++++++++.++||++|++|+ |.||
T Consensus        86 ~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~----~~t~~~~~~~~~~~~rviG~gt~LD  161 (331)
T 1pzg_A           86 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLD  161 (331)
T ss_dssp             CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHH
T ss_pred             cCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchH----HHHHHHHHhcCCChhcEEeccchHH
Confidence            999999999     8999999999999999999999999999999999999    57888888889999999999 7999


Q ss_pred             HHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHh--hc
Q 024248          196 VVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVE--VI  263 (270)
Q Consensus       196 t~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~--~k  263 (270)
                      +.|+++++|+++|+++++|+++|||+||+ +++|+||+++    |+.+      +++++++++.++++.+|++|++  +|
T Consensus       162 ~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~~~k  240 (331)
T 1pzg_A          162 SGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFLGQ  240 (331)
T ss_dssp             HHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHhhcC
Confidence            99999999999999999999999999997 7999999986    3322      4566678899999999999999  66


Q ss_pred             CC
Q 024248          264 RG  265 (270)
Q Consensus       264 ~~  265 (270)
                      |.
T Consensus       241 gs  242 (331)
T 1pzg_A          241 GS  242 (331)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=2.1e-39  Score=297.57  Aligned_cols=213  Identities=33%  Similarity=0.570  Sum_probs=182.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ++|||+|||| |.+|++++..|+..|++ +|+|+|++++  .+.++|+.+.... .....+..++|+ +++++||+||++
T Consensus        13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~a   89 (328)
T 2hjr_A           13 MRKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIIT   89 (328)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEc
Confidence            4579999998 99999999999999986 4999999875  3445666654211 111124456788 889999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~  200 (270)
                      +|.|+++|++|.|++.+|+++++++++.+.+++|+++++++|||++    ++++++++.+|||++|++|+ |.||++|++
T Consensus        90 vg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~----~~t~~~~~~~~~~~~rviG~~t~Ld~~R~~  165 (328)
T 2hjr_A           90 AGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFR  165 (328)
T ss_dssp             CSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEESCHHHHHHHHH
T ss_pred             CCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHHHhcCCChhhEEEeCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    57888888899999999999 599999999


Q ss_pred             HHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHh--hcCC
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVE--VIRG  265 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~--~k~~  265 (270)
                      +++|+++|+++++|+++||||||+ +++|+||+++    |+.+      +++++++++.++++++|++|++  +||.
T Consensus       166 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~~~gs  241 (328)
T 2hjr_A          166 CNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGS  241 (328)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHSSCC
T ss_pred             HHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhhCCCc
Confidence            999999999999999999999997 7999999985    3322      4566778899999999999999  4543

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=4.9e-39  Score=292.12  Aligned_cols=209  Identities=25%  Similarity=0.379  Sum_probs=159.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||+ |.+|++++..|+..|++++|+|+|+++.  .+.++|+.+.... ...+ +.. +++ +++++||+||++++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~-i~~-~~~-~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTR-VWH-GGH-SELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCE-EEE-ECG-GGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeE-EEE-CCH-HHhCCCCEEEEcCC
Confidence            69999998 9999999999999999899999999864  4567788775421 1122 222 465 78999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .++++|++|.|++.+|+++++++++.+++++|+++++++|||++    ++++++++.+  |++|++|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~----~~~~~~~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD----LLTDLATQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHH----HHHHHHHHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchH----HHHHHHHHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999    5677777775  99999999 99999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC--------CChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS--------LTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~--------~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +|+++|+++.+|+++||||||+ +++|+||+++    |+.+        ++++.++++.++++++|++|+++||.+
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~kg~t  225 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRAT  225 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC-----------C
T ss_pred             HHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            9999999999999999999988 7999999986    3322        356678899999999999999998765

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=7.8e-38  Score=284.88  Aligned_cols=212  Identities=35%  Similarity=0.576  Sum_probs=181.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhcccc-CcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~-~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||+ |.+|++++..|+..++..+|+++|+++.  .+..+|+.+... ......+..++|+++ +++||+||++++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~   78 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAG   78 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCC
Confidence            79999998 9999999999998755559999999875  344456665421 001112344578854 999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .|+++|++|.|++.+|+++++++++.+++++|+++++++|||++    .+++++++.+++|++|++|+ |.||+.|++++
T Consensus        79 ~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~----~~~~~~~~~~~~~~~rviG~gt~ld~~r~~~~  154 (310)
T 1guz_A           79 LPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSF  154 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHH----HHHHHHHHHHCSCGGGEEEECHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchH----HHHHHHHHhcCCChHHEEECCCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    56777888889999999999 99999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHh--hcCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVE--VIRG  265 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~--~k~~  265 (270)
                      +|+.+|+++.+|+++||||||+ +++|+||+++    |+.+ +++++++++.++++++|++|++  +||.
T Consensus       155 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~~kgs  223 (310)
T 1guz_A          155 IAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQGS  223 (310)
T ss_dssp             HHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHHSSSC
T ss_pred             HHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhhcCCCC
Confidence            9999999999999999999996 8999999986    4433 4677789999999999999999  5653

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=9.4e-36  Score=272.13  Aligned_cols=211  Identities=28%  Similarity=0.511  Sum_probs=179.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||+ |.+|++++..|+..|+.++|+++|+++.  .+...++.+.... .... +..+ |+ +++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~-i~~~-d~-~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRAN-IYAG-DY-ADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCE-EEEC-CG-GGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcE-EEeC-CH-HHhCCCCEEEEccC
Confidence            79999998 9999999999999888889999999863  3334455543211 1111 2223 65 67999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~~~  202 (270)
                      .+++++++|.|++.+|+++++++++.+++++|+++++++|||++    ++++++++.++||++|++|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~----~~~~~~~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHH----HHHHHHHHHhCCChhhEEeeCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    56777788888999999999 79999999999


Q ss_pred             HHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-------CChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-------LTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       203 lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-------~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +|+.+|+++.+++++||||||+ +++|+||+++    |+.+       ++++.++++.++++++|++|+++||.+
T Consensus       153 la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~  226 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKGAT  226 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccCCch
Confidence            9999999999999999999988 6999999986    3211       355667899999999999999998764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.2e-34  Score=263.33  Aligned_cols=211  Identities=21%  Similarity=0.342  Sum_probs=174.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC--cceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~--~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|||+ |.+|+.++..|+..|+..+|+++|+++.  .+...++.+....  .... +. ++|+ +++++||+||+++
T Consensus         2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~d~-~~~~~aDvViiav   77 (309)
T 1hyh_A            2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGN-IV-INDW-AALADADVVISTL   77 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCE-EE-ESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeE-EE-eCCH-HHhCCCCEEEEec
Confidence            69999997 9999999999998885559999999863  3344455543211  1122 11 3577 7899999999999


Q ss_pred             CCCCC----CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHH
Q 024248          123 GVPRK----PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV  197 (270)
Q Consensus       123 g~~~~----~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~  197 (270)
                      +.+++    +|++|.+++.+|+++++++++.+.+++|+++++++|||++    ++++++++.+++|++|++|+ |.+|+.
T Consensus        78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~----~~~~~~~~~~~~~~~rvig~gt~ld~~  153 (309)
T 1hyh_A           78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTA  153 (309)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHH
T ss_pred             CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHH----HHHHHHHHhcCCCHHHEeecCccchHH
Confidence            99887    8999999999999999999999999999999999999999    67888888889999999999 999999


Q ss_pred             HHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC---CChhHHHHHHHHHHhhHHHHHhhcCCC
Q 024248          198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS---LTPTEIDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       198 r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~---~~~~~~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      |+++.+++.+++++.+++++++|+||+ +++|+||++.    |+.+   ++++.|+++.++++++|++|++.||.+
T Consensus       154 r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~~  228 (309)
T 1hyh_A          154 RMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGKGYT  228 (309)
T ss_dssp             HHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhccCCc
Confidence            999999999999999999999999987 7999999985    4444   356678999999999999999999754

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=2.1e-33  Score=256.97  Aligned_cols=216  Identities=24%  Similarity=0.402  Sum_probs=180.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCc-----cEEEEEeCCCC----hhHHHHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVNT----PGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~-----~eV~LvD~~~~----~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      ++|||+|+||+||||++++..|+.+|+.     .+|+++|+++.    .+..+|+.|... +.+..+..+.+++++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~-~~~~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccc-cccCCeEeccChHHHhCCC
Confidence            4589999999999999999999988875     39999999742    345678876521 2223344456778899999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeeeech
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGVTM  193 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~s-g~p~~kviG~t~  193 (270)
                      |+||++||.++.++++|.+++..|+.+++++++.+++++ |+++++++|||++    .+++..++.+ ++|+.+++|.|+
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~----~~~~~~~~~~~~~~p~~~yg~tk  157 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN----TNALIAYKNAPGLNPRNFTAMTR  157 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEECCH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh----hhHHHHHHHcCCCChhheeccch
Confidence            999999999988888999999999999999999999997 9999999999998    3555556666 789999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCccc-eEEEccCCCCceeecccccc----CCCCCChhH--HHHHHHHHHhhHHHHHhhcCCC
Q 024248          194 LDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVK----PSCSLTPTE--IDYLTDRIQNGGTEVVEVIRGN  266 (270)
Q Consensus       194 ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~~~~vp~~S~~~----p~~~~~~~~--~~~i~~~v~~~~~~i~~~k~~~  266 (270)
                      +|+.|+++.+++.+|+++..++ ++|||+||+ +++|+|+++.    |+..+.+++  +++|.++++++|++|++.||++
T Consensus       158 l~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~~  236 (327)
T 1y7t_A          158 LDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQARGAS  236 (327)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHccCCC
Confidence            9999999999999999999998 589999997 7999999885    544442223  4789999999999999999754

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=2.1e-33  Score=256.11  Aligned_cols=210  Identities=31%  Similarity=0.540  Sum_probs=177.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ++|||+|||+ |.+|+.++..|+..|+. +|+|+|++++  .+..+|+.+.... .....+..++|+ +++++||+||++
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~a   79 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIIT   79 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            3579999998 99999999999998875 6999999875  2334555543210 001113345688 789999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~~  200 (270)
                      +|.|+++|++|.|++.+|.++++++++.+++++|+++++++|||++    ++++.+++.+++|++|++|+ |.+|+.|++
T Consensus        80 vg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~----~~~~~~~~~~~~~~~rviG~~t~ld~~r~~  155 (317)
T 2ewd_A           80 ASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFR  155 (317)
T ss_dssp             CCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHCCCGGGEEESCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHH----HHHHHHHHhhCCCHHHEEeccCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    56777788889999999999 699999999


Q ss_pred             HHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC------CChhHHHHHHHHHHhhHHHHHhh
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS------LTPTEIDYLTDRIQNGGTEVVEV  262 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~------~~~~~~~~i~~~v~~~~~~i~~~  262 (270)
                      +.+|+.+|+++.++.++|+|+||+ +++|+||.++    |+.+      ++.++++++.+.++.+++++++.
T Consensus       156 ~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~  226 (317)
T 2ewd_A          156 TFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADN  226 (317)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHh
Confidence            999999999999999999999997 7999999984    2211      46777889999999999999994

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.97  E-value=1.5e-29  Score=229.82  Aligned_cols=214  Identities=25%  Similarity=0.419  Sum_probs=177.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccC-cceeeeeccCCHHHHhCCCCEEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~-~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .++|||+|||+ |.+|+.++..|+..|++++|+++|+++.  .+.+.|+.+.... .... +..++++ +++++||+||+
T Consensus         5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~-~~~~~aD~Vii   81 (319)
T 1lld_A            5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVS-IDGSDDP-EICRDADMVVI   81 (319)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCE-EEEESCG-GGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeE-EEeCCCH-HHhCCCCEEEE
Confidence            34589999998 9999999999999998889999999853  2335565554221 1111 2334465 68999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-chhhHHHH
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t~ldt~r~  199 (270)
                      +++.++++|++|.+++.+|+++++++++.+++++|++++++++||++    ..++++++.+++|+++++|. |.+++.|+
T Consensus        82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~----~~~~~~~~~~~~~~~~vig~~~~l~~~r~  157 (319)
T 1lld_A           82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARL  157 (319)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHTCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchH----HHHHHHHHhcCCCHHHEeeccccHhHHHH
Confidence            99999999999999999999999999999999999999999999999    56666677778999999998 89999999


Q ss_pred             HHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC---------ChhHHHHHHHHHHhhHHHHHhhcCC
Q 024248          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL---------TPTEIDYLTDRIQNGGTEVVEVIRG  265 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~---------~~~~~~~i~~~v~~~~~~i~~~k~~  265 (270)
                      +..+++.+++++.+++.+++|+||+ +++|+||++.    |+..+         +++.++++.+++++++++|++.||.
T Consensus       158 ~~~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~G~  235 (319)
T 1lld_A          158 RFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGA  235 (319)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred             HHHHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCCCC
Confidence            9999999999999999999999988 6899999874    33222         2334788999999999999998874

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=99.96  E-value=9.6e-30  Score=240.00  Aligned_cols=177  Identities=15%  Similarity=0.162  Sum_probs=142.1

Q ss_pred             CCeEEEEcCCCchHHHH--HHHHHh--CCC-ccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPL--AMLMKI--NPL-VSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~l--a~~l~~--~g~-~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      +|||+|||| |.+ .+.  +..|+.  .++ ++||+|+|+++.+. .+.|+.+...... ..+..++|++++++|||+||
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~-~~v~~t~d~~~al~~AD~Vi   78 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDR-FKVLISDTFEGAVVDAKYVI   78 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTS-SEEEECSSHHHHHTTCSEEE
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCC-eEEEEeCCHHHHhCCCCEEE
Confidence            579999998 876 333  233454  676 78999999987422 2445544221111 22455779889999999999


Q ss_pred             EcCCCCCCCCCchhh--------------------hHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          120 IPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       120 i~ag~~~~~g~~r~~--------------------~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                      +++|.+++++++|.+                    +..+|+++++++++.|+++| ++|+|++|||++    ++|+++++
T Consensus        79 itagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvd----i~t~a~~k  153 (417)
T 1up7_A           79 FQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSG----HITEFVRN  153 (417)
T ss_dssp             ECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHH----HHHHHHHH
T ss_pred             EcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHH----HHHHHHHH
Confidence            999998877766632                    35899999999999999999 999999999999    79999998


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc-----------cCCCCceeeccccc
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-----------GHAGVTILPLLSQV  234 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G-----------~hg~~~~vp~~S~~  234 (270)
                      .+  |++|+||+|... .|+++.+|+.+|+++++|+++|+|           +||+ +++|.||..
T Consensus       154 ~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~  215 (417)
T 1up7_A          154 YL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFEN  215 (417)
T ss_dssp             TT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHH
T ss_pred             hC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHH
Confidence            75  888999997543 499999999999999999999999           9998 689999985

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=99.96  E-value=6.2e-30  Score=244.55  Aligned_cols=202  Identities=20%  Similarity=0.271  Sum_probs=145.6

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCeEEEEcCCCch-HHHHHHHHHhC--CC-ccEEEEEeCCCChhH-HHHhhc
Q 024248           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVNTPGV-TADISH   92 (270)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~V-Gs~la~~l~~~--g~-~~eV~LvD~~~~~~~-~~dl~~   92 (270)
                      |-|.+|+..-.+--.|+..-     .+++|||+|||| |.+ |..++..|+.+  ++ ..||+|+|++++... ..|+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~m-----~m~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~   78 (472)
T 1u8x_X            5 HHHSSGVDLGTENLYFQSNM-----KKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACD   78 (472)
T ss_dssp             --------------------------CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHH
T ss_pred             cccccccccCccceeecccc-----ccCCCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            66777777644333332210     123569999998 888 55577677776  67 779999999864221 234433


Q ss_pred             cc---cCcceeeeeccCCHHHHhCCCCEEEEcCCCCCCCCCch--------------------hhhHHhhHHHHHHHHHH
Q 024248           93 MD---TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTR--------------------DDLFNINAGIVKTLCEG  149 (270)
Q Consensus        93 ~~---~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~~~g~~r--------------------~~~~~~N~~i~~~i~~~  149 (270)
                      ..   ..... .+..++|++++++|||+||+++|+++.++++|                    .+++.+|+++++++++.
T Consensus        79 ~~l~~~~~~~-~I~~t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~  157 (472)
T 1u8x_X           79 VFIREKAPDI-EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDY  157 (472)
T ss_dssp             HHHHHHCTTS-EEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCC-EEEEECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHH
Confidence            21   01111 24457799899999999999999987766666                    44588999999999999


Q ss_pred             HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCC-CccceEEEc--------
Q 024248          150 IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVG--------  220 (270)
Q Consensus       150 i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~-~~v~~~V~G--------  220 (270)
                      |+++||++|+|++|||++    ++|+++++.+  |+.||||+|... .|+++.+|+.+|+++ ++|+++|+|        
T Consensus       158 i~~~~P~A~ii~~TNPvd----i~T~~~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~  230 (472)
T 1u8x_X          158 MEKYSPDAWMLNYSNPAA----IVAEATRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWT  230 (472)
T ss_dssp             HHHHCTTCEEEECCSCHH----HHHHHHHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEE
T ss_pred             HHHHCCCeEEEEeCCcHH----HHHHHHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhhee
Confidence            999999999999999999    7899999885  888999998554 499999999999998 999999999        


Q ss_pred             ---c-CCCCceeeccccc
Q 024248          221 ---G-HAGVTILPLLSQV  234 (270)
Q Consensus       221 ---~-hg~~~~vp~~S~~  234 (270)
                         + ||+ +++|.||..
T Consensus       231 ~~~~~hG~-d~~p~~~~~  247 (472)
T 1u8x_X          231 SIQDQEGN-DLMPKLKEH  247 (472)
T ss_dssp             EEEETTCC-BCHHHHHHH
T ss_pred             eeEeCCCC-EehHhHHHH
Confidence               8 998 689999973

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=99.96  E-value=2.6e-29  Score=239.14  Aligned_cols=179  Identities=17%  Similarity=0.236  Sum_probs=145.8

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHh--CCC-ccEEEEEeCCC--ChhH-HHHhhccc---cCcceeeeeccCCHHHHhCCC
Q 024248           46 GFKVAVLGAAGGI-GQPLAMLMKI--NPL-VSVLHLYDVVN--TPGV-TADISHMD---TNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~V-Gs~la~~l~~--~g~-~~eV~LvD~~~--~~~~-~~dl~~~~---~~~~~~~i~~t~d~~~al~~A  115 (270)
                      +|||+|||| |.+ |..++..|+.  .++ .+||+|+|+++  .+.. ..|+.+..   .....+ +..|+|++++++||
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~-i~~t~D~~eal~gA   84 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIE-IHLTLDRRRALDGA   84 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCE-EEEESCHHHHHTTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcE-EEEeCCHHHHhCCC
Confidence            579999998 888 7777666766  566 77999999987  5322 22333211   111222 44567988999999


Q ss_pred             CEEEEcCCCCCCCCCchhh--------------------hHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHH
Q 024248          116 DIVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~--------------------~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~  175 (270)
                      |+||+++|.+++++++|++                    ++.+|+++++++++.|+++||++|+|++|||++    ++|+
T Consensus        85 D~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvd----ivT~  160 (450)
T 1s6y_A           85 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MVTE  160 (450)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHH
T ss_pred             CEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HHHH
Confidence            9999999998877776653                    478999999999999999999999999999999    7999


Q ss_pred             HHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc-----------cCCCCceeeccccc
Q 024248          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-----------GHAGVTILPLLSQV  234 (270)
Q Consensus       176 ~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G-----------~hg~~~~vp~~S~~  234 (270)
                      ++++.+  |++||||+|... .|+++.+|+.+|+++++|+++|+|           +||+ +++|.||..
T Consensus       161 a~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~  226 (450)
T 1s6y_A          161 AVLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDL  226 (450)
T ss_dssp             HHHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHH
T ss_pred             HHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHH
Confidence            999985  888999998655 499999999999999999999999           9998 689999873

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.92  E-value=1.1e-24  Score=208.48  Aligned_cols=168  Identities=24%  Similarity=0.236  Sum_probs=126.0

Q ss_pred             CCCeEEEEcCCCchHHHH--HHHHHhC-CC-ccEEEEEeCCCChhH-HHHhhccc--cCcceeeeeccCCHHHHhCCCCE
Q 024248           45 PGFKVAVLGAAGGIGQPL--AMLMKIN-PL-VSVLHLYDVVNTPGV-TADISHMD--TNAVVRGFLGQQQLEDALTGMDI  117 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~l--a~~l~~~-g~-~~eV~LvD~~~~~~~-~~dl~~~~--~~~~~~~i~~t~d~~~al~~ADv  117 (270)
                      ++|||+|||| |.||.+.  +..|+.. ++ ..+|+|+|++++... ..++.+..  .......+..++|++++++|||+
T Consensus         2 ~~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            2 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCE
Confidence            3579999998 9986554  5566643 33 459999999864221 22222110  01111124557899889999999


Q ss_pred             EEEcCCCC------------CCCCCch--------------hhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHH
Q 024248          118 VIIPAGVP------------RKPGMTR--------------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP  171 (270)
Q Consensus       118 VIi~ag~~------------~~~g~~r--------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~  171 (270)
                      ||+++|++            .++|..+              ..++.+|+++++++++.|+++||+||+|++|||++    
T Consensus        81 VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd----  156 (480)
T 1obb_A           81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF----  156 (480)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH----
T ss_pred             EEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----
Confidence            99999862            2333322              23478999999999999999999999999999999    


Q ss_pred             HHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc-cC
Q 024248          172 IAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GH  222 (270)
Q Consensus       172 i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G-~h  222 (270)
                      ++|+++++   +|+.||||+|.++. ++++++ +.+|+++++|+++|+| ||
T Consensus       157 i~t~~~~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH  203 (480)
T 1obb_A          157 EGTTLVTR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNH  203 (480)
T ss_dssp             HHHHHHHH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETT
T ss_pred             HHHHHHHH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecc
Confidence            78888887   78999999974433 378999 9999999999999999 88

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.91  E-value=8.5e-24  Score=200.76  Aligned_cols=177  Identities=23%  Similarity=0.362  Sum_probs=137.1

Q ss_pred             CCCeEEEEcCCCchH--HHHHHHHHhC-CCccEEEEEeCCCChhH-HHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           45 PGFKVAVLGAAGGIG--QPLAMLMKIN-PLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~G~VG--s~la~~l~~~-g~~~eV~LvD~~~~~~~-~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      ++|||+|||| |.+|  ..++..++.. .+.++|+|+|+++.... ...+.+....... .+..|+|+++|++|||+||+
T Consensus         4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~~~~-~I~~TtD~~eAl~dADfVI~   81 (450)
T 3fef_A            4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRW-RYEAVSTLKKALSAADIVII   81 (450)
T ss_dssp             CCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTTSCE-EEEEESSHHHHHTTCSEEEE
T ss_pred             CCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhccCC-eEEEECCHHHHhcCCCEEEe
Confidence            4579999998 9974  5677666653 23359999999864211 1111111011122 25678899999999999999


Q ss_pred             cCC------------CCCCCCCchh--h--------hHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHH
Q 024248          121 PAG------------VPRKPGMTRD--D--------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (270)
Q Consensus       121 ~ag------------~~~~~g~~r~--~--------~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~  178 (270)
                      +++            .|.++|..+.  |        ...+|+++++++++.|+++||++|+|++|||+|    ++|++++
T Consensus        82 airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvd----i~t~~~~  157 (450)
T 3fef_A           82 SILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMS----VCTRVLY  157 (450)
T ss_dssp             CCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHH
T ss_pred             ccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHH
Confidence            985            4667776543  3        345999999999999999999999999999999    7899888


Q ss_pred             HhCCCCCCCeeeechhhHHHHHHHHHHHh----C---CCCCccceEEEc-cCCCCceeecccccc
Q 024248          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVL----G---LDPREVDVPVVG-GHAGVTILPLLSQVK  235 (270)
Q Consensus       179 ~~sg~p~~kviG~t~ldt~r~~~~lA~~l----~---v~~~~v~~~V~G-~hg~~~~vp~~S~~~  235 (270)
                      +.  +|+.|+||+|+.. .++++.+|+.+    |   +++++++..++| ||     +.+|++++
T Consensus       158 k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH-----~~w~~~~~  214 (450)
T 3fef_A          158 KV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH-----FTWITKAS  214 (450)
T ss_dssp             HH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT-----EEEEEEEE
T ss_pred             HH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC-----eEeEEEEE
Confidence            87  7999999999776 68999999999    5   779999999999 99     57788775

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.89  E-value=3.3e-23  Score=198.45  Aligned_cols=165  Identities=25%  Similarity=0.276  Sum_probs=121.7

Q ss_pred             CeEEEEcCCCchHHHHH--HHHHhC----CCccEEEEEeCCCC--hhHHHHhhcccc--CcceeeeeccCCHHHHhCCCC
Q 024248           47 FKVAVLGAAGGIGQPLA--MLMKIN----PLVSVLHLYDVVNT--PGVTADISHMDT--NAVVRGFLGQQQLEDALTGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la--~~l~~~----g~~~eV~LvD~~~~--~~~~~dl~~~~~--~~~~~~i~~t~d~~~al~~AD  116 (270)
                      |||+|||| |.+|.+..  ..++..    +...+|+|+|+++.  .+...++.+...  ....+ +..|+|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~-i~~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVK-VVKTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCE-EEEESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeE-EEEeCCHHHHhCCCC
Confidence            79999998 99987743  223322    23469999999874  233344444321  12222 456889999999999


Q ss_pred             EEEEcCCCC-------------------CCCCCchhhhH---------------HhhHHHHHHHHHHHhHhCCCCEEEEe
Q 024248          117 IVIIPAGVP-------------------RKPGMTRDDLF---------------NINAGIVKTLCEGIAKCCPKAIVNLI  162 (270)
Q Consensus       117 vVIi~ag~~-------------------~~~g~~r~~~~---------------~~N~~i~~~i~~~i~~~~p~a~viv~  162 (270)
                      |||+++|..                   +++|.+|..+.               .+|++++.++++.|+++||+||+||+
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            999999752                   24454433322               24889999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc-cC
Q 024248          163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GH  222 (270)
Q Consensus       163 sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G-~h  222 (270)
                      |||++    ++|+++++.++   .|++|+|+-...  ...+++.+|+++++|+..+.| ||
T Consensus       159 tNP~~----i~t~a~~~~~~---~k~vGlC~~~~~--~~~~~~~Lg~~~~~v~~~~~GlNH  210 (477)
T 3u95_A          159 ANPVF----EITQAVRRWTG---ANIIGFCHGVAG--VYEVFERLGLDPEEVDWQVAGVNH  210 (477)
T ss_dssp             SSCHH----HHHHHHHHHHC---CCEEEECCGGGH--HHHHHHHTTCCGGGEEEEEEEETT
T ss_pred             cChHH----HHHHHHHHhCC---CCeEEECCCHHH--HHHHHHHhCCCHHHcEEEEeecCC
Confidence            99999    78888888655   589999964433  345677899999999999999 66

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.14  E-value=6.6e-10  Score=99.06  Aligned_cols=165  Identities=16%  Similarity=0.151  Sum_probs=107.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      .|||.|+||+|++|++++..|+.+|+  +|++++++.....   +....  ...-.+. ..+++++++++|+||++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~~--~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDYE--YRVSDYT-LEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CCE--EEECCCC-HHHHHHHTTTCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCceE--EEEcccc-HHHHHHhhcCCCEEEEccccC
Confidence            47999999999999999999999998  9999999743211   21110  0000122 335677889999999999865


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHH
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA  204 (270)
                      ...  +..+.+..|+....++++.+++....- +|++|. .+.....  ...+.+.....+...+|.++....++...++
T Consensus        74 ~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r-~v~~SS~~vyg~~~--~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  148 (311)
T 3m2p_A           74 GSQ--GKISEFHDNEILTQNLYDACYENNISN-IVYASTISAYSDET--SLPWNEKELPLPDLMYGVSKLACEHIGNIYS  148 (311)
T ss_dssp             CSS--SCGGGTHHHHHHHHHHHHHHHHTTCCE-EEEEEEGGGCCCGG--GCSBCTTSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCC--ChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEccHHHhCCCC--CCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence            332  334567889999999999999876443 444442 2211000  0000011112233457778888888888888


Q ss_pred             HHhCCCCCccc-eEEEccCC
Q 024248          205 EVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       205 ~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +..|++..-++ +.++|...
T Consensus       149 ~~~g~~~~ilRp~~v~G~~~  168 (311)
T 3m2p_A          149 RKKGLCIKNLRFAHLYGFNE  168 (311)
T ss_dssp             HHSCCEEEEEEECEEECSCC
T ss_pred             HHcCCCEEEEeeCceeCcCC
Confidence            88898887776 48899654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.09  E-value=1.6e-10  Score=105.14  Aligned_cols=142  Identities=15%  Similarity=0.223  Sum_probs=99.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hhH--H----HHhhcccc-------CcceeeeeccCCHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--T----ADISHMDT-------NAVVRGFLGQQQLED  110 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~--~----~dl~~~~~-------~~~~~~i~~t~d~~~  110 (270)
                      .||+|||| |.+|+.+|..++..|+  +|+|+|+++.   .+.  +    ..+.....       ...+..+..++|+++
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            48999998 9999999999999999  9999999863   111  1    11111100       012233556789999


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      ++++||+||.++              .+|+++.+++...+.++++ ++++  .||.+...   ++++.... . .|+|++
T Consensus        84 a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~---is~ia~~~-~-~p~r~i  142 (319)
T 3ado_A           84 AVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLL---PSKLFTGL-A-HVKQCI  142 (319)
T ss_dssp             HTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSEE--EECCSSCC---HHHHHTTC-T-TGGGEE
T ss_pred             HhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhccee--ehhhhhcc---chhhhhhc-c-CCCcEE
Confidence            999999999985              3568999999999999985 5654  89998874   45554332 2 356776


Q ss_pred             ee-------------------chhhHHHHHHHHHHHhCCCCC
Q 024248          190 GV-------------------TMLDVVRANTFVAEVLGLDPR  212 (270)
Q Consensus       190 G~-------------------t~ldt~r~~~~lA~~l~v~~~  212 (270)
                      |+                   |.-++...-..+++.+|..|-
T Consensus       143 g~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv  184 (319)
T 3ado_A          143 VAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPV  184 (319)
T ss_dssp             EEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EecCCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCccC
Confidence            65                   334555556667788876653

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.08  E-value=6.7e-10  Score=100.27  Aligned_cols=177  Identities=13%  Similarity=0.062  Sum_probs=105.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeee----eccCCHHHHhCC--CCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTG--MDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i----~~t~d~~~al~~--ADvV  118 (270)
                      +.|||.|+||+|++|++++..|+..|..-+|+.+|+.........+........+..+    ....++++++++  +|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V  102 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVI  102 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEE
Confidence            3579999999999999999999998843388999886522111112211111122211    111235566776  9999


Q ss_pred             EEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeeeechhh
Q 024248          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                      |++|+.....  ..+..+++..|+.....+++.+.+.... .+|++|. .+..... -...+.+.....+...+|.++..
T Consensus       103 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~-~~~~~~E~~~~~p~~~Y~~sK~~  180 (346)
T 4egb_A          103 VNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLG-KTGRFTEETPLAPNSPYSSSKAS  180 (346)
T ss_dssp             EECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCC-SSCCBCTTSCCCCCSHHHHHHHH
T ss_pred             EECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCC-cCCCcCCCCCCCCCChhHHHHHH
Confidence            9999864321  1233456789999999999999887543 3444442 1110000 00000011112234557778888


Q ss_pred             HHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          196 VVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       196 t~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ..++...+++..|++..-++ +.|+|...
T Consensus       181 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  209 (346)
T 4egb_A          181 ADMIALAYYKTYQLPVIVTRCSNNYGPYQ  209 (346)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence            88888888888899887776 58999754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.08  E-value=8.4e-10  Score=99.64  Aligned_cols=157  Identities=16%  Similarity=0.186  Sum_probs=104.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh----HHHHhhccccCcceeeeeccCCHHHHhCCCCEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~----~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      .+.|||.|+||+|++|++++..|+.+|+  +|+++|++....    ...|+.+            ..+++++++++|+||
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~Dl~d------------~~~~~~~~~~~d~vi   82 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSGTGGEEVVGSLED------------GQALSDAIMGVSAVL   82 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCSSCCSEEESCTTC------------HHHHHHHHTTCSEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCCCccEEecCcCC------------HHHHHHHHhCCCEEE
Confidence            4457899999999999999999999998  999999975420    0112211            124567889999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCc----HHHHHHHHHHhCCCCCCCeeeechh
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNST----VPIAAEVFKKVGTYDPKRLLGVTML  194 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~----~~i~t~~~~~~sg~p~~kviG~t~l  194 (270)
                      ++|+..........+.+..|+....++++.+.+.... .||++|. -+...    ...+    .+....++...+|.++.
T Consensus        83 h~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~~----~E~~~~~~~~~Y~~sK~  157 (347)
T 4id9_A           83 HLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFLPV----TEDHPLCPNSPYGLTKL  157 (347)
T ss_dssp             ECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSSSB----CTTSCCCCCSHHHHHHH
T ss_pred             ECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCCCc----CCCCCCCCCChHHHHHH
Confidence            9998653322233567889999999999999886543 4444443 11100    0000    11112334455777888


Q ss_pred             hHHHHHHHHHHHhCCCCCccce-EEE
Q 024248          195 DVVRANTFVAEVLGLDPREVDV-PVV  219 (270)
Q Consensus       195 dt~r~~~~lA~~l~v~~~~v~~-~V~  219 (270)
                      ...++...+++..+++..-++. .++
T Consensus       158 ~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          158 LGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHhcCCceEEEccceEe
Confidence            8888888888888888777764 788

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.07  E-value=1.4e-09  Score=96.66  Aligned_cols=169  Identities=18%  Similarity=0.134  Sum_probs=105.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||.|+||+|++|++++..|+.+|+  +|+++|++......  ............+.... +.+++++ |+||++|+.+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~~~~   74 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRRE--FVNPSAELHVRDLKDYS-WGAGIKG-DVVFHFAANPE   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCGG--GSCTTSEEECCCTTSTT-TTTTCCC-SEEEECCSSCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCchh--hcCCCceEEECccccHH-HHhhcCC-CEEEECCCCCC
Confidence            7999999999999999999999998  99999987532111  11110000000011111 4556667 99999998542


Q ss_pred             CC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHH
Q 024248          127 KP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (270)
Q Consensus       127 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~l  203 (270)
                      ..  ..+....+..|+.....+++.+++.... .++++|. -+.....  ...+.+....++...++.++....++...+
T Consensus        75 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~--~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~  151 (312)
T 3ko8_A           75 VRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDAD--VIPTPEEEPYKPISVYGAAKAAGEVMCATY  151 (312)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCC--CCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            11  1234456788999999999999887544 4444442 1110000  000001112334455777888888888888


Q ss_pred             HHHhCCCCCccce-EEEccCCC
Q 024248          204 AEVLGLDPREVDV-PVVGGHAG  224 (270)
Q Consensus       204 A~~l~v~~~~v~~-~V~G~hg~  224 (270)
                      ++.+|++...++. .|+|+...
T Consensus       152 ~~~~g~~~~~lrp~~v~g~~~~  173 (312)
T 3ko8_A          152 ARLFGVRCLAVRYANVVGPRLR  173 (312)
T ss_dssp             HHHHCCEEEEEEECEEECTTCC
T ss_pred             HHHhCCCEEEEeeccccCcCCC
Confidence            9989998877764 89997533

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.06  E-value=1.6e-09  Score=97.32  Aligned_cols=172  Identities=19%  Similarity=0.118  Sum_probs=99.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +.|||.|+||+|++|++++..|+.+|+  +|++++++.....  ++.+.......-.+....+++++++++|+||++++.
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQIQ--RLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCGG--GGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhhh--hhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            347999999999999999999999998  9999999754221  122110000000011112356778999999999986


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCC----CCeeeechhhHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDP----KRLLGVTMLDVVRA  199 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~----~kviG~t~ldt~r~  199 (270)
                      ......+..+++..|+....++++.+.+.... .+|++|.. +.....- .....+..-..+    ...++.++....++
T Consensus        88 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~-~~~~~E~~~~~p~~~~~~~Y~~sK~~~e~~  165 (342)
T 2x4g_A           88 YPSRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGSAYAMPRHPQ-GLPGHEGLFYDSLPSGKSSYVLCKWALDEQ  165 (342)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECCGGGSCCCTT-SSCBCTTCCCSSCCTTSCHHHHHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHhhCcCCC-CCCCCCCCCCCccccccChHHHHHHHHHHH
Confidence            43212234456789999999999999987533 44545432 2100000 000000000111    33466677777777


Q ss_pred             HHHHHHHhCCCCCccc-eEEEccCC
Q 024248          200 NTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       200 ~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ...+++. |++...++ +.++|+..
T Consensus       166 ~~~~~~~-g~~~~ilrp~~v~g~~~  189 (342)
T 2x4g_A          166 AREQARN-GLPVVIGIPGMVLGELD  189 (342)
T ss_dssp             HHHHHHT-TCCEEEEEECEEECSCC
T ss_pred             HHHHhhc-CCcEEEEeCCceECCCC
Confidence            7777766 88777775 48899754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.06  E-value=9e-10  Score=99.61  Aligned_cols=175  Identities=14%  Similarity=0.037  Sum_probs=108.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhcccc---Ccceee----eeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---NAVVRG----FLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~---~~~~~~----i~~t~d~~~al~~A  115 (270)
                      +.|||.|+||+|++|++++..|+.+|+  +|+++++...  .....++.....   ...+..    +....+++++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            356999999999999999999999998  9999999753  111222221100   011111    11122356788999


Q ss_pred             CEEEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          116 DIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       116 DvVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      |+||++|+......  .+..+.+..|+.....+++.+.+.... .+|++|. .+.....  ...+.+..-..+...+|.+
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~--~~~~~E~~~~~p~~~Y~~s  178 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-SFTYAASSSTYGDHP--ALPKVEENIGNPLSPYAVT  178 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCC--CSSBCTTCCCCCCSHHHHH
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEecHHhcCCCC--CCCCccCCCCCCCChhHHH
Confidence            99999998532110  123456788999999999999887544 4444432 1110000  0000011111233456777


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccce-EEEccCCC
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDV-PVVGGHAG  224 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg~  224 (270)
                      +....++...+++..|++..-++. .|+|....
T Consensus       179 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~  211 (351)
T 3ruf_A          179 KYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQD  211 (351)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEEECSEESTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCC
Confidence            888888888888888998888864 89997643

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.01  E-value=2e-09  Score=96.65  Aligned_cols=175  Identities=14%  Similarity=0.059  Sum_probs=106.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC--CccEEEEEeCCCChhHHHHhhccccCcceeee----eccCCHHHHhCCCCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g--~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i----~~t~d~~~al~~ADvV  118 (270)
                      +.|||.|+||+|++|++++..|+.+|  +  +|+++|+.........+........+..+    ....++++++.++|+|
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   79 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDW--EVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGV   79 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCC--EEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEE
Confidence            35899999999999999999998876  6  99999986421111111111001111111    1112345667899999


Q ss_pred             EEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhh
Q 024248          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                      |++||.....  ..+..+++..|+.....+++.+.+......||++|.. +.....  ...+.+....++...++.++..
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~--~~~~~E~~~~~~~~~Y~~sK~~  157 (336)
T 2hun_A           80 VHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDIL--KGSFTENDRLMPSSPYSATKAA  157 (336)
T ss_dssp             EECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCS--SSCBCTTBCCCCCSHHHHHHHH
T ss_pred             EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCC--CCCcCCCCCCCCCCccHHHHHH
Confidence            9999864210  0123456788999999999999987544566666531 110000  0000011123344557777887


Q ss_pred             HHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          196 VVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       196 t~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ..++...+++.+|++...++ +.|+|...
T Consensus       158 ~e~~~~~~~~~~~~~~~ilrp~~v~g~~~  186 (336)
T 2hun_A          158 SDMLVLGWTRTYNLNASITRCTNNYGPYQ  186 (336)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHHhCCCEEEEeeeeeeCcCC
Confidence            88888888888888777775 48888653

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.98  E-value=2.9e-09  Score=95.45  Aligned_cols=173  Identities=16%  Similarity=0.030  Sum_probs=103.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceeee----eccCCHHHHhCC-
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGF----LGQQQLEDALTG-  114 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~i----~~t~d~~~al~~-  114 (270)
                      +.+.|||.|+||+|++|++++..|+..|+  +|+++|++....   ...++..   ...+..+    ....++++++++ 
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~   85 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIKA   85 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHHc
Confidence            45668999999999999999999999998  999999975421   1112211   0111111    111234456665 


Q ss_pred             -CCEEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          115 -MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       115 -ADvVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                       .|+||++|+.....  ..+..+.+..|+.....+++.+.+......|+++|.. +.....  ...+.+.....+...+|
T Consensus        86 ~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~--~~~~~E~~~~~p~~~Y~  163 (335)
T 1rpn_A           86 QPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQ--AERQDENTPFYPRSPYG  163 (335)
T ss_dssp             CCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHH
T ss_pred             CCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCC--CCCCCcccCCCCCChhH
Confidence             59999999864211  1234456788999999999999887543456655532 110000  00000111112234567


Q ss_pred             echhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .++....++...+++.++++..-++ +.++|..
T Consensus       164 ~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~  196 (335)
T 1rpn_A          164 VAKLYGHWITVNYRESFGLHASSGILFNHESPL  196 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCC
Confidence            7777778888888888888776665 4677854

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.96  E-value=3.4e-08  Score=88.64  Aligned_cols=170  Identities=15%  Similarity=0.095  Sum_probs=101.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh----HHHHhhccccCccee-eeeccCCHHHHhCCCCEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~----~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVI  119 (270)
                      +.|||.|+||+||||++++..|+.+|+  +|++++++....    ...++........+. .+....+++++++++|+||
T Consensus         8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vi   85 (338)
T 2rh8_A            8 GKKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVF   85 (338)
T ss_dssp             -CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEE
Confidence            356899999999999999999999998  999887764311    111222110000010 1222345677899999999


Q ss_pred             EcCCCCCCCCCc-hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC---CCC-----------
Q 024248          120 IPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG---TYD-----------  184 (270)
Q Consensus       120 i~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s---g~p-----------  184 (270)
                      ++|+.......+ ..+++..|+....++++.+.+...-..||++|....    +..  .....   .++           
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~----~~~--~~~~~~~~~~~E~~~~~~~~~~  159 (338)
T 2rh8_A           86 HVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAA----VTI--NQLDGTGLVVDEKNWTDIEFLT  159 (338)
T ss_dssp             EESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHH----HHH--HHHTCSCCCCCTTTTTCC----
T ss_pred             EeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHH----eec--CCcCCCCcccChhhccchhhcc
Confidence            998754211111 123678899999999999987642245665553211    000  00000   000           


Q ss_pred             ----CCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          185 ----PKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       185 ----~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                          ....++.++....++...+++..|++...++ +.|+|+.
T Consensus       160 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~  202 (338)
T 2rh8_A          160 SAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSS  202 (338)
T ss_dssp             ---CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCC
T ss_pred             ccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence                1114777777677777777777888877775 5889975

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.95  E-value=8e-09  Score=94.93  Aligned_cols=173  Identities=14%  Similarity=0.077  Sum_probs=105.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.|||.|+||+|++|++++..|+..|+  +|+++|++.......  ..... ..+. .+....+++++++++|+||++|+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~~~v-~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTE--DMFCD-EFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCG--GGTCS-EEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchhh--ccCCc-eEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            446899999999999999999999998  999999975321110  00000 0000 01111235677899999999998


Q ss_pred             CCCCC---CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHH---HHHHHHhC--CCCCCCeeeechh
Q 024248          124 VPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIA---AEVFKKVG--TYDPKRLLGVTML  194 (270)
Q Consensus       124 ~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~---t~~~~~~s--g~p~~kviG~t~l  194 (270)
                      .....   ..+..+++..|+.....+++.+.+.... .||++|.. +.....-.   ...+.+..  ..++...++.++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK~  181 (379)
T 2c5a_A          103 DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKL  181 (379)
T ss_dssp             CCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHH
T ss_pred             ecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhHHHHH
Confidence            64321   1234566788999999999999876433 45545432 21100000   00000000  1123345666777


Q ss_pred             hHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          195 DVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       195 dt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ...++...+++..|++...++ +.++|...
T Consensus       182 ~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~  211 (379)
T 2c5a_A          182 ATEELCKHYNKDFGIECRIGRFHNIYGPFG  211 (379)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCceeCcCC
Confidence            777787778888888877775 48899753

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.94  E-value=2.1e-09  Score=94.31  Aligned_cols=165  Identities=16%  Similarity=0.151  Sum_probs=105.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH--HHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~--~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      ++|.|+||+|++|+.++..|+.+|.  +|++.|+++.....  ......+       +....+++++++++|+||++||.
T Consensus         4 k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~D-------l~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            4 KRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPAGPNEECVQCD-------LADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             EEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCCCTTEEEEECC-------TTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCccccCCCCEEEEcC-------CCCHHHHHHHHcCCCEEEECCCC
Confidence            3699999999999999999999998  99999998642110  0000000       11122456778899999999987


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~l  203 (270)
                      ...  ....+.+..|+.....+++.+.+... ..||++| ..+..... -...+.+....++...++.++.....+.+.+
T Consensus        75 ~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iv~~SS~~~~g~~~-~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~  150 (267)
T 3rft_A           75 SVE--KPFEQILQGNIIGLYNLYEAARAHGQ-PRIVFASSNHTIGYYP-QTERLGPDVPARPDGLYGVSKCFGENLARMY  150 (267)
T ss_dssp             CSC--CCHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEEEEGGGGTTSB-TTSCBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             cCc--CCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEcchHHhCCCC-CCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            422  23456778999999999999987654 3455554 22210000 0000001112334455777777777788888


Q ss_pred             HHHhCCCCCccce-EEEccCCC
Q 024248          204 AEVLGLDPREVDV-PVVGGHAG  224 (270)
Q Consensus       204 A~~l~v~~~~v~~-~V~G~hg~  224 (270)
                      ++.+|++...++. .|+|+.++
T Consensus       151 a~~~g~~~~~vr~~~v~~~~~~  172 (267)
T 3rft_A          151 FDKFGQETALVRIGSCTPEPNN  172 (267)
T ss_dssp             HHHHCCCEEEEEECBCSSSCCS
T ss_pred             HHHhCCeEEEEEeecccCCCCC
Confidence            9898887766654 66665544

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.93  E-value=2.4e-09  Score=97.48  Aligned_cols=170  Identities=15%  Similarity=0.080  Sum_probs=99.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHh--CCCccEEEEEeCCCCh-----------hHHHHhhccccCccee-eeeccCCHH
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTP-----------GVTADISHMDTNAVVR-GFLGQQQLE  109 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~--~g~~~eV~LvD~~~~~-----------~~~~dl~~~~~~~~~~-~i~~t~d~~  109 (270)
                      .+.|||.|+||+|++|++++..|+.  .|+  +|+++|+....           .....+..... ..+. .+....+++
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~   84 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG-EVIAADINNPLDLR   84 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTTCCS-EEEECCTTCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccccCc-eEEECCCCCHHHHH
Confidence            3457999999999999999999999  888  99999986431           00111111000 0000 011112344


Q ss_pred             HH-hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHHHHHHHhCCCCCCC
Q 024248          110 DA-LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       110 ~a-l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      ++ ..++|+||++||.......+..+.+..|+.....+++.+++....  ||++|. .+.....   ..+.+.....+..
T Consensus        85 ~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~SS~~vyg~~~---~~~~E~~~~~p~~  159 (362)
T 3sxp_A           85 RLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYASSAGVYGNTK---APNVVGKNESPEN  159 (362)
T ss_dssp             HHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEEEGGGGCSCC---SSBCTTSCCCCSS
T ss_pred             HhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeCcHHHhCCCC---CCCCCCCCCCCCC
Confidence            55 689999999998543222345567889999999999999876543  554543 1110000   0000111112233


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccce-EEEccCC
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDV-PVVGGHA  223 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg  223 (270)
                      .+|.++....++...+++.  ++...++. .|+|...
T Consensus       160 ~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~  194 (362)
T 3sxp_A          160 VYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPRE  194 (362)
T ss_dssp             HHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTC
T ss_pred             hhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCC
Confidence            4666766666655555444  55556665 8898753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=8.3e-10  Score=93.78  Aligned_cols=160  Identities=12%  Similarity=0.038  Sum_probs=98.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||.|+||+|++|++++..|+.+|+  +|++++++......  +.     ..+..    +....+++++++++|+||+++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   75 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIKI--EN-----EHLKVKKADVSSLDEVCEVCKGADAVISAF   75 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCCC--CC-----TTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccchh--cc-----CceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence            6999999999999999999999998  99999997532110  10     01110    111224667899999999999


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~  201 (270)
                      |....    ..+++..|+.....+++.+.+.... .++++|.. +....+  ....... ...+...++.++....++..
T Consensus        76 ~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~~~~--~~~~~~~-~~~p~~~Y~~sK~~~e~~~~  147 (227)
T 3dhn_A           76 NPGWN----NPDIYDETIKVYLTIIDGVKKAGVN-RFLMVGGAGSLFIAP--GLRLMDS-GEVPENILPGVKALGEFYLN  147 (227)
T ss_dssp             CC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEECCSTTSEEET--TEEGGGT-TCSCGGGHHHHHHHHHHHHH
T ss_pred             cCCCC----ChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeCChhhccCCC--CCccccC-CcchHHHHHHHHHHHHHHHH
Confidence            76522    1235677999999999999886543 45555432 110000  0000011 11223445666666666667


Q ss_pred             HHHHHhCCCCCccc-eEEEccCC
Q 024248          202 FVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       202 ~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      .+++..+++...++ +.++|+..
T Consensus       148 ~~~~~~~~~~~ilrp~~v~g~~~  170 (227)
T 3dhn_A          148 FLMKEKEIDWVFFSPAADMRPGV  170 (227)
T ss_dssp             TGGGCCSSEEEEEECCSEEESCC
T ss_pred             HHhhccCccEEEEeCCcccCCCc
Confidence            77766777766665 47788653

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.93  E-value=6.4e-09  Score=93.45  Aligned_cols=172  Identities=15%  Similarity=0.061  Sum_probs=104.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceee----eeccCCHHHHhC--CCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG----FLGQQQLEDALT--GMD  116 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~----i~~t~d~~~al~--~AD  116 (270)
                      +.|+|.|+||+|++|++++..|+.+|+  +|+++|++...  ....++.... ...+..    +....+++++++  ++|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCc
Confidence            357999999999999999999999998  99999987532  1111221110 001110    111223555666  899


Q ss_pred             EEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeeeech
Q 024248          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (270)
Q Consensus       117 vVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~kviG~t~  193 (270)
                      +||++|+.....  .....+.+..|+.....+++.+++.... .|+++|. .+.....  ...+.+....++...++.++
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~--~~~~~e~~~~~~~~~Y~~sK  157 (341)
T 3enk_A           81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPE--RSPIDETFPLSATNPYGQTK  157 (341)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCS--SSSBCTTSCCBCSSHHHHHH
T ss_pred             EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCC--CCCCCCCCCCCCCChhHHHH
Confidence            999999864210  0123356788999999999999886544 4444442 1110000  00000111123334577787


Q ss_pred             hhHHHHHHHHHHHhC-CCCCccc-eEEEccC
Q 024248          194 LDVVRANTFVAEVLG-LDPREVD-VPVVGGH  222 (270)
Q Consensus       194 ldt~r~~~~lA~~l~-v~~~~v~-~~V~G~h  222 (270)
                      ....++.+.+++.++ ++...++ +.|+|.+
T Consensus       158 ~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~  188 (341)
T 3enk_A          158 LMAEQILRDVEAADPSWRVATLRYFNPVGAH  188 (341)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence            777888888888876 6666665 4889875

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.93  E-value=7.9e-09  Score=92.00  Aligned_cols=168  Identities=15%  Similarity=0.140  Sum_probs=101.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||.|+||+|++|++++..|+.+|.  .|++.++.......  + ........-.+.. .++.++++++|+||++|+.+.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~--~v~~~~~~~~~~~~--~-~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~~~~   75 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNE--IVVIDNLSSGNEEF--V-NEAARLVKADLAA-DDIKDYLKGAEEVWHIAANPD   75 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSC--EEEECCCSSCCGGG--S-CTTEEEECCCTTT-SCCHHHHTTCSEEEECCCCCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEcCCCCChhh--c-CCCcEEEECcCCh-HHHHHHhcCCCEEEECCCCCC
Confidence            4799999999999999999999883  44444333221111  0 0000000000122 356778899999999998542


Q ss_pred             CC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHH
Q 024248          127 KP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (270)
Q Consensus       127 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~l  203 (270)
                      ..  ..+..+.+..|+.....+++.+.+.... .+|++|.. +.....  ...+.+....++...+|.++....++...+
T Consensus        76 ~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~vyg~~~--~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~  152 (313)
T 3ehe_A           76 VRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTSTVYGEAK--VIPTPEDYPTHPISLYGASKLACEALIESY  152 (313)
T ss_dssp             CC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchHHhCcCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            11  1234567789999999999999887543 45555431 110000  000001112233445777888888888889


Q ss_pred             HHHhCCCCCccc-eEEEccCC
Q 024248          204 AEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       204 A~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ++.+|++..-++ +.|+|...
T Consensus       153 ~~~~g~~~~ilRp~~v~G~~~  173 (313)
T 3ehe_A          153 CHTFDMQAWIYRFANVIGRRS  173 (313)
T ss_dssp             HHHTTCEEEEEECSCEESTTC
T ss_pred             HHhcCCCEEEEeeccccCcCC
Confidence            999998877775 48899753

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.92  E-value=9.4e-09  Score=92.32  Aligned_cols=169  Identities=15%  Similarity=0.116  Sum_probs=103.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC---C---CccEEEEEeCCCCh---hHHHHhhccccCcceeee----eccCCHHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN---P---LVSVLHLYDVVNTP---GVTADISHMDTNAVVRGF----LGQQQLEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~---g---~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~~i----~~t~d~~~al~  113 (270)
                      |||.|+||+|++|++++..|+.+   |   +  +|+++|+....   ....++..   ...+..+    ....++++++.
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~   75 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDA---DPRLRFVHGDIRDAGLLARELR   75 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTT---CTTEEEEECCTTCHHHHHHHTT
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhccc---CCCeEEEEcCCCCHHHHHHHhc
Confidence            79999999999999999999986   6   6  99999986421   11112211   1111111    11123556778


Q ss_pred             CCCEEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          114 GMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      ++|+||++|+.....  ..+..+++..|+.....+++.+.+.... .|+++|.. +.....  ...+.+....++...++
T Consensus        76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~--~~~~~E~~~~~~~~~Y~  152 (337)
T 1r6d_A           76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSID--SGSWTESSPLEPNSPYA  152 (337)
T ss_dssp             TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCS--SSCBCTTSCCCCCSHHH
T ss_pred             CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCC--CCCCCCCCCCCCCCchH
Confidence            999999999854210  0123456788999999999999886433 45555421 110000  00000111223345577


Q ss_pred             echhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      .++....++...+++.+|++..-++ +.|+|...
T Consensus       153 ~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~  186 (337)
T 1r6d_A          153 ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQ  186 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCC
Confidence            7777777888888888898877776 48888653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.92  E-value=5.1e-09  Score=93.88  Aligned_cols=173  Identities=13%  Similarity=-0.032  Sum_probs=102.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhCC--CCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALTG--MDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~--ADvVI  119 (270)
                      .|||.|+||+|++|++++..|+.+|+  +|+++|++........+........+..    +....++++++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            47899999999999999999999998  9999999764211111111100011111    1111234455665  59999


Q ss_pred             EcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhH
Q 024248          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV  196 (270)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt  196 (270)
                      ++||.....  ..+....+..|+.....+++.+.+......|+++|.. +.....  ...+.+....++...+|.++...
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~--~~~~~e~~~~~~~~~Y~~sK~~~  158 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQ--EIPQTEKTPFYPRSPYAVAKLFG  158 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHH
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCC--CCCCCccCCCCCCChhHHHHHHH
Confidence            999864211  1234456788999999999999876543556655432 110000  00000111233445577777777


Q ss_pred             HHHHHHHHHHhCCCCCcc-ceEEEccC
Q 024248          197 VRANTFVAEVLGLDPREV-DVPVVGGH  222 (270)
Q Consensus       197 ~r~~~~lA~~l~v~~~~v-~~~V~G~h  222 (270)
                      .++...+++.++++.... .+.++|..
T Consensus       159 e~~~~~~~~~~~~~~~~~r~~~~~gpg  185 (345)
T 2z1m_A          159 HWITVNYREAYNMFACSGILFNHESPL  185 (345)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHhCCceEeeeeeeecCCC
Confidence            788888888888765443 45667753

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.92  E-value=1.4e-08  Score=92.20  Aligned_cols=166  Identities=10%  Similarity=0.039  Sum_probs=102.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC-----CCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-----GMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~-----~ADvVI  119 (270)
                      .|||+|+||+|++|++++..|+..| .  +|+++++.........+....   ....+.....++++++     ++|+||
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLN---IADYMDKEDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSC---CSEEEEHHHHHHHHHTTCCCSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCce---EeeecCcHHHHHHHHhhcccCCCCEEE
Confidence            4789999999999999999999998 7  899999875422111121110   0001211223455565     599999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHH--HHHHHHHHhCCCCCCCeeeechhhH
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVP--IAAEVFKKVGTYDPKRLLGVTMLDV  196 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~--i~t~~~~~~sg~p~~kviG~t~ldt  196 (270)
                      ++|+.......+..+++..|+.....+++.+.+...  .||++|.. +.....  .+.    +.....+...+|.++...
T Consensus       121 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~SS~~v~g~~~~~~~~----E~~~~~p~~~Y~~sK~~~  194 (357)
T 2x6t_A          121 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIE----SREYEKPLNVFGYSKFLF  194 (357)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGCSCSSCCCS----SGGGCCCSSHHHHHHHHH
T ss_pred             ECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcchHHhCCCCCCCcC----CcCCCCCCChhHHHHHHH
Confidence            999865432234456778999999999999988655  45555421 110000  000    000011234566677777


Q ss_pred             HHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          197 VRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       197 ~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .++...+++..|++...++ +.|+|..
T Consensus       195 E~~~~~~~~~~g~~~~ilRp~~v~Gp~  221 (357)
T 2x6t_A          195 DEYVRQILPEANSQIVGFRYFNVYGPR  221 (357)
T ss_dssp             HHHHHHHGGGCSSCEEEEEECEEESSS
T ss_pred             HHHHHHHHHHcCCCEEEEecCeEECCC
Confidence            7777777777788777776 4889875

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.92  E-value=6.3e-09  Score=94.26  Aligned_cols=172  Identities=17%  Similarity=0.095  Sum_probs=104.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCC--h-hHHHHhhccccCcceeee----eccCCHHHHhC--CCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--P-GVTADISHMDTNAVVRGF----LGQQQLEDALT--GMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~--~-~~~~dl~~~~~~~~~~~i----~~t~d~~~al~--~AD  116 (270)
                      |||.|+||+|++|++++..|+.. |+  +|+++|+...  . ....++..   ...+..+    ....+++++++  ++|
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISE---SNRYNFEHADICDSAEITRIFEQYQPD   75 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTT---CTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhc---CCCeEEEECCCCCHHHHHHHHhhcCCC
Confidence            79999999999999999999887 67  9999998642  1 11111211   1111111    11123455666  899


Q ss_pred             EEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHh--CCC------CEEEEecCC-CCCcHHHHHH--------HH
Q 024248          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC--CPK------AIVNLISNP-VNSTVPIAAE--------VF  177 (270)
Q Consensus       117 vVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~--~p~------a~viv~sNP-v~~~~~i~t~--------~~  177 (270)
                      +||++||.....  ..+..+++..|+.....+++.+.+.  ..+      +.||++|.. +......-..        .+
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~  155 (361)
T 1kew_A           76 AVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF  155 (361)
T ss_dssp             EEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB
T ss_pred             EEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCC
Confidence            999999864210  0123456788999999999999876  433      356665531 1100000000        00


Q ss_pred             HHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       178 ~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      .+....++...++.++....++...+++.+|++...++ +.|+|...
T Consensus       156 ~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~  202 (361)
T 1kew_A          156 TETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH  202 (361)
T ss_dssp             CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCC
Confidence            01111234445777787778888888888898877776 48889753

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.91  E-value=4.9e-09  Score=94.48  Aligned_cols=169  Identities=16%  Similarity=0.106  Sum_probs=104.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCCh---hHHHHhhccccCcceee----eeccCCHHHHhCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTP---GVTADISHMDTNAVVRG----FLGQQQLEDALTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADv  117 (270)
                      |||.|+||+|++|++++..|+..  |+  +|+++|+....   ....++..    ..+..    +....+++++++++|+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~d~   78 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAILG----DRVELVVGDIADAELVDKLAAKADA   78 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGCS----SSEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhcc----CCeEEEECCCCCHHHHHHHhhcCCE
Confidence            58999999999999999999887  67  99999986421   11112211    11111    1111235677899999


Q ss_pred             EEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHH------HH----HHHHHhCCCC
Q 024248          118 VIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPI------AA----EVFKKVGTYD  184 (270)
Q Consensus       118 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i------~t----~~~~~~sg~p  184 (270)
                      ||++|+.....  ..+..+++..|+.....+++.+.+...  .|+++|.. +.....-      ..    ..+.+....+
T Consensus        79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~  156 (348)
T 1oc2_A           79 IVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN  156 (348)
T ss_dssp             EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCC
T ss_pred             EEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcCCCCCCC
Confidence            99999864210  012345678899999999999988743  56655421 1100000      00    0000111233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +...++.++....++...+++.+|++...++ +.|+|...
T Consensus       157 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~  196 (348)
T 1oc2_A          157 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  196 (348)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCC
Confidence            4445677777777888888888888877775 48888653

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.89  E-value=2.2e-08  Score=90.06  Aligned_cols=174  Identities=14%  Similarity=0.048  Sum_probs=103.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhcccc-Cccee----eeeccCCHHHHhCCCCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDT-NAVVR----GFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~-~~~~~----~i~~t~d~~~al~~ADvV  118 (270)
                      +.+||.|+||+||+|++++..|+.+|+  +|+.++++.... ....+..... ...+.    .+....+++++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            346899999999999999999999998  999888765421 1111111100 00111    122233567789999999


Q ss_pred             EEcCCCCCCCCCc-hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCC--c---HHHHHHH-------HHHhCCCCC
Q 024248          119 IIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS--T---VPIAAEV-------FKKVGTYDP  185 (270)
Q Consensus       119 Ii~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~--~---~~i~t~~-------~~~~sg~p~  185 (270)
                      |++|+.......+ ..+++..|+....++++.+.+...-..||++|.....  .   ...+.+-       ....  .++
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~--~~~  159 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAK--KMT  159 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHH--CCT
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhccc--CCc
Confidence            9998754211122 2346788999999999999887533455555532210  0   0000000       0000  012


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      ...++.++....++...+++..|++...++ +.|+|+.
T Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~  197 (337)
T 2c29_D          160 AWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPF  197 (337)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence            234666776666777777777788877775 5888975

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.89  E-value=2.3e-08  Score=88.31  Aligned_cols=165  Identities=10%  Similarity=0.033  Sum_probs=102.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC-----CCEEEEc
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG-----MDIVIIP  121 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~-----ADvVIi~  121 (270)
                      ||.|+||+|++|++++..|+.+| +  +|+++++........++.......   .+.....+++++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIAD---YMDKEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSE---EEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceecc---ccccHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999998 7  999999875422111222111001   12222235556664     9999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHH--HHHHHHHHhCCCCCCCeeeechhhHHH
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVP--IAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~--i~t~~~~~~sg~p~~kviG~t~ldt~r  198 (270)
                      ++.......+..+++..|+.....+++.+.+...  .++++|.. +.....  .+.    +.....+...++.++....+
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~----E~~~~~p~~~Y~~sK~~~e~  149 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIE----SREYEKPLNVYGYSKFLFDE  149 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCS----SGGGCCCSSHHHHHHHHHHH
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeHHHhCCCCCCCCC----CCCCCCCCChhHHHHHHHHH
Confidence            9865432234456778899999999999988765  45555422 110000  000    00001223346667777777


Q ss_pred             HHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          199 ANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +...+++..|++..-++ +.++|...
T Consensus       150 ~~~~~~~~~g~~~~~lrp~~v~G~~~  175 (310)
T 1eq2_A          150 YVRQILPEANSQIVGFRYFNVYGPRE  175 (310)
T ss_dssp             HHHHHGGGCSSCEEEEEECEEESSSC
T ss_pred             HHHHHHHHcCCCEEEEeCCcEECcCC
Confidence            77777777788777776 58899753

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.88  E-value=4.9e-09  Score=93.46  Aligned_cols=172  Identities=12%  Similarity=0.109  Sum_probs=104.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC--CCEEEEc
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIP  121 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~--ADvVIi~  121 (270)
                      .+.++|.|+||+|++|++++..|+.+|+  +|+++|++... ..  + ...  ...-.+....++++++++  .|+||++
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~--l-~~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~   81 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-KL--P-NVE--MISLDIMDSQRVKKVISDIKPDYIFHL   81 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-CC--T-TEE--EEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-cc--c-eee--EEECCCCCHHHHHHHHHhcCCCEEEEc
Confidence            4456999999999999999999999998  99999987532 10  1 000  000001111234556665  8999999


Q ss_pred             CCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHH
Q 024248          122 AGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (270)
Q Consensus       122 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r  198 (270)
                      |+.....  ..+..+.+..|+.....+++.+.+......||++|.. +.....--...+.+....++...++.++....+
T Consensus        82 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~  161 (321)
T 2pk3_A           82 AAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGM  161 (321)
T ss_dssp             CSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHHHHHHH
T ss_pred             CcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHH
Confidence            9864310  1134457788999999999999765434556655532 110000000000011112334456777777778


Q ss_pred             HHHHHHHHhCCCCCccce-EEEccCC
Q 024248          199 ANTFVAEVLGLDPREVDV-PVVGGHA  223 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~-~V~G~hg  223 (270)
                      +...+++..|++...++. .|+|...
T Consensus       162 ~~~~~~~~~gi~~~ilrp~~v~g~~~  187 (321)
T 2pk3_A          162 LARQYVKAYGMDIIHTRTFNHIGPGQ  187 (321)
T ss_dssp             HHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHcCCCEEEEEeCcccCcCC
Confidence            888888888888777754 8899654

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.88  E-value=7.2e-09  Score=93.08  Aligned_cols=174  Identities=17%  Similarity=0.137  Sum_probs=105.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hhHHHHhhccccCccee-eeeccCCHHHHhCC--CCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVR-GFLGQQQLEDALTG--MDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~--ADvVIi  120 (270)
                      |||+|+||+|++|++++..|+..|+  +|+++|+...   .....++........+. .+....++++++++  +|+||+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH   79 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEE
Confidence            5899999999999999999999998  9999998532   11122232211000000 01111235567777  999999


Q ss_pred             cCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHH--------------HHHHHHhCCC
Q 024248          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIA--------------AEVFKKVGTY  183 (270)
Q Consensus       121 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~--------------t~~~~~~sg~  183 (270)
                      +|+.....  ..+..+.+..|+.....+++.+.+....+.||++|.. +.....-.              ...+.+....
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~  159 (347)
T 1orr_A           80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL  159 (347)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred             CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCC
Confidence            99864210  0123456788999999999999988765556666532 11000000              0000000112


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      ++...+|.++....++...+++.+|++...++ +.|+|..
T Consensus       160 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~  199 (347)
T 1orr_A          160 DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGR  199 (347)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcC
Confidence            23334666777777888888888888877775 4889865

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.87  E-value=1.6e-08  Score=95.38  Aligned_cols=114  Identities=21%  Similarity=0.285  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccc--------eeeeeccCCHHHH
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAV--------VRGFLGQQQLEDA  111 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~--------~~~i~~t~d~~~a  111 (270)
                      .++.|||+|||+ |++|..+|..|++ |+  +|+++|++++..  ..+.....   .+.        ...+..++|++++
T Consensus        33 ~~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~v--~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea  106 (432)
T 3pid_A           33 GSEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAKV--DMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDA  106 (432)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHHH--HHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred             ccCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHHh--hHHhccCCccccccHHHHHhhccCCeEEEcCHHHH
Confidence            456789999997 9999999999887 88  999999985421  11221100   000        0123457789899


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCC
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVN  167 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~  167 (270)
                      +++||+||++...+.......     -++..+.+.++.+.+..|+.++++.| .|..
T Consensus       107 ~~~aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pg  158 (432)
T 3pid_A          107 YRNADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVG  158 (432)
T ss_dssp             HTTCSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTT
T ss_pred             HhCCCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChH
Confidence            999999999976553221111     12344455555555555777776654 5665

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.86  E-value=2.1e-08  Score=89.77  Aligned_cols=175  Identities=13%  Similarity=-0.005  Sum_probs=102.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HHH-hhccccCccee-----eeeccCCHHHHhCCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TAD-ISHMDTNAVVR-----GFLGQQQLEDALTGMD  116 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~d-l~~~~~~~~~~-----~i~~t~d~~~al~~AD  116 (270)
                      .+.|+|.|+||+|++|++++..|+..|+  +|++++++..... ..+ +.... ...+.     .+....+++++++++|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCC
Confidence            3457999999999999999999999998  9999998643211 111 11000 01111     1112234556778999


Q ss_pred             EEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcH-H-----HHHH---------HHHHh
Q 024248          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV-P-----IAAE---------VFKKV  180 (270)
Q Consensus       117 vVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~-~-----i~t~---------~~~~~  180 (270)
                      +||++|+.... ..+..+.+..|+.....+++.+.+......|+++|.. +.... +     .+++         ..+..
T Consensus        86 ~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  164 (342)
T 1y1p_A           86 GVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTL  164 (342)
T ss_dssp             EEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHS
T ss_pred             EEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhccc
Confidence            99999986532 2344567789999999999998753323456656532 11000 0     0000         00000


Q ss_pred             CCC---CCCCeeeechhhHHHHHHHHHHHhC--CCCCccc-eEEEccC
Q 024248          181 GTY---DPKRLLGVTMLDVVRANTFVAEVLG--LDPREVD-VPVVGGH  222 (270)
Q Consensus       181 sg~---p~~kviG~t~ldt~r~~~~lA~~l~--v~~~~v~-~~V~G~h  222 (270)
                      ...   ++...+|.++....++...+++.++  +....++ +.++|+.
T Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~  212 (342)
T 1y1p_A          165 PESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTI  212 (342)
T ss_dssp             CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCC
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCC
Confidence            000   0112366677777788888888774  3333343 4788865

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.85  E-value=9.4e-09  Score=93.12  Aligned_cols=174  Identities=13%  Similarity=0.010  Sum_probs=105.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhcccc---Ccceee----eeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDT---NAVVRG----FLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~---~~~~~~----i~~t~d~~~al~~A  115 (270)
                      +.|||+|+||+|++|++++..|+..|+  +|+++|++...  ....++.....   ...+..    +....+++++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            346999999999999999999999998  99999986531  11111111000   011111    11112356778999


Q ss_pred             CEEEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          116 DIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       116 DvVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      |+||++|+......  .+..+.+..|+.....+++.+.+... ..|+++|.. +.....  ...+.+..-..+...+|.+
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~v~~SS~~~~~~~~--~~~~~E~~~~~~~~~Y~~s  180 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV-QSFTYAASSSTYGDHP--GLPKVEDTIGKPLSPYAVT  180 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-SEEEEEEEGGGGTTCC--CSSBCTTCCCCCCSHHHHH
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccHHhcCCCC--CCCCCCCCCCCCCChhHHH
Confidence            99999998642100  12345677899999999999987643 345555422 110000  0000000001233456677


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +....++...+++.+|++...++ +.|+|+..
T Consensus       181 K~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~  212 (352)
T 1sb8_A          181 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  212 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEECceeCcCC
Confidence            77777888888888899888776 48999753

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.85  E-value=7.4e-09  Score=93.18  Aligned_cols=158  Identities=14%  Similarity=0.068  Sum_probs=95.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhC--CCCE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALT--GMDI  117 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~--~ADv  117 (270)
                      .+.|+|+|+||+|++|++++..|+..|+  +|+++|++.....  ++....  ..+..    +....+++++++  ++|+
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~~D~   91 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFDSFKPTH   91 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHhhcCCCE
Confidence            4457999999999999999999999998  9999998643211  000000  11111    111123556677  9999


Q ss_pred             EEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCC--C------CCCe
Q 024248          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTY--D------PKRL  188 (270)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~--p------~~kv  188 (270)
                      ||++||..........+ +..|+.....+++.+.+... ..||++|.. +..          ...+.  |      +...
T Consensus        92 vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~SS~~~~~----------~~~~~~~~~~E~~~~~~~  159 (330)
T 2pzm_A           92 VVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGV-KRLLNFQTALCYG----------RPATVPIPIDSPTAPFTS  159 (330)
T ss_dssp             EEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTC-SEEEEEEEGGGGC----------SCSSSSBCTTCCCCCCSH
T ss_pred             EEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCC-CEEEEecCHHHhC----------CCccCCCCcCCCCCCCCh
Confidence            99999865321112223 67899999999999987653 355555422 110          00000  1      2334


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ++.++....++    .+.++++...++ +.++|...
T Consensus       160 Y~~sK~~~e~~----~~~~~~~~~~iR~~~v~gp~~  191 (330)
T 2pzm_A          160 YGISKTAGEAF----LMMSDVPVVSLRLANVTGPRL  191 (330)
T ss_dssp             HHHHHHHHHHH----HHTCSSCEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHH----HHHcCCCEEEEeeeeeECcCC
Confidence            55555544333    333477777777 78999764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.83  E-value=3e-08  Score=84.86  Aligned_cols=159  Identities=16%  Similarity=0.091  Sum_probs=97.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .+.|||+|+||+|++|++++..|+++|+  +|++++++.....  .+.+......+. .+.  .++.+++.++|+||+++
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~a   92 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERGASDIVVANLE--EDFSHAFASIDAVVFAA   92 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTTCSEEEECCTT--SCCGGGGTTCSEEEECC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCCCceEEEcccH--HHHHHHHcCCCEEEECC
Confidence            4467999999999999999999999998  9999999754321  121111000000 011  45678899999999999


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTF  202 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~  202 (270)
                      |....  .+....+..|+.....+++.+++... ..|+++|.-....    .    ... .++...++.++....+    
T Consensus        93 g~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~-~~iv~~SS~~~~~----~----~~~-~~~~~~Y~~sK~~~e~----  156 (236)
T 3e8x_A           93 GSGPH--TGADKTILIDLWGAIKTIQEAEKRGI-KRFIMVSSVGTVD----P----DQG-PMNMRHYLVAKRLADD----  156 (236)
T ss_dssp             CCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTC-CEEEEECCTTCSC----G----GGS-CGGGHHHHHHHHHHHH----
T ss_pred             CCCCC--CCccccchhhHHHHHHHHHHHHHcCC-CEEEEEecCCCCC----C----CCC-hhhhhhHHHHHHHHHH----
Confidence            86532  23456678899999999999988754 3555555422110    0    000 0111223334433322    


Q ss_pred             HHHHhCCCCCccc-eEEEccCCC
Q 024248          203 VAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       203 lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      +.+..|++..-++ ++++|+.+.
T Consensus       157 ~~~~~gi~~~~lrpg~v~~~~~~  179 (236)
T 3e8x_A          157 ELKRSSLDYTIVRPGPLSNEEST  179 (236)
T ss_dssp             HHHHSSSEEEEEEECSEECSCCC
T ss_pred             HHHHCCCCEEEEeCCcccCCCCC
Confidence            2346777766665 478887654

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=98.83  E-value=1.8e-08  Score=92.53  Aligned_cols=174  Identities=17%  Similarity=0.112  Sum_probs=102.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEeCCCCh---------hH-HHH-hhcccc---Ccc---eeeee----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTP---------GV-TAD-ISHMDT---NAV---VRGFL----  103 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~-~~g~~~eV~LvD~~~~~---------~~-~~d-l~~~~~---~~~---~~~i~----  103 (270)
                      .|||+|+||+|++|++++..|+ ..|+  +|+++|+....         .. ..+ +.....   ...   +..+.    
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   79 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence            4799999999999999999999 9998  99999986432         11 111 111000   001   11111    


Q ss_pred             ccCCHHHHhC--C-CCEEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHH--HH--
Q 024248          104 GQQQLEDALT--G-MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVP--IA--  173 (270)
Q Consensus       104 ~t~d~~~al~--~-ADvVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~--i~--  173 (270)
                      ...+++++++  + +|+||++|+.....  ..+..+++..|+.....+++.+.+.... .||++|. -+.....  ..  
T Consensus        80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~SS~~v~g~~~~~~~~~  158 (397)
T 1gy8_A           80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVST  158 (397)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEECCHHHhCCCCcccccc
Confidence            1112445566  6 99999999864211  0123456788999999999999876443 4444442 1110000  00  


Q ss_pred             -HHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          174 -AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       174 -t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                       ...+.+.....+...++.++....++...+++.+|++...++ +.|+|.+
T Consensus       159 ~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~  209 (397)
T 1gy8_A          159 NAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (397)
T ss_dssp             CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             cccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCC
Confidence             000000000112344666777778888888888888877775 4888875

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.83  E-value=1.8e-08  Score=91.23  Aligned_cols=171  Identities=15%  Similarity=0.065  Sum_probs=102.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHhCC--CCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDALTG--MDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al~~--ADv  117 (270)
                      .|+|.|+||+|++|++++..|+..|+  +|++++++....  ....+...   ..+..    +....++++++++  +|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARVA---DGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTTT---TTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhccC---CceEEEEccccCHHHHHHHHHhcCCCE
Confidence            47999999999999999999999998  999999975321  11111100   11111    1111234455665  899


Q ss_pred             EEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechh
Q 024248          118 VIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (270)
Q Consensus       118 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~l  194 (270)
                      ||++|+.+...  ..+..+.+..|+.....+++.+.+......|+++|.. +.....- ...+.+....++...++.++.
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~-~~~~~E~~~~~~~~~Y~~sK~  162 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW-IWGYRENEAMGGYDPYSNSKG  162 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS-SSCBCTTSCBCCSSHHHHHHH
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCc-CCCCCCCCCCCCCCccHHHHH
Confidence            99999854210  0123456788999999999999886533456656532 1100000 000001111233445666777


Q ss_pred             hHHHHHHHHHHHh---------CCCCCccc-eEEEccC
Q 024248          195 DVVRANTFVAEVL---------GLDPREVD-VPVVGGH  222 (270)
Q Consensus       195 dt~r~~~~lA~~l---------~v~~~~v~-~~V~G~h  222 (270)
                      ...++...+++.+         |++...++ +.|+|..
T Consensus       163 ~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~  200 (357)
T 1rkx_A          163 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG  200 (357)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred             HHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCC
Confidence            7777877787766         77776775 4889864

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=98.82  E-value=1.1e-08  Score=90.90  Aligned_cols=166  Identities=17%  Similarity=0.074  Sum_probs=100.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhC--CCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALT--GMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~--~ADvVIi~ag  123 (270)
                      |||.|+||+|++|++++..|+.+|+  +|+++|+..... ...+... . ..+. .+....+++++++  ++|+||++++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~-~~~~~~~-~-~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATGK-RENVPKG-V-PFFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSCC-GGGSCTT-C-CEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcCc-hhhcccC-e-EEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            7999999999999999999999998  999999853211 1111100 0 0000 0111123455666  8999999987


Q ss_pred             CCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHH-----HHHHhCCCCCCCeeeechhhH
Q 024248          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE-----VFKKVGTYDPKRLLGVTMLDV  196 (270)
Q Consensus       124 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~-----~~~~~sg~p~~kviG~t~ldt  196 (270)
                      .....  ..+....+..|+.....+++.+.+... ..++++|....    +...     .+.+....++...+|.++...
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iv~~SS~~~----~~g~~~~~~~~~E~~~~~~~~~Y~~sK~~~  150 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV-EKLVFASTGGA----IYGEVPEGERAEETWPPRPKSPYAASKAAF  150 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-SEEEEEEEHHH----HHCCCCTTCCBCTTSCCCCCSHHHHHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CEEEEeCCChh----hcCCCCCCCCcCCCCCCCCCChHHHHHHHH
Confidence            54210  012345678899999999999987543 34555542100    0000     000000112334567777777


Q ss_pred             HHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          197 VRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       197 ~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .++...+++..|++...++ +.|+|..
T Consensus       151 e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          151 EHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            7888888888898877776 4889964

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.82  E-value=4.3e-09  Score=96.21  Aligned_cols=138  Identities=17%  Similarity=0.145  Sum_probs=99.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||.|+||+|++|++++..|+.+|.. +|+.+|++         .+            ..+++++++++|+||++|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~---------~d------------~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ---------TK------------EEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT---------CC------------HHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC---------CC------------HHHHHHHhccCCEEEECCcCCC
Confidence            79999999999999999999988753 88888874         01            1135567788999999998654


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHH
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~  206 (270)
                      ..  ...+.+..|+...+++++.+++......++.+|...-               ++ ...+|.++....++...+++.
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~---------------~~-~~~Y~~sK~~~E~~~~~~~~~  120 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA---------------TQ-DNPYGESKLQGEQLLREYAEE  120 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGG---------------GS-CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhh---------------cC-CCCchHHHHHHHHHHHHHHHH
Confidence            22  2334567788899999999987665545665553211               11 334566777777888888888


Q ss_pred             hCCCCCccce-EEEccCCC
Q 024248          207 LGLDPREVDV-PVVGGHAG  224 (270)
Q Consensus       207 l~v~~~~v~~-~V~G~hg~  224 (270)
                      .+++..-++. .++|..+.
T Consensus       121 ~g~~~~i~R~~~v~G~~~~  139 (369)
T 3st7_A          121 YGNTVYIYRWPNLFGKWCK  139 (369)
T ss_dssp             HCCCEEEEEECEEECTTCC
T ss_pred             hCCCEEEEECCceeCCCCC
Confidence            8988777764 88997543

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.82  E-value=1e-08  Score=94.19  Aligned_cols=177  Identities=12%  Similarity=0.061  Sum_probs=102.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh------------------HHHHhhccccCcceee----
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------------------VTADISHMDTNAVVRG----  101 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~------------------~~~dl~~~~~~~~~~~----  101 (270)
                      .+.|+|.|+||+||||++++..|+.+|+  +|+++|+.....                  ...++.... ...+..    
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~D   85 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGD   85 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESC
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECC
Confidence            4456999999999999999999999998  999999853110                  011111000 011111    


Q ss_pred             eeccCCHHHHhCC--CCEEEEcCCCCCCC--CCch---hhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHH-H
Q 024248          102 FLGQQQLEDALTG--MDIVIIPAGVPRKP--GMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVP-I  172 (270)
Q Consensus       102 i~~t~d~~~al~~--ADvVIi~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~-i  172 (270)
                      +....++++++++  +|+||++||.....  ..+.   ...+..|+.....+++.+.+......||++|.. +..... .
T Consensus        86 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~  165 (404)
T 1i24_A           86 ICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNID  165 (404)
T ss_dssp             TTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSC
T ss_pred             CCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCCCC
Confidence            1111234556776  99999999864211  0111   135678999999999999887643456666532 110000 0


Q ss_pred             HHHHHH--------H--hCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          173 AAEVFK--------K--VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       173 ~t~~~~--------~--~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +.+-.+        .  ....++...++.++....++...+++.+|++...++ +.|+|...
T Consensus       166 ~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~  227 (404)
T 1i24_A          166 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  227 (404)
T ss_dssp             BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             CCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCC
Confidence            000000        0  001222344666777777777778888898877776 48999753

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.82  E-value=1.6e-08  Score=90.08  Aligned_cols=159  Identities=14%  Similarity=0.144  Sum_probs=100.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi~ag  123 (270)
                      .|||.|+||+|++|++++..|+..|+  +|+++++...    .|+.+.            .+++++++  ++|+||++++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~~----~D~~d~------------~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDS------------RAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCH------------HHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCcc----CCccCH------------HHHHHHHHhcCCCEEEEcCe
Confidence            47999999999999999999999998  8888876521    233322            23556677  9999999998


Q ss_pred             CCCCC---CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcH--HHHHHHHHHhCCCCC-CCeeeechhhH
Q 024248          124 VPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKKVGTYDP-KRLLGVTMLDV  196 (270)
Q Consensus       124 ~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~--~i~t~~~~~~sg~p~-~kviG~t~ldt  196 (270)
                      .....   ..+..+++..|+.....+++.+.+... ..+|++|.. +....  ..+.+-........+ ...++.++...
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~  143 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDV-NKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAG  143 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHH
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHHHHHHH
Confidence            64210   012345678899999999999987543 355555532 11000  000000000000011 12456677777


Q ss_pred             HHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          197 VRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       197 ~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      .++...+++..+++...++ +.|+|...
T Consensus       144 E~~~~~~~~~~~~~~~ilrp~~v~G~~~  171 (321)
T 1e6u_A          144 IKLCESYNRQYGRDYRSVMPTNLYGPHD  171 (321)
T ss_dssp             HHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCcCCcCC
Confidence            7777778888888877776 48899654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.81  E-value=2.8e-09  Score=97.27  Aligned_cols=165  Identities=14%  Similarity=0.094  Sum_probs=100.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHHHHhhccccCcceee----ee-ccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FL-GQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~-~t~d~~~al~~ADvVI  119 (270)
                      .|||.|+||+|++|++++..|+.+ |+  +|+++|++.....  ++...   ..+..    +. ....++++++++|+||
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~--~~~~~---~~v~~~~~Dl~~d~~~~~~~~~~~d~Vi   96 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRLG--DLVKH---ERMHFFEGDITINKEWVEYHVKKCDVIL   96 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTTG--GGGGS---TTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhhh--hhccC---CCeEEEeCccCCCHHHHHHHhccCCEEE
Confidence            468999999999999999999887 88  9999999754211  11110   11111    11 1123556788999999


Q ss_pred             EcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCC-------CCCCee
Q 024248          120 IPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTY-------DPKRLL  189 (270)
Q Consensus       120 i~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~-------p~~kvi  189 (270)
                      ++|+......  .+..+.+..|+....++++.+++..  ..+|++|.. +.....  ...+.+....       ++...+
T Consensus        97 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS~~vyg~~~--~~~~~e~~~~~~~~p~~~p~~~Y  172 (372)
T 3slg_A           97 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCA--DEQFDPDASALTYGPINKPRWIY  172 (372)
T ss_dssp             ECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECCGGGGBSCC--CSSBCTTTCCEEECCTTCTTHHH
T ss_pred             EcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCcHHHhCCCC--CCCCCccccccccCCCCCCCCcH
Confidence            9997643111  1234566788888999999999876  456656532 110000  0000000000       111246


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccce-EEEccC
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVDV-PVVGGH  222 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~h  222 (270)
                      |.++....++...+++. |++..-++. .|+|..
T Consensus       173 ~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~  205 (372)
T 3slg_A          173 ACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPG  205 (372)
T ss_dssp             HHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSS
T ss_pred             HHHHHHHHHHHHHHHHC-CCCEEEEccccccCCC
Confidence            66777777777777766 777766754 888975

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.81  E-value=1.5e-08  Score=90.58  Aligned_cols=168  Identities=16%  Similarity=0.115  Sum_probs=101.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhC--CCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALT--GMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~--~ADvVIi~ag  123 (270)
                      |||.|+||+|++|++++..|+..|+  +|+++|+...... ..+... . ..+. .+....+++++++  ++|+||++|+
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~d~vih~a~   76 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITEG-A-KFYNGDLRDKAFLRDVFTQENIEAVMHFAA   76 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCTT-S-EEEECCTTCHHHHHHHHHHSCEEEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCCC-c-EEEECCCCCHHHHHHHHhhcCCCEEEECCc
Confidence            5899999999999999999999998  9999998643211 111100 0 0000 0111123456677  8999999998


Q ss_pred             CCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHH
Q 024248          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (270)
Q Consensus       124 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~  200 (270)
                      .....  ..+..+++..|+.....+++.+.+... ..+|++|.. +.....  ...+.+....++...++.++....++.
T Consensus        77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~v~~Ss~~~~~~~~--~~~~~E~~~~~~~~~Y~~sK~~~e~~~  153 (330)
T 2c20_A           77 DSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKV-DKFIFSSTAATYGEVD--VDLITEETMTNPTNTYGETKLAIEKML  153 (330)
T ss_dssp             CCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEECCGGGGCSCS--SSSBCTTSCCCCSSHHHHHHHHHHHHH
T ss_pred             ccCccccccCHHHHHHHHhHHHHHHHHHHHHcCC-CEEEEeCCceeeCCCC--CCCCCcCCCCCCCChHHHHHHHHHHHH
Confidence            64211  012345678899999999999987543 345555532 110000  000001111123345666777777888


Q ss_pred             HHHHHHhCCCCCccc-eEEEccC
Q 024248          201 TFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      ..+++.+|++...++ +.|+|.+
T Consensus       154 ~~~~~~~~~~~~ilrp~~v~G~~  176 (330)
T 2c20_A          154 HWYSQASNLRYKIFRYFNVAGAT  176 (330)
T ss_dssp             HHHHHTSSCEEEEEECSEEECCC
T ss_pred             HHHHHHhCCcEEEEecCcccCCC
Confidence            888887888777775 4888864

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.80  E-value=1e-08  Score=94.09  Aligned_cols=170  Identities=14%  Similarity=0.016  Sum_probs=104.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhCCCCEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADvVI  119 (270)
                      +.|||+|+||+|++|++++..|+..| +  +|+++|++..... ..+..   ...+..    +....+++++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            34789999999999999999999999 8  9999998753211 11110   011111    111123556788999999


Q ss_pred             EcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCC-CCCcHHHHHHHHH--HhC---CC-CCCCee
Q 024248          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNP-VNSTVPIAAEVFK--KVG---TY-DPKRLL  189 (270)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNP-v~~~~~i~t~~~~--~~s---g~-p~~kvi  189 (270)
                      ++|+.....  ..+..+++..|+.....+++.+.+. .. ..||++|.. +.....  ...+.  +..   .. ++...+
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~~V~~SS~~vyg~~~--~~~~~~~E~~~~~~~~~~~~~Y  181 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL-KKVVYSAAGCSIAEKT--FDDAKATEETDIVSLHNNDSPY  181 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSC-CEEEEEEEC----------------CCCCCCCSSCCCSHH
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEeCCHHHcCCCC--CCCcCcccccccccccCCCCch
Confidence            999864211  0123456788999999999999865 32 245555432 211000  00001  111   11 233456


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +.++....++...+++..|++...++ +.|+|...
T Consensus       182 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          182 SMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            77777788888888888899887776 48899754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=98.78  E-value=5.9e-08  Score=86.30  Aligned_cols=171  Identities=11%  Similarity=-0.010  Sum_probs=97.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC-CCCh---h-HHHHhhccccCccee----eeeccCCHHHHhCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTP---G-VTADISHMDTNAVVR----GFLGQQQLEDALTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~-~~~~---~-~~~dl~~~~~~~~~~----~i~~t~d~~~al~~ADv  117 (270)
                      +||.|+||+|++|++++..|+.+|+  +|+++++ +...   . ...++...  ...+.    .+....+++++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTH--HHHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhcc--CCceEEEecCCCCHHHHHHHHcCCCE
Confidence            5899999999999999999999998  9998887 4311   1 11111100  00011    01122356678899999


Q ss_pred             EEEcCCCCCCCCCc-hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCC--CCcH---HHHHH-------HHHHhCCCC
Q 024248          118 VIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV--NSTV---PIAAE-------VFKKVGTYD  184 (270)
Q Consensus       118 VIi~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv--~~~~---~i~t~-------~~~~~sg~p  184 (270)
                      ||++|+.......+ ..+++..|+.....+++.+.+...-..||++|...  ....   ..+.+       .....  .|
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~p  155 (322)
T 2p4h_X           78 IFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSV--KP  155 (322)
T ss_dssp             EEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHH--CC
T ss_pred             EEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhccc--Cc
Confidence            99998642111111 22467889999999999988752123555554221  0000   00000       00000  01


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ....++.++..+.++...+++..|++..-++ +.|+|+..
T Consensus       156 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~  195 (322)
T 2p4h_X          156 FGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFV  195 (322)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCC
Confidence            1114666776666777777777788877775 48888753

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.78  E-value=3.1e-08  Score=87.81  Aligned_cols=168  Identities=15%  Similarity=0.067  Sum_probs=101.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.|||.|+||+|++|++++..|+..|+  +|+++++....  .....+........+.      -+..++.++|+||+++
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLE------LEERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGG------CCHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCee------EEeCccccCCEEEECC
Confidence            357999999999999999999999998  99999987531  1111111110001111      1223456999999999


Q ss_pred             CCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHH
Q 024248          123 GVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRA  199 (270)
Q Consensus       123 g~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~  199 (270)
                      +.....  .....+.+. |+....++++.+.+.... .++++|. -+.....  ...+.+.....+...+|.++....++
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~SS~~v~~~~~--~~~~~E~~~~~p~~~Y~~sK~~~E~~  153 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGSTCEVYGQAD--TLPTPEDSPLSPRSPYAASKVGLEMV  153 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEecCHHHhCCCC--CCCCCCCCCCCCCChhHHHHHHHHHH
Confidence            754210  011233456 999999999999987644 4444442 1110000  00000111123345577778878888


Q ss_pred             HHHHHHHhCC-CCCccc-eEEEccCCC
Q 024248          200 NTFVAEVLGL-DPREVD-VPVVGGHAG  224 (270)
Q Consensus       200 ~~~lA~~l~v-~~~~v~-~~V~G~hg~  224 (270)
                      ...+++..++ +..-++ +.++|....
T Consensus       154 ~~~~~~~~~~~~~~ilRp~~v~G~~~~  180 (321)
T 3vps_A          154 AGAHQRASVAPEVGIVRFFNVYGPGER  180 (321)
T ss_dssp             HHHHHHSSSSCEEEEEEECEEECTTCC
T ss_pred             HHHHHHHcCCCceEEEEeccccCcCCC
Confidence            8888888888 666665 488996543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.78  E-value=2.4e-08  Score=100.04  Aligned_cols=140  Identities=12%  Similarity=0.168  Sum_probs=95.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hhH--HHH-h-------hccccCcceeeeeccCCHHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TAD-I-------SHMDTNAVVRGFLGQQQLEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~--~~d-l-------~~~~~~~~~~~i~~t~d~~~al~  113 (270)
                      .||+|+|+ |.+|+.+|..++..|+  +|+|+|++++   .+.  ... +       ...........+..++++ ++++
T Consensus       317 ~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  392 (742)
T 3zwc_A          317 SSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELS  392 (742)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGG
T ss_pred             cEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHh
Confidence            48999998 9999999999999999  9999999863   111  100 0       000011112223456677 6799


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-  191 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-  191 (270)
                      +||+||.++              .+|+++.+++.+.++++++ ++++  .||.+...   ++++.. ... .|+|++|+ 
T Consensus       393 ~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~---i~~ia~-~~~-~p~r~ig~H  451 (742)
T 3zwc_A          393 TVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSALN---VDDIAS-STD-RPQLVIGTH  451 (742)
T ss_dssp             SCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHHT-TSS-CGGGEEEEE
T ss_pred             hCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcCC---hHHHHh-hcC-Ccccccccc
Confidence            999999986              3568999999999999985 6655  89998873   555543 222 35677775 


Q ss_pred             ------------------chhhHHHHHHHHHHHhCCCC
Q 024248          192 ------------------TMLDVVRANTFVAEVLGLDP  211 (270)
Q Consensus       192 ------------------t~ldt~r~~~~lA~~l~v~~  211 (270)
                                        |.-++......+++.+|..|
T Consensus       452 FfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~p  489 (742)
T 3zwc_A          452 FFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG  489 (742)
T ss_dssp             CCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred             ccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence                              33444445566778887665

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.78  E-value=2.8e-08  Score=88.36  Aligned_cols=103  Identities=17%  Similarity=0.272  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HH-Hhhc-----------c---ccCcceeeeeccCCHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TA-DISH-----------M---DTNAVVRGFLGQQQLED  110 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~-dl~~-----------~---~~~~~~~~i~~t~d~~~  110 (270)
                      +||+|||+ |.+|+.+|..++..|+  +|+++|++++... .. .+.+           .   ........+..++++++
T Consensus         5 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~   81 (283)
T 4e12_A            5 TNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ   81 (283)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence            58999998 9999999999999999  9999999863211 11 1000           0   00000011234568888


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCC
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~  168 (270)
                      ++++||+||+++.              .+.+..+++++.+.+.+ |++++  +||.+..
T Consensus        82 ~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~  124 (283)
T 4e12_A           82 AVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSSTL  124 (283)
T ss_dssp             HTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred             HhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCCC
Confidence            8999999999862              12445567777787776 45655  4454443

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.78  E-value=9.7e-08  Score=86.06  Aligned_cols=169  Identities=12%  Similarity=0.028  Sum_probs=101.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .|||+|+||+|++|++++..|+..|+  +|+++|+....  ....++..   ...+..+. .+-.+.++.++|+||++|+
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~-~D~~~~~~~~~d~vih~A~  100 (343)
T 2b69_A           27 RKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRNVEHWIG---HENFELIN-HDVVEPLYIEVDQIYHLAS  100 (343)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGGTGGGTT---CTTEEEEE-CCTTSCCCCCCSEEEECCS
T ss_pred             CCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccchhhhhhhcc---CCceEEEe-CccCChhhcCCCEEEECcc
Confidence            46899999999999999999999998  99999986421  11111111   11122111 1111235778999999998


Q ss_pred             CCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcH--HHHHHHHHH-hCCCCCCCeeeechhhHH
Q 024248          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKK-VGTYDPKRLLGVTMLDVV  197 (270)
Q Consensus       124 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~--~i~t~~~~~-~sg~p~~kviG~t~ldt~  197 (270)
                      .....  ..+..+.+..|+....++++.+.+...  .++++|.. +....  ..+.+-.+. ....++...+|.++....
T Consensus       101 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E  178 (343)
T 2b69_A          101 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAE  178 (343)
T ss_dssp             CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHHHH
Confidence            54211  112345678899999999999988753  55555521 11000  000000000 001112233666777777


Q ss_pred             HHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          198 RANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       198 r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      ++...+++..+++..-++ +.|+|..
T Consensus       179 ~~~~~~~~~~~~~~~ilrp~~v~G~~  204 (343)
T 2b69_A          179 TMCYAYMKQEGVEVRVARIFNTFGPR  204 (343)
T ss_dssp             HHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHhCCcEEEEEEcceeCcC
Confidence            777778888888877775 4888864

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.76  E-value=1.3e-08  Score=94.87  Aligned_cols=135  Identities=17%  Similarity=0.278  Sum_probs=67.8

Q ss_pred             cchhhHHHHHHHhhcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCC------ccEEEEE
Q 024248            5 TSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL------VSVLHLY   78 (270)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~------~~eV~Lv   78 (270)
                      ||++..||+..++||++..-|.+...+      .+  ...+|.||+|+|+ |.-|+++|..|+++++      ..+|.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw   71 (391)
T 4fgw_A            1 MSAAADRLNLTSGHLNAGRKRSSSSVS------LK--AAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMW   71 (391)
T ss_dssp             ----------------------------------------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred             CcchhhHHHHHhhhhcccccccccccc------cc--ccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEE
Confidence            789999999999999987655432111      11  1345669999998 9999999999988653      1269999


Q ss_pred             eCCCC---hhHHHHhhccccC----cc--e-eeeeccCCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHH
Q 024248           79 DVVNT---PGVTADISHMDTN----AV--V-RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE  148 (270)
Q Consensus        79 D~~~~---~~~~~dl~~~~~~----~~--~-~~i~~t~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~  148 (270)
                      .++++   ......+.....+    +.  + ..+..++|+++++++||+||++..                .+.++++++
T Consensus        72 ~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al~~ad~ii~avP----------------s~~~r~~l~  135 (391)
T 4fgw_A           72 VFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSVKDVDIIVFNIP----------------HQFLPRICS  135 (391)
T ss_dssp             CCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHHTTCSEEEECSC----------------GGGHHHHHH
T ss_pred             EcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHHhcCCEEEEECC----------------hhhhHHHHH
Confidence            88753   1122223221111    11  1 124567899999999999999862                123466777


Q ss_pred             HHhHhC-CCCEEEEecC
Q 024248          149 GIAKCC-PKAIVNLISN  164 (270)
Q Consensus       149 ~i~~~~-p~a~viv~sN  164 (270)
                      .++.+- ++..++.++-
T Consensus       136 ~l~~~~~~~~~iv~~~K  152 (391)
T 4fgw_A          136 QLKGHVDSHVRAISCLK  152 (391)
T ss_dssp             HHTTTSCTTCEEEECCC
T ss_pred             HhccccCCCceeEEecc
Confidence            777655 4566666654

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.76  E-value=2.2e-08  Score=89.88  Aligned_cols=166  Identities=14%  Similarity=0.060  Sum_probs=101.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHHHHhhccccCcceeeee--cc---CCHHHHhCCCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQ---QQLEDALTGMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~--~t---~d~~~al~~ADvVIi  120 (270)
                      |||.|+||+|++|++++..|+.. |+  +|++++++.....  ++...   ..+..+.  .+   ..++++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~--~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS--RFLNH---PHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGGG--GGTTC---TTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchHH--HhhcC---CCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            68999999999999999999987 78  9999999753211  11111   1111111  01   125567789999999


Q ss_pred             cCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCC----CC---CCCeee
Q 024248          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGT----YD---PKRLLG  190 (270)
Q Consensus       121 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg----~p---~~kviG  190 (270)
                      +|+.....  ..+..+++..|+.....+++.+.+..  ..++++|.. +.....  ...+.+...    .|   +...+|
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~v~g~~~--~~~~~e~~~~~~~~~~~~~~~~Y~  149 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCS--DKYFDEDHSNLIVGPVNKPRWIYS  149 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBTCC--CSSBCTTTCCCBCCCTTCGGGHHH
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecHHHcCCCC--CCCcCCcccccccCcccCcccccH
Confidence            99864211  01234566788889999999998764  566666532 110000  000000000    00   111466


Q ss_pred             echhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      .++....++...+++..|++...++ +.|+|...
T Consensus       150 ~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~  183 (345)
T 2bll_A          150 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL  183 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSC
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCc
Confidence            6777777888888888898887776 48888753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.76  E-value=4.1e-08  Score=93.19  Aligned_cols=107  Identities=16%  Similarity=0.164  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccce----------eeeeccCCHHHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAVV----------RGFLGQQQLEDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~~----------~~i~~t~d~~~al  112 (270)
                      .|||+|||+ |++|..+|..|+..|+  +|+++|+++.+.  ..+.....   .+.+          ..+..++|+++++
T Consensus         2 ~mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v--~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~   76 (450)
T 3gg2_A            2 SLDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKI--EQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAV   76 (450)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHG
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHH--HHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHH
Confidence            489999997 9999999999999999  999999985421  11221100   0000          1134567898899


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s  163 (270)
                      ++||+||++++.+.+++.      ..++..+.++++.+.++. ++.+|+..|
T Consensus        77 ~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           77 PEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             GGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             hcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence            999999999987754332      223556677777777765 445555544

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.76  E-value=5.8e-08  Score=89.44  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc--
Q 024248           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--   95 (270)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~--   95 (270)
                      |-|.+++..-.|+..++...-    ..+.|||+|||+ |.+|+.++..|+..|+  +|+++|+++...  ..+.....  
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~m----~~~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~--~~i~~~~~~~   75 (356)
T 3k96_A            5 HHHSSGVDLGTENLYFQSNAM----EPFKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHV--DEMQAEGVNN   75 (356)
T ss_dssp             --------------------------CCCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHH--HHHHHHSSBT
T ss_pred             cccccccccCcchhhhhhhcc----cccCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHcCCCc
Confidence            677888887666653332221    234689999998 9999999999999998  999999975322  12221100  


Q ss_pred             --Ccc--e-eeeeccCCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCc
Q 024248           96 --NAV--V-RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (270)
Q Consensus        96 --~~~--~-~~i~~t~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~  169 (270)
                        .+.  + ..+..++|+++++++||+||++..                ...++++++.+..+. |+.+++.++|.....
T Consensus        76 ~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A           76 RYLPNYPFPETLKAYCDLKASLEGVTDILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             TTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred             ccCCCCccCCCeEEECCHHHHHhcCCEEEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence              011  1 113346788889999999999862                124567778887766 567777777755432


Q ss_pred             HHHHHHHHHHh
Q 024248          170 VPIAAEVFKKV  180 (270)
Q Consensus       170 ~~i~t~~~~~~  180 (270)
                      +..+++.+.+.
T Consensus       140 t~~~se~i~~~  150 (356)
T 3k96_A          140 SRLLHEVVATE  150 (356)
T ss_dssp             TBCHHHHHHHH
T ss_pred             ccCHHHHHHHH
Confidence            11344555443

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.75  E-value=5e-08  Score=82.32  Aligned_cols=104  Identities=19%  Similarity=0.159  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||+|+||+|++|+.++..|+.+|+  +|++++++....  .++.........-.+... +. +++.++|+||+++|...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~~~~~~~~~~D~~d~-~~-~~~~~~d~vi~~ag~~~   74 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQKA--ADRLGATVATLVKEPLVL-TE-ADLDSVDAVVDALSVPW   74 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHTCTTSEEEECCGGGC-CH-HHHTTCSEEEECCCCCT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEeccccc--ccccCCCceEEecccccc-cH-hhcccCCEEEECCccCC
Confidence            7999999999999999999999998  999999974321  122111100000001111 12 67899999999998752


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .+.     ....|+...+.+++.+++..  ..++++|
T Consensus        75 ~~~-----~~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           75 GSG-----RGYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             TSS-----CTHHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             Ccc-----hhhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            211     13568899999999998765  5566665

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=98.74  E-value=9.8e-09  Score=90.98  Aligned_cols=168  Identities=13%  Similarity=0.102  Sum_probs=102.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhC--CCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALT--GMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~--~ADvVIi  120 (270)
                      .|||.|+||+|++|++++..|+..  |+  +|+++|++.......  ...   ..+. .+....+++++++  ++|+||+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~--~~~---~~~~~D~~d~~~~~~~~~~~~~d~vih   74 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDVV--NSG---PFEVVNALDFNQIEHLVEVHKITDIYL   74 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHHH--HSS---CEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccccc--CCC---ceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence            468999999999999999999887  77  999999875432111  110   0000 0111123556676  8999999


Q ss_pred             cCCCCCCC-CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHH
Q 024248          121 PAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (270)
Q Consensus       121 ~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r  198 (270)
                      +|+..... ..+..+++..|+.....+++.+.+... ..++++|.. +..... -.....+.....+...+|.++....+
T Consensus        75 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~-~~~~~~e~~~~~~~~~Y~~sK~~~e~  152 (312)
T 2yy7_A           75 MAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKI-KKIFWPSSIAVFGPTT-PKENTPQYTIMEPSTVYGISKQAGER  152 (312)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSC-SEEECCEEGGGCCTTS-CSSSBCSSCBCCCCSHHHHHHHHHHH
T ss_pred             CCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccHHHhCCCC-CCCCccccCcCCCCchhHHHHHHHHH
Confidence            99754211 012345678899999999999987543 245555422 110000 00000000001223456667777778


Q ss_pred             HHHHHHHHhCCCCCccc-eEEEccC
Q 024248          199 ANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      +...+++..|++...++ +.++|..
T Consensus       153 ~~~~~~~~~~~~~~~lrp~~v~g~~  177 (312)
T 2yy7_A          153 WCEYYHNIYGVDVRSIRYPGLISWS  177 (312)
T ss_dssp             HHHHHHHHHCCEEECEEECEEECSS
T ss_pred             HHHHHHHhcCCcEEEEeCCeEecCC
Confidence            88888888898887776 5899953

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.74  E-value=1.2e-08  Score=86.39  Aligned_cols=104  Identities=17%  Similarity=0.201  Sum_probs=71.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeec-cCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLG-QQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~-t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||.|+||+|++|..++..|+.+|+  +|++++++......  +...   ..+. .+.. ..+++++++++|+||+++|.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~--~~~~---~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~   73 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVPQ--YNNV---KAVHFDVDWTPEEMAKQLHGMDAIINVSGS   73 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSCC--CTTE---EEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchhh--cCCc---eEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence            7999999999999999999999998  99999997532110  0000   0000 0111 12456778999999999987


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      ...      +.+..|+.....+++.+++... ..++++|.
T Consensus        74 ~~~------~~~~~n~~~~~~l~~a~~~~~~-~~iv~~SS  106 (219)
T 3dqp_A           74 GGK------SLLKVDLYGAVKLMQAAEKAEV-KRFILLST  106 (219)
T ss_dssp             TTS------SCCCCCCHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCC------CcEeEeHHHHHHHHHHHHHhCC-CEEEEECc
Confidence            542      2456788888899999987643 35555553

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.72  E-value=5e-08  Score=81.92  Aligned_cols=102  Identities=11%  Similarity=0.129  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      |||+|+||+|++|++++..|+.+|+  +|++++++.....  ++... . ..+. .+... +. +++.++|+||+++|.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~~~-~-~~~~~D~~d~-~~-~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKIT--QTHKD-I-NILQKDIFDL-TL-SDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHH--HHCSS-S-EEEECCGGGC-CH-HHHTTCSEEEECCCSS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhh--hccCC-C-eEEeccccCh-hh-hhhcCCCEEEECCcCC
Confidence            7999999999999999999999998  9999999754221  12110 0 0000 01111 22 6789999999999875


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      ..       ....|+...+.+++.+++.. ...++++|.
T Consensus        73 ~~-------~~~~~~~~~~~l~~a~~~~~-~~~~v~~SS  103 (221)
T 3ew7_A           73 PD-------EAEKHVTSLDHLISVLNGTV-SPRLLVVGG  103 (221)
T ss_dssp             TT-------TTTSHHHHHHHHHHHHCSCC-SSEEEEECC
T ss_pred             cc-------ccchHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            32       12457888999999998753 345555553

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.72  E-value=6.9e-08  Score=92.27  Aligned_cols=110  Identities=13%  Similarity=0.131  Sum_probs=73.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccc----e------eeeeccCCHH
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAV----V------RGFLGQQQLE  109 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~----~------~~i~~t~d~~  109 (270)
                      +.-+|||+|||+ |+||..+|..|++.|+  +|+++|+++..  +..+.....   .+.    +      ..+..++|++
T Consensus         5 ~~~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~--v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~   79 (478)
T 2y0c_A            5 HHGSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAK--IDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIE   79 (478)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHH
T ss_pred             cCCCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHH
Confidence            345789999997 9999999999999999  99999997532  112221100   011    0      0134577888


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec
Q 024248          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (270)
Q Consensus       110 ~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s  163 (270)
                      +++++||+||++...|.+.+.      .-++..+.++++.+.++. |+.+|++.|
T Consensus        80 ~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           80 AAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             HHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             HHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            889999999999987754322      123456677777777765 455555444

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.70  E-value=2.1e-07  Score=88.51  Aligned_cols=166  Identities=11%  Similarity=0.037  Sum_probs=104.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC---CCccEEEEEeCCCChhHH-HHhhccc--------------cCcceeeeec-
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKIN---PLVSVLHLYDVVNTPGVT-ADISHMD--------------TNAVVRGFLG-  104 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~---g~~~eV~LvD~~~~~~~~-~dl~~~~--------------~~~~~~~i~~-  104 (270)
                      .+.|+|.|+||+|++|+.++..|+..   |.  +|+++++.+..... ..+.+..              ....+..+.. 
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D  148 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD  148 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence            44579999999999999999999887   66  99999997642211 1111100              0011211111 


Q ss_pred             ---------cCCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHH
Q 024248          105 ---------QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (270)
Q Consensus       105 ---------t~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~  175 (270)
                               ..++++.++++|+||++|+....  ....+.+..|+....++++.+.+...+.++.+.|..+...      
T Consensus       149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~------  220 (478)
T 4dqv_A          149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAA------  220 (478)
T ss_dssp             TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTT------
T ss_pred             CCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCc------
Confidence                     11355667899999999986532  2333567889999999999998765444444444222100      


Q ss_pred             HHHHhCCCCCC-----------------CeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEcc
Q 024248          176 VFKKVGTYDPK-----------------RLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGG  221 (270)
Q Consensus       176 ~~~~~sg~p~~-----------------kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~  221 (270)
                        .....+..+                 ..+|.++....++...+++..|++..-++ +.|+|.
T Consensus       221 --~~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~  282 (478)
T 4dqv_A          221 --IEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILAD  282 (478)
T ss_dssp             --SCTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECC
T ss_pred             --cCCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCC
Confidence              000001111                 22666777777888888888899887776 488895

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=98.70  E-value=9.8e-08  Score=86.68  Aligned_cols=172  Identities=14%  Similarity=0.006  Sum_probs=96.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccc--cCcceee----eeccCCHHHHhCC--C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMD--TNAVVRG----FLGQQQLEDALTG--M  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~--~~~~~~~----i~~t~d~~~al~~--A  115 (270)
                      |+|.|+||+|++|++++..|+..|+  +|+++|++....   ...++....  ....+..    +....++++++++  .
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP   79 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence            5899999999999999999999998  999999875321   111111100  0011111    1111234455654  6


Q ss_pred             CEEEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCC--CEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          116 DIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPK--AIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       116 DvVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~--a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      |+||++||......  .+....+..|+.....+++.+.+...+  ..|+++|.. +.....  ...+.+....++...++
T Consensus        80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~--~~~~~E~~~~~~~~~Y~  157 (372)
T 1db3_A           80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ--EIPQKETTPFYPRSPYA  157 (372)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC--SSSBCTTSCCCCCSHHH
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCC--CCCCCccCCCCCCChHH
Confidence            99999998643211  223445678999999999999876542  556665531 110000  00000111122344566


Q ss_pred             echhhHHHHHHHHHHHhCCCCCccce-EEEccC
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVDV-PVVGGH  222 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~h  222 (270)
                      .++....++...+++.++++...++. .++|..
T Consensus       158 ~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~  190 (372)
T 1db3_A          158 VAKLYAYWITVNYRESYGMYACNGILFNHESPR  190 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEECCccCCC
Confidence            77777778888888888886554432 455643

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.70  E-value=9.5e-08  Score=84.54  Aligned_cols=100  Identities=19%  Similarity=0.208  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||.|+||+||||++++..|..+|+  +|+.+.+++..+... +              .....++++++|.||++++..-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~~~~-~--------------~~~~~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPGRIT-W--------------DELAASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTEEE-H--------------HHHHHHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcCeee-c--------------chhhHhhccCCCEEEEeccCcc
Confidence            8999999999999999999999999  999998865322110 0              0011356889999999987432


Q ss_pred             CC-----CC-chhhhHHhhHHHHHHHHHHHhHhCCC-CEEEEec
Q 024248          127 KP-----GM-TRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLIS  163 (270)
Q Consensus       127 ~~-----g~-~r~~~~~~N~~i~~~i~~~i~~~~p~-a~viv~s  163 (270)
                      ..     .. ...++...|+...+.+++.++..... .+++..|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~S  107 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVT  107 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence            11     11 12356677889999999988876533 3444443

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.69  E-value=2e-08  Score=90.31  Aligned_cols=167  Identities=16%  Similarity=0.092  Sum_probs=99.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCC-------CccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHh
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDAL  112 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g-------~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al  112 (270)
                      .+.|+|.|+||+|++|++++..|+..|       .  +|+++|++......  ..    ...+..    +....++++++
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~--~V~~~~r~~~~~~~--~~----~~~~~~~~~Dl~d~~~~~~~~   83 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE--KFTLIDVFQPEAPA--GF----SGAVDARAADLSAPGEAEKLV   83 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE--EEEEEESSCCCCCT--TC----CSEEEEEECCTTSTTHHHHHH
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc--eEEEEEccCCcccc--cc----CCceeEEEcCCCCHHHHHHHH
Confidence            345799999999999999999999888       6  99999987532110  00    011110    11122355667


Q ss_pred             -CCCCEEEEcCCCCCCC-CCchhhhHHhhHHHHHHHHHHHhHhC----CCCEEEEecCC-CCCcH--HHHHHHHHHhCCC
Q 024248          113 -TGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCC----PKAIVNLISNP-VNSTV--PIAAEVFKKVGTY  183 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~sNP-v~~~~--~i~t~~~~~~sg~  183 (270)
                       .++|+||++|+..... ..+..+.+..|+.....+++.+.+..    +...||++|.. +....  ..++    +..-.
T Consensus        84 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~----E~~~~  159 (342)
T 2hrz_A           84 EARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIP----DEFHT  159 (342)
T ss_dssp             HTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBC----TTCCC
T ss_pred             hcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcC----CCCCC
Confidence             4899999999864210 01234556789999999999988764    23455555421 11000  0000    00001


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccce-EEEccC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV-PVVGGH  222 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~h  222 (270)
                      .+...++.++....++...+++..+++...++. .|+|..
T Consensus       160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~p  199 (342)
T 2hrz_A          160 TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRP  199 (342)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecC
Confidence            133446667777777777777776776655654 566633

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.69  E-value=6.5e-08  Score=87.07  Aligned_cols=168  Identities=16%  Similarity=0.086  Sum_probs=99.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--------hHHHHhhccccCcceee----eeccCCHHHHhC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--------GVTADISHMDTNAVVRG----FLGQQQLEDALT  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--------~~~~dl~~~~~~~~~~~----i~~t~d~~~al~  113 (270)
                      .|||.|+||+|++|++++..|+..|+  +|+++|+....        ....++.... ...+..    +....+++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~   78 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFK   78 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHH
Confidence            46999999999999999999999998  99999975321        1112222100 011111    111123455666


Q ss_pred             --CCCEEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcH--HHHHHHHHHhCCCCC-
Q 024248          114 --GMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKKVGTYDP-  185 (270)
Q Consensus       114 --~ADvVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~--~i~t~~~~~~sg~p~-  185 (270)
                        ++|+||++|+.....  ..+..+++..|+.....+++.+++.... .||++|.. +....  ..++    +.....+ 
T Consensus        79 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~----E~~~~~p~  153 (348)
T 1ek6_A           79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLD----EAHPTGGC  153 (348)
T ss_dssp             HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBC----TTSCCCCC
T ss_pred             hcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCCCCCcC----CCCCCCCC
Confidence              899999999854210  0123456788999999999998875433 45555421 11000  0000    0001112 


Q ss_pred             CCeeeechhhHHHHHHHHHHHhC--CCCCccc-eEEEccC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLG--LDPREVD-VPVVGGH  222 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~--v~~~~v~-~~V~G~h  222 (270)
                      ...++.++....++...+++. +  ++...++ +.++|.+
T Consensus       154 ~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~  192 (348)
T 1ek6_A          154 TNPYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAH  192 (348)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCC
T ss_pred             CCchHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCC
Confidence            344666777777777777777 5  6666665 5888874

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.69  E-value=4.1e-08  Score=86.43  Aligned_cols=163  Identities=13%  Similarity=0.047  Sum_probs=96.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC--CCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~--ADvVIi~a  122 (270)
                      +.|||.|+||+|++|++++..|+..|..........   .....|+.+.            .++++++++  +|+||++|
T Consensus         5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~---~~~~~D~~d~------------~~~~~~~~~~~~d~Vih~A   69 (319)
T 4b8w_A            5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFV---SSKDADLTDT------------AQTRALFEKVQPTHVIHLA   69 (319)
T ss_dssp             CCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEEC---CTTTCCTTSH------------HHHHHHHHHSCCSEEEECC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhcCCccccccccc---CceecccCCH------------HHHHHHHhhcCCCEEEECc
Confidence            457999999999999999999999886100000000   0011233221            134566665  99999999


Q ss_pred             CCCCC---CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcH--HHHHHHHHHhCCCCCCC-eeeechhh
Q 024248          123 GVPRK---PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTV--PIAAEVFKKVGTYDPKR-LLGVTMLD  195 (270)
Q Consensus       123 g~~~~---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~--~i~t~~~~~~sg~p~~k-viG~t~ld  195 (270)
                      +....   ...+..+.+..|+....++++.+++.... .+|++|.. +....  ..+++-........+.. .++.++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~  148 (319)
T 4b8w_A           70 AMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRM  148 (319)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHHHHHHH
T ss_pred             eecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCccccccccCCCCCCcchHHHHHHH
Confidence            86421   11234467789999999999999887544 45544421 11000  00000000000011122 36667777


Q ss_pred             HHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          196 VVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       196 t~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ..++...+++..+++..-++ +.|+|...
T Consensus       149 ~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~  177 (319)
T 4b8w_A          149 IDVQNRAYFQQYGCTFTAVIPTNVFGPHD  177 (319)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHhhCCCEEEEeeccccCCCC
Confidence            88888888888898877775 48999654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.68  E-value=3.2e-07  Score=86.81  Aligned_cols=121  Identities=18%  Similarity=0.187  Sum_probs=77.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccc----------------cCcceeeeeccCCHH
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLE  109 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~----------------~~~~~~~i~~t~d~~  109 (270)
                      ..+|+|||. |+||..+|..|+..|+  +|+.+|+++.+  +..|....                ...+   +..|+|++
T Consensus        21 m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~k--V~~ln~G~~pi~Epgl~ell~~~~~~g~---l~~tt~~~   92 (444)
T 3vtf_A           21 MASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSI--VERLRAGRPHIYEPGLEEALGRALSSGR---LSFAESAE   92 (444)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTC---EEECSSHH
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHCCCCCCCCCCHHHHHHHHHHcCC---eeEEcCHH
Confidence            348999997 9999999999999999  99999998532  11122110                0112   34578888


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCc-hhhhHHhhHHHHHHHHHHHhHhCCCCEEEE-ecCCCCCcHHHHHHHH
Q 024248          110 DALTGMDIVIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPIAAEVF  177 (270)
Q Consensus       110 ~al~~ADvVIi~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~sNPv~~~~~i~t~~~  177 (270)
                      +++++||++|+++++|.+.+.. .+.++.   ...+.+++.++..++..+|++ .|-|+.+.-.++...+
T Consensus        93 ~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~---~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l  159 (444)
T 3vtf_A           93 EAVAATDATFIAVGTPPAPDGSADLRYVE---AAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAV  159 (444)
T ss_dssp             HHHHTSSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHH
T ss_pred             HHHhcCCceEEEecCCCCCCCCCCcHHHH---HHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHH
Confidence            9999999999999998654432 122222   334556666665455555554 3566665333333333

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.68  E-value=1.3e-07  Score=89.26  Aligned_cols=122  Identities=16%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccc----------eeeeeccCCHHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAV----------VRGFLGQQQLEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~----------~~~i~~t~d~~~al~  113 (270)
                      |||+|||+ |+||..++..|+..|+  +|+++|+++...  ..+.....   .+.          ...+..+++++++++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~~--~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~   75 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKI--DLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence            79999997 9999999999999999  999999975321  11221100   000          001344678888899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CC---CCEEEEe-cCCCCCcHHHHHHHHHH
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CP---KAIVNLI-SNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p---~a~viv~-sNPv~~~~~i~t~~~~~  179 (270)
                      +||+||++++.+..... .     .++..+.++++.+.+. .+   +.+|+.. |+|.......+...+.+
T Consensus        76 ~aDvviiaVptp~~~~~-~-----~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           76 DSDVSFICVGTPSKKNG-D-----LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             TCSEEEECCCCCBCTTS-S-----BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             cCCEEEEEcCCCcccCC-C-----cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            99999999987653222 1     1234445555665553 35   5666655 57776422234444443

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.67  E-value=1.3e-07  Score=90.31  Aligned_cols=127  Identities=17%  Similarity=0.254  Sum_probs=78.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCChhHHHHhhcccc---Ccce---------eeeeccCCHHHH
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDT---NAVV---------RGFLGQQQLEDA  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~~---------~~i~~t~d~~~a  111 (270)
                      .|||+|||+ |+||..+|..|+..  |+  +|+++|+++.+  +..+.....   .+.+         ..+..++|++++
T Consensus         9 ~mkI~VIG~-G~vG~~~A~~La~~g~g~--~V~~~D~~~~~--v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~   83 (481)
T 2o3j_A            9 VSKVVCVGA-GYVGGPTCAMIAHKCPHI--TVTVVDMNTAK--IAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKA   83 (481)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHH
Confidence            479999998 99999999999987  56  99999997532  222221100   0000         013346788888


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEe-cCCCCCcHHHHHHHHHH
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLI-SNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~-sNPv~~~~~i~t~~~~~  179 (270)
                      +++||+||++++.+.+.+.++.+ ...++..+.++++.+.++.+ +.+|+.. |+|.... ..+...+.+
T Consensus        84 ~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~-~~l~~~l~~  151 (481)
T 2o3j_A           84 IAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAA-ESIGCILRE  151 (481)
T ss_dssp             HHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH-HHHHHHHHH
T ss_pred             hhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHH-HHHHHHHHH
Confidence            99999999999887543322111 12234556677777777664 4555543 5776642 234444443

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.67  E-value=4e-08  Score=85.60  Aligned_cols=158  Identities=16%  Similarity=0.176  Sum_probs=91.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      +||.|+||+|++|++++..|+..|+  +|++++++......... .. ....   +....+++++++++|+||++++...
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~-~~-~~~D---l~d~~~~~~~~~~~d~vi~~a~~~~   75 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAAEAHE-EI-VACD---LADAQAVHDLVKDCDGIIHLGGVSV   75 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCCCTTE-EE-CCCC---TTCHHHHHHHHTTCSEEEECCSCCS
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCccccCCCc-cE-EEcc---CCCHHHHHHHHcCCCEEEECCcCCC
Confidence            3899999999999999999999987  99999997532100000 00 0000   1111235677899999999998652


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHH
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE  205 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~  205 (270)
                        ..+....+..|+.....+++.+.+... ..|+++|.. +....+ -...+.+.....+...++.++....++.+.+++
T Consensus        76 --~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~iv~~SS~~~~~~~~-~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~  151 (267)
T 3ay3_A           76 --ERPWNDILQANIIGAYNLYEAARNLGK-PRIVFASSNHTIGYYP-RTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYH  151 (267)
T ss_dssp             --CCCHHHHHHHTHHHHHHHHHHHHHTTC-CEEEEEEEGGGSTTSB-TTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHhCC-CEEEEeCCHHHhCCCC-CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence              223445678899999999999987543 345555421 110000 000000000111223455566655566666666


Q ss_pred             HhCCCCCccc
Q 024248          206 VLGLDPREVD  215 (270)
Q Consensus       206 ~l~v~~~~v~  215 (270)
                      ..|++...++
T Consensus       152 ~~gi~~~~lr  161 (267)
T 3ay3_A          152 KFDIETLNIR  161 (267)
T ss_dssp             TTCCCEEEEE
T ss_pred             HcCCCEEEEe
Confidence            6666555554

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.67  E-value=1.7e-08  Score=91.91  Aligned_cols=163  Identities=17%  Similarity=0.166  Sum_probs=100.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhH--HHHhhccccCcceee----eeccCCHHHHhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGV--TADISHMDTNAVVRG----FLGQQQLEDALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADvV  118 (270)
                      .|+|.|+||+|++|++++..|+.. |. .+|+++++++....  ..++..    ..+..    +....+++++++++|+|
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D~V   95 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVDIC   95 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCCEE
Confidence            358999999999999999999887 74 38999999753211  112211    11111    11112355678999999


Q ss_pred             EEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhH
Q 024248          119 IIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV  196 (270)
Q Consensus       119 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt  196 (270)
                      |++|+....+.  ....+.+..|+....++++.+.+... ..|+++|.-.               .+.+...+|.++...
T Consensus        96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v-~~~V~~SS~~---------------~~~p~~~Y~~sK~~~  159 (344)
T 2gn4_A           96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAI-SQVIALSTDK---------------AANPINLYGATKLCS  159 (344)
T ss_dssp             EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTC-SEEEEECCGG---------------GSSCCSHHHHHHHHH
T ss_pred             EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEecCCc---------------cCCCccHHHHHHHHH
Confidence            99998653111  12346778999999999999987653 3455555211               122334566666666


Q ss_pred             HHHHHHHHHH---hCCCCCccc-eEEEccCCCCceeecc
Q 024248          197 VRANTFVAEV---LGLDPREVD-VPVVGGHAGVTILPLL  231 (270)
Q Consensus       197 ~r~~~~lA~~---l~v~~~~v~-~~V~G~hg~~~~vp~~  231 (270)
                      .++...+++.   .|++...++ +.|+|..+.  .+|.|
T Consensus       160 E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~--~i~~~  196 (344)
T 2gn4_A          160 DKLFVSANNFKGSSQTQFSVVRYGNVVGSRGS--VVPFF  196 (344)
T ss_dssp             HHHHHHGGGCCCSSCCEEEEECCCEETTCTTS--HHHHH
T ss_pred             HHHHHHHHHHhCCCCcEEEEEEeccEECCCCC--HHHHH
Confidence            6665555543   245444453 478886642  44544

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.64  E-value=2.7e-08  Score=87.27  Aligned_cols=97  Identities=21%  Similarity=0.212  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi~ag  123 (270)
                      +|||.|+||+|++|++++..|+.+|+  +|+++++.+     .|+.+.            .+++++++  ++|+||++|+
T Consensus         5 ~m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d~------------~~~~~~~~~~~~d~vi~~a~   65 (287)
T 3sc6_A            5 KERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITNI------------SQVQQVVQEIRPHIIIHCAA   65 (287)
T ss_dssp             CEEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTCH------------HHHHHHHHHHCCSEEEECCC
T ss_pred             eeEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCCH------------HHHHHHHHhcCCCEEEECCc
Confidence            46899999999999999999999998  999999842     233322            13445565  7999999998


Q ss_pred             CCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ......  .+..+.+..|+.....+++.+++...  .++++|
T Consensus        66 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           66 YTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            653111  23456778899999999999988764  455554

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.63  E-value=1.6e-07  Score=87.71  Aligned_cols=111  Identities=17%  Similarity=0.248  Sum_probs=71.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccc--------eeeeeccCCHHHHhCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAV--------VRGFLGQQQLEDALTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~--------~~~i~~t~d~~~al~~A  115 (270)
                      |||+|||+ |+||..++..|++ |+  +|+++|+++..  +..+.....   .+.        -..+..++++++++++|
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~a   74 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSK--VDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEA   74 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHC
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHH--HHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCC
Confidence            79999998 9999999999998 87  99999997532  112221110   000        00123456787889999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEE-ecCCCCC
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNS  168 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~sNPv~~  168 (270)
                      |+||++...+.+.+..+.|     +..+.++++.+.+..|+.+|+. .|||.+.
T Consensus        75 Dvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~  123 (402)
T 1dlj_A           75 ELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGF  123 (402)
T ss_dssp             SEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTH
T ss_pred             CEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccH
Confidence            9999998766322222222     2344555555555456777666 6899883

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=98.63  E-value=1.5e-07  Score=84.52  Aligned_cols=171  Identities=18%  Similarity=0.164  Sum_probs=97.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhcc-ccCcc-ee-eeeccCCHHHHhC--CCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM-DTNAV-VR-GFLGQQQLEDALT--GMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~-~~~~~-~~-~i~~t~d~~~al~--~ADvVI  119 (270)
                      |||.|+||+|++|++++..|+.+|+  +|+++|+...  ......+... ..... +. .+....+++++++  ++|+||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi   78 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI   78 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence            7999999999999999999999998  9999987432  1111112110 00000 00 0111112444554  599999


Q ss_pred             EcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCC-CCCCeeeechhh
Q 024248          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTY-DPKRLLGVTMLD  195 (270)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~-p~~kviG~t~ld  195 (270)
                      ++||.....  .....+++..|+.....+++.+++.... .|+++|.. +.....  ...+.+.... |....++.++..
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~--~~~~~e~~~~~~~~~~Y~~sK~~  155 (338)
T 1udb_A           79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDNP--KIPYVESFPTGTPQSPYGKSKLM  155 (338)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCC--SSSBCTTSCCCCCSSHHHHHHHH
T ss_pred             ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEccHHHhCCCC--CCCcCcccCCCCCCChHHHHHHH
Confidence            999854210  0123356788999999999998876543 45544421 110000  0000000011 123456667777


Q ss_pred             HHHHHHHHHHHh-CCCCCccc-eEEEccC
Q 024248          196 VVRANTFVAEVL-GLDPREVD-VPVVGGH  222 (270)
Q Consensus       196 t~r~~~~lA~~l-~v~~~~v~-~~V~G~h  222 (270)
                      ..++...+++.. +++...++ +.++|.|
T Consensus       156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~  184 (338)
T 1udb_A          156 VEQILTDLQKAQPDWSIALLRYFNPVGAH  184 (338)
T ss_dssp             HHHHHHHHHHHSTTCEEEEEEECEEECCC
T ss_pred             HHHHHHHHHHhcCCCceEEEeeceecCCC
Confidence            777877787775 66655555 3788865

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.63  E-value=4.8e-07  Score=85.73  Aligned_cols=123  Identities=15%  Similarity=0.134  Sum_probs=80.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccce----------eeeeccCCHHHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAVV----------RGFLGQQQLEDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~~----------~~i~~t~d~~~al  112 (270)
                      +.+|+|||+ |++|..+|..|+..|+  +|+++|+++++..  .+.....   .+.+          ..+..|+|+++++
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv~--~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKIE--LLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHH--HHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence            459999997 9999999999999999  9999999875322  2222100   0110          1134578998999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec-CCCCCcHHHHHHHHHH
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS-NPVNSTVPIAAEVFKK  179 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s-NPv~~~~~i~t~~~~~  179 (270)
                      ++||+||++.++|.+.+..     .-++..++++++.+.++. ++.+++..| -|..+ +.-+.+.+.+
T Consensus        83 ~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt-t~~l~~~l~e  145 (446)
T 4a7p_A           83 KDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGT-GDEVERIIAE  145 (446)
T ss_dssp             TTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTH-HHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchH-HHHHHHHHHH
Confidence            9999999999887543111     123456677777777665 456666554 34442 2334444443

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.63  E-value=3.7e-08  Score=86.64  Aligned_cols=100  Identities=21%  Similarity=0.189  Sum_probs=72.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVII  120 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi  120 (270)
                      +.+.+||+|+||+|++|++++..|+.+|+  +|++++++.     .|+.+.            .+++++++  ++|+||+
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d~------------~~~~~~~~~~~~d~vih   69 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNV------------LAVNKFFNEKKPNVVIN   69 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCH------------HHHHHHHHHHCCSEEEE
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCCH------------HHHHHHHHhcCCCEEEE
Confidence            45567999999999999999999999998  999999852     233322            13455666  7999999


Q ss_pred             cCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       121 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +|+.....  ..+..+.+..|+.....+++.+.+...  .++++|
T Consensus        70 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           70 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            99864210  012345678899999999999988653  555554

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.63  E-value=1.1e-07  Score=78.71  Aligned_cols=108  Identities=14%  Similarity=0.109  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      .|||.|+||+|++|++++..|+.+|+  +|+++++++....  ++.........-.+....+++++++++|+||+++|..
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLP--SEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSC--SSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhcc--cccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            37999999999999999999999998  9999999753210  0101000000000111124567789999999999865


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....     ....|+.....+++.+++.... .++++|
T Consensus        79 ~~~~-----~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           79 NDLS-----PTTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             TCCS-----CCCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             CCCC-----ccchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            3211     1246788889999999876543 455554

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.63  E-value=7.1e-08  Score=85.74  Aligned_cols=102  Identities=16%  Similarity=0.134  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHHhCC--CCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~al~~--ADvVIi~  121 (270)
                      .|||.|+||+|++|++++..|+.+|+  +|+++|++....  ...|+.+            ..++++++++  +|+||++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~Dl~d------------~~~~~~~~~~~~~d~vih~   67 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARPKFEQVNLLD------------SNAVHHIIHDFQPHVIVHC   67 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC------------------------------CHHHHHHHCCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCCCeEEecCCC------------HHHHHHHHHhhCCCEEEEC
Confidence            46999999999999999999999998  999999754321  1122222            1234556664  8999999


Q ss_pred             CCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          122 AGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       122 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ||.....  ..+..+.+..|+.....+++.+.+..  ..++++|
T Consensus        68 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~v~~S  109 (315)
T 2ydy_A           68 AAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG--AFLIYIS  109 (315)
T ss_dssp             C-------------------CHHHHHHHHHHHHHT--CEEEEEE
T ss_pred             CcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            9864321  12234567789999999999998765  3565555

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.63  E-value=4.9e-08  Score=92.77  Aligned_cols=102  Identities=14%  Similarity=0.204  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH-----H-Hhhcccc------CcceeeeeccCCHHHHhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----A-DISHMDT------NAVVRGFLGQQQLEDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~-----~-dl~~~~~------~~~~~~i~~t~d~~~al~~  114 (270)
                      +||+|||+ |.+|+.+|..++..|+  +|+++|++++++..     + .+.....      ...+..+..++|+ +++++
T Consensus        55 ~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~  130 (460)
T 3k6j_A           55 NSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSN  130 (460)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTT
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHcc
Confidence            68999998 9999999999999999  99999998652211     1 1111100      0011123446788 57999


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCC
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNS  168 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~  168 (270)
                      ||+||.++.              ++..+.+++++.+.++++ ++++  +||.+..
T Consensus       131 aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIl--asnTSsl  169 (460)
T 3k6j_A          131 CDLIVESVI--------------EDMKLKKELFANLENICKSTCIF--GTNTSSL  169 (460)
T ss_dssp             CSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             CCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEE--EecCCCh
Confidence            999999862              235667788888888774 5655  5666554

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.62  E-value=6.4e-08  Score=88.34  Aligned_cols=172  Identities=10%  Similarity=-0.030  Sum_probs=99.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccc---cCcceeee----eccCCHHHHhCC--
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMD---TNAVVRGF----LGQQQLEDALTG--  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~---~~~~~~~i----~~t~d~~~al~~--  114 (270)
                      ++|.|+||+|++|++++..|+..|+  +|+++|++....   ...++....   ....+..+    ....++++++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999999998  999999875321   111111000   00111111    111224455664  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCC--CEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCee
Q 024248          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPK--AIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       115 ADvVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~--a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      .|+||++||.....  ..+..+.+..|+.....+++.+.+....  ..||++|.. +.....  ...+.+.....+...+
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~--~~~~~E~~~~~~~~~Y  180 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ--EIPQKETTPFYPRSPY  180 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS--SSSBCTTSCCCCCSHH
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCC--CCCCCccCCCCCCChh
Confidence            59999999864211  0123446678999999999999876531  456655532 110000  0000011112233456


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      +.++....++...+++.++++...++ ..++|..
T Consensus       181 ~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~  214 (375)
T 1t2a_A          181 GAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  214 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEecccccCCC
Confidence            77777777888888888888765554 3566654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.61  E-value=1.3e-07  Score=90.80  Aligned_cols=104  Identities=18%  Similarity=0.154  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      +|||+|+||+|++|++++..|+..|+  +|++++++......   ...+         ....+.+++.++|+||++|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~~---v~~d---------~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPGK---RFWD---------PLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTTC---EECC---------TTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCccc---eeec---------ccchhHHhcCCCCEEEECCCCc
Confidence            68999999999999999999999999  99999997642210   0111         0112346788999999999864


Q ss_pred             CCC---CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          126 RKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       126 ~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ...   .....+++..|+....++++.+.+...-..||++|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            211   12234567889999999999855444333555554

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=98.61  E-value=3.6e-08  Score=87.65  Aligned_cols=163  Identities=17%  Similarity=0.231  Sum_probs=98.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEEcCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAG  123 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi~ag  123 (270)
                      ||.|+||+|++|++++..|+..  |+  +|+++|+.........+...+       +....+++++++  ++|+||++|+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~D-------~~d~~~~~~~~~~~~~d~vih~a~   71 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTGGIKFITLD-------VSNRDEIDRAVEKYSIDAIFHLAG   71 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCTTCCEEECC-------TTCHHHHHHHHHHTTCCEEEECCC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCccccCceEEEec-------CCCHHHHHHHHhhcCCcEEEECCc
Confidence            5899999999999999999887  67  899999865321100000000       111123455666  8999999997


Q ss_pred             CCCCCC-CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHH
Q 024248          124 VPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (270)
Q Consensus       124 ~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~  201 (270)
                      ...... .+..+.+..|+.....+++.+.+.... .++++|. -+..... -.....+..-..+...++.++....++..
T Consensus        72 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~-~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~  149 (317)
T 3ajr_A           72 ILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPET-PKNKVPSITITRPRTMFGVTKIAAELLGQ  149 (317)
T ss_dssp             CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTS-CSSSBCSSSCCCCCSHHHHHHHHHHHHHH
T ss_pred             ccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCC-CCCCccccccCCCCchHHHHHHHHHHHHH
Confidence            542111 123456788999999999999876433 4554442 1211000 00000000011133456777777777777


Q ss_pred             HHHHHhCCCCCccc-eEEEcc
Q 024248          202 FVAEVLGLDPREVD-VPVVGG  221 (270)
Q Consensus       202 ~lA~~l~v~~~~v~-~~V~G~  221 (270)
                      .+++..|++...++ ..++|.
T Consensus       150 ~~~~~~~~~~~~lR~~~~~g~  170 (317)
T 3ajr_A          150 YYYEKFGLDVRSLRYPGIISY  170 (317)
T ss_dssp             HHHHHHCCEEEEEEECEEECS
T ss_pred             HHHHhcCCeEEEEecCcEecc
Confidence            78888898877776 688885

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.59  E-value=5.9e-08  Score=81.25  Aligned_cols=147  Identities=10%  Similarity=0.030  Sum_probs=90.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh------HHHHhhccccCcceeeeeccCCHHHHhCCCCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------VTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~------~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvV  118 (270)
                      +.|||.|+||+|++|+.++..|+.+|...+|+++++++...      ...|+.+            ..++++++  +|+|
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~------------~~~~~~~~--~d~v   69 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAE------------LLPQLDGS--IDTA   69 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHH------------HGGGCCSC--CSEE
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccC------------HHHHHHhh--hcEE
Confidence            34699999999999999999999998755899999875420      0011111            11222333  8999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHH
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r  198 (270)
                      |+++|.......+..+++..|+.....+++.+.+.... .++++|.....              .++...++.++....+
T Consensus        70 i~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~--------------~~~~~~y~~sK~~~e~  134 (215)
T 2a35_A           70 FCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGAD--------------AKSSIFYNRVKGELEQ  134 (215)
T ss_dssp             EECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCC--------------TTCSSHHHHHHHHHHH
T ss_pred             EECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECCcccC--------------CCCccHHHHHHHHHHH
Confidence            99998643211234566788999999999999876433 45555532210              0122234444443322


Q ss_pred             HHHHHHHHhCCC-CCccc-eEEEccCCC
Q 024248          199 ANTFVAEVLGLD-PREVD-VPVVGGHAG  224 (270)
Q Consensus       199 ~~~~lA~~l~v~-~~~v~-~~V~G~hg~  224 (270)
                          +.+.++++ ...++ +.++|+...
T Consensus       135 ----~~~~~~~~~~~~vrp~~v~g~~~~  158 (215)
T 2a35_A          135 ----ALQEQGWPQLTIARPSLLFGPREE  158 (215)
T ss_dssp             ----HHTTSCCSEEEEEECCSEESTTSC
T ss_pred             ----HHHHcCCCeEEEEeCceeeCCCCc
Confidence                23345776 55554 478887644

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.58  E-value=3.4e-07  Score=81.85  Aligned_cols=102  Identities=16%  Similarity=0.191  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH-----HH----hhccccC-c----------ceeeeeccC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----AD----ISHMDTN-A----------VVRGFLGQQ  106 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~-----~d----l~~~~~~-~----------~~~~i~~t~  106 (270)
                      +||+|||+ |.+|+.+|..|+..|+  +|+++|++++....     .+    +...... .          ....+..++
T Consensus        16 ~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~   92 (302)
T 1f0y_A           16 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   92 (302)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEec
Confidence            48999998 9999999999999998  99999998532110     00    0000000 0          011133456


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCC
Q 024248          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVN  167 (270)
Q Consensus       107 d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~  167 (270)
                      |+++++++||+||+++.              .+....+++++.+.+..+ ++++  +||...
T Consensus        93 ~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~  138 (302)
T 1f0y_A           93 DAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSS  138 (302)
T ss_dssp             CHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSS
T ss_pred             CHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCC
Confidence            88778999999999862              123445667777877664 5654  455444

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.57  E-value=5.9e-08  Score=85.47  Aligned_cols=99  Identities=16%  Similarity=0.167  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC--CCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~--ADvVIi~ag~  124 (270)
                      |||.|+||+|++|++++..|+ +|+  +|++++++.. ....|+.+.            .++++++++  +|+||++++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~-~~~~D~~d~------------~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK-EFCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS-SSCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc-cccccCCCH------------HHHHHHHHhcCCCEEEECccc
Confidence            799999999999999999999 788  9999998652 111223221            135566765  9999999986


Q ss_pred             CCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       125 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....  ..+..+.+..|+....++++.+++...  .++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            4210  123445678899999999999987543  555554

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.57  E-value=1.3e-07  Score=80.91  Aligned_cols=115  Identities=20%  Similarity=0.163  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      .|+|.|+||+|++|.+++..|+.+|...+|++++++............  ....-.+....+++++++++|+||+++|..
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~--~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV--NQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC--EEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCc--eEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            468999999999999999999998876689999997632110000000  000000112234667788999999999864


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      .. ..+..+++..|+.....+++.+.+... ..|+++|.
T Consensus        96 ~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~iv~~SS  132 (242)
T 2bka_A           96 RG-KAGAEGFVRVDRDYVLKSAELAKAGGC-KHFNLLSS  132 (242)
T ss_dssp             HH-HHHHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             cc-cCCcccceeeeHHHHHHHHHHHHHCCC-CEEEEEcc
Confidence            21 112345667888899999999887543 35555553

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=98.57  E-value=5.3e-08  Score=89.06  Aligned_cols=171  Identities=11%  Similarity=-0.044  Sum_probs=97.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccc--cCc-ceeeee----ccCCHHHHhCC--
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMD--TNA-VVRGFL----GQQQLEDALTG--  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~--~~~-~~~~i~----~t~d~~~al~~--  114 (270)
                      ++|.|+||+|++|++++..|+..|+  +|++++++....   ....+....  ... .+..+.    ...++++++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            3899999999999999999999998  999999875321   011111000  000 111111    11124455665  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCC----CCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCC
Q 024248          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP----KAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       115 ADvVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p----~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      .|+||++|+.....  ..+....+..|+.....+++.+.+...    .+.||++|.. +....   ...+.+....++..
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~---~~~~~E~~~~~~~~  183 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST---PPPQSETTPFHPRS  183 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS---CSSBCTTSCCCCCS
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCC---CCCCCCCCCCCCCC
Confidence            59999999864211  012334567888889999998887542    3466666532 11000   00000111123344


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .+|.++....++...+++.++++...+. +.++|..
T Consensus       184 ~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~  219 (381)
T 1n7h_A          184 PYAASKCAAHWYTVNYREAYGLFACNGILFNHESPR  219 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             chHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCC
Confidence            5677777777787888888887654432 3566643

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.55  E-value=4.7e-07  Score=81.82  Aligned_cols=69  Identities=20%  Similarity=0.278  Sum_probs=52.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ..+.|||+|||+ |.+|..++..|+..|+  +|+++|++++.  ...+....       +..++++++++++||+||++.
T Consensus        28 ~~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~l~~~g-------~~~~~~~~e~~~~aDvVi~~v   95 (320)
T 4dll_A           28 DPYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPAR--AASLAALG-------ATIHEQARAAARDADIVVSML   95 (320)
T ss_dssp             -CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTT-------CEEESSHHHHHTTCSEEEECC
T ss_pred             ccCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHHH--HHHHHHCC-------CEeeCCHHHHHhcCCEEEEEC
Confidence            345689999997 9999999999999999  99999997532  22333221       123457889999999999987


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      .
T Consensus        96 p   96 (320)
T 4dll_A           96 E   96 (320)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.55  E-value=5e-07  Score=86.30  Aligned_cols=118  Identities=16%  Similarity=0.130  Sum_probs=75.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCC--hhHHHHhhcccc-----Ccc----------eeeeecc
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDT-----NAV----------VRGFLGQ  105 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~--~~~~~dl~~~~~-----~~~----------~~~i~~t  105 (270)
                      .+.|||+|||+ |++|..+|..|+.. |+. +|+++|+++.  .+.+..+.....     .+.          ...+..|
T Consensus        16 ~~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~t   93 (478)
T 3g79_A           16 GPIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECT   93 (478)
T ss_dssp             CSCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEe
Confidence            34579999998 99999999999999 874 8999999875  123333433210     000          1123456


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec-CCCCC
Q 024248          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS-NPVNS  168 (270)
Q Consensus       106 ~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s-NPv~~  168 (270)
                      +| .+++++||+||++++.+...+.++    ..++..+...++.+.++. |+.+|++.| -|..+
T Consensus        94 td-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgt  153 (478)
T 3g79_A           94 PD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGT  153 (478)
T ss_dssp             SC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTT
T ss_pred             Cc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHH
Confidence            67 578999999999998875433210    023455566666776655 455555544 44443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.54  E-value=3.4e-07  Score=82.23  Aligned_cols=100  Identities=19%  Similarity=0.174  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      +.+-+||+|||+ |.+|+.+|..|+ .|+  +|+++|++++.. ...+.. .  ...+..+..++++++ +++||+||.+
T Consensus         9 ~~~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l-~--~~~~~~i~~~~~~~~-~~~aDlViea   80 (293)
T 1zej_A            9 HHHHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQI-P--EELLSKIEFTTTLEK-VKDCDIVMEA   80 (293)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHS-C--GGGGGGEEEESSCTT-GGGCSEEEEC
T ss_pred             ccCCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHH-H--HHHhCCeEEeCCHHH-HcCCCEEEEc
Confidence            445569999998 999999999999 999  999999986421 111110 0  011111233557754 8999999998


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      ..              ++..+.+.+...+... |++++  +||.+.
T Consensus        81 vp--------------e~~~vk~~l~~~l~~~-~~~Il--asntSt  109 (293)
T 1zej_A           81 VF--------------EDLNTKVEVLREVERL-TNAPL--CSNTSV  109 (293)
T ss_dssp             CC--------------SCHHHHHHHHHHHHTT-CCSCE--EECCSS
T ss_pred             Cc--------------CCHHHHHHHHHHHhcC-CCCEE--EEECCC
Confidence            62              2345556666777777 88876  455444

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=98.53  E-value=1.1e-07  Score=79.26  Aligned_cols=135  Identities=13%  Similarity=0.104  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh---CCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL---TGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al---~~ADvVIi~  121 (270)
                      .+|||.|+||+|++|..++..|+ +|.  +|+++|++.. ....|+.+.            .++++++   ...|+||++
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~~d~vi~~   65 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITNI------------DSIKKMYEQVGKVDAIVSA   65 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTCH------------HHHHHHHHHHCCEEEEEEC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCCH------------HHHHHHHHHhCCCCEEEEC
Confidence            45799999999999999999999 898  9999998753 111233222            1223333   358999999


Q ss_pred             CCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechh
Q 024248          122 AGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (270)
Q Consensus       122 ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~l  194 (270)
                      +|......   .+   ....+..|+.....+++.+.+... .+.++++|.....            .+.+..-.++.++.
T Consensus        66 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~~~Y~~sK~  133 (202)
T 3d7l_A           66 TGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMME------------DPIVQGASAAMANG  133 (202)
T ss_dssp             CCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGT------------SCCTTCHHHHHHHH
T ss_pred             CCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhc------------CCCCccHHHHHHHH
Confidence            98643211   11   123456788888888888776532 2566666543210            12333334555555


Q ss_pred             hHHHHHHHHHHHh
Q 024248          195 DVVRANTFVAEVL  207 (270)
Q Consensus       195 dt~r~~~~lA~~l  207 (270)
                      ....+-+.+++.+
T Consensus       134 ~~~~~~~~~~~e~  146 (202)
T 3d7l_A          134 AVTAFAKSAAIEM  146 (202)
T ss_dssp             HHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHc
Confidence            4455556666554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.53  E-value=3.3e-07  Score=80.50  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      |||+|+||+|++|++++..|+.. |.  +|++++++....  .++.........-.+....+++++++++|+||++++..
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII   76 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            79999999999999999998887 77  999999875321  11111100000000111224677899999999998754


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ..        ...|+...+++++.+++.... .|+++|
T Consensus        77 ~~--------~~~~~~~~~~l~~aa~~~gv~-~iv~~S  105 (289)
T 3e48_A           77 HP--------SFKRIPEVENLVYAAKQSGVA-HIIFIG  105 (289)
T ss_dssp             CS--------HHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cc--------chhhHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            21        134778889999999876544 444443

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=98.52  E-value=6.6e-07  Score=88.69  Aligned_cols=175  Identities=15%  Similarity=0.073  Sum_probs=100.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhcc-ccCcc-ee-eeeccCCHHHHhC--CCCE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHM-DTNAV-VR-GFLGQQQLEDALT--GMDI  117 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~-~~~~~-~~-~i~~t~d~~~al~--~ADv  117 (270)
                      +.|+|+|+||+|++|++++..|+.+|+  +|+++|+....  ....++... ..... +. .+....+++++++  ++|+
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~   87 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDS   87 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCE
Confidence            356899999999999999999999998  99999986531  111112110 00000 10 0111123455666  8999


Q ss_pred             EEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcHHHHH--HHHHHhCCCCCCCeeeec
Q 024248          118 VIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTVPIAA--EVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       118 VIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~~i~t--~~~~~~sg~p~~kviG~t  192 (270)
                      ||++|+......  ....+++..|+.....+++.+++.... .||++|. -+.....-..  .-+.+.....+...++.+
T Consensus        88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~s  166 (699)
T 1z45_A           88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHT  166 (699)
T ss_dssp             EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHH
T ss_pred             EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECcHHHhCCCccccccCCccccCCCCCCChHHHH
Confidence            999998642110  112356788999999999999876543 4444442 1110000000  000000011123346667


Q ss_pred             hhhHHHHHHHHHHH--hCCCCCccc-eEEEccC
Q 024248          193 MLDVVRANTFVAEV--LGLDPREVD-VPVVGGH  222 (270)
Q Consensus       193 ~ldt~r~~~~lA~~--l~v~~~~v~-~~V~G~h  222 (270)
                      +....++...+++.  .+++..-++ +.++|.+
T Consensus       167 K~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~  199 (699)
T 1z45_A          167 KYAIENILNDLYNSDKKSWKFAILRYFNPIGAH  199 (699)
T ss_dssp             HHHHHHHHHHHHHHSTTSCEEEEEEECEEECCC
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEEeccccCCC
Confidence            77777777777776  577666665 4788864

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.50  E-value=2.8e-07  Score=82.87  Aligned_cols=111  Identities=15%  Similarity=0.042  Sum_probs=71.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhCC--CCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALTG--MDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~--ADvV  118 (270)
                      +.|||+|+||+|++|++++..|+..|+  +|+++|++..... ..+...   ..+..    +....++++++++  +|+|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGRR-EHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDAV   93 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccch-hhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence            346899999999999999999999998  9999998753110 011110   11111    1111234566777  9999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      |++||..........+ +..|+.....+++.+.+... ..||++|
T Consensus        94 ih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~S  136 (333)
T 2q1w_A           94 VHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNV-GRFVYFQ  136 (333)
T ss_dssp             EECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTC-SEEEEEE
T ss_pred             EECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCC-CEEEEEC
Confidence            9999865321111223 67899999999999987543 3555554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.48  E-value=3.8e-07  Score=77.08  Aligned_cols=97  Identities=21%  Similarity=0.274  Sum_probs=64.0

Q ss_pred             Ce-EEEEcCCCchHHHHHHHHH-hCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhCCCCEEEE
Q 024248           47 FK-VAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        47 mK-I~IIGa~G~VGs~la~~l~-~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADvVIi  120 (270)
                      || |.|+||+|++|..++..|+ ..|+  +|+++++++.. ...++...  ...+..    +....+++++++++|+||+
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIID--HERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHT--STTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccC--CCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            45 9999999999999999999 8998  99999997430 11222101  011111    1112245678899999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ++|..             |+. .+.+++.+++.... .||++|
T Consensus        80 ~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iS  107 (221)
T 3r6d_A           80 GAMES-------------GSD-MASIVKALSRXNIR-RVIGVS  107 (221)
T ss_dssp             SCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEe
Confidence            98743             334 78888888875433 455444

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.46  E-value=1.4e-06  Score=82.81  Aligned_cols=101  Identities=15%  Similarity=0.159  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HHH--------------hhccccCcceeeeeccCCHHH
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TAD--------------ISHMDTNAVVRGFLGQQQLED  110 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~d--------------l~~~~~~~~~~~i~~t~d~~~  110 (270)
                      .+||+|||+ |.+|+.+|..|+..|+  +|+++|++++... ..+              +...........+  ++++ +
T Consensus        37 ~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i--~~~~-~  110 (463)
T 1zcj_A           37 VSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF--SSST-K  110 (463)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE--ESCG-G
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh--cCCH-H
Confidence            458999998 9999999999999999  9999999863110 000              0000001111112  5677 6


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCC
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNS  168 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~  168 (270)
                      ++++||+||+++.              ++..+.+++++.+.+.++ +++|  +||.+..
T Consensus       111 ~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~  153 (463)
T 1zcj_A          111 ELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSAL  153 (463)
T ss_dssp             GGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred             HHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCc
Confidence            7999999999972              134556677777877774 5655  4566664

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.46  E-value=6.8e-07  Score=76.22  Aligned_cols=113  Identities=15%  Similarity=0.112  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.|+|.|+||+|++|++++..|++.  |+  +|++++++...  ..++... .....-.+....+++++++++|+||+++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~--~~~~~~~-~~~~~~D~~d~~~~~~~~~~~d~vi~~a   77 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQG--KEKIGGE-ADVFIGDITDADSINPAFQGIDALVILT   77 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHH--HHHTTCC-TTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCc--hhhcCCC-eeEEEecCCCHHHHHHHHcCCCEEEEec
Confidence            3468999999999999999999998  67  99999986422  1122110 0000000111224667789999999999


Q ss_pred             CCCCC------------CCCc---hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          123 GVPRK------------PGMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       123 g~~~~------------~g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      |....            +...   ..+.+..|+.....+++.+++... ..|+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~iv~~S  132 (253)
T 1xq6_A           78 SAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV-KHIVVVG  132 (253)
T ss_dssp             CCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTC-SEEEEEE
T ss_pred             cccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCC-CEEEEEc
Confidence            85421            1100   012457888999999999987654 3455554

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=98.45  E-value=4.1e-07  Score=89.79  Aligned_cols=168  Identities=14%  Similarity=0.074  Sum_probs=102.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHHHHhhccccCcceeeeec--cC--C-HHHHhCCCCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--QQ--Q-LEDALTGMDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~--t~--d-~~~al~~ADvV  118 (270)
                      +.|+|.|+||+|++|++++..|+.. |+  +|+++|++.....  .+...   ..+..+..  ++  + ++++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~~--~~~~~---~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS--RFLNH---PHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTTG--GGTTC---TTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhhh--hhccC---CceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            3468999999999999999999987 77  9999998753211  11111   11111110  11  1 44567899999


Q ss_pred             EEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCC----C---CCCCe
Q 024248          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGT----Y---DPKRL  188 (270)
Q Consensus       119 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg----~---p~~kv  188 (270)
                      |++|+.....  ..+..+.+..|+....++++.+.+..  ..++++|.. +.....  ...+.+...    .   ++...
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS~~vyg~~~--~~~~~E~~~~~~~~p~~~p~~~  462 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCS--DKYFDEDHSNLIVGPVNKPRWI  462 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBTCC--SSSBCTTTCCEEECCTTCTTHH
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEecHHHcCCCC--CcccCCCccccccCcccCCCCC
Confidence            9999864311  01234567789999999999998765  556666532 110000  000000000    0   11224


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +|.++....++...+++..|++...++ +.|+|...
T Consensus       463 Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~  498 (660)
T 1z7e_A          463 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL  498 (660)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCc
Confidence            666777777787778888898887776 48888653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.44  E-value=7.8e-07  Score=78.12  Aligned_cols=163  Identities=16%  Similarity=0.161  Sum_probs=91.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-------  112 (270)
                      .++|.|+||+|++|..++..|+.+|.  +|+++|++....  ...++........+..+. .-+|   +++++       
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999998  999999975321  112222111001111110 1112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      .+.|+||.+||......   .+   ....+..|+..    .+.+++.+++... .+.|+++|.....          ...
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~----------~~~  179 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH----------RVL  179 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT----------SCC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhc----------ccC
Confidence            37999999998653211   11   23356677766    6777888876553 4667766643221          000


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ..+..-.++.++.....+.+.++..+...+..+++.++-
T Consensus       180 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~  218 (279)
T 1xg5_A          180 PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCIS  218 (279)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEe
Confidence            122222345555444556677777765334456554443

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=98.44  E-value=4.3e-07  Score=82.01  Aligned_cols=101  Identities=15%  Similarity=0.201  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-----CccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCC---CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTG---MD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g-----~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~---AD  116 (270)
                      .|||.|+||+|++|++++..|+.+|     +  +|+++|++.....   +.... ...+. .+....++++++++   +|
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~~~-~~~~~~Dl~d~~~~~~~~~~~~~~d   74 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HEDNP-INYVQCDISDPDDSQAKLSPLTDVT   74 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCSSC-CEEEECCTTSHHHHHHHHTTCTTCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---cccCc-eEEEEeecCCHHHHHHHHhcCCCCC
Confidence            3689999999999999999999888     7  9999999754211   11000 00000 01111235567888   99


Q ss_pred             EEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC
Q 024248          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP  155 (270)
Q Consensus       117 vVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p  155 (270)
                      +||++|+...   .+..+++..|+....++++.+.+.++
T Consensus        75 ~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           75 HVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             EEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             EEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            9999998652   23456778999999999999998743

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=98.44  E-value=4.1e-07  Score=79.56  Aligned_cols=104  Identities=12%  Similarity=0.133  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||.|+||+|++|++++..|+..  |+  +|++++++.....  ++.........-.+....+++++++++|+||++++.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            58999999999999999999988  87  9999999754322  121110000000011122466788999999999875


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .  .+    +  ..|+....++++.+++.... .++++|
T Consensus        77 ~--~~----~--~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           77 H--YD----N--TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             C--SC----H--HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             C--cC----c--hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            3  11    1  35788889999999875433 455444

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.43  E-value=3.4e-07  Score=91.69  Aligned_cols=102  Identities=20%  Similarity=0.275  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-H----HHh----hcccc------CcceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-T----ADI----SHMDT------NAVVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~----~dl----~~~~~------~~~~~~i~~t~d~~~a  111 (270)
                      +||+|||+ |.+|+.+|..++..|+  +|+++|++++... .    .+.    .....      ......+..++|+ ++
T Consensus       313 ~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~  388 (725)
T 2wtb_A          313 KKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ES  388 (725)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GG
T ss_pred             cEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HH
Confidence            58999998 9999999999999999  9999999863111 0    111    00000      0011123345677 68


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCC
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNS  168 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~  168 (270)
                      +++||+||+++.              ++..+.+++++.+.++++ ++++  +||.+..
T Consensus       389 ~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl  430 (725)
T 2wtb_A          389 FRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL--ASNTSTI  430 (725)
T ss_dssp             GTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred             HCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EeCCCCC
Confidence            999999999962              234556777788888775 5543  6776654

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=98.43  E-value=1.5e-06  Score=80.98  Aligned_cols=168  Identities=13%  Similarity=0.051  Sum_probs=97.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH-----HHhhcc-------ccCcceee----eeccCCH
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHM-------DTNAVVRG----FLGQQQL  108 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~-----~dl~~~-------~~~~~~~~----i~~t~d~  108 (270)
                      +.|+|.|+||+|++|+.++..|+..|.  +|++++++......     ..+...       .....+..    +....++
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            346899999999999999999988887  99999998652111     111100       00011111    1111223


Q ss_pred             HHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCC-------cHHHHHHHHHHh
Q 024248          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNS-------TVPIAAEVFKKV  180 (270)
Q Consensus       109 ~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~-------~~~i~t~~~~~~  180 (270)
                      . ++.++|+||++|+..... .+..+.+..|+.....+++.+.+  ....|+++|. -+..       .. .++    +.
T Consensus       146 ~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~G~~~~~~~~~~-~~~----E~  216 (427)
T 4f6c_A          146 V-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISVGTYFDIDTEDV-TFS----EA  216 (427)
T ss_dssp             C-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGGGSEECSSCSCC-EEC----TT
T ss_pred             C-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHhCCCccCCCCCc-ccc----cc
Confidence            2 567999999999865322 23445678899999999999988  3345555542 1200       00 000    00


Q ss_pred             CC---CCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCCC
Q 024248          181 GT---YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       181 sg---~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      .-   .++...++.++....++...+++ .|++...++ +.|+|..+.
T Consensus       217 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~  263 (427)
T 4f6c_A          217 DVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNG  263 (427)
T ss_dssp             CSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSS
T ss_pred             ccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCC
Confidence            00   11334466677766667666654 688777775 489997654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.43  E-value=7.9e-07  Score=78.70  Aligned_cols=185  Identities=13%  Similarity=0.075  Sum_probs=87.7

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhcccc
Q 024248           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT   95 (270)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~   95 (270)
                      |+|+++.--....-+|+.+........+.+++.|+||+|.+|..++..|++.|.  +|+++|+++...  ...++.....
T Consensus         5 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~   82 (281)
T 4dry_A            5 HHHSSGVDLGTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTG   82 (281)
T ss_dssp             -----------------------------CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccceEEEeccccccCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC
Confidence            667776666666667776654432223445799999999999999999999998  999999975321  1222221100


Q ss_pred             Cc-c-ee-eeeccCCHHHH-------hCCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHH----HHHHHHHHhHhC
Q 024248           96 NA-V-VR-GFLGQQQLEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCC  154 (270)
Q Consensus        96 ~~-~-~~-~i~~t~d~~~a-------l~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~  154 (270)
                      .. . +. .+....+++++       +...|++|.+||.....+    .+   ....+..|+..    .+.+.+.+.+..
T Consensus        83 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~  162 (281)
T 4dry_A           83 NIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQT  162 (281)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSS
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence            00 0 00 01111112222       346799999998753211    11   22345666655    455555555443


Q ss_pred             -CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEE
Q 024248          155 -PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (270)
Q Consensus       155 -p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V  218 (270)
                       ..+.||++|.-...            .+.+..-.++.++..-..+-+.+|.+++  +..|++.+
T Consensus       163 ~~~g~IV~isS~~~~------------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~  213 (281)
T 4dry_A          163 PRGGRIINNGSISAQ------------TPRPNSAPYTATKHAITGLTKSTALDGR--MHDIACGQ  213 (281)
T ss_dssp             SCCEEEEEECCGGGT------------CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             CCCcEEEEECCHHhC------------CCCCCChhHHHHHHHHHHHHHHHHHHhc--ccCeEEEE
Confidence             24677777643221            1234344466665555567778888864  33454433

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.43  E-value=1.4e-06  Score=74.63  Aligned_cols=102  Identities=19%  Similarity=0.185  Sum_probs=70.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceeeeeccCCHHHHh----CCCCEEEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFLGQQQLEDAL----TGMDIVII  120 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~i~~t~d~~~al----~~ADvVIi  120 (270)
                      +|+|+||+|++|.+++..|+.+|+  +|+++|++....   ...|+.+.            .++++++    .+.|+||+
T Consensus         3 ~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~d~vi~   68 (255)
T 2dkn_A            3 VIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRE------------TAVAAVLDRCGGVLDGLVC   68 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHHHHTTCCSEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccH------------HHHHHHHHHcCCCccEEEE
Confidence            799999999999999999999998  999999975421   12233322            1233344    38999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecC
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sN  164 (270)
                      +||.... .......+..|+.....+++.+.+.   .....++++|.
T Consensus        69 ~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           69 CAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             CCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             CCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            9987542 2234556788888888888877654   22356666653

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=98.41  E-value=2e-06  Score=78.51  Aligned_cols=148  Identities=16%  Similarity=0.061  Sum_probs=88.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeee-----eccCCHHHHhCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF-----LGQQQLEDALTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i-----~~t~d~~~al~~ADvVIi  120 (270)
                      +|||.|+||+|++|++++..|+.+|+  +|++++++.......++...   ..+..+     ....+++++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhc---CCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            56899999999999999999999998  99999987653322233221   011111     111236677899999998


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHH
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~  200 (270)
                      +++...   .      ..|... +++++.+++...-..||++|.....          .. +.++...++.++....++ 
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~----------~~-~~~~~~~y~~sK~~~E~~-  137 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQHYIYSSMPDHS----------LY-GPWPAVPMWAPKFTVENY-  137 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCSEEEEEECCCGG----------GT-SSCCCCTTTHHHHHHHHH-
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCccEEEEeCCcccc----------cc-CCCCCccHHHHHHHHHHH-
Confidence            875431   1      234444 8888888876512355656543310          00 112223344455544333 


Q ss_pred             HHHHHHhCCCCCccceEEEccCC
Q 024248          201 TFVAEVLGLDPREVDVPVVGGHA  223 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~~~V~G~hg  223 (270)
                         .+.++++..-++..++|+..
T Consensus       138 ---~~~~gi~~~ivrpg~~g~~~  157 (352)
T 1xgk_A          138 ---VRQLGLPSTFVYAGIYNNNF  157 (352)
T ss_dssp             ---HHTSSSCEEEEEECEEGGGC
T ss_pred             ---HHHcCCCEEEEecceecCCc
Confidence               34458877777777888653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.41  E-value=7.1e-07  Score=80.71  Aligned_cols=99  Identities=15%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCc--cEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~--~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.|||+|||+ |.+|+.++..|+..|+.  .+|+++|+++.......+....    +   ..+++..+++++||+||++.
T Consensus        21 ~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G----~---~~~~~~~e~~~~aDvVilav   92 (322)
T 2izz_A           21 QSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG----V---KLTPHNKETVQHSDVLFLAV   92 (322)
T ss_dssp             -CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT----C---EEESCHHHHHHHCSEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC----C---EEeCChHHHhccCCEEEEEe
Confidence            3479999998 99999999999998821  2899999976411222232211    1   12346778889999999997


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      . +               ..+.++++.+.... |+.+|+.++|.+.
T Consensus        93 ~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~  122 (322)
T 2izz_A           93 K-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVT  122 (322)
T ss_dssp             C-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred             C-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence            3 1               01244555666544 5777777778766

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.41  E-value=8.9e-07  Score=84.70  Aligned_cols=102  Identities=23%  Similarity=0.372  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HH----H-hhccccCc---------ceeeeeccCCHHHH
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TA----D-ISHMDTNA---------VVRGFLGQQQLEDA  111 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~----d-l~~~~~~~---------~~~~i~~t~d~~~a  111 (270)
                      +||+|||+ |.+|+.+|..++..|+  +|+++|++++... ..    . +.......         .+..+..++|+ ++
T Consensus         6 ~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   81 (483)
T 3mog_A            6 QTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HA   81 (483)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GG
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HH
Confidence            58999998 9999999999999999  9999999864211 10    1 11100000         01123346677 57


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCC
Q 024248          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNS  168 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~  168 (270)
                      +++||+||+++.              ++..+.+++++.+.+.++ ++++  +||.+..
T Consensus        82 ~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntSti  123 (483)
T 3mog_A           82 LAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTLL--TTNTSSI  123 (483)
T ss_dssp             GGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred             hcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcEE--EecCCCC
Confidence            999999999862              234566777888888774 5554  4565554

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=98.40  E-value=1.3e-06  Score=77.00  Aligned_cols=179  Identities=11%  Similarity=0.068  Sum_probs=88.5

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhcccc
Q 024248           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT   95 (270)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~   95 (270)
                      |-|.+++.-     .-++.+++.-...+.+.+.|+||+|.+|..++..|+++|.  +|+++|++....  ...++... .
T Consensus         5 ~~~~~~~~~-----~~~~~~~~~m~~~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-~   76 (272)
T 4dyv_A            5 HHHSSGVDL-----GTENLYFQSMSKTGKKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGDD-A   76 (272)
T ss_dssp             ----------------------------CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTSC-C
T ss_pred             ccccccccC-----CcceeehhhhcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC-e
Confidence            556666643     3333333321122334688999999999999999999998  999999975321  11222110 0


Q ss_pred             Cccee-eeeccCCHHHH-------hCCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHH----HHHHHHHHhHhCC-
Q 024248           96 NAVVR-GFLGQQQLEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCCP-  155 (270)
Q Consensus        96 ~~~~~-~i~~t~d~~~a-------l~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p-  155 (270)
                       ..+. .+....+++++       +...|++|.+||.....+    .+   ....+..|+..    ++.+++.+.+..+ 
T Consensus        77 -~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~  155 (272)
T 4dyv_A           77 -LCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPR  155 (272)
T ss_dssp             -EEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSC
T ss_pred             -EEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC
Confidence             0000 01111122222       338999999998743211    11   23345667665    4445555554332 


Q ss_pred             CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          156 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       156 ~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .+.||++|.....            .+.|..-.++.++.....+-+.+|..++-  ..|++.++
T Consensus       156 ~g~IV~isS~~~~------------~~~~~~~~Y~asKaa~~~l~~~la~e~~~--~gI~vn~v  205 (272)
T 4dyv_A          156 GGRIINNGSISAT------------SPRPYSAPYTATKHAITGLTKSTSLDGRV--HDIACGQI  205 (272)
T ss_dssp             CEEEEEECCSSTT------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGG--GTEEEEEE
T ss_pred             CcEEEEECchhhc------------CCCCCchHHHHHHHHHHHHHHHHHHHhCc--cCEEEEEE
Confidence            4677777654331            12343344666655556677788888743  34544333

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.39  E-value=5.8e-07  Score=79.36  Aligned_cols=108  Identities=16%  Similarity=0.058  Sum_probs=70.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +|+|.|+||+|++|++++..|+..| +  +|++++++........+..... ..+. .+....+++++++++|+||++++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~~-~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQGA-EVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCCC-EEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            3689999999999999999998887 7  9999999765322222322110 0000 01112246678999999999986


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .....      ....|+...+++++.+++.... .|++.|
T Consensus        82 ~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           82 YWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             HHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             CCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            42110      1345677888999998876533 444444

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.39  E-value=1.3e-07  Score=83.10  Aligned_cols=99  Identities=13%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh------HHHHhhccccCcceeeeeccCCHHHHhCC-CCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------VTADISHMDTNAVVRGFLGQQQLEDALTG-MDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~------~~~dl~~~~~~~~~~~i~~t~d~~~al~~-ADvV  118 (270)
                      .|||.|+|+ |++|++++..|+.+|+  +|++++++....      ...|+.+            ..++++++++ +|+|
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~Dl~d------------~~~~~~~~~~~~d~v   67 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQPMPAGVQTLIADVTR------------PDTLASIVHLRPEIL   67 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSCCCTTCCEEECCTTC------------GGGCTTGGGGCCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccccccCCceEEccCCC------------hHHHHHhhcCCCCEE
Confidence            469999995 9999999999999998  999999975321      0112211            1234456666 9999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      |++|+...   .+..++...|+.....+++.+++... ..++++|
T Consensus        68 ih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~-~~~v~~S  108 (286)
T 3gpi_A           68 VYCVAASE---YSDEHYRLSYVEGLRNTLSALEGAPL-QHVFFVS  108 (286)
T ss_dssp             EECHHHHH---HC-----CCSHHHHHHHHHHTTTSCC-CEEEEEE
T ss_pred             EEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCC-CEEEEEc
Confidence            99987532   12234567799999999999986443 3455444

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.37  E-value=8.2e-07  Score=77.16  Aligned_cols=100  Identities=18%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hH----------HHHhhccccCcceeeeeccCCHHH
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV----------TADISHMDTNAVVRGFLGQQQLED  110 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~----------~~dl~~~~~~~~~~~i~~t~d~~~  110 (270)
                      ....|||+|||+ |.+|..++..|+..|+  +|+++|++++.  ..          ..++...  ....    ...+.++
T Consensus        16 ~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~e   86 (245)
T 3dtt_A           16 YFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPE--HPHV----HLAAFAD   86 (245)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGG--STTC----EEEEHHH
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhh--cCce----eccCHHH
Confidence            455689999997 9999999999999998  99999997542  00          1222211  1111    1246778


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCC
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv  166 (270)
                      ++++||+||++....     .    .   .+.+.++.   ....++.+|+.++||.
T Consensus        87 ~~~~aDvVilavp~~-----~----~---~~~~~~i~---~~~l~g~ivi~~s~~~  127 (245)
T 3dtt_A           87 VAAGAELVVNATEGA-----S----S---IAALTAAG---AENLAGKILVDIANPL  127 (245)
T ss_dssp             HHHHCSEEEECSCGG-----G----H---HHHHHHHC---HHHHTTSEEEECCCCE
T ss_pred             HHhcCCEEEEccCcH-----H----H---HHHHHHhh---hhhcCCCEEEECCCCC
Confidence            899999999987321     0    1   12223331   2222778888899876

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=98.36  E-value=3.3e-06  Score=72.15  Aligned_cols=148  Identities=19%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-ee-eeeccCCHHHHhC---CCCEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQLEDALT---GMDIVI  119 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~~-~i~~t~d~~~al~---~ADvVI  119 (270)
                      +.++|.|+||+|++|.+++..|+.+|.  +|+++|++.....  ++........ +. .+....+++++++   ..|+||
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLV--SLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEE
Confidence            346899999999999999999999998  9999999753211  1111000000 00 0111122444454   479999


Q ss_pred             EcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       120 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      ++||......   .+   ....+..|+.....+++.+.+.    ...+.|+++|.....            .+.|..-.+
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~~~Y  149 (244)
T 1cyd_A           82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAH------------VTFPNLITY  149 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT------------SCCTTBHHH
T ss_pred             ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhc------------CCCCCcchh
Confidence            9998643211   11   2235667777765555555443    324567766643221            123333346


Q ss_pred             eechhhHHHHHHHHHHHhC
Q 024248          190 GVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~  208 (270)
                      +.++.....+-+.+++.++
T Consensus       150 ~~sK~a~~~~~~~~a~~~~  168 (244)
T 1cyd_A          150 SSTKGAMTMLTKAMAMELG  168 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            6666666667777888764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.35  E-value=1.4e-06  Score=78.21  Aligned_cols=68  Identities=13%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+.|||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+....       +..++++++++++||+||++..
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~g-------~~~~~~~~~~~~~aDvvi~~vp   86 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCD--ELVEHG-------ASVCESPAEVIKKCKYTIAMLS   86 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT-------CEECSSHHHHHHHCSEEEECCS
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC-------CeEcCCHHHHHHhCCEEEEEcC
Confidence            44579999997 9999999999999999  9999999864322  222211       1224578889999999999873

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.35  E-value=1.6e-06  Score=76.71  Aligned_cols=66  Identities=8%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +|||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+.+..       +..++++++++++||+||++..
T Consensus         1 s~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g-------~~~~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            1 SQKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAE--ELAALG-------AERAATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT-------CEECSSHHHHHHHCSEEEECCS
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC-------CeecCCHHHHHhcCCEEEEEcC
Confidence            379999997 9999999999999998  9999999864322  222211       1234678889999999999863

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=98.35  E-value=3.6e-07  Score=79.22  Aligned_cols=102  Identities=19%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC--CCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~--ADvVIi~ag~  124 (270)
                      |||.|+||+|++|++++..|+. |+  +|++++++....  .. ...+       +....++++++++  +|+||+++|.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~--~~-~~~D-------l~~~~~~~~~~~~~~~d~vi~~a~~   67 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ--GG-YKLD-------LTDFPRLEDFIIKKRPDVIINAAAM   67 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT--TC-EECC-------TTSHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC--CC-ceec-------cCCHHHHHHHHHhcCCCEEEECCcc
Confidence            6899999999999999999984 76  999999875311  00 0000       1111234556665  9999999986


Q ss_pred             CCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       125 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....  ..+..+.+..|+.....+++.+.+..  +.++++|
T Consensus        68 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~S  106 (273)
T 2ggs_A           68 TDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYIVHIS  106 (273)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             cChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEe
Confidence            5311  01234567889999999999998754  3566555

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.34  E-value=8e-07  Score=77.33  Aligned_cols=92  Identities=16%  Similarity=0.212  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCc--cEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~--~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ++.|||+|||+ |.+|+.++..|+..|+.  .+|+++|+++..       ..        +..+++.++++++||+||++
T Consensus         2 m~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~g--------~~~~~~~~~~~~~~D~vi~~   65 (262)
T 2rcy_A            2 MENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------TT--------LNYMSSNEELARHCDIIVCA   65 (262)
T ss_dssp             CSSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------SS--------SEECSCHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------Cc--------eEEeCCHHHHHhcCCEEEEE
Confidence            34689999998 99999999999888821  289999997643       11        11234677888999999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      ....                .+.++++.+..+.++..++..+|.++
T Consensus        66 v~~~----------------~~~~v~~~l~~~l~~~~vv~~~~gi~   95 (262)
T 2rcy_A           66 VKPD----------------IAGSVLNNIKPYLSSKLLISICGGLN   95 (262)
T ss_dssp             SCTT----------------THHHHHHHSGGGCTTCEEEECCSSCC
T ss_pred             eCHH----------------HHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            7311                12445556665557777777788776

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.33  E-value=1.2e-06  Score=73.81  Aligned_cols=99  Identities=19%  Similarity=0.222  Sum_probs=62.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH--HHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~--~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+|+||+|.+|+.++..|+..|+  +|+++|+++.....  .++........+   . .++++++++++|+||+++..
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASI---T-GMKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCE---E-EEEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCC---C-hhhHHHHHhcCCEEEEeCCh
Confidence            7999999559999999999999998  99999997532211  111100000111   1 23677888999999998631


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      .         .       +.++++.+.+..++.+++.++|+.+
T Consensus        75 ~---------~-------~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 E---------H-------AIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             H---------H-------HHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             h---------h-------HHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            1         1       2233334433335778888888655

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=98.33  E-value=4.9e-07  Score=78.42  Aligned_cols=156  Identities=13%  Similarity=0.056  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH----HHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~----~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|++......    .|+.+..   .+..+  .....+.+...|++|.+
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~d~~d~~---~v~~~--~~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNADHSFTIKDSGEE---EIKSV--IEKINSKSIKVDTFVCA   94 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSSEEEECSCSSHH---HHHHH--HHHHHTTTCCEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccccceEEEeCCHH---HHHHH--HHHHHHHcCCCCEEEEC
Confidence            34799999999999999999999998  99999998642111    1111110   00000  00111223356999999


Q ss_pred             CCCCCCC----CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeech
Q 024248          122 AGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (270)
Q Consensus       122 ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~  193 (270)
                      ||.....    ..+   ....+..|+.....+++.+.+.. ..+.||++|.....            .+.+..-.++.++
T Consensus        95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y~~sK  162 (251)
T 3orf_A           95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL------------NRTSGMIAYGATK  162 (251)
T ss_dssp             CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHHHHHH
T ss_pred             CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc------------cCCCCCchhHHHH
Confidence            9864321    111   23456778888888888776653 34567777643321            1334334455665


Q ss_pred             hhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          194 LDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       194 ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .....+-+.+++.++..+..+++.++-
T Consensus       163 aa~~~~~~~la~e~~~~~~gi~v~~v~  189 (251)
T 3orf_A          163 AATHHIIKDLASENGGLPAGSTSLGIL  189 (251)
T ss_dssp             HHHHHHHHHHTSTTSSSCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHhcccCCCcEEEEEe
Confidence            555567777777766446667665554

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.32  E-value=7.6e-06  Score=72.59  Aligned_cols=98  Identities=14%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.|||+|||+ |.+|..++..|+..|+ ..+|+++|+++...  .++...  + .+   ..+++..+++++||+||++..
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~--~~l~~~--~-gi---~~~~~~~~~~~~aDvVilav~   72 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKL--DFFKEK--C-GV---HTTQDNRQGALNADVVVLAVK   72 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHH--HHHHHT--T-CC---EEESCHHHHHSSCSEEEECSC
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHH--HHHHHH--c-CC---EEeCChHHHHhcCCeEEEEeC
Confidence            3579999998 9999999999999886 45899999976432  222221  0 11   224567788999999999871


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHh--CCCCEEEEecCCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~sNPv~  167 (270)
                          +            ..+.++++.+..+  .++.+++.+++.+.
T Consensus        73 ----p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           73 ----P------------HQIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             ----G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             ----H------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence                1            1124455555554  35667765666655

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=98.32  E-value=6.9e-06  Score=70.77  Aligned_cols=143  Identities=14%  Similarity=0.165  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l  112 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++....  ..+..+. .-+|   +++.       +
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  999999975321  122222211  1111110 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCC---C---CCCc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          113 TGMDIVIIPAGVPR---K---PGMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       113 ~~ADvVIi~ag~~~---~---~g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                      ...|++|++||...   .   ...+   ....+..|+..    .+.+.+.+.+. ..+.|+++|....            
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~------------  151 (253)
T 3qiv_A           85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR-GGGAIVNQSSTAA------------  151 (253)
T ss_dssp             SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECC---------------
T ss_pred             CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCEEEEECCccc------------
Confidence            38999999998631   0   0111   23456777776    55566666554 3566776664332            


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                         ++....++.++.....+-+.++..++
T Consensus       152 ---~~~~~~Y~asK~a~~~~~~~la~e~~  177 (253)
T 3qiv_A          152 ---WLYSNYYGLAKVGINGLTQQLSRELG  177 (253)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTT
T ss_pred             ---cCCCchhHHHHHHHHHHHHHHHHHHh
Confidence               12233477776666678888888875

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=98.32  E-value=6.8e-06  Score=72.39  Aligned_cols=186  Identities=16%  Similarity=0.075  Sum_probs=95.1

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhcccc
Q 024248           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT   95 (270)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~   95 (270)
                      |-|+++++--.+..+|+.+.....-..+.+++.|+||+|.+|..++..|++.|.  +|++.|+++...  ...++.....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~   82 (275)
T 4imr_A            5 HHHSSGVDLGTENLYFQSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASGG   82 (275)
T ss_dssp             -------------CCSCTTSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTTC
T ss_pred             cccccccCccccccccccccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC
Confidence            334556655555556655443321133445799999999999999999999998  999999986422  2223322111


Q ss_pred             Ccc-ee-eeeccCCHHHHh------CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCC
Q 024248           96 NAV-VR-GFLGQQQLEDAL------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKA  157 (270)
Q Consensus        96 ~~~-~~-~i~~t~d~~~al------~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a  157 (270)
                      ... +. .+....+.++.+      ...|++|..||......   .+   ....+..|+.....+++.+    .+. ..+
T Consensus        83 ~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g  161 (275)
T 4imr_A           83 TAQELAGDLSEAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWG  161 (275)
T ss_dssp             CEEEEECCTTSTTHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCE
T ss_pred             eEEEEEecCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCc
Confidence            000 00 011111222222      37899999998653221   11   1234566765555554444    433 346


Q ss_pred             EEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       158 ~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .||++|.....            ...+..-.++.++.....+-+.+|..++  +..|++.++-
T Consensus       162 ~Iv~isS~~~~------------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  210 (275)
T 4imr_A          162 RVVSIGSINQL------------RPKSVVTAYAATKAAQHNLIQSQARDFA--GDNVLLNTLA  210 (275)
T ss_dssp             EEEEECCGGGT------------SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             EEEEECCHHhC------------CCCCCchhhHHHHHHHHHHHHHHHHHhc--ccCcEEEEEE
Confidence            67776643221            0122222256666555667788888874  3345554443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.31  E-value=2.1e-06  Score=77.39  Aligned_cols=118  Identities=14%  Similarity=0.127  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHH----hhccccCccee--eeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----ISHMDTNAVVR--GFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~d----l~~~~~~~~~~--~i~~t~d~~~al~~ADvVI  119 (270)
                      +|||+|+|+ |.+|+.++..|+..|+  +|+++|+++. ....+    +... ......  .+..+++.+++.+++|+||
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~-~~i~~~Gl~~~~~-~~g~~~~~~~~~~~~~~~~~~~~DlVi   76 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDY-ETVKAKGIRIRSA-TLGDYTFRPAAVVRSAAELETKPDCTL   76 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTH-HHHHHHCEEEEET-TTCCEEECCSCEESCGGGCSSCCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChH-HHHHhCCcEEeec-CCCcEEEeeeeeECCHHHcCCCCCEEE
Confidence            589999998 9999999999999998  9999999752 11111    1110 011111  1222456655555999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ++.-...-                .++++.++.+. ++..|+.+.|-.+..     +.+.+.  +|.+++++-
T Consensus        77 lavK~~~~----------------~~~l~~l~~~l~~~t~Iv~~~nGi~~~-----~~l~~~--~~~~~vl~g  126 (320)
T 3i83_A           77 LCIKVVEG----------------ADRVGLLRDAVAPDTGIVLISNGIDIE-----PEVAAA--FPDNEVISG  126 (320)
T ss_dssp             ECCCCCTT----------------CCHHHHHTTSCCTTCEEEEECSSSSCS-----HHHHHH--STTSCEEEE
T ss_pred             EecCCCCh----------------HHHHHHHHhhcCCCCEEEEeCCCCChH-----HHHHHH--CCCCcEEEE
Confidence            99743211                12344455443 577888888987632     223343  566677543

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.30  E-value=3.8e-06  Score=74.89  Aligned_cols=65  Identities=20%  Similarity=0.302  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .|||+|||+ |.+|..++..|+..|+  +|+++|+++.....  +....       +..+++++++++ ||+||++..
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~--~~~~g-------~~~~~~~~~~~~-aDvvi~~vp   79 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMTP--LAEAG-------ATLADSVADVAA-ADLIHITVL   79 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSHH--HHHTT-------CEECSSHHHHTT-SSEEEECCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH--HHHCC-------CEEcCCHHHHHh-CCEEEEECC
Confidence            469999997 9999999999999998  99999998653221  22211       123568888888 999999873

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=98.30  E-value=2.6e-06  Score=74.77  Aligned_cols=144  Identities=14%  Similarity=0.050  Sum_probs=85.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHh-------CCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDAL-------TGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al-------~~A  115 (270)
                      ++|.|+||+|++|.+++..|+.+|.  +|++.|++.....  ++.... ...+..    +....++++++       .+.
T Consensus         6 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            6 KVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALD--DLVAAY-PDRAEAISLDVTDGERIDVVAADVLARYGRV   80 (281)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGH--HHHHHC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             cEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhc-cCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence            4799999999999999999999998  9999999754221  111100 001111    11111222233       378


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |+||++||.....   ..+   ....+..|+..    .+.+++.+++.. .+.|+++|.....            .+.+.
T Consensus        81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~------------~~~~~  147 (281)
T 3m1a_A           81 DVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSFGGQ------------LSFAG  147 (281)
T ss_dssp             SEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------CCCTT
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCcccc------------CCCCC
Confidence            9999999864211   111   23356778777    677777666554 4566666643221            13444


Q ss_pred             CCeeeechhhHHHHHHHHHHHhC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .-.++.++.....+-+.++..++
T Consensus       148 ~~~Y~~sK~a~~~~~~~la~e~~  170 (281)
T 3m1a_A          148 FSAYSATKAALEQLSEGLADEVA  170 (281)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh
Confidence            44566666666667777888753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.30  E-value=2.3e-06  Score=81.33  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=72.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCChhHHHHhhcccc---Ccc----e-----eeeeccCCHHHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDT---NAV----V-----RGFLGQQQLEDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~----~-----~~i~~t~d~~~al  112 (270)
                      |||+|||+ |+||..++..|+..  |+  +|+++|+++...  ..+.....   .+.    +     ..+..++++++++
T Consensus         6 mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~~--~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~   80 (467)
T 2q3e_A            6 KKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESRI--NAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAI   80 (467)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHHH--HHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHH
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHHH--HHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHH
Confidence            79999997 99999999999988  67  999999975322  12211100   000    0     0133467888889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEe-cCCCCC
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNS  168 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-sNPv~~  168 (270)
                      ++||+||++.+.+........+ ...++..+.+.++.+.+.. ++.+|+.. |+|...
T Consensus        81 ~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~  137 (467)
T 2q3e_A           81 KEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA  137 (467)
T ss_dssp             HHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred             hcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence            9999999998766432110000 0123455667777777654 45566554 466653

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=98.30  E-value=3e-06  Score=72.72  Aligned_cols=155  Identities=14%  Similarity=0.050  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeee-ccCC---HHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~-~t~d---~~~al-------  112 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|++.....  ..++...   ..+..+. ..+|   +++++       
T Consensus         6 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  9999999753211  1122111   1111110 0112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|+||+++|......   .+   ....+..|+...    +.+++.+++....+.|+++|.....            .+
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~------------~~  148 (251)
T 1zk4_A           81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGF------------VG  148 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGT------------SC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhc------------cC
Confidence            35899999998653211   11   234566777644    4444444433222567766643321            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~  217 (270)
                      .|..-.++.++.....+-+.++..+...+..+++.
T Consensus       149 ~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~  183 (251)
T 1zk4_A          149 DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVN  183 (251)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEE
Confidence            33333455555544556666776665334455443

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=98.30  E-value=2.9e-06  Score=72.88  Aligned_cols=148  Identities=16%  Similarity=0.148  Sum_probs=85.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHhC-----
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDALT-----  113 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al~-----  113 (270)
                      +.++|.|+||+|++|..++..|+.+|.  +|+++|++....  ...++....  ..+..    +....+++++++     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999998  999999975321  122232111  11111    111112333333     


Q ss_pred             --CCCEEEEcCCCCCCC--CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 --GMDIVIIPAGVPRKP--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 --~ADvVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                        +.|+||++||.....  ..+   ....+..|+.....+++.+.+.   .....|+++|.....            .+.
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~  153 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE------------NKN  153 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT------------CCC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc------------CCC
Confidence              899999999864321  111   2345667777766665555422   234566666643221            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ++.-.++.++.....+-+.+++.++
T Consensus       154 ~~~~~Y~~sK~a~~~~~~~~~~~~~  178 (255)
T 1fmc_A          154 INMTSYASSKAAASHLVRNMAFDLG  178 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhh
Confidence            3333456666555667777777763

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.29  E-value=2.1e-06  Score=78.61  Aligned_cols=75  Identities=16%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             CCCCC-eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccc----cCcc--e-eeeeccCCHHHHhCC
Q 024248           43 GSPGF-KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----TNAV--V-RGFLGQQQLEDALTG  114 (270)
Q Consensus        43 ~~~~m-KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~----~~~~--~-~~i~~t~d~~~al~~  114 (270)
                      ..+.| ||+|||+ |.+|+.++..|+..|+  +|+++|+++...  ..+....    ..+.  + ..+..++++++++++
T Consensus        11 ~~m~M~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (366)
T 1evy_A           11 ELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEV--RLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG   85 (366)
T ss_dssp             CCCCEEEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHH--HHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT
T ss_pred             HhhccCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHcCcccccccccccccceeeeCCHHHHHcC
Confidence            45556 9999998 9999999999999898  999999975321  1121110    0000  0 012234678788999


Q ss_pred             CCEEEEcC
Q 024248          115 MDIVIIPA  122 (270)
Q Consensus       115 ADvVIi~a  122 (270)
                      +|+||++.
T Consensus        86 aDvVilav   93 (366)
T 1evy_A           86 AEIILFVI   93 (366)
T ss_dssp             CSSEEECC
T ss_pred             CCEEEECC
Confidence            99999986

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=98.29  E-value=4.1e-06  Score=73.20  Aligned_cols=152  Identities=13%  Similarity=0.031  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeee-ccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~-~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.|||.|+|| |++|++++..|+.+|+  +|++++++.....  .+...    .+..+. .-+|++  ++++|+||++++
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~--~~~~d~vi~~a~   72 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRAS----GAEPLLWPGEEPS--LDGVTHLLISTA   72 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHT----TEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhC----CCeEEEecccccc--cCCCCEEEECCC
Confidence            3479999998 9999999999999998  9999999754321  12111    111111 112343  789999999997


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHH
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sN-Pv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~  201 (270)
                      .....           .+..+.+++.+++.+ .-..+|.+|. .+.....  ...+.+.....+...+|.++....++..
T Consensus        73 ~~~~~-----------~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~--~~~~~E~~~~~p~~~Y~~sK~~~E~~~~  139 (286)
T 3ius_A           73 PDSGG-----------DPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHD--GAWVDETTPLTPTAARGRWRVMAEQQWQ  139 (286)
T ss_dssp             CBTTB-----------CHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCT--TCEECTTSCCCCCSHHHHHHHHHHHHHH
T ss_pred             ccccc-----------cHHHHHHHHHHHhhcCCceEEEEeecceecCCCC--CCCcCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            54221           122356677777632 2234555442 1110000  0000011112223345556555444333


Q ss_pred             HHHHHhCCCCCccc-eEEEccCC
Q 024248          202 FVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       202 ~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      .+   .+++..-++ +.++|+..
T Consensus       140 ~~---~~~~~~ilRp~~v~G~~~  159 (286)
T 3ius_A          140 AV---PNLPLHVFRLAGIYGPGR  159 (286)
T ss_dssp             HS---TTCCEEEEEECEEEBTTB
T ss_pred             hh---cCCCEEEEeccceECCCc
Confidence            22   477777775 58999753

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.28  E-value=1.3e-06  Score=74.69  Aligned_cols=155  Identities=15%  Similarity=0.094  Sum_probs=91.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH------HHHhhccccCcceeeeeccCCHHHHh--CCCCEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------TADISHMDTNAVVRGFLGQQQLEDAL--TGMDIV  118 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~------~~dl~~~~~~~~~~~i~~t~d~~~al--~~ADvV  118 (270)
                      ++|.|+||+|.+|..++..|+.+|.  +|+++|+++....      ..|+.+.+   .+..+  .....+.+  .+.|+|
T Consensus         4 k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~~~g~id~l   76 (236)
T 1ooe_A            4 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNKNWTE---QEQSI--LEQTASSLQGSQVDGV   76 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTSCHHH---HHHHH--HHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCccccccccEEEeCCCCCHH---HHHHH--HHHHHHHhCCCCCCEE
Confidence            4799999999999999999999998  9999999864211      01111110   00000  00111222  478999


Q ss_pred             EEcCCCCCCC----CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          119 IIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       119 Ii~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      |.+||.....    ..+   ....+..|+.....+++.+.+.. ..+.|+++|.....            .+.|..-.++
T Consensus        77 v~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y~  144 (236)
T 1ooe_A           77 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM------------GPTPSMIGYG  144 (236)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHHH
T ss_pred             EECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhc------------cCCCCcHHHH
Confidence            9999864311    111   23456778888777777776643 23567777643321            1233333455


Q ss_pred             echhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .++.....+-+.++..++..+..+++.++-
T Consensus       145 ~sK~a~~~~~~~la~e~~~~~~gi~v~~v~  174 (236)
T 1ooe_A          145 MAKAAVHHLTSSLAAKDSGLPDNSAVLTIM  174 (236)
T ss_dssp             HHHHHHHHHHHHHHSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCeEEEEEe
Confidence            555555567777777775335556554443

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=98.27  E-value=3.1e-06  Score=80.75  Aligned_cols=169  Identities=12%  Similarity=0.015  Sum_probs=96.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH----H-HHhhcc-------ccCcceeeee----ccCCH
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV----T-ADISHM-------DTNAVVRGFL----GQQQL  108 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~----~-~dl~~~-------~~~~~~~~i~----~t~d~  108 (270)
                      ..|+|.|+||+|++|++++..|...|.  +|+++++......    . ..+...       .....+..+.    ...++
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            346899999999999999999987787  9999999765211    0 111100       0011222111    11223


Q ss_pred             HHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCCc------HHHHHHHHHHhC
Q 024248          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNST------VPIAAEVFKKVG  181 (270)
Q Consensus       109 ~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~~------~~i~t~~~~~~s  181 (270)
                      . +..++|+||++|+.... ..+..++...|+...+++++.+.+ . ...++++| .-+...      ...++    +..
T Consensus       227 ~-~~~~~D~Vih~Aa~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~-~-~~~~v~iSS~~vG~~~~~~~~~~~~~----E~~  298 (508)
T 4f6l_B          227 V-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVSTISVGTYFDIDTEDVTFS----EAD  298 (508)
T ss_dssp             C-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T-TCEEEEEEESCTTSEECTTCSCCEEC----TTC
T ss_pred             C-CccCCCEEEECCceecC-CCCHHHHhhhHHHHHHHHHHHHHh-C-CCcEEEeCChhhccCCccCCcCcccc----ccc
Confidence            2 56799999999976421 123345677899999999999987 3 34455444 333000      00000    000


Q ss_pred             C---CCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCCC
Q 024248          182 T---YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       182 g---~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      -   .++...++.++....++...+++ .|++..-++ +.|+|....
T Consensus       299 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~  344 (508)
T 4f6l_B          299 VYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNG  344 (508)
T ss_dssp             SCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSS
T ss_pred             ccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCC
Confidence            0   01234456677777777666554 688777775 488887543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.26  E-value=5.6e-06  Score=74.23  Aligned_cols=67  Identities=16%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.|||+|||. |.+|..++..|+..|+  +|+++|+++...  ..+....       ....+++++++++||+||++..
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~~~~~g-------~~~~~~~~e~~~~aDvVi~~vp   74 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGKA--AALVAAG-------AHLCESVKAALSASPATIFVLL   74 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHH--HHHHHHT-------CEECSSHHHHHHHSSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCC-------CeecCCHHHHHhcCCEEEEEeC
Confidence            3579999997 9999999999999999  999999975322  2222211       1224578889999999999863

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=98.26  E-value=4.7e-06  Score=72.84  Aligned_cols=153  Identities=14%  Similarity=0.059  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-----HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-----~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .++|.|+||+|.+|..++..|+.+|.  +|+++|++...+     ...|+.+.+.   +..+  .....+.+...|++|.
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~~~~~---v~~~--~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGEAKYDHIECDVTNPDQ---VKAS--IDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCSCSSEEEECCTTCHHH---HHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccCCceEEEEecCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            34799999999999999999999998  999999975421     1122222110   0000  0011222347999999


Q ss_pred             cCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          121 PAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       121 ~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      +||......   .+   ....+..|+.....+++.+.+.   ...+.||++|.....            .+.|..-.++.
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y~~  148 (264)
T 2dtx_A           81 NAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQAS------------IITKNASAYVT  148 (264)
T ss_dssp             CCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGT------------SCCTTBHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhc------------cCCCCchhHHH
Confidence            998653211   11   2345667777765555555443   234667777643221            12333334556


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ++.....+-+.++..++-.   +++.++.
T Consensus       149 sK~a~~~~~~~la~e~~~~---i~vn~v~  174 (264)
T 2dtx_A          149 SKHAVIGLTKSIALDYAPL---LRCNAVC  174 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTT---SEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCC---cEEEEEE
Confidence            6655566778888887633   5554444

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.26  E-value=2.1e-06  Score=76.76  Aligned_cols=68  Identities=16%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.|||+|||+ |.+|..++..|+..|+  +|+++|+++..  ...+.....  .    ..++++++++++||+||++..
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~--~----~~~~~~~e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQA--CANLLAEGA--C----GAAASAREFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTTC--S----EEESSSTTTTTTCSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHcCC--c----cccCCHHHHHhcCCEEEEECC
Confidence            3579999997 9999999999999999  99999997532  222322211  0    113466788999999999873

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.26  E-value=6.9e-06  Score=72.77  Aligned_cols=101  Identities=18%  Similarity=0.225  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc----Ccc-e-eeeeccC--CHHHHhCCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----NAV-V-RGFLGQQ--QLEDALTGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~----~~~-~-~~i~~t~--d~~~al~~ADv  117 (270)
                      .|||+|||+ |.+|+.++..|+..|+  +|+++|++++..  ..+.....    ... . ..+..++  +..++++++|+
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAHI--EAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDL   77 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSE
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCE
Confidence            479999998 9999999999999998  999999975321  11211100    000 0 0011111  12223459999


Q ss_pred             EEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      ||++...                ..+.++++.+..+. |+.+++.++|..+
T Consensus        78 vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~  112 (316)
T 2ew2_A           78 IIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLG  112 (316)
T ss_dssp             EEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred             EEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            9998621                11355667777654 5778877888766

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=98.26  E-value=1.4e-05  Score=70.27  Aligned_cols=165  Identities=19%  Similarity=0.219  Sum_probs=92.9

Q ss_pred             ccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCcc-ee-eee
Q 024248           29 ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAV-VR-GFL  103 (270)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~-~~-~i~  103 (270)
                      +..+|+++....  ..+.+++.|+||+|.+|..++..|+..|.  +|++.|.+...   ....++........ +. .+.
T Consensus        16 ~~~~~~~mm~~~--~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~   91 (271)
T 3v2g_A           16 ENLYFQSMMTSI--SLAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNR   91 (271)
T ss_dssp             ----CHHHHTTT--CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             cccchhhhcccc--CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence            444555543221  23345799999999999999999999998  99999876521   11222322111000 00 011


Q ss_pred             ccCCHHHHh-------CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCc
Q 024248          104 GQQQLEDAL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (270)
Q Consensus       104 ~t~d~~~al-------~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~  169 (270)
                      ...++++++       ...|++|.+||......   .+   ....+..|+.....+++.+...- ..+.||+++..... 
T Consensus        92 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~-  170 (271)
T 3v2g_A           92 DAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAE-  170 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGT-
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhc-
Confidence            111222333       37899999998753221   11   23456778877777777776653 35677777643321 


Q ss_pred             HHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          170 VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       170 ~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                                ...+|..-.++.++..-..+-+.+|..++
T Consensus       171 ----------~~~~~~~~~Y~asKaa~~~l~~~la~e~~  199 (271)
T 3v2g_A          171 ----------LVPWPGISLYSASKAALAGLTKGLARDLG  199 (271)
T ss_dssp             ----------CCCSTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----------cCCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence                      11133334466665555667788888874

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=98.26  E-value=7e-06  Score=71.09  Aligned_cols=154  Identities=17%  Similarity=0.152  Sum_probs=88.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhC-------C
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALT-------G  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~-------~  114 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++.......++....  ..+..    +....+++++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999998  999999976522223332211  11111    111112333343       8


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|++|.+||......   .+   ....+..|+.    ..+.+++.+++. ..+.|+++|.....            .+.|
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------~~~~  146 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR-NWGRIINIASVHGL------------VGST  146 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGT------------SCCT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcCchhc------------cCCC
Confidence            999999998653211   11   2234566766    555566666553 34566766643221            1223


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEE
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V  218 (270)
                      ..-.++.++.....+-+.++.++.  +..+++.+
T Consensus       147 ~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~  178 (255)
T 2q2v_A          147 GKAAYVAAKHGVVGLTKVVGLETA--TSNVTCNA  178 (255)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHTT--TSSEEEEE
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhc--ccCcEEEE
Confidence            333345555555567777888764  33454433

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=98.25  E-value=6e-06  Score=71.19  Aligned_cols=146  Identities=15%  Similarity=0.138  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .++|.|+||+|++|..++..|+++|.  +|+++|++....  ...++....  ..+..    +....++++++       
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  999999975321  122232111  11111    11111233333       


Q ss_pred             CCCCEEEEcCCCCCCC----CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|+||++||.....    ..+   ....+..|+.....+++.+.+.   ...+.|+++|.....            .+
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~  156 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGL------------IV  156 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT------------SC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhc------------cc
Confidence            3789999999865311    111   1344667777666666655432   134566666543221            01


Q ss_pred             CCCC--CeeeechhhHHHHHHHHHHHh
Q 024248          183 YDPK--RLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       183 ~p~~--kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .|..  -.++.++.....+.+.+++.+
T Consensus       157 ~~~~~~~~Y~~sK~a~~~~~~~l~~e~  183 (260)
T 3awd_A          157 NRPQQQAAYNASKAGVHQYIRSLAAEW  183 (260)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHh
Confidence            2222  345666655566777777774

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=98.25  E-value=1.3e-06  Score=78.81  Aligned_cols=93  Identities=19%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHH---HHhhccccCccee-eeeccCCHHHHhC--CCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT---ADISHMDTNAVVR-GFLGQQQLEDALT--GMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~---~dl~~~~~~~~~~-~i~~t~d~~~al~--~ADv  117 (270)
                      +|||+|+||+|++|++++..|+..|+  +|++++++..  ....   .++..... ..+. .+....++.++++  ++|+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~~v-~~~~~Dl~d~~~l~~~~~~~~~d~   86 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDKGA-IIVYGLINEQEAMEKILKEHEIDI   86 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHTTC-EEEECCTTCHHHHHHHHHHTTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhCCc-EEEEeecCCHHHHHHHHhhCCCCE
Confidence            46899999999999999999999997  9999999762  1111   12221110 0000 0111224567788  9999


Q ss_pred             EEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC
Q 024248          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (270)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (270)
                      ||++++..             |+....++++.+++..
T Consensus        87 Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           87 VVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             EEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             EEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            99998642             4555678888888775

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.25  E-value=2.5e-06  Score=72.62  Aligned_cols=134  Identities=16%  Similarity=0.138  Sum_probs=82.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-----HHHhhccccCcceeeeeccCCHHHHhC------CC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALT------GM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-----~~dl~~~~~~~~~~~i~~t~d~~~al~------~A  115 (270)
                      ++|.|+||+|++|..++..|+++|.  +|+++|++.. ..     ..|+.+.            .+++++++      ..
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~-~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~~~   67 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE-GEDLIYVEGDVTRE------------EDVRRAVARAQEEAPL   67 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC-SSSSEEEECCTTCH------------HHHHHHHHHHHHHSCE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc-ccceEEEeCCCCCH------------HHHHHHHHHHHhhCCc
Confidence            5899999999999999999999998  9999999754 11     1122211            12333333      78


Q ss_pred             CEEEEcCCCCCCCC------C----chhhhHHhhHHHHHHHHHHHhHhC---C---C---CEEEEecCCCCCcHHHHHHH
Q 024248          116 DIVIIPAGVPRKPG------M----TRDDLFNINAGIVKTLCEGIAKCC---P---K---AIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       116 DvVIi~ag~~~~~g------~----~r~~~~~~N~~i~~~i~~~i~~~~---p---~---a~viv~sNPv~~~~~i~t~~  176 (270)
                      |++|+++|......      .    +..+.+..|+.....+++.+.+..   +   .   +.|+++|....       + 
T Consensus        68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~-------~-  139 (242)
T 1uay_A           68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAA-------F-  139 (242)
T ss_dssp             EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHH-------H-
T ss_pred             eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhh-------c-
Confidence            99999998653211      0    223456677777777776665432   1   1   26766664221       0 


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                        .  +.+..-.++.++.....+-+.++..+
T Consensus       140 --~--~~~~~~~Y~~sK~a~~~~~~~l~~e~  166 (242)
T 1uay_A          140 --E--GQIGQAAYAASKGGVVALTLPAAREL  166 (242)
T ss_dssp             --H--CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --c--CCCCCchhhHHHHHHHHHHHHHHHHH
Confidence              0  23434445666555556667777776

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.25  E-value=7.5e-07  Score=89.07  Aligned_cols=104  Identities=18%  Similarity=0.162  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-----HHH----hhccccC------cceeeeeccCCHH
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TAD----ISHMDTN------AVVRGFLGQQQLE  109 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-----~~d----l~~~~~~------~~~~~i~~t~d~~  109 (270)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|++++...     ..+    +......      .....+..++|+ 
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-  388 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-  388 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-
Confidence            3468999998 9999999999999999  9999999863211     011    1111000      001113345677 


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCC
Q 024248          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNS  168 (270)
Q Consensus       110 ~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~  168 (270)
                      +++++||+||+++.              ++..+.+++++.+.++++ ++++  +||.+..
T Consensus       389 ~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl  432 (715)
T 1wdk_A          389 GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTI  432 (715)
T ss_dssp             TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCC
Confidence            78999999999862              234556777788887774 5544  6666543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.24  E-value=4.8e-06  Score=70.60  Aligned_cols=78  Identities=26%  Similarity=0.349  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...|||+|||+ |.+|+.++..|+..|+  +|+++|+++.                           ++++||+||++..
T Consensus        17 ~~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~   66 (209)
T 2raf_A           17 FQGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP   66 (209)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC
Confidence            34679999997 9999999999999998  9999998643                           3578999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                       +               ..++++++.+....++.+++.++|+.+
T Consensus        67 -~---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 -Y---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             -H---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             -c---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence             1               112344444443334778888889654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=98.24  E-value=5.6e-06  Score=72.25  Aligned_cols=153  Identities=19%  Similarity=0.136  Sum_probs=86.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-------HHHhhccccCcceeeeeccCCHHHHhCCCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-------~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      ++|.|+||+|.+|.+++..|+++|.  +|+++|++.....       ..|+.+.+.   +..+  .....+.+...|++|
T Consensus        29 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~---v~~~--~~~~~~~~g~iD~lv  101 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSADPDIHTVAGDISKPET---ADRI--VREGIERFGRIDSLV  101 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCSSTTEEEEESCTTSHHH---HHHH--HHHHHHHHSCCCEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcccCceEEEEccCCCHHH---HHHH--HHHHHHHCCCCCEEE
Confidence            4799999999999999999999999  9999999753211       112222110   0000  001122334899999


Q ss_pred             EcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       120 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      .+||......   .+   ....+..|+.....+++.+    .+. ..+.|+++|.....          .....++.-.+
T Consensus       102 ~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~----------~~~~~~~~~~Y  170 (260)
T 3un1_A          102 NNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITTSLVD----------QPMVGMPSALA  170 (260)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCTTTT----------SCBTTCCCHHH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEechhhc----------cCCCCCccHHH
Confidence            9998753221   11   2334567776665555554    432 34566666543210          00011222334


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.++.....+-+.+|..++  +..|++.++
T Consensus       171 ~~sKaa~~~l~~~la~e~~--~~gI~vn~v  198 (260)
T 3un1_A          171 SLTKGGLNAVTRSLAMEFS--RSGVRVNAV  198 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhC--cCCeEEEEE
Confidence            5555555667788888874  334544333

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=98.24  E-value=1.8e-06  Score=74.21  Aligned_cols=156  Identities=13%  Similarity=0.035  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH------HHHhhccccCcceeeeeccCCHHHHh--CCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------TADISHMDTNAVVRGFLGQQQLEDAL--TGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~------~~dl~~~~~~~~~~~i~~t~d~~~al--~~ADv  117 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|++.....      ..|+.+.+   .+..+  .....+.+  ...|+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~~~~---~v~~~--~~~~~~~~~~g~iD~   79 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTE---QADQV--TAEVGKLLGDQKVDA   79 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHH---HHHHH--HHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccCCcEEEEcCCCCHH---HHHHH--HHHHHHHhCCCCCCE
Confidence            34799999999999999999999998  9999999764211      01111110   00000  00111222  37899


Q ss_pred             EEEcCCCCCCC----CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          118 VIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       118 VIi~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      +|.+||.....    ..+   ....+..|+.....+++.+.+.. ..+.|+++|.....            .+.|..-.+
T Consensus        80 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y  147 (241)
T 1dhr_A           80 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL------------DGTPGMIGY  147 (241)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHH
T ss_pred             EEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHc------------cCCCCchHH
Confidence            99999864311    111   23346678877777777776543 23567777643221            123333335


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.++.....+-+.++..++..+..+++.++-
T Consensus       148 ~asK~a~~~~~~~la~e~~~~~~gi~v~~v~  178 (241)
T 1dhr_A          148 GMAKGAVHQLCQSLAGKNSGMPSGAAAIAVL  178 (241)
T ss_dssp             HHHHHHHHHHHHHHTSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCeEEEEEe
Confidence            5555544556666776665335556654443

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=98.24  E-value=2.3e-06  Score=73.17  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      .++|.|+||+|++|..++..|+..| +  +|++++++.....  ++.........-.+....+++++++++|+||++++.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~   98 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKIH--KPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG   98 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGSC--SSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhhc--ccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence            3479999999999999999999999 7  9999999753211  111100000000011122466788999999999864


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      .      ..+      ...+.+++.+++... ..||++|.
T Consensus        99 ~------~~~------~~~~~~~~~~~~~~~-~~iV~iSS  125 (236)
T 3qvo_A           99 E------DLD------IQANSVIAAMKACDV-KRLIFVLS  125 (236)
T ss_dssp             T------THH------HHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             C------chh------HHHHHHHHHHHHcCC-CEEEEEec
Confidence            2      111      224567788776543 35555553

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.24  E-value=5.9e-06  Score=78.92  Aligned_cols=102  Identities=8%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC---CCEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVI  119 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~---ADvVI  119 (270)
                      +..++||+|||+ |.+|+.++..|+..|+  +|+++|++++.  +.++........   +..++++++++++   +|+||
T Consensus        12 ~~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~--~~~l~~~~~~~g---i~~~~s~~e~v~~l~~aDvVi   83 (480)
T 2zyd_A           12 HMSKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREK--TEEVIAENPGKK---LVPYYTVKEFVESLETPRRIL   83 (480)
T ss_dssp             ---CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHH--HHHHHHHSTTSC---EEECSSHHHHHHTBCSSCEEE
T ss_pred             ccCCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHhhCCCCC---eEEeCCHHHHHhCCCCCCEEE
Confidence            466789999998 9999999999999998  99999997532  222322100011   2335678787776   99999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      ++...+    .           .+.++++.+.... |+.+||..+|...
T Consensus        84 l~Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~  117 (480)
T 2zyd_A           84 LMVKAG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTFF  117 (480)
T ss_dssp             ECSCSS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             EECCCH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            997332    1           1234455665554 5677877887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.24  E-value=4.9e-06  Score=75.12  Aligned_cols=95  Identities=14%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHH-HhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLED-ALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~-al~~ADvVIi~ag  123 (270)
                      ..|||+|||+ |.+|..++..|+..|+..+|+++|+++.....  +.....   ..  ..++++++ ++++||+||+++.
T Consensus        32 ~~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~--a~~~G~---~~--~~~~~~~~~~~~~aDvVilavp  103 (314)
T 3ggo_A           32 SMQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISK--AVDLGI---ID--EGTTSIAKVEDFSPDFVMLSSP  103 (314)
T ss_dssp             SCSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH--HHHTTS---CS--EEESCTTGGGGGCCSEEEECSC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHH--HHHCCC---cc--hhcCCHHHHhhccCCEEEEeCC
Confidence            3479999997 99999999999999986699999997532111  111100   00  11346667 8999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s  163 (270)
                      ..                .+.++++.+..+. |+++|+.++
T Consensus       104 ~~----------------~~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A          104 VR----------------TFREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             GG----------------GHHHHHHHHHHHSCTTCEEEECC
T ss_pred             HH----------------HHHHHHHHHhhccCCCcEEEECC
Confidence            11                0233445555544 677766554

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.24  E-value=1.8e-06  Score=78.24  Aligned_cols=101  Identities=19%  Similarity=0.199  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc--C-ccee-eeeccCCHHHHhCCCCEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--N-AVVR-GFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~--~-~~~~-~i~~t~d~~~al~~ADvV  118 (270)
                      +..+|||+|||+ |.+|+.++..|+..|+  +|+++|++++..  ..+.....  + +... .+..++++++ ++++|+|
T Consensus        11 ~~~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~~--~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvV   84 (335)
T 1z82_A           11 HHMEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEIV--DLINVSHTSPYVEESKITVRATNDLEE-IKKEDIL   84 (335)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHH--HHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEE
T ss_pred             cccCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHH--HHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEE
Confidence            466889999998 9999999999999998  999999974322  22222110  0 0000 1123456767 8999999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      |++....                .+.++++.+..  ++.++|.++|.++
T Consensus        85 il~vk~~----------------~~~~v~~~l~~--~~~~vv~~~nGi~  115 (335)
T 1z82_A           85 VIAIPVQ----------------YIREHLLRLPV--KPSMVLNLSKGIE  115 (335)
T ss_dssp             EECSCGG----------------GHHHHHTTCSS--CCSEEEECCCCCC
T ss_pred             EEECCHH----------------HHHHHHHHhCc--CCCEEEEEeCCCC
Confidence            9986311                12334444433  6677777887544

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=98.24  E-value=7.3e-06  Score=71.73  Aligned_cols=118  Identities=18%  Similarity=0.181  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-----
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-----  112 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-----  112 (270)
                      .+.++|.|+||+|++|..++..|++.|.  +|+++|++....  ...++....  ..+..+. .-+|   +++++     
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  104 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA  104 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999998  999999975321  112222111  1111110 1112   22222     


Q ss_pred             --CCCCEEEEcCCCCCCCCC------chhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCC
Q 024248          113 --TGMDIVIIPAGVPRKPGM------TRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (270)
Q Consensus       113 --~~ADvVIi~ag~~~~~g~------~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNP  165 (270)
                        .+.|+||.+||.......      +....+..|+.....+++.+.+.   ...+.||++|..
T Consensus       105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  168 (272)
T 1yb1_A          105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASA  168 (272)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEech
Confidence              378999999987532111      11234566776644444444322   234566666644

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.23  E-value=3.4e-06  Score=76.57  Aligned_cols=104  Identities=14%  Similarity=0.201  Sum_probs=67.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-------CccEEEEEeCCCC-----hhHHHHhhccc--cCcc--e-eeeeccCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHMD--TNAV--V-RGFLGQQQ  107 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g-------~~~eV~LvD~~~~-----~~~~~dl~~~~--~~~~--~-~~i~~t~d  107 (270)
                      ..|||+|||+ |.+|+.++..|+..|       +  +|+++|+++.     ......-.+..  ..+.  + ..+..+++
T Consensus         7 ~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
T 1x0v_A            7 ASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPD   83 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcC
Confidence            3479999998 999999999998887       6  9999999865     32221111100  0000  0 01233567


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       108 ~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      +++++++||+||++....                .+.++++.+..+. ++.+++.++|...
T Consensus        84 ~~~~~~~aD~Vilav~~~----------------~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           84 VVQAAEDADILIFVVPHQ----------------FIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHHTTCSEEEECCCGG----------------GHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHHcCCCEEEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            878899999999996210                1355666676654 5777877777543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=98.23  E-value=2.3e-06  Score=74.55  Aligned_cols=101  Identities=12%  Similarity=0.134  Sum_probs=62.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      ||.|+||+|++|++++..|+.+  |+  +|++++++......  +.........-.+....+++++++++|+||++++..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~--~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~   76 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQA--LAAQGITVRQADYGDEAALTSALQGVEKLLLISSSE   76 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCHH--HHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC---
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhhh--hhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            5899999999999999999988  77  99999997643221  111100000000111224667889999999998753


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .          ..|+...+++++.+++.... .++++|
T Consensus        77 ~----------~~~~~~~~~l~~a~~~~~~~-~~v~~S  103 (286)
T 2zcu_A           77 V----------GQRAPQHRNVINAAKAAGVK-FIAYTS  103 (286)
T ss_dssp             ---------------CHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             c----------hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            1          13566778888888876533 444443

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.23  E-value=3.5e-06  Score=75.46  Aligned_cols=91  Identities=12%  Similarity=0.092  Sum_probs=50.4

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCc
Q 024248           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA   97 (270)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~   97 (270)
                      |-|.+++..-++--.|...  +. -....|||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+....   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g---   73 (316)
T 2uyy_A            5 HHHSSGVDLGTENLYFQSM--GS-ITPTDKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG---   73 (316)
T ss_dssp             ----------------------C-CCCCSSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT---
T ss_pred             cccccccCccccceeecCC--CC-CCCCCCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC---
Confidence            6677777765443333211  11 1122479999997 9999999999999998  8999999754322  122211   


Q ss_pred             ceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           98 VVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        98 ~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                       .   ..+.+++++++++|+||++..
T Consensus        74 -~---~~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           74 -A---RLGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             -C---EECSCHHHHHHHCSEEEECCS
T ss_pred             -C---EEcCCHHHHHhcCCEEEEeCC
Confidence             1   123467788899999999873

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.23  E-value=5.3e-06  Score=70.67  Aligned_cols=161  Identities=18%  Similarity=0.126  Sum_probs=85.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC--CccEEEEEeCCCChhHHHHhhccccCcceeeee-ccC---CHHHHhC------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQ---QLEDALT------  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g--~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~-~t~---d~~~al~------  113 (270)
                      .++|.|+||+|++|.+++..|+++|  .  +|+++|++......  +.+. ....+..+. ..+   +++++++      
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~~--l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKATE--LKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCHH--HHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHHH--HHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999  7  99999997542221  1111 011111110 111   2333333      


Q ss_pred             ---CCCEEEEcCCCCC-CC---CCc---hhhhHHhhHHHHHHHHHHHh----Hh------C----CCCEEEEecCCCCCc
Q 024248          114 ---GMDIVIIPAGVPR-KP---GMT---RDDLFNINAGIVKTLCEGIA----KC------C----PKAIVNLISNPVNST  169 (270)
Q Consensus       114 ---~ADvVIi~ag~~~-~~---g~~---r~~~~~~N~~i~~~i~~~i~----~~------~----p~a~viv~sNPv~~~  169 (270)
                         +.|+||++||... ..   ..+   ....+..|+.....+++.+.    +.      .    +.+.|+++|......
T Consensus        78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  157 (250)
T 1yo6_A           78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI  157 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred             CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence               8999999998653 11   111   22345667655555544443    32      2    045677666433210


Q ss_pred             HHHHHHHHHHhCCC-CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          170 VPIAAEVFKKVGTY-DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       170 ~~i~t~~~~~~sg~-p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ..      ...... ++.-.++.++.....+-+.+++.+.  +..+++.++
T Consensus       158 ~~------~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  200 (250)
T 1yo6_A          158 TD------NTSGSAQFPVLAYRMSKAAINMFGRTLAVDLK--DDNVLVVNF  200 (250)
T ss_dssp             TT------CCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEE
T ss_pred             CC------cccccccCCccHHHHHHHHHHHHHHHHHHHhc--cCCeEEEEE
Confidence            00      000000 1222355555555567777888763  333444333

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.23  E-value=6.5e-06  Score=71.53  Aligned_cols=147  Identities=17%  Similarity=0.162  Sum_probs=84.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee-eeeccCCHHHHhC-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR-GFLGQQQLEDALT-------GM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~-~i~~t~d~~~al~-------~A  115 (270)
                      .+++.|+||+|.+|.+++..|+++|.  +|+++|++....  ...++... . ..+. .+....+++++++       +.
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~v~~~~~~~~~~~g~i   83 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGPA-A-YAVQMDVTRQDSIDAAIAATVEHAGGL   83 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTT-E-EEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCC-c-eEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999999999998  999999975322  11222110 0 0000 0111112223333       89


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|++||......   .+   ....+..|+.....+++.    +.+..+.+.|+++|.....            .+.|.
T Consensus        84 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~  151 (259)
T 4e6p_A           84 DILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGR------------RGEAL  151 (259)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT------------SCCTT
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhc------------cCCCC
Confidence            99999998753211   11   223456776655555444    4443345677777643321            12333


Q ss_pred             CCeeeechhhHHHHHHHHHHHhC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .-.++.++.....+-+.++..++
T Consensus       152 ~~~Y~asK~a~~~~~~~la~e~~  174 (259)
T 4e6p_A          152 VAIYCATKAAVISLTQSAGLDLI  174 (259)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhh
Confidence            33456665555667788888874

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=98.23  E-value=9e-06  Score=69.52  Aligned_cols=157  Identities=15%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-eCCCChh--HHHHhhccccCcceee----eeccCCHHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al------  112 (270)
                      .++|.|+||+|++|..++..|+++|.  +|+++ ++++...  ...++....  ..+..    +....++++++      
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  99999 4544321  112222111  11111    11111222333      


Q ss_pred             -CCCCEEEEcCCCCCCC------CCchhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 -TGMDIVIIPAGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                       .+.|+||++||.....      ..+....+..|+.....+.+.+.+.   ...+.|+++|.....    .        +
T Consensus        81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~----~--------~  148 (247)
T 2hq1_A           81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGI----I--------G  148 (247)
T ss_dssp             HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc----c--------C
Confidence             3799999999864311      1123345677877755555554432   234567777654321    0        2


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++.....+-+.+++.++  +..+++.++.
T Consensus       149 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  184 (247)
T 2hq1_A          149 NAGQANYAASKAGLIGFTKSIAKEFA--AKGIYCNAVA  184 (247)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCcHhHHHHHHHHHHHHHHHHHHH--HcCcEEEEEE
Confidence            23333456666555667777888774  3345555554

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=98.23  E-value=8.9e-06  Score=71.55  Aligned_cols=181  Identities=15%  Similarity=0.152  Sum_probs=90.4

Q ss_pred             cCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCc
Q 024248           19 LHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNA   97 (270)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~   97 (270)
                      -|+++..-..+...|+++....  ..+.+++.|+||+|.+|..++..|++.|.  +|+++|+.+. .....++....  .
T Consensus         6 ~~~~~~~~~~~~~~~~~m~~~~--~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~   79 (273)
T 3uf0_A            6 HHSSGVDLGTENLYFQSMTGPF--SLAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGG--G   79 (273)
T ss_dssp             -------------------CTT--CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTT--C
T ss_pred             cccccccccccccchhhccccc--CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcC--C
Confidence            3454544455556666654321  23445899999999999999999999998  9999996532 11222332211  1


Q ss_pred             ceeeee-ccCCH---HH------HhCCCCEEEEcCCCCCCCCC---c---hhhhHHhhHHHHHHHHHHH----hHhCCCC
Q 024248           98 VVRGFL-GQQQL---ED------ALTGMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGI----AKCCPKA  157 (270)
Q Consensus        98 ~~~~i~-~t~d~---~~------al~~ADvVIi~ag~~~~~g~---~---r~~~~~~N~~i~~~i~~~i----~~~~p~a  157 (270)
                      .+..+. ..+|.   ++      .....|++|.+||.......   +   ....+..|+.....+++.+    .+. ..+
T Consensus        80 ~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g  158 (273)
T 3uf0_A           80 SAEAVVADLADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH-GSG  158 (273)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCE
T ss_pred             cEEEEEecCCCHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCC
Confidence            111110 11122   11      12478999999987542211   1   2234567766665555544    433 346


Q ss_pred             EEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       158 ~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .||++|.....            .+.|..-.++.++..-..+-+.+|..++  +..|++.++-
T Consensus       159 ~IV~isS~~~~------------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  207 (273)
T 3uf0_A          159 RIVTIASMLSF------------QGGRNVAAYAASKHAVVGLTRALASEWA--GRGVGVNALA  207 (273)
T ss_dssp             EEEEECCGGGT------------SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             EEEEEcchHhc------------CCCCCChhHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEE
Confidence            67766643321            1233333455665555667788888874  3345544443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.23  E-value=6.6e-06  Score=63.94  Aligned_cols=72  Identities=25%  Similarity=0.284  Sum_probs=45.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeec-cCC---HHH-HhCCCCEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LED-ALTGMDIV  118 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~-t~d---~~~-al~~ADvV  118 (270)
                      ++.|||+|+|+ |.+|..++..|...|+  +|+++|+++...  ..+.... ..  ..+.. .++   +.+ .++++|+|
T Consensus         2 ~~~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~~--~~~~~~~-~~--~~~~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            2 SHGMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDIC--KKASAEI-DA--LVINGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHHHHC-SS--EEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHHhc-Cc--EEEEcCCCCHHHHHHcCcccCCEE
Confidence            34589999998 9999999999999998  999999975321  2222110 00  00111 112   222 26799999


Q ss_pred             EEcCC
Q 024248          119 IIPAG  123 (270)
Q Consensus       119 Ii~ag  123 (270)
                      |++.+
T Consensus        74 i~~~~   78 (140)
T 1lss_A           74 IAVTG   78 (140)
T ss_dssp             EECCS
T ss_pred             EEeeC
Confidence            99963

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=98.22  E-value=6.3e-06  Score=72.05  Aligned_cols=168  Identities=14%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-Chh--HHHHhhccc
Q 024248           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG--VTADISHMD   94 (270)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-~~~--~~~dl~~~~   94 (270)
                      |-|||+..-..+.-.++.+..       .++|.|+||+|.+|..++..|++.|.  +|++.+... ...  ...++... 
T Consensus         5 ~~~~~~~~~~~~n~~~~~m~~-------~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-   74 (272)
T 4e3z_A            5 HHHSSGVDLGTENLYFQSMSD-------TPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITES-   74 (272)
T ss_dssp             -------------------CC-------SCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT-
T ss_pred             cCCCCCCCCCChhhhhhhccC-------CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhc-
Confidence            667777665544444444432       23799999999999999999999998  887774433 211  11222211 


Q ss_pred             cCcceeee----eccCCHHHH-------hCCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh---
Q 024248           95 TNAVVRGF----LGQQQLEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---  153 (270)
Q Consensus        95 ~~~~~~~i----~~t~d~~~a-------l~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---  153 (270)
                       ...+..+    ....+++++       +...|+||.+||.....+    .+   ....+..|+.....+++.+.+.   
T Consensus        75 -~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~  153 (272)
T 4e3z_A           75 -GGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSR  153 (272)
T ss_dssp             -TCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCG
T ss_pred             -CCcEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence             1111111    111112222       347899999998754212    11   2334566766555555444332   


Q ss_pred             ---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC-CeeeechhhHHHHHHHHHHHhC
Q 024248          154 ---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       154 ---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~-kviG~t~ldt~r~~~~lA~~l~  208 (270)
                         ...+.|+++|....           .. +.++. -.++.++.....+-+.+++.+.
T Consensus       154 ~~~~~~g~iv~isS~~~-----------~~-~~~~~~~~Y~asKaa~~~~~~~la~e~~  200 (272)
T 4e3z_A          154 LYSGQGGAIVNVSSMAA-----------IL-GSATQYVDYAASKAAIDTFTIGLAREVA  200 (272)
T ss_dssp             GGTCCCEEEEEECCTHH-----------HH-CCTTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             hccCCCCEEEEEcchHh-----------cc-CCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence               13456776664322           01 22222 2356666555667778888873

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=98.22  E-value=8.8e-06  Score=69.55  Aligned_cols=147  Identities=17%  Similarity=0.115  Sum_probs=84.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-ee-eeeccCCHHHHhC---CCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQLEDALT---GMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~~-~i~~t~d~~~al~---~ADvVIi  120 (270)
                      .++|.|+||+|++|.+++..|+.+|.  +|+++|++.....  ++........ +. .+....+++++++   ..|+||.
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   82 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLD--SLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVN   82 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEE
Confidence            35799999999999999999999998  9999998743211  1111000000 00 0111112334444   5799999


Q ss_pred             cCCCCCCCC---C---chhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          121 PAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       121 ~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      +||......   .   .....+..|+.....+++.+.+.    ...+.|+++|.....            .+.+..-.++
T Consensus        83 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~~~Y~  150 (244)
T 3d3w_A           83 NAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQ------------RAVTNHSVYC  150 (244)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT------------SCCTTBHHHH
T ss_pred             CCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhc------------cCCCCCchHH
Confidence            998653211   1   12345667777655555554433    324667767643321            1233333466


Q ss_pred             echhhHHHHHHHHHHHhC
Q 024248          191 VTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~  208 (270)
                      .++.....+-+.+++.++
T Consensus       151 ~sK~a~~~~~~~la~e~~  168 (244)
T 3d3w_A          151 STKGALDMLTKVMALELG  168 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            666666677777888764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.22  E-value=5e-06  Score=73.63  Aligned_cols=66  Identities=18%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +|||+|||+ |.+|..++..|...|+  +|+++|+++...  ..+....       +..+.+++++++++|+||++..
T Consensus         5 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g-------~~~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            5 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAI--ADVIAAG-------AETASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTT-------CEECSSHHHHHHHCSEEEECCS
T ss_pred             cceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHHCC-------CeecCCHHHHHhCCCEEEEECC
Confidence            479999997 9999999999999998  999999975322  2222211       1224578788899999999974

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=98.22  E-value=2e-05  Score=69.42  Aligned_cols=180  Identities=14%  Similarity=0.112  Sum_probs=86.1

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccc
Q 024248           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD   94 (270)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~   94 (270)
                      |-||..++-+-..-.|+.+..+    .+.+++.|+||+|.+|..++..|+..|.  +|+++|+....   ....++....
T Consensus         5 ~~~~~~~~~~~~n~~~~~mm~~----~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~   78 (280)
T 4da9_A            5 HHHSSGVDLGTENLYFQSMMTQ----KARPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG   78 (280)
T ss_dssp             ------------------CCSC----CCCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT
T ss_pred             ccCcccccccccchhhhhhhhc----cCCCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC
Confidence            3445555443333344443322    2334799999999999999999999998  99999974421   1122232211


Q ss_pred             cCcceee----eeccCCHHHHh-------CCCCEEEEcCCCCC-CCC----Cc---hhhhHHhhHHHHH----HHHHHHh
Q 024248           95 TNAVVRG----FLGQQQLEDAL-------TGMDIVIIPAGVPR-KPG----MT---RDDLFNINAGIVK----TLCEGIA  151 (270)
Q Consensus        95 ~~~~~~~----i~~t~d~~~al-------~~ADvVIi~ag~~~-~~g----~~---r~~~~~~N~~i~~----~i~~~i~  151 (270)
                        ..+..    +....++++++       ...|++|.+||... ..+    .+   ....+..|+....    .+.+.+.
T Consensus        79 --~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~  156 (280)
T 4da9_A           79 --ARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAML  156 (280)
T ss_dssp             --CCEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             --CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence              11110    11122233333       37899999998731 111    11   2234556766554    4444444


Q ss_pred             HhCC--CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          152 KCCP--KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       152 ~~~p--~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +...  .+.||++|.....    .        +.|..-.++.++.....+-+.+|..++-  ..|++.++
T Consensus       157 ~~~~~~~g~Iv~isS~~~~----~--------~~~~~~~Y~asKaa~~~l~~~la~e~~~--~gI~vn~v  212 (280)
T 4da9_A          157 ASDARASRSIINITSVSAV----M--------TSPERLDYCMSKAGLAAFSQGLALRLAE--TGIAVFEV  212 (280)
T ss_dssp             HHCCCCCEEEEEECCC-------------------CCHHHHHHHHHHHHHHHHHHHHHTT--TTEEEEEE
T ss_pred             HhCCCCCCEEEEEcchhhc----c--------CCCCccHHHHHHHHHHHHHHHHHHHHHH--hCcEEEEE
Confidence            4332  4567777644331    0        2333334566665556677888888743  34544433

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.21  E-value=2.5e-06  Score=77.42  Aligned_cols=98  Identities=17%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc-----Ccce-eeeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-----NAVV-RGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~-----~~~~-~~i~~t~d~~~al~~ADvVI  119 (270)
                      .|||+|||+ |.+|+.++..|+..|+  +|+++|+++   ....+.....     .... ..+..++++++ +.++|+||
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vi   75 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVI   75 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEE
Confidence            579999998 9999999999999998  999999842   1112221100     0000 01223457754 79999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCC
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv  166 (270)
                      ++...                ..+.++++.+..+. |+.+|+.+.|..
T Consensus        76 lavk~----------------~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           76 VAVKA----------------PALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             ECCCH----------------HHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             EeCCc----------------hhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            98621                12355666666544 677888888985

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=98.21  E-value=1.2e-05  Score=71.16  Aligned_cols=149  Identities=11%  Similarity=0.073  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccc---cCcceeee----eccCCHHHHh--
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMD---TNAVVRGF----LGQQQLEDAL--  112 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~---~~~~~~~i----~~t~d~~~al--  112 (270)
                      .+.++|.|+||+|++|.+++..|+.+|.  +|+++|++....  ...++....   ....+..+    ....++++++  
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   93 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   93 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence            3456899999999999999999999998  999999975321  122332200   01111111    1111222333  


Q ss_pred             -----CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHHHH
Q 024248          113 -----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFK  178 (270)
Q Consensus       113 -----~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~~~  178 (270)
                           ...|+||++||......   .+   ....+..|+.....+++.+....   ..+.|+++|....           
T Consensus        94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~-----------  162 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTK-----------  162 (303)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCT-----------
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeecc-----------
Confidence                 35899999998542211   11   23346778877777777755421   2456666664331           


Q ss_pred             HhCCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       179 ~~sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                        .+.|..-.++.++.....+-+.+++.+
T Consensus       163 --~~~~~~~~Y~~sK~a~~~~~~~la~e~  189 (303)
T 1yxm_A          163 --AGFPLAVHSGAARAGVYNLTKSLALEW  189 (303)
T ss_dssp             --TCCTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --cCCCcchhhHHHHHHHHHHHHHHHHHh
Confidence              023333334444444455667777776

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=98.21  E-value=1.9e-06  Score=76.67  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-C---hhHHH---HhhccccCccee-eeeccCCHHHHhCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTA---DISHMDTNAVVR-GFLGQQQLEDALTGMD  116 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-~---~~~~~---dl~~~~~~~~~~-~i~~t~d~~~al~~AD  116 (270)
                      +.|||+|+||+|++|++++..|+..|+  +|++++++. .   .....   ++..... ..+. .+....++.++++++|
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~v-~~v~~D~~d~~~l~~a~~~~d   79 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMGV-TIIEGEMEEHEKMVSVLKQVD   79 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCS
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCCc-EEEEecCCCHHHHHHHHcCCC
Confidence            456899999999999999999999998  999999975 2   11111   1211110 0000 0111224677899999


Q ss_pred             EEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC
Q 024248          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (270)
Q Consensus       117 vVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (270)
                      +||++++...             ....+.+++.+++..
T Consensus        80 ~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (321)
T 3c1o_A           80 IVISALPFPM-------------ISSQIHIINAIKAAG  104 (321)
T ss_dssp             EEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             EEEECCCccc-------------hhhHHHHHHHHHHhC
Confidence            9999987431             122355666666654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=98.19  E-value=8e-06  Score=69.45  Aligned_cols=144  Identities=12%  Similarity=0.078  Sum_probs=79.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~AD  116 (270)
                      ++|.|+||+|++|..++..|+.+|.  +|+++|++.....  ..++...   ..+. .+....+++++       +...|
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELEGA---LPLPGDVREEGDWARAVAAMEEAFGELS   80 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTC---EEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhhc---eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999998  9999999743211  1111110   0000 01111122222       34789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHHH----HHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      +||+++|......   .+   ....+..|+....    .+++.+++. ..+.|+++|.....            .+.+..
T Consensus        81 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~------------~~~~~~  147 (234)
T 2ehd_A           81 ALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSLAGK------------NPFKGG  147 (234)
T ss_dssp             EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCTTTT------------SCCTTC
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCchhc------------CCCCCC
Confidence            9999998653211   11   2334566766554    444444432 34567766643321            123333


Q ss_pred             CeeeechhhHHHHHHHHHHHhC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      -.++.++.....+.+.++..+.
T Consensus       148 ~~Y~~sK~a~~~~~~~la~e~~  169 (234)
T 2ehd_A          148 AAYNASKFGLLGLAGAAMLDLR  169 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG
T ss_pred             chhhHHHHHHHHHHHHHHHHHh
Confidence            3455555444556666776653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=98.19  E-value=9.9e-06  Score=69.61  Aligned_cols=160  Identities=15%  Similarity=0.133  Sum_probs=87.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHh---CCCCEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDAL---TGMDIV  118 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al---~~ADvV  118 (270)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++... .......+....++++.+   ...|++
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~id~l   88 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKDN-YTIEVCNLANKEECSNLISKTSNLDIL   88 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCSS-EEEEECCTTSHHHHHHHHHTCSCCSEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhccC-ccEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            3456899999999999999999999998  9999999753211  1122111 000000011111222333   378999


Q ss_pred             EEcCCCCCCC------CCchhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          119 IIPAGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       119 Ii~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      |++||.....      ..+....+..|+.....+.+.+...   ...+.|+++|.....            .+.|..-.+
T Consensus        89 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y  156 (249)
T 3f9i_A           89 VCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGI------------AGNPGQANY  156 (249)
T ss_dssp             EECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--------------CCSCSHHH
T ss_pred             EECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhc------------cCCCCCchh
Confidence            9999864311      1123345667766555554444321   234667777654431            023444446


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.++.....+-+.++..++  +..+++.++.
T Consensus       157 ~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  185 (249)
T 3f9i_A          157 CASKAGLIGMTKSLSYEVA--TRGITVNAVA  185 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH--HcCcEEEEEe
Confidence            6666555667777888764  3345444443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.18  E-value=9.2e-06  Score=72.88  Aligned_cols=114  Identities=17%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccc-----cCccee--eeeccCCHHHHhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVR--GFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~-----~~~~~~--~i~~t~d~~~al~~ADvV  118 (270)
                      .|||+|+|+ |.+|+.++..|+..|+  +|+++++++ .   ..+....     ......  .+..+++. +++.++|+|
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~-~---~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~v   73 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRD-Y---EAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLV   73 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTT-H---HHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCc-H---HHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEE
Confidence            479999998 9999999999999998  999999975 2   1121110     001111  11224566 457899999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      |++.-..    .            +.++++.++.+. |+..|+.+.|-.+.     .+.+.+.  +|..++++
T Consensus        74 ilavk~~----~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~-----~~~l~~~--~~~~~v~~  123 (312)
T 3hn2_A           74 LVGLKTF----A------------NSRYEELIRPLVEEGTQILTLQNGLGN-----EEALATL--FGAERIIG  123 (312)
T ss_dssp             EECCCGG----G------------GGGHHHHHGGGCCTTCEEEECCSSSSH-----HHHHHHH--TCGGGEEE
T ss_pred             EEecCCC----C------------cHHHHHHHHhhcCCCCEEEEecCCCCc-----HHHHHHH--CCCCcEEE
Confidence            9986321    0            123555666544 67788888898862     2333343  55556643

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.18  E-value=1.3e-05  Score=69.92  Aligned_cols=149  Identities=20%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l  112 (270)
                      .+++.|+||+|.+|.+++..|+++|.  +|+++|++....  ...++.... ...+..+. .-+|   ++++       +
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            34799999999999999999999998  999999975421  223333221 01111110 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+.+.   ...+.||++|.....           ..+.
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~-----------~~~~  155 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGP-----------ITGY  155 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTT-----------TBCC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhc-----------cCCC
Confidence            38999999998653211   12   2234567766655555544433   234566666643321           0134


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      |..-.++.++.....+-+.+|..++
T Consensus       156 ~~~~~Y~asK~a~~~l~~~la~e~~  180 (262)
T 3pk0_A          156 PGWSHYGATKAAQLGFMRTAAIELA  180 (262)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHH
Confidence            4444566666555667788888864

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=98.18  E-value=6.9e-06  Score=71.34  Aligned_cols=146  Identities=17%  Similarity=0.176  Sum_probs=81.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHhC------C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDALT------G  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al~------~  114 (270)
                      ++|.|+||+|.+|..++..|+++|.  +|+++|++....  ...++........+..    +....+++++++      +
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999998  999999975321  1122221100001111    111112333343      5


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|++|.+||......   .+   ....+..|+...    +.+++.+.+.. .+.|+++|.....            .+.|
T Consensus        86 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~------------~~~~  152 (260)
T 2z1n_A           86 ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGSVTLL------------RPWQ  152 (260)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------SCCT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhc------------CCCC
Confidence            999999998653211   11   233456676665    44555554433 3566666643221            1233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHh
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      ..-.++.++.....+-+.++..+
T Consensus       153 ~~~~Y~~sK~a~~~~~~~la~e~  175 (260)
T 2z1n_A          153 DLALSNIMRLPVIGVVRTLALEL  175 (260)
T ss_dssp             TBHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHH
Confidence            33334555544555667777776

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.18  E-value=1.2e-05  Score=72.40  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc-----ccCcce-eeeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTNAVV-RGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~-----~~~~~~-~~i~~t~d~~~al~~ADvVI  119 (270)
                      +|||+|||+ |.+|+.++..|+..|+  +|+++ .+++.  ...+...     ...... ..+..+++. ++++++|+||
T Consensus        19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~--~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   91 (318)
T 3hwr_A           19 GMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQH--VQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVL   91 (318)
T ss_dssp             -CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHH--HHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhH--HHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEE
Confidence            579999998 9999999999999998  99999 65432  1111110     000011 112234566 4578999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      ++....                .+.++++.++.+. |+.+|+.++|..+
T Consensus        92 lavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~  124 (318)
T 3hwr_A           92 FCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVE  124 (318)
T ss_dssp             ECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSS
T ss_pred             EEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            986221                1255666776654 6778888899987

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.18  E-value=5.8e-06  Score=74.39  Aligned_cols=70  Identities=10%  Similarity=0.168  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.|||+|||+ |.+|..++..|+..|+ .+|+++|++........+....       +..++++++++++||+||++..
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g-------~~~~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG-------VSCKASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT-------CEECSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC-------CEEeCCHHHHHhcCCEEEEecC
Confidence            4579999997 9999999999998886 5899999963111111222211       1224577888999999999974

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=98.17  E-value=4e-06  Score=74.07  Aligned_cols=98  Identities=16%  Similarity=0.085  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hhHHH---HhhccccCcceeeeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTA---DISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~~~---dl~~~~~~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      .|||+|+||+|++|++++..|+..|+  +|++++++..   .....   ++.........-.+....++.++++++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi   81 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVI   81 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEE
Confidence            46899999999999999999999998  9999999752   11111   1211110000000111224667899999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (270)
                      ++++.... +        .|+...+++++.+++..
T Consensus        82 ~~a~~~~~-~--------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           82 SALAGGVL-S--------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             ECCCCSSS-S--------TTTTTHHHHHHHHHHSC
T ss_pred             ECCccccc-h--------hhHHHHHHHHHHHHhcC
Confidence            99875421 1        13445577888887754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.17  E-value=5.7e-06  Score=76.09  Aligned_cols=101  Identities=11%  Similarity=0.158  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-------CccEEEEEeCCCC-----hhHHHHhhccc---cC-cc--e-eeeeccC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHMD---TN-AV--V-RGFLGQQ  106 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g-------~~~eV~LvD~~~~-----~~~~~dl~~~~---~~-~~--~-~~i~~t~  106 (270)
                      .|||+|||+ |.+|+.++..|+..|       +  +|+++|+++.     ...  .+....   .+ +.  + ..+..++
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~i~~~~   95 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVD--IINNKHENTKYLKGVPLPHNIVAHS   95 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHH--HHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHH--HHHhcCcccccCCcccCcCCeEEEC
Confidence            368999998 999999999998887       6  9999999765     322  222110   00 00  0 0123356


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhH----hC-CCCEEEEecCCCC
Q 024248          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK----CC-PKAIVNLISNPVN  167 (270)
Q Consensus       107 d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~----~~-p~a~viv~sNPv~  167 (270)
                      |+++++++||+||++..                ...+.++++.+..    .. |+.+++.++|...
T Consensus        96 ~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           96 DLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             STHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             CHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence            77788999999999862                1235667777765    44 5777877777543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.17  E-value=9.4e-06  Score=74.69  Aligned_cols=93  Identities=13%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCC---CEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM---DIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A---DvVIi~  121 (270)
                      +.|||+|||. |.+|..++..|+..|+  +|+++|+++..  ...+....       +..+++++++++++   |+||++
T Consensus        21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~~--~~~l~~~g-------~~~~~s~~e~~~~a~~~DvVi~~   88 (358)
T 4e21_A           21 QSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVNA--VQALEREG-------IAGARSIEEFCAKLVKPRVVWLM   88 (358)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTT-------CBCCSSHHHHHHHSCSSCEEEEC
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHH--HHHHHHCC-------CEEeCCHHHHHhcCCCCCEEEEe
Confidence            3579999997 9999999999999998  99999997532  22333221       12345788888888   999998


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCC
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNP  165 (270)
                      ....                .+.++++.+.... ++.+|+..|+-
T Consensus        89 vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           89 VPAA----------------VVDSMLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             SCGG----------------GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred             CCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            6321                1234445565554 56777776654

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=98.17  E-value=1.2e-05  Score=68.88  Aligned_cols=147  Identities=16%  Similarity=0.102  Sum_probs=82.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC-CChh--HHHHhhccccCcceee----eeccCCHHHHhC-----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPG--VTADISHMDTNAVVRG----FLGQQQLEDALT-----  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~-~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al~-----  113 (270)
                      .++|.|+||+|++|.+++..|+++|.  +|+++|++ ....  ...++....  ..+..    +....+++++++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  99999997 4322  112222111  11111    111112333343     


Q ss_pred             --CCCEEEEcCCC-CCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHh----CCCCEEEEecCCCCCcHHHHHHH
Q 024248          114 --GMDIVIIPAGV-PRKPG---MT---RDDLFNINAGIVKTLCEGI----AKC----CPKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       114 --~ADvVIi~ag~-~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~----~p~a~viv~sNPv~~~~~i~t~~  176 (270)
                        +.|+||++||. .....   .+   ....+..|+.....+++.+    .+.    .+...++++|....         
T Consensus        83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~---------  153 (258)
T 3afn_B           83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAG---------  153 (258)
T ss_dssp             HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHH---------
T ss_pred             cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhh---------
Confidence              89999999986 32111   11   2234566666555554433    322    12256666653211         


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                        ...+.|..-.++.++.....+.+.+++.+
T Consensus       154 --~~~~~~~~~~Y~~sK~a~~~~~~~~~~e~  182 (258)
T 3afn_B          154 --HTGGGPGAGLYGAAKAFLHNVHKNWVDFH  182 (258)
T ss_dssp             --HHCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence              11123444456666665666777788776

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=98.17  E-value=2e-05  Score=68.16  Aligned_cols=159  Identities=14%  Similarity=0.118  Sum_probs=87.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC---CccEEEEEeCCCChh-HHHHhhccccCcceee----eeccCCHHHHhC----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP---LVSVLHLYDVVNTPG-VTADISHMDTNAVVRG----FLGQQQLEDALT----  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g---~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~----i~~t~d~~~al~----  113 (270)
                      .++|.|+||+|++|..++..|++.|   .  +|+++|++.... ...++....  ..+..    +....+++++++    
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   96 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEG   96 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHHHHHH
Confidence            4579999999999999999999998   7  999999986422 122232110  11111    111223444443    


Q ss_pred             -----CCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh----------CC----CCEEEEecCCCC
Q 024248          114 -----GMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC----------CP----KAIVNLISNPVN  167 (270)
Q Consensus       114 -----~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~----------~p----~a~viv~sNPv~  167 (270)
                           ..|+||.+||.....+    .+   ....+..|+.....+++.+.+.          ..    .+.||++|....
T Consensus        97 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~  176 (267)
T 1sny_A           97 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG  176 (267)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred             hcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecccc
Confidence                 7999999998754111    11   2234566766655555555433          11    456777765332


Q ss_pred             CcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       168 ~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ..         .....+..-.++.++.....+-+.++..+.  +..+++.++
T Consensus       177 ~~---------~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  217 (267)
T 1sny_A          177 SI---------QGNTDGGMYAYRTSKSALNAATKSLSVDLY--PQRIMCVSL  217 (267)
T ss_dssp             CS---------TTCCSCCCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             cc---------cCCCCCCchHHHHHHHHHHHHHHHHHHHhh--cCCcEEEEe
Confidence            10         000011223355555555567777777763  234444443

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.16  E-value=1.5e-06  Score=74.17  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEE-EeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~L-vD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      .|||+|||+ |.+|..++..|+..|+  +|++ +|++++....  +.... ...    ..+++ .++++++|+||++...
T Consensus        23 mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~--l~~~~-g~~----~~~~~-~~~~~~aDvVilavp~   91 (220)
T 4huj_A           23 MTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSS--VTDRF-GAS----VKAVE-LKDALQADVVILAVPY   91 (220)
T ss_dssp             SCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHH--HHHHH-TTT----EEECC-HHHHTTSSEEEEESCG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHH--HHHHh-CCC----cccCh-HHHHhcCCEEEEeCCh
Confidence            469999997 9999999999999998  8888 8987643221  11110 000    01223 3668999999998621


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                                      ..+.++++.+.. .++.+++-++||..
T Consensus        92 ----------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           92 ----------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             ----------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             ----------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence                            112445555544 45667888888874

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=98.16  E-value=1.3e-05  Score=69.76  Aligned_cols=145  Identities=17%  Similarity=0.181  Sum_probs=83.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .++|.|+||+|++|..++..|+.+|.  +|+++|++....  ...++...   ..+..    +....++++++       
T Consensus        16 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   90 (278)
T 2bgk_A           16 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKH   90 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  999999874321  11222111   01111    11111233333       


Q ss_pred             CCCCEEEEcCCCCCCC-----CC---chhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 TGMDIVIIPAGVPRKP-----GM---TRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~-----g~---~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      .+.|+||+++|.....     ..   +..+.+..|+.....+++.+.+.   ...+.|+++|.....            .
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~------------~  158 (278)
T 2bgk_A           91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSF------------T  158 (278)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGT------------C
T ss_pred             CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeecccc------------C
Confidence            3799999999864211     11   12345677777776666666543   234567766643221            0


Q ss_pred             CCC-CCCeeeechhhHHHHHHHHHHHh
Q 024248          182 TYD-PKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       182 g~p-~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      +.| ..-.++.++.....+-+.+++.+
T Consensus       159 ~~~~~~~~Y~~sK~a~~~~~~~la~e~  185 (278)
T 2bgk_A          159 AGEGVSHVYTATKHAVLGLTTSLCTEL  185 (278)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            122 22235555555556677777765

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=98.16  E-value=2.5e-05  Score=68.18  Aligned_cols=155  Identities=11%  Similarity=0.011  Sum_probs=89.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHH-------HhCCCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLED-------ALTGMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~-------al~~ADvVI  119 (270)
                      ++|.|+||+|.+|.+++..|++.|.  +|+++|+++... ...+.........-.+....++++       .+...|++|
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv  104 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVV  104 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            4799999999999999999999998  999999986532 111111100000000100111222       234789999


Q ss_pred             EcCCCCCCCC--Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          120 IPAGVPRKPG--MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       120 i~ag~~~~~g--~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      .+||......  .+   ....+..|+.....+++.+...   ...+.|+++|.....            .+.+..-.++.
T Consensus       105 ~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~------------~~~~~~~~Y~a  172 (260)
T 3gem_A          105 HNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTR------------KGSSKHIAYCA  172 (260)
T ss_dssp             ECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG------------TCCSSCHHHHH
T ss_pred             ECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhc------------CCCCCcHhHHH
Confidence            9998653222  11   1235667766665555555432   234677777643321            13444444666


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ++.....+-+.+|..++-.   |++.++
T Consensus       173 sKaa~~~l~~~la~e~~~~---Irvn~v  197 (260)
T 3gem_A          173 TKAGLESLTLSFAARFAPL---VKVNGI  197 (260)
T ss_dssp             HHHHHHHHHHHHHHHHTTT---CEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCC---CEEEEE
Confidence            6665666888888888642   544444

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=98.16  E-value=5.3e-05  Score=69.16  Aligned_cols=158  Identities=18%  Similarity=0.183  Sum_probs=93.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---------hHHHHhhccccCcceee----eeccCCHHHH-
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRG----FLGQQQLEDA-  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---------~~~~dl~~~~~~~~~~~----i~~t~d~~~a-  111 (270)
                      .+.|.|+||+|.||..++..|++.|.  +|+++|++...         ....++....  ..+..    +....+++++ 
T Consensus        45 gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~  120 (346)
T 3kvo_A           45 GCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAAV  120 (346)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHH
Confidence            45799999999999999999999998  99999998642         1122222211  11110    1111112222 


Q ss_pred             ------hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHH
Q 024248          112 ------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       112 ------l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~  176 (270)
                            +...|++|.+||......   .+   ....+..|+.....+++.+..+   ...+.||++|.+.....      
T Consensus       121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~------  194 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP------  194 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC------
Confidence                  348999999998643211   11   2345677887777676666443   23467888876654210      


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                          ..++..-.++.++..-..+-+.+|.+++ .  .|++.++-
T Consensus       195 ----~~~~~~~~Y~aSKaal~~l~~~la~e~~-~--gIrvn~v~  231 (346)
T 3kvo_A          195 ----VWFKQHCAYTIAKYGMSMYVLGMAEEFK-G--EIAVNALW  231 (346)
T ss_dssp             ----GGTSSSHHHHHHHHHHHHHHHHHHHHTT-T--TCEEEEEE
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHHhc-C--CcEEEEEe
Confidence                0123233455555555567788888887 3  45554443

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=98.15  E-value=1.5e-05  Score=68.99  Aligned_cols=145  Identities=15%  Similarity=0.051  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-------  112 (270)
                      .++|.|+||+|++|..++..|+.+|.  +|+++|++....  ...++....  ..+..+. .-+|   +++++       
T Consensus        14 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           14 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  999999975321  112222111  1111110 1112   22233       


Q ss_pred             -CCCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                       ...|+||++||.....   ..+   ....+..|+.....+++.+    ++. ..+.|+++|.....    .        
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~~----~--------  156 (266)
T 1xq1_A           90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSSIAGV----V--------  156 (266)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC------------------
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEccchhc----c--------
Confidence             5789999999864321   111   2335677877776666665    333 34566666643321    0        


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      +.+..-.++.++.....+-+.+++.+
T Consensus       157 ~~~~~~~Y~~sK~a~~~~~~~la~e~  182 (266)
T 1xq1_A          157 SASVGSIYSATKGALNQLARNLACEW  182 (266)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            23334456666655566777788776

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=98.15  E-value=1.6e-05  Score=68.89  Aligned_cols=148  Identities=11%  Similarity=0.028  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHh-------CCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDAL-------TGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al-------~~AD  116 (270)
                      .+++.|+||+|.+|.+++..|++.|.  +|+++|+++....  ..++... .....-.+....++++++       ...|
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   83 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELGAA-VRFRNADVTNEADATAALAFAKQEFGHVH   83 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-------------CEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCc-eEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            34799999999999999999999998  9999999864221  1112100 000000011111222233       3899


Q ss_pred             EEEEcCCCCCCCC-------C---chhhhHHhhHHHHHHHHHHHhHhC---------CCCEEEEecCCCCCcHHHHHHHH
Q 024248          117 IVIIPAGVPRKPG-------M---TRDDLFNINAGIVKTLCEGIAKCC---------PKAIVNLISNPVNSTVPIAAEVF  177 (270)
Q Consensus       117 vVIi~ag~~~~~g-------~---~r~~~~~~N~~i~~~i~~~i~~~~---------p~a~viv~sNPv~~~~~i~t~~~  177 (270)
                      ++|.+||......       .   +....+..|+.....+++.+.+.-         ..+.|+++|....       .  
T Consensus        84 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~-------~--  154 (257)
T 3tpc_A           84 GLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAA-------F--  154 (257)
T ss_dssp             EEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHH-------H--
T ss_pred             EEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhh-------c--
Confidence            9999998753211       1   123346677766666666555431         3456776664321       0  


Q ss_pred             HHhCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       178 ~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                        . +.|..-.++.++..-..+-+.+|.+++
T Consensus       155 --~-~~~~~~~Y~asKaa~~~~~~~la~e~~  182 (257)
T 3tpc_A          155 --D-GQIGQAAYAASKGGVAALTLPAARELA  182 (257)
T ss_dssp             --H-CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             --c-CCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence              1 344444566665555567777888864

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=98.15  E-value=1.6e-05  Score=70.26  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=89.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------hC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l~  113 (270)
                      +.+.|+||+|.+|..++..|++.|.  .|+++|++....  ...++....  ..+..+. ..+|   ++++       +.
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999998  999999975321  122332211  1111110 1112   2222       34


Q ss_pred             CCCEEEEcCCCCCC--C--CCc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRK--P--GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ..|++|.+||....  +  ..+   ....+..|+.....+++.+    ++. ..+.|+++|.....          ...+
T Consensus       105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~~~----------~~~~  173 (283)
T 3v8b_A          105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSSINGT----------RTFT  173 (283)
T ss_dssp             CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTT----------TBCC
T ss_pred             CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEcChhhc----------cCCC
Confidence            79999999986422  1  111   2234667766555555554    443 34667777643321          0001


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .|..-.++.++.....+-+.+|..++-  ..|++.++
T Consensus       174 ~~~~~~Y~asKaa~~~l~~~la~e~~~--~gI~vn~v  208 (283)
T 3v8b_A          174 TPGATAYTATKAAQVAIVQQLALELGK--HHIRVNAV  208 (283)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHTTT--TTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhCc--cCcEEEEE
Confidence            233334566655556678888888753  44554443

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=98.14  E-value=1.1e-05  Score=69.57  Aligned_cols=135  Identities=18%  Similarity=0.180  Sum_probs=81.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH------HHHhhccccCcceeeeeccCCHHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------TADISHMDTNAVVRGFLGQQQLEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~------~~dl~~~~~~~~~~~i~~t~d~~~a-------l  112 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|++.....      ..|+.+.            .+++++       +
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~d~------------~~~~~~~~~~~~~~   72 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQEQYPFATEVMDVADA------------AQVAQVCQRLLAET   72 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCSSCCSSEEEECCTTCH------------HHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhhhcCCceEEEcCCCCH------------HHHHHHHHHHHHHc
Confidence            35799999999999999999999998  9999999753110      0111111            112222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+    ++. ..+.|+++|.....            .+
T Consensus        73 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~------------~~  139 (250)
T 2fwm_X           73 ERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQ-RGGAIVTVASDAAH------------TP  139 (250)
T ss_dssp             SCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGT------------SC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhc-CCCEEEEECchhhC------------CC
Confidence            37899999998653211   11   2334566766555555544    443 34566666643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHh
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .|..-.++.++.....+-+.++..+
T Consensus       140 ~~~~~~Y~~sK~a~~~~~~~la~e~  164 (250)
T 2fwm_X          140 RIGMSAYGASKAALKSLALSVGLEL  164 (250)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHh
Confidence            3333345555555556777777776

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=98.14  E-value=1.7e-05  Score=68.45  Aligned_cols=146  Identities=18%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccE-EEEEeCCCChhHHHHhhccccCcceee----eecc-CCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTNAVVRG----FLGQ-QQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~e-V~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t-~d~~~al-------  112 (270)
                      .++|.|+||+|.+|..++..|+++|.  + |+++|++.......++........+..    +... .++++++       
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            35799999999999999999999997  6 999999764222222322100011111    1111 1222222       


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC------CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC------PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~------p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      .+.|+||++||...  ..+....+..|+.....+++.+.+..      +.+.|+++|.....            .+.|..
T Consensus        83 g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~  148 (254)
T 1sby_A           83 KTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF------------NAIHQV  148 (254)
T ss_dssp             SCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT------------SCCTTS
T ss_pred             CCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhc------------cCCCCc
Confidence            37899999998642  22344567778777666666654332      14567777643221            122333


Q ss_pred             CeeeechhhHHHHHHHHHHHh
Q 024248          187 RLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l  207 (270)
                      -.++.++.....+-+.+++.+
T Consensus       149 ~~Y~~sK~a~~~~~~~la~~~  169 (254)
T 1sby_A          149 PVYSASKAAVVSFTNSLAKLA  169 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHh
Confidence            335555544455666666653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.14  E-value=1.5e-05  Score=69.61  Aligned_cols=148  Identities=16%  Similarity=0.106  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhc-cccCcceee----eeccCCHHHHhC-----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISH-MDTNAVVRG----FLGQQQLEDALT-----  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~-~~~~~~~~~----i~~t~d~~~al~-----  113 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++.. ......+..    +....+++++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999998  999999975321  1122310 000111111    111112333343     


Q ss_pred             --CCCEEEEcCCCCCCCC---C----c---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCC-CcHHHHHHHHH
Q 024248          114 --GMDIVIIPAGVPRKPG---M----T---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVN-STVPIAAEVFK  178 (270)
Q Consensus       114 --~ADvVIi~ag~~~~~g---~----~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~-~~~~i~t~~~~  178 (270)
                        +.|++|.+||......   .    +   ....+..|+.....+++.+.+..  ..+.|+++|.... .          
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------  153 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL----------  153 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS----------
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEecccccc----------
Confidence              8999999998643210   1    1   22345667665555555544321  1266777764332 1          


Q ss_pred             HhCCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       179 ~~sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                        .+.|..-.++.++.....+-+.++..+
T Consensus       154 --~~~~~~~~Y~~sK~a~~~~~~~la~e~  180 (278)
T 1spx_A          154 --HATPDFPYYSIAKAAIDQYTRNTAIDL  180 (278)
T ss_dssp             --SCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence              023333345555555556667777775

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.14  E-value=6.9e-06  Score=71.64  Aligned_cols=94  Identities=13%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccE-EEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~e-V~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      .|||+|||+ |.+|..++..|...|+  + |.++|+++...  ..+....   .+   ..+++++++++++|+||++...
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~~--~~~~~~~---g~---~~~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEESA--RELAQKV---EA---EYTTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHHH--HHHHHHT---TC---EEESCGGGSCSCCSEEEECCCH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHH--HHHHHHc---CC---ceeCCHHHHhcCCCEEEEecCH
Confidence            479999998 9999999999988887  6 89999875322  2222110   11   1234677788999999998621


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv  166 (270)
                                      ....++++.+.+.. ++.+++..++-.
T Consensus        79 ----------------~~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           79 ----------------SAFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             ----------------HHHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             ----------------HHHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                            01255666666555 677777776643

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=98.14  E-value=2.1e-05  Score=66.86  Aligned_cols=155  Identities=16%  Similarity=0.105  Sum_probs=88.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHhCCC----CEEEEc
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGM----DIVIIP  121 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al~~A----DvVIi~  121 (270)
                      +|.|+||+|.+|..++..|+.+|.  +|+++|+++....  ..++. .......-.+....++++.++..    |++|.+
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~   79 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLS-NNVGYRARDLASHQEVEQLFEQLDSIPSTVVHS   79 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCS-SCCCEEECCTTCHHHHHHHHHSCSSCCSEEEEC
T ss_pred             EEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh-hccCeEeecCCCHHHHHHHHHHHhhcCCEEEEe
Confidence            489999999999999999999998  8999999753211  11110 00000000011111233334333    999999


Q ss_pred             CCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-C-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeech
Q 024248          122 AGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-P-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM  193 (270)
Q Consensus       122 ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~  193 (270)
                      ||......   .+   ....+..|+.....+++.+.+.. . ...++++|.....            .+.|..-.++.++
T Consensus        80 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~~~Y~asK  147 (230)
T 3guy_A           80 AGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ------------QPKAQESTYCAVK  147 (230)
T ss_dssp             CCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT------------SCCTTCHHHHHHH
T ss_pred             CCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC------------CCCCCCchhHHHH
Confidence            98653221   11   22356778777777776665542 1 2356666543221            1233344466666


Q ss_pred             hhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          194 LDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       194 ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .....+-+.++..++  +..+++..+
T Consensus       148 aa~~~~~~~la~e~~--~~gi~v~~v  171 (230)
T 3guy_A          148 WAVKGLIESVRLELK--GKPMKIIAV  171 (230)
T ss_dssp             HHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHH--hcCeEEEEE
Confidence            556678888888885  334544433

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=98.14  E-value=8.9e-06  Score=70.30  Aligned_cols=147  Identities=14%  Similarity=0.136  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHHhC-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDALT-------GM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~al~-------~A  115 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|++.....  ..++... . ..+. .+....+++++++       ..
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGNN-C-VFAPADVTSEKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCTT-E-EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhCCc-e-EEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            35799999999999999999999998  9999999864221  1222100 0 0000 0111112333333       89


Q ss_pred             CEEEEcCCCCCCCC---------Cc---hhhhHHhhHHHHHHHHHHHhHhC---------CCCEEEEecCCCCCcHHHHH
Q 024248          116 DIVIIPAGVPRKPG---------MT---RDDLFNINAGIVKTLCEGIAKCC---------PKAIVNLISNPVNSTVPIAA  174 (270)
Q Consensus       116 DvVIi~ag~~~~~g---------~~---r~~~~~~N~~i~~~i~~~i~~~~---------p~a~viv~sNPv~~~~~i~t  174 (270)
                      |+||++||......         .+   ....+..|+.....+++.+.+..         ..+.|+++|....       
T Consensus        88 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~-------  160 (265)
T 2o23_A           88 DVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAA-------  160 (265)
T ss_dssp             CEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHH-------
T ss_pred             CEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhh-------
Confidence            99999998653211         11   23355677766666666655431         2356666653221       


Q ss_pred             HHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       175 ~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                          .. +.|..-.++.++.....+-+.++..+.
T Consensus       161 ----~~-~~~~~~~Y~~sK~a~~~~~~~la~e~~  189 (265)
T 2o23_A          161 ----FE-GQVGQAAYSASKGGIVGMTLPIARDLA  189 (265)
T ss_dssp             ----HH-CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----cC-CCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence                01 234344455655555556677777763

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=98.13  E-value=1.8e-06  Score=71.81  Aligned_cols=141  Identities=12%  Similarity=0.060  Sum_probs=84.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHhC---CCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALT---GMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al~---~ADvVIi~  121 (270)
                      |+|.|+||+|++|..++..|+.+    +|+++|++.....  ..++........   +....+++++++   +.|+||++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPAD---LADELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCC---TTSHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEee---CCCHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999999876    8999998753211  111110000001   111123444555   89999999


Q ss_pred             CCCCCCC------CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhh
Q 024248          122 AGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       122 ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                      +|.....      ..+....+..|+.....+++.+.+. +.+.|+++|....       +    . +.+..-.++.++..
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~~~-------~----~-~~~~~~~Y~~sK~a  140 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAYPR-------Y----V-QVPGFAAYAAAKGA  140 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCCHH-------H----H-SSTTBHHHHHHHHH
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcChhh-------c----c-CCCCcchHHHHHHH
Confidence            9865321      1123446778888888888887432 3456666664321       0    1 23434445666555


Q ss_pred             HHHHHHHHHHHh
Q 024248          196 VVRANTFVAEVL  207 (270)
Q Consensus       196 t~r~~~~lA~~l  207 (270)
                      ...+.+.+++.+
T Consensus       141 ~~~~~~~~~~~~  152 (207)
T 2yut_A          141 LEAYLEAARKEL  152 (207)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            556777777775

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=98.13  E-value=4.7e-06  Score=73.47  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-C---h-hHH---HHhhccccCccee-eeeccCCHHHHhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---P-GVT---ADISHMDTNAVVR-GFLGQQQLEDALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-~---~-~~~---~dl~~~~~~~~~~-~i~~t~d~~~al~~AD  116 (270)
                      .|||+|+||+|++|++++..|+..|+  +|++++++. .   . ...   .++..... ..+. .+....++.++++++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v-~~v~~D~~d~~~l~~~~~~~d   78 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLGV-ILLEGDINDHETLVKAIKQVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCCC-EEEEeCCCCHHHHHHHHhCCC
Confidence            35899999999999999999999897  999999975 1   1 111   12221110 0010 0111224667899999


Q ss_pred             EEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC
Q 024248          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (270)
Q Consensus       117 vVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (270)
                      +||++++...             +...+++++.+++..
T Consensus        79 ~vi~~a~~~~-------------~~~~~~l~~aa~~~g  103 (307)
T 2gas_A           79 IVICAAGRLL-------------IEDQVKIIKAIKEAG  103 (307)
T ss_dssp             EEEECSSSSC-------------GGGHHHHHHHHHHHC
T ss_pred             EEEECCcccc-------------cccHHHHHHHHHhcC
Confidence            9999987542             122355677777654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.13  E-value=1.9e-05  Score=74.39  Aligned_cols=112  Identities=15%  Similarity=0.175  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc---Ccce----------eeeeccCCHH
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---NAVV----------RGFLGQQQLE  109 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~---~~~~----------~~i~~t~d~~  109 (270)
                      +.+..|..|||. |+||..+|..|++.|+  +|+++|+++++  +..|.....   .+.+          ..+..|+|  
T Consensus         8 ~~~~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~k--v~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd--   80 (431)
T 3ojo_A            8 HHHGSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQT--IDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT--   80 (431)
T ss_dssp             ----CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS--
T ss_pred             cccCCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc--
Confidence            455679999997 9999999999999999  99999998542  223332210   0100          01233555  


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec-CCCC
Q 024248          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS-NPVN  167 (270)
Q Consensus       110 ~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s-NPv~  167 (270)
                        +++||+||++.++|...+...    ..++..+...++.+.++. ++.+|+..| -|..
T Consensus        81 --~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pg  134 (431)
T 3ojo_A           81 --PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPK  134 (431)
T ss_dssp             --CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred             --hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence              458999999998876432100    112344555566666544 344444433 3443

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=98.12  E-value=6.7e-06  Score=71.53  Aligned_cols=153  Identities=20%  Similarity=0.192  Sum_probs=85.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-----HHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-----~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ++|.|+||+|.+|..++..|+++|.  +|++.+++.....     ..|+.+.+.   +..+  .....+.+...|++|..
T Consensus        22 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~d~~~---v~~~--~~~~~~~~g~iD~lv~n   94 (253)
T 2nm0_A           22 RSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEGFLAVKCDITDTEQ---VEQA--YKEIEETHGPVEVLIAN   94 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTSHHH---HHHH--HHHHHHHTCSCSEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhccceEEEecCCCHHH---HHHH--HHHHHHHcCCCCEEEEC
Confidence            4799999999999999999999998  9999999753211     112222110   0000  00112223457999999


Q ss_pred             CCCCCCC------CCchhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          122 AGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       122 ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      ||.....      ..+....+..|+.....+++.+.+.   ...+.|+++|.......            .|..-.++.+
T Consensus        95 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~~~~Y~as  162 (253)
T 2nm0_A           95 AGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLG------------SAGQANYAAS  162 (253)
T ss_dssp             CSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCC------------HHHHHHHHHH
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC------------CCCcHHHHHH
Confidence            9865321      1123445677777665555544332   13466777765433210            0001123444


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.....+-+.++..++  +..|++.++.
T Consensus       163 K~a~~~~~~~la~e~~--~~gi~vn~v~  188 (253)
T 2nm0_A          163 KAGLVGFARSLARELG--SRNITFNVVA  188 (253)
T ss_dssp             HHHHHHHHHHHHHHHC--SSSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhh--hcCeEEEEEE
Confidence            4444556777888775  3455554443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.12  E-value=1.3e-05  Score=70.95  Aligned_cols=66  Identities=15%  Similarity=0.347  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ++|||+|||+ |.+|..++..|...|+  +|+++|+++..  ...+....    +   ...++++++++++|+||++.
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~---~~~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEAN--VAAVVAQG----A---QACENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHTTT----C---EECSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHCC----C---eecCCHHHHHhCCCEEEEEC
Confidence            3579999997 9999999999999998  99999987432  22232211    1   12457778889999999986

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.12  E-value=1.7e-05  Score=69.48  Aligned_cols=91  Identities=19%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||+|||+ |.+|..++..|...|+  +|+++|+++...  ..+..... ..    ..+++++++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g~-~~----~~~~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTC--EKAVERQL-VD----EAGQDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTTS-CS----EEESCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhCCC-Cc----cccCCHHHh-CCCCEEEEECCH--
Confidence            79999997 9999999999999998  999999875322  12221110 00    113467677 999999998621  


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecC
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sN  164 (270)
                                    ..+.++++.+.... |+.+|+.+++
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          12355666666554 5677766544

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=98.12  E-value=1e-05  Score=70.66  Aligned_cols=159  Identities=12%  Similarity=0.099  Sum_probs=88.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHH-HhhccccCcc-ee-eeeccCCHHHHh-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-DISHMDTNAV-VR-GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~-dl~~~~~~~~-~~-~i~~t~d~~~al-------~~  114 (270)
                      .++|.|+||+|++|.+++..|+.+|.  +|+++|++.... ... .+........ +. .+....++++++       ..
T Consensus        34 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           34 GKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             TCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            45899999999999999999999998  999999976422 111 1111100000 00 011111222333       35


Q ss_pred             CCEEEEcCCCCCC-C----CCc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          115 MDIVIIPAGVPRK-P----GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       115 ADvVIi~ag~~~~-~----g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .|+||++||.... .    ..+   ....+..|+..    .+.+++.+++.. .+.|+++|......            +
T Consensus       112 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~------------~  178 (279)
T 3ctm_A          112 IDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSISGKI------------V  178 (279)
T ss_dssp             CSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCCTTSC------------C
T ss_pred             CCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECchHhcc------------C
Confidence            8999999986432 1    111   12345667666    567777776643 45666665433210            1


Q ss_pred             --CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 --YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 --~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                        .+..-.++.++.....+-+.++..++-.- .+++..-|
T Consensus       179 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg  217 (279)
T 3ctm_A          179 NIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPG  217 (279)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEEC
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEecc
Confidence              12222355555555667788888876443 44443333

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=98.12  E-value=1.3e-05  Score=71.34  Aligned_cols=148  Identities=20%  Similarity=0.183  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HH-------HHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LE-------DAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~-------~al  112 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++....  ...++.... ...+..+. .-+|   ++       +.+
T Consensus        41 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  117 (293)
T 3rih_A           41 ARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDAF  117 (293)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  999999986422  222333221 01111110 1112   12       223


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+    ++.. .+.||++|.-...           ..+
T Consensus       118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS~~~~-----------~~~  185 (293)
T 3rih_A          118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSSITGP-----------VTG  185 (293)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECCSBTT-----------TBB
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeChhhc-----------cCC
Confidence            47799999998653211   11   2334667776665555554    4433 4566666643321           013


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +|..-.++.++.....+-+.+|..++
T Consensus       186 ~~~~~~Y~asKaa~~~l~~~la~e~~  211 (293)
T 3rih_A          186 YPGWSHYGASKAAQLGFMRTAAIELA  211 (293)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444466666555667788888864

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=98.12  E-value=2.6e-05  Score=68.61  Aligned_cols=156  Identities=15%  Similarity=0.170  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|++....  ...++....   .+..    +....++++++       
T Consensus        29 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (276)
T 2b4q_A           29 GRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALGELS  103 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            34799999999999999999999998  999999875321  122232110   1110    11111122222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHH----HHHHHHHhHhCC---CCEEEEecCCCCCcHHHHHHHHHH
Q 024248          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCP---KAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p---~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                      ...|++|.+||.....   ..+   ....+..|+...    +.+++.+++...   .+.||++|.....           
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~-----------  172 (276)
T 2b4q_A          104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGI-----------  172 (276)
T ss_dssp             SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGT-----------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHc-----------
Confidence            3789999999864321   111   234556676655    444555544432   1567776643221           


Q ss_pred             hCCCCCCC-eeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          180 VGTYDPKR-LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       180 ~sg~p~~k-viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                       .+.|..- .++.++.....+-+.++..++  +..|++.++.
T Consensus       173 -~~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gI~vn~v~  211 (276)
T 2b4q_A          173 -SAMGEQAYAYGPSKAALHQLSRMLAKELV--GEHINVNVIA  211 (276)
T ss_dssp             -CCCCCSCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             -CCCCCCccccHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence             1233333 566666656667778888774  3345554444

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.12  E-value=4.2e-06  Score=74.03  Aligned_cols=65  Identities=14%  Similarity=0.158  Sum_probs=50.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+....       +..++++++++++||+||++..
T Consensus         2 ~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g-------~~~~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            2 TTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCA--PLVALG-------ARQASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGH--HHHHHT-------CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC-------CeecCCHHHHHHcCCEEEEEcC
Confidence            58999997 9999999999999998  9999999864322  222211       1234578888999999999873

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.12  E-value=1.8e-05  Score=75.96  Aligned_cols=102  Identities=14%  Similarity=0.114  Sum_probs=67.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhc-cccCcceeeeeccCCHHHHhCC---CCEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTNAVVRGFLGQQQLEDALTG---MDIV  118 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~-~~~~~~~~~i~~t~d~~~al~~---ADvV  118 (270)
                      +..+.||+|||+ |.+|+.++..|+..|+  +|+++|++++..  .++.. ......   +..+.++++++++   +|+|
T Consensus         7 ~~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~~~g---i~~~~s~~e~v~~l~~aDvV   78 (497)
T 2p4q_A            7 HHMSADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSKV--DHFLANEAKGKS---IIGATSIEDFISKLKRPRKV   78 (497)
T ss_dssp             --CCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHHH--HHHHHTTTTTSS---EECCSSHHHHHHTSCSSCEE
T ss_pred             ccCCCCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHcccccCCC---eEEeCCHHHHHhcCCCCCEE
Confidence            445669999998 9999999999999999  999999976432  22332 100011   2345678777776   9999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      |++...+               ..++++++.+.... |+.+||..+|...
T Consensus        79 il~Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~  113 (497)
T 2p4q_A           79 MLLVKAG---------------APVDALINQIVPLLEKGDIIIDGGNSHF  113 (497)
T ss_dssp             EECCCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             EEEcCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence            9997322               12344556666554 4567777776543

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.12  E-value=1.1e-05  Score=72.45  Aligned_cols=99  Identities=22%  Similarity=0.246  Sum_probs=63.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC--CCChhHHHHhhccccCc--ce--eeeeccC--CHHHHhCCCCEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDTNA--VV--RGFLGQQ--QLEDALTGMDIV  118 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~--~~~~~~~~dl~~~~~~~--~~--~~i~~t~--d~~~al~~ADvV  118 (270)
                      |||+|||+ |.+|+.++..|+..|+  +|+++|+  ++..  ...+.......  ..  ..+..++  +++++++++|+|
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~v   75 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEI--LKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV   75 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHH--HHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHHH--HHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEE
Confidence            79999998 9999999999999898  9999998  5432  22222211000  00  1112234  677789999999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCC
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv  166 (270)
                      |++....                .+.++++.+....|+.+++.++|..
T Consensus        76 i~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           76 LLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             EECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             EEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9997322                1233444554423567777777766

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=98.11  E-value=2.6e-05  Score=67.62  Aligned_cols=146  Identities=18%  Similarity=0.160  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHHhC-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDALT-------GM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~al~-------~A  115 (270)
                      .++|.|+||+|.+|..++..|+.+|.  +|+++|++.....  ..++... . ..+. .+....+++++++       +.
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~d~~~v~~~~~~~~~~~g~i   87 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLENG-G-FAVEVDVTKRASVDAAMQKAIDALGGF   87 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTTC-C-EEEECCTTCHHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC-C-eEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            35899999999999999999999998  9999999753211  1111110 0 0000 0111112333333       89


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHh----HhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |+||.+||......   .+   ....+..|+.....+++.+.    +....+.|+++|.....            .+.|.
T Consensus        88 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~  155 (263)
T 3ak4_A           88 DLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAK------------VGAPL  155 (263)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT------------SCCTT
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccc------------cCCCC
Confidence            99999998653211   11   22345667655555554443    32224667766643221            12333


Q ss_pred             CCeeeechhhHHHHHHHHHHHh
Q 024248          186 KRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .-.++.++.....+-+.++..+
T Consensus       156 ~~~Y~~sK~a~~~~~~~la~e~  177 (263)
T 3ak4_A          156 LAHYSASKFAVFGWTQALAREM  177 (263)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHH
Confidence            3345555555556777777776

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.11  E-value=7.2e-06  Score=71.86  Aligned_cols=98  Identities=18%  Similarity=0.250  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-e-eeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-V-RGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~-~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+|||+ |.+|+.++..|+..|+  +|+++|+++....  ++........ + ..+. .++. ++++++|+||++...
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~-~~~~-~~~~~~d~vi~~v~~   73 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLT-ANDP-DFLATSDLLLVTLKA   73 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEE-ESCH-HHHHTCSEEEECSCG
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeee-ecCc-cccCCCCEEEEEecH
Confidence            79999998 9999999999999998  9999999864221  1211100000 1 1111 2344 678899999999732


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      .        +        +.++++.+.... |+.+++.++|..+
T Consensus        74 ~--------~--------~~~v~~~l~~~l~~~~~vv~~~~g~~  101 (291)
T 1ks9_A           74 W--------Q--------VSDAVKSLASTLPVTTPILLIHNGMG  101 (291)
T ss_dssp             G--------G--------HHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred             H--------h--------HHHHHHHHHhhCCCCCEEEEecCCCC
Confidence            2        0        244555665544 5777777888765

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=98.11  E-value=3.2e-05  Score=66.92  Aligned_cols=148  Identities=21%  Similarity=0.259  Sum_probs=81.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHHhC-------CC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDALT-------GM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~al~-------~A  115 (270)
                      +++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++........ +. .+....+++++++       ..
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999999998  999999975321  1122321110000 00 0111112233333       79


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|.+||......   .+   ....+..|+...    +.+.+.+.+....+.|+++|.....            .+.|.
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~  148 (256)
T 1geg_A           81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH------------VGNPE  148 (256)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT------------SCCTT
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhc------------CCCCC
Confidence            99999998643211   11   123456666544    4444555444324667776643221            12232


Q ss_pred             CCeeeechhhHHHHHHHHHHHhC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .-.++.++.....+-+.++..+.
T Consensus       149 ~~~Y~asK~a~~~~~~~la~e~~  171 (256)
T 1geg_A          149 LAVYSSSKFAVRGLTQTAARDLA  171 (256)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH
Confidence            23345555555556777777763

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.11  E-value=5.7e-06  Score=62.36  Aligned_cols=73  Identities=27%  Similarity=0.331  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+||+|+|+ |++|..++..|...| +  +|+++|+++....  .+...........+....++++.++++|+||.+++
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~   78 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAALA--VLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP   78 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHHH--HHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHHH--HHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence            468999999 999999999999998 6  9999999753221  12211100000001112245667899999999974

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=98.11  E-value=3.5e-05  Score=66.93  Aligned_cols=147  Identities=20%  Similarity=0.129  Sum_probs=84.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHH-------Hh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LED-------AL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~-------al  112 (270)
                      .++|.|+||+|.+|..++..|++.|.  +|+++|++....  ...++....  ..+..+. ..+|   +++       .+
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           29 GQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999998  999999975322  122232211  1111110 1112   222       23


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|+||.+||.....+    .+   ....+..|+.....+++.+...   ...+.||++|.....            .+
T Consensus       105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~  172 (262)
T 3rkr_A          105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGK------------NP  172 (262)
T ss_dssp             SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSS------------CC
T ss_pred             CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhc------------CC
Confidence            46899999998732211    11   2234566766655555554331   345677777654331            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .+..-.++.++.....+-+.++..+.
T Consensus       173 ~~~~~~Y~asKaa~~~l~~~la~e~~  198 (262)
T 3rkr_A          173 VADGAAYTASKWGLNGLMTSAAEELR  198 (262)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            33334455655555567777777763

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=98.11  E-value=2e-05  Score=67.49  Aligned_cols=145  Identities=13%  Similarity=0.096  Sum_probs=81.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeee----eccCCHHHHhC-------
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGF----LGQQQLEDALT-------  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i----~~t~d~~~al~-------  113 (270)
                      ++|.|+||+|.+|..++..|+++|.  +|+++|++.....  ..++... ....+..+    ....+++++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHA-YADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTT-TGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999998  9999998753211  1222111 01111111    11112333333       


Q ss_pred             CCCEEEEcCCCCCCCC------Cc---hhhhHHhhHHHHH----HHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          114 GMDIVIIPAGVPRKPG------MT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g------~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                      +.|+||+++|......      .+   ....+..|+....    .+.+.+++.. .+.|+++|.....            
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~------------  146 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIASVASL------------  146 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhc------------
Confidence            7999999998643211      11   2234556665554    4444444433 3566666643221            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .+.|..-.++.++.....+-+.+++.+
T Consensus       147 ~~~~~~~~Y~~sK~a~~~~~~~l~~e~  173 (250)
T 2cfc_A          147 VAFPGRSAYTTSKGAVLQLTKSVAVDY  173 (250)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            123333445666555556777777776

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=98.11  E-value=4.5e-05  Score=66.72  Aligned_cols=146  Identities=14%  Similarity=0.078  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------  111 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------  111 (270)
                      +.+++.|+||+|.+|..++..|++.|.  +|+++|+++...  ...++....  ..+..    +....+++++       
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999975321  112222111  11111    1111112222       


Q ss_pred             h-CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          112 L-TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       112 l-~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                      + ...|++|.+||......   .+   ....+..|+.....+++.+    ++. ..+.||++|.....            
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~------------  162 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIAGF------------  162 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGGGT------------
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHhhc------------
Confidence            2 57899999998753211   11   2234556766555555544    333 34567777643321            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .+.|..-.++.++.....+-+.++..+
T Consensus       163 ~~~~~~~~Y~asK~a~~~~~~~la~e~  189 (273)
T 1ae1_A          163 SALPSVSLYSASKGAINQMTKSLACEW  189 (273)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            123333345555555556777777777

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.11  E-value=3.1e-05  Score=63.63  Aligned_cols=138  Identities=12%  Similarity=0.048  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC---HHHH--hCCCCE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA--LTGMDI  117 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d---~~~a--l~~ADv  117 (270)
                      ...+||+|+|+ |.+|..++..|... |+  +|+++|+++...  ..+..... ..+.  ...++   ++++  +.++|+
T Consensus        37 ~~~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~~--~~~~~~g~-~~~~--gd~~~~~~l~~~~~~~~ad~  108 (183)
T 3c85_A           37 PGHAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEAA--QQHRSEGR-NVIS--GDATDPDFWERILDTGHVKL  108 (183)
T ss_dssp             CTTCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHHH--HHHHHTTC-CEEE--CCTTCHHHHHTBCSCCCCCE
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHHH--HHHHHCCC-CEEE--cCCCCHHHHHhccCCCCCCE
Confidence            33568999997 99999999999988 88  999999975422  12221111 0010  01112   3444  678999


Q ss_pred             EEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHH
Q 024248          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (270)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~  197 (270)
                      ||++.+..           ..|    ..++..+++.+|+..++..++-.+     ..+.+.+. |  .+.++.-...-+.
T Consensus       109 vi~~~~~~-----------~~~----~~~~~~~~~~~~~~~ii~~~~~~~-----~~~~l~~~-G--~~~vi~p~~~~a~  165 (183)
T 3c85_A          109 VLLAMPHH-----------QGN----QTALEQLQRRNYKGQIAAIAEYPD-----QLEGLLES-G--VDAAFNIYSEAGS  165 (183)
T ss_dssp             EEECCSSH-----------HHH----HHHHHHHHHTTCCSEEEEEESSHH-----HHHHHHHH-T--CSEEEEHHHHHHH
T ss_pred             EEEeCCCh-----------HHH----HHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHc-C--CCEEEchHHHHHH
Confidence            99986321           223    334456666777777666554322     22334443 3  2455544444444


Q ss_pred             HHHHHHHHHhCCCCC
Q 024248          198 RANTFVAEVLGLDPR  212 (270)
Q Consensus       198 r~~~~lA~~l~v~~~  212 (270)
                      ++...+.+.++.+..
T Consensus       166 ~l~~~~~~~~~~~~~  180 (183)
T 3c85_A          166 GFARHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHhcCCccc
Confidence            555556666665543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=98.10  E-value=7.2e-05  Score=66.20  Aligned_cols=149  Identities=12%  Similarity=0.081  Sum_probs=90.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------  111 (270)
                      +.+++.|+||+|.+|..++..|++.|.  +|++.|++....  ...++.... ...+..+. .-+|   ++++       
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999976321  111221110 11111110 1112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          112 LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      +...|++|.+||.....+    .+   ....+..|+.....+++.+...- ..+.|+++|.-..       +   .  +.
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~-------~---~--~~  190 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVA-------Y---E--GN  190 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHH-------H---H--CC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHh-------c---C--CC
Confidence            337899999998643221    11   23457788888888888887653 3456776664221       1   1  33


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +..-.++.++.....+-+.+|.+++
T Consensus       191 ~~~~~Y~asKaa~~~l~~~la~e~~  215 (291)
T 3ijr_A          191 ETLIDYSATKGAIVAFTRSLSQSLV  215 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHh
Confidence            4334466666555667788888874

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=98.10  E-value=2.4e-05  Score=67.29  Aligned_cols=103  Identities=17%  Similarity=0.226  Sum_probs=69.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceeeeeccCCHHHHhC----CCCEEEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFLGQQQLEDALT----GMDIVII  120 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~i~~t~d~~~al~----~ADvVIi  120 (270)
                      +|.|+||+|.+|..++..|+++|.  +|+++|++....   ...|+.+.+            +++++++    ..|++|+
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~~------------~v~~~~~~~~~~id~lv~   68 (257)
T 1fjh_A            3 IIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRKQ------------AIADVLAKCSKGMDGLVL   68 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHTTCTTCCSEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCHH------------HHHHHHHHhCCCCCEEEE
Confidence            699999999999999999999998  999999976421   123443321            2334443    4599999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCC
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNP  165 (270)
                      +||..... ......+..|+.....+++.+.+.   ...+.|+++|..
T Consensus        69 ~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  115 (257)
T 1fjh_A           69 CAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV  115 (257)
T ss_dssp             CCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             CCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence            99875412 224456777877776666666533   223667777643

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.10  E-value=2.1e-05  Score=69.51  Aligned_cols=90  Identities=19%  Similarity=0.285  Sum_probs=60.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||+|||++|.+|..++..|+..|+  +|+++|+++...  ..+....    +   ..+ +..+++++||+||++...  
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~~--~~~~~~g----~---~~~-~~~~~~~~aDvVi~av~~--   77 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEGR--DRLQGMG----I---PLT-DGDGWIDEADVVVLALPD--   77 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHHH--HHHHHTT----C---CCC-CSSGGGGTCSEEEECSCH--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhcC----C---CcC-CHHHHhcCCCEEEEcCCc--
Confidence            6999999779999999999999998  999999874321  2222211    1   112 445778999999998621  


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecC
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sN  164 (270)
                                    ..+.++++.+.... |+.+|+..|+
T Consensus        78 --------------~~~~~v~~~l~~~l~~~~ivv~~s~  102 (286)
T 3c24_A           78 --------------NIIEKVAEDIVPRVRPGTIVLILDA  102 (286)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEESCS
T ss_pred             --------------hHHHHHHHHHHHhCCCCCEEEECCC
Confidence                          11355666666554 5666665554

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.09  E-value=1.3e-05  Score=70.30  Aligned_cols=155  Identities=19%  Similarity=0.278  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+||+|.+|..++..|++.|.  .|++.|++.....  ..++... . ..+. .+....+++++       +...
T Consensus        27 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           27 GRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLGKD-V-FVFSANLSDRKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCSS-E-EEEECCTTSHHHHHHHHHHHHHHHTSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc-e-EEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            34799999999999999999999998  9999998753211  1111100 0 0000 01111112222       3478


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|.+||......   .+   ....+..|+..    .+.+++.+.+. ..+.||++|.....    .        +.|.
T Consensus       103 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~Iv~isS~~~~----~--------~~~~  169 (266)
T 3grp_A          103 DILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR-RYGRIINITSIVGV----V--------GNPG  169 (266)
T ss_dssp             CEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC-------------------C
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEECCHHHc----C--------CCCC
Confidence            99999998753211   11   23345677766    55555555544 34567766643331    0        1222


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .-.++.++.....+-+.+|.+++-  ..|++.++
T Consensus       170 ~~~Y~asKaa~~~~~~~la~e~~~--~gI~vn~v  201 (266)
T 3grp_A          170 QTNYCAAKAGLIGFSKALAQEIAS--RNITVNCI  201 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGG--GTEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhh--hCcEEEEE
Confidence            233555555555677788888743  34544433

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=98.09  E-value=2e-05  Score=70.14  Aligned_cols=158  Identities=18%  Similarity=0.128  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee--eeeccCCHHHHh-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~--~i~~t~d~~~al-------~~  114 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|++....  ...++..........  .+....++++++       ..
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            34799999999999999999999998  999999975321  122332211100000  011111222233       37


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|++|.+||......   .+   ....+..|+.....+++.    +.+....+.|+++|.....            .+.|
T Consensus       109 id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~  176 (301)
T 3tjr_A          109 VDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGL------------VPNA  176 (301)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGT------------SCCT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhc------------CCCC
Confidence            899999998753211   11   233456676555555544    4444445677777643321            1223


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ..-.++.++.....+-+.++..+.  +..|++.++
T Consensus       177 ~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  209 (301)
T 3tjr_A          177 GLGTYGVAKYGVVGLAETLAREVK--PNGIGVSVL  209 (301)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            233345554444456666777663  333444443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.09  E-value=2.5e-05  Score=68.59  Aligned_cols=95  Identities=14%  Similarity=0.181  Sum_probs=61.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC-CCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~-~ADvVIi~ag~~  125 (270)
                      |||+|||+ |.+|..++..|...|+..+|+++|+++....  .+.......     ..+++++++++ +||+||++....
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~~~-----~~~~~~~~~~~~~aDvVilavp~~   73 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESIS--KAVDLGIID-----EGTTSIAKVEDFSPDFVMLSSPVR   73 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--HHHHTTSCS-----EEESCGGGGGGTCCSEEEECSCHH
T ss_pred             cEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH--HHHHCCCcc-----cccCCHHHHhcCCCCEEEEcCCHH
Confidence            58999997 9999999999998886448999998753211  121111100     11346767888 999999986211


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCC
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNP  165 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNP  165 (270)
                                      ...++++.+..+ .++.+|+.++|.
T Consensus        74 ----------------~~~~v~~~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           74 ----------------TFREIAKKLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             ----------------HHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             ----------------HHHHHHHHHHhhCCCCcEEEECCCC
Confidence                            122444445443 367777776654

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.09  E-value=2.2e-05  Score=67.68  Aligned_cols=155  Identities=19%  Similarity=0.142  Sum_probs=85.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHH-------hCCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDA-------LTGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~ADv  117 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|++.....  ++........+. .+....+++++       +...|+
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLR--EAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35799999999999999999999998  9999999743211  111100000000 01001112222       235899


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      +|.+||......   .+   ....+..|+.....+++.+.+.   ...+.|+++|... .            .+.|..-.
T Consensus        81 lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~------------~~~~~~~~  147 (245)
T 1uls_A           81 VVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-Y------------LGNLGQAN  147 (245)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-G------------GCCTTCHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-h------------cCCCCchh
Confidence            999998653211   11   2345667877776666665543   2345677666422 1            02233333


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ++.++.....+-+.++.++.  +..|++.++
T Consensus       148 Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  176 (245)
T 1uls_A          148 YAASMAGVVGLTRTLALELG--RWGIRVNTL  176 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHh--HhCeEEEEE
Confidence            44444444456677777764  334544333

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.08  E-value=4e-05  Score=66.33  Aligned_cols=156  Identities=15%  Similarity=0.116  Sum_probs=89.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH-HHhhccccCcceeeeeccCCHHHH-------hCCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDA-------LTGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~-~dl~~~~~~~~~~~i~~t~d~~~a-------l~~ADv  117 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++...... .++........   +....+++++       +...|+
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~D---~~~~~~~~~~~~~~~~~~g~iD~   80 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVD---LEDERERVRFVEEAAYALGRVDV   80 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECC---TTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhCCEEEee---CCCHHHHHHHHHHHHHHcCCCCE
Confidence            35799999999999999999999998  99999998653111 12210000000   1001112222       347899


Q ss_pred             EEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          118 VIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       118 VIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      +|.+||.....   ..+   ....+..|+.....+++.+.+.   ...+.|+++|.....            .+.|..-.
T Consensus        81 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~------------~~~~~~~~  148 (256)
T 2d1y_A           81 LVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL------------FAEQENAA  148 (256)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT------------SBCTTBHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcccccc------------CCCCCChh
Confidence            99999865321   111   2345677777666666655432   234667776643221            02233334


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ++.++.....+-+.++..++  +..+++.++.
T Consensus       149 Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  178 (256)
T 2d1y_A          149 YNASKGGLVNLTRSLALDLA--PLRIRVNAVA  178 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHh--hcCeEEEEEe
Confidence            55555555567777887764  3345544444

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=98.08  E-value=6.5e-05  Score=64.22  Aligned_cols=142  Identities=13%  Similarity=0.139  Sum_probs=81.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHH-------HHhCCCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLE-------DALTGMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~-------~al~~ADvVI  119 (270)
                      +++.|+||+|.+|..++..|+.+|.  +|+++|++... ...++. .  ....-.+.. .+.+       +.+...|++|
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-~--~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv   75 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-A--VPLPTDLEK-DDPKGLVKRALEALGGLHVLV   75 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-C--EEEECCTTT-SCHHHHHHHHHHHHTSCCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-c--EEEecCCch-HHHHHHHHHHHHHcCCCCEEE
Confidence            4799999999999999999999998  99999997643 111221 0  000000111 2222       2345899999


Q ss_pred             EcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC--CCCC
Q 024248          120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY--DPKR  187 (270)
Q Consensus       120 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~--p~~k  187 (270)
                      .+||......   .+   ....+..|+.....+++.+    ++. ..+.|+++|.....            .+.  +..-
T Consensus        76 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------~~~~~~~~~  142 (239)
T 2ekp_A           76 HAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA-GWGRVLFIGSVTTF------------TAGGPVPIP  142 (239)
T ss_dssp             ECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SCCTTSCCH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchhhc------------cCCCCCCCc
Confidence            9998653211   11   2234556665554444444    443 24566666643221            012  3333


Q ss_pred             eeeechhhHHHHHHHHHHHhC
Q 024248          188 LLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~  208 (270)
                      .++.++.....+-+.+++++.
T Consensus       143 ~Y~~sK~a~~~~~~~la~e~~  163 (239)
T 2ekp_A          143 AYTTAKTALLGLTRALAKEWA  163 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG
T ss_pred             cHHHHHHHHHHHHHHHHHHhh
Confidence            455555555567777887773

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=98.08  E-value=1.2e-05  Score=69.96  Aligned_cols=145  Identities=17%  Similarity=0.176  Sum_probs=82.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHHhC-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDALT-------GM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~al~-------~A  115 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|++.....  ..++... . ..+. .+....+++++++       +.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~v~~~~~~~~~~~g~i   82 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-A-RYVHLDVTQPAQWKAAVDTAVTAFGGL   82 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-E-EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcC-c-eEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999999999998  9999999753221  1122110 0 0000 0111112333343       89


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|++||.....   ..+   ....+..|+...    +.+++.+++.. .+.|+++|.....            .+.|.
T Consensus        83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~------------~~~~~  149 (260)
T 1nff_A           83 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGL------------AGTVA  149 (260)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------SCCTT
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEeehhhc------------CCCCC
Confidence            9999999865321   111   233556776665    45555555443 4566666643221            12333


Q ss_pred             CCeeeechhhHHHHHHHHHHHh
Q 024248          186 KRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .-.++.++.....+-+.++..+
T Consensus       150 ~~~Y~~sK~a~~~~~~~la~e~  171 (260)
T 1nff_A          150 CHGYTATKFAVRGLTKSTALEL  171 (260)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHh
Confidence            3345555555556777777775

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=98.08  E-value=2.2e-05  Score=67.76  Aligned_cols=147  Identities=12%  Similarity=0.084  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC-CCChh--HHHHhhccccCcceee----eeccCCHHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~-~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al------  112 (270)
                      .++|.|+||+|++|..++..|+..|.  +|+++++ +....  ...++....  ..+..    +....++++++      
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  9999998 43211  112222111  11111    11111222333      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                       .+.|+||++||......   .+   ....+..|+.....+++.    +.+..+.+.|+++|.....            .
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~------------~  150 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK------------I  150 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT------------S
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhc------------C
Confidence             37899999998653211   11   223456666555544444    4433325677777643221            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +.|..-.++.++.....+-+.++..+.
T Consensus       151 ~~~~~~~Y~~sK~a~~~~~~~la~e~~  177 (261)
T 1gee_A          151 PWPLFVHYAASKGGMKLMTETLALEYA  177 (261)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            233333456665555566777777763

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=98.08  E-value=2.4e-05  Score=68.44  Aligned_cols=147  Identities=21%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHHh-------CCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDAL-------TGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~al-------~~AD  116 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|+++...  ...++... .....-.+....++++++       ...|
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   87 (271)
T 3tzq_B           11 NKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGRG-AVHHVVDLTNEVSVRALIDFTIDTFGRLD   87 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCTT-CEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCCC-eEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            34799999999999999999999998  999999986532  11222110 000000011111222233       3789


Q ss_pred             EEEEcCCCCCC-CC----Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          117 IVIIPAGVPRK-PG----MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       117 vVIi~ag~~~~-~g----~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      ++|.+||.... ..    .+   ....+..|+.....+++.+    .+ ...+.|+++|.....            .+.+
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~iv~isS~~~~------------~~~~  154 (271)
T 3tzq_B           88 IVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLIS-AGGGAIVNISSATAH------------AAYD  154 (271)
T ss_dssp             EEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCGGGT------------SBCS
T ss_pred             EEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCEEEEECCHHHc------------CCCC
Confidence            99999987522 11    11   2345677877666666655    43 345667777643221            1233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhC
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ..-.++.++.....+-+.+|..++
T Consensus       155 ~~~~Y~asKaa~~~l~~~la~e~~  178 (271)
T 3tzq_B          155 MSTAYACTKAAIETLTRYVATQYG  178 (271)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHh
Confidence            334456665555667778888863

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=98.08  E-value=3.8e-05  Score=68.18  Aligned_cols=176  Identities=13%  Similarity=0.085  Sum_probs=95.1

Q ss_pred             CccccccccccccccccccCCCCCCCeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcc
Q 024248           22 PTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAV   98 (270)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~   98 (270)
                      +.-+.+||.+.-..+      ..+.+++.|+||+|  .+|..++..|+..|.  +|++.|+++... ...++........
T Consensus        12 ~~~~~~gp~sm~~~~------~l~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~   83 (296)
T 3k31_A           12 LEAQTQGPGSMRTGM------LMEGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKL   83 (296)
T ss_dssp             ---------CCCCCC------TTTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCE
T ss_pred             ceecccCCccccchh------ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeE
Confidence            334556776532211      22334799999976  999999999999998  999999985321 1112211100000


Q ss_pred             -ee-eeeccCCHHHH-------hCCCCEEEEcCCCCCC-----C--CCc---hhhhHHhhHHHHHHHHHHHhHhCC-CCE
Q 024248           99 -VR-GFLGQQQLEDA-------LTGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCCP-KAI  158 (270)
Q Consensus        99 -~~-~i~~t~d~~~a-------l~~ADvVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~  158 (270)
                       +. .+....+++++       +...|++|.+||....     +  ..+   ....+..|+.....+++.+...-. .+.
T Consensus        84 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~  163 (296)
T 3k31_A           84 TVPCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGS  163 (296)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEE
T ss_pred             EEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence             00 01111122222       2478999999987531     1  111   234567788888888888776543 467


Q ss_pred             EEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       159 viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      |+++|.....            .+.|..-.++.++..-..+-+.+|..++-  ..|++.++
T Consensus       164 IV~isS~~~~------------~~~~~~~~Y~asKaal~~l~~~la~e~~~--~gIrvn~v  210 (296)
T 3k31_A          164 ILTLSYYGAE------------KVVPHYNVMGVCKAALEASVKYLAVDLGK--QQIRVNAI  210 (296)
T ss_dssp             EEEEECGGGT------------SCCTTTTHHHHHHHHHHHHHHHHHHHHHT--TTEEEEEE
T ss_pred             EEEEEehhhc------------cCCCCchhhHHHHHHHHHHHHHHHHHHhh--cCcEEEEE
Confidence            7777643321            12344445666655555677888888743  34544333

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=98.07  E-value=2.8e-05  Score=68.09  Aligned_cols=155  Identities=16%  Similarity=0.097  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHH-------hCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-------LTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~a-------l~~ADvV  118 (270)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.....  ++.........-.+....+++++       +...|++
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   91 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVERLK--ALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAI   91 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHH--TTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            34799999999999999999999998  9999999743211  11110000000000001112222       3478999


Q ss_pred             EEcCCCCCCCC---Cc---hhhhHHhhHHHHHH----HHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          119 IIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       119 Ii~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      |.+||......   .+   ....+..|+.....    +++.+++. ..+.||++|.....            .++|..-.
T Consensus        92 vnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~IV~isS~~~~------------~~~~~~~~  158 (266)
T 3p19_A           92 VNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR-NCGTIINISSIAGK------------KTFPDHAA  158 (266)
T ss_dssp             EECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGT------------SCCTTCHH
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcChhhC------------CCCCCCch
Confidence            99998753211   11   22346677666555    44444443 34666666643221            13444444


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ++.++.....+-+.++..++  +..|++.++
T Consensus       159 Y~asK~a~~~~~~~la~e~~--~~gi~vn~v  187 (266)
T 3p19_A          159 YCGTKFAVHAISENVREEVA--ASNVRVMTI  187 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            66665555567778888874  334554444

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=98.07  E-value=1.6e-05  Score=69.08  Aligned_cols=146  Identities=12%  Similarity=0.075  Sum_probs=81.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|++....  ...++.... ...+..    +....++++++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  999999975321  112222110 001111    11111222333       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .+.|++|.+||......   .+   ....+..|+.....+++.+    ++. ..+.|+++|.....            .+
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------~~  150 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRAR-GGGAIIHNASICAV------------QP  150 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchhhc------------CC
Confidence            37999999998653211   11   2234556665555554444    333 24566666643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHh
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .|..-.++.++.....+-+.++..+
T Consensus       151 ~~~~~~Y~~sK~a~~~~~~~la~e~  175 (263)
T 3ai3_A          151 LWYEPIYNVTKAALMMFSKTLATEV  175 (263)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHh
Confidence            3333345555555556777777776

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=98.07  E-value=1.3e-05  Score=69.51  Aligned_cols=146  Identities=18%  Similarity=0.169  Sum_probs=82.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHHh-------CCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDAL-------TGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~al-------~~A  115 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|+++....  ..++.. .. ..+. .+....++++++       ...
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-AA-RYQHLDVTIEEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-GE-EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-ce-eEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            45899999999999999999999998  9999999753211  111110 00 0000 011111222333       389


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|.+||......   .+   ....+..|+...    +.+++.+++.. .+.|+++|.....            .+.|.
T Consensus        81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~------------~~~~~  147 (254)
T 1hdc_A           81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGL------------MGLAL  147 (254)
T ss_dssp             CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------SCCTT
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhc------------cCCCC
Confidence            99999998653211   11   223456665544    45666665543 4566666643221            12333


Q ss_pred             CCeeeechhhHHHHHHHHHHHhC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .-.++.++.....+-+.++..++
T Consensus       148 ~~~Y~asK~a~~~~~~~la~e~~  170 (254)
T 1hdc_A          148 TSSYGASKWGVRGLSKLAAVELG  170 (254)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             chhHHHHHHHHHHHHHHHHHHhh
Confidence            33455555555567777777764

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=98.07  E-value=1.7e-05  Score=69.01  Aligned_cols=115  Identities=22%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeee-ccCC---HHHHh-------C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL-GQQQ---LEDAL-------T  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~-~t~d---~~~al-------~  113 (270)
                      +++.|+||+|.+|..++..|+.+|.  +|+++|++.....  ..++........+..+. .-+|   +++++       .
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  9999999753211  12232210011111110 1112   22233       3


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHH----HHHHHHHHHhHhC--CCCEEEEecCC
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAG----IVKTLCEGIAKCC--PKAIVNLISNP  165 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~----i~~~i~~~i~~~~--p~a~viv~sNP  165 (270)
                      ..|++|.+||....  .+....+..|+.    ..+.+++.+.+..  +.+.|+++|..
T Consensus        86 ~id~lv~~Ag~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  141 (267)
T 2gdz_A           86 RLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  141 (267)
T ss_dssp             CCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCEEEECCCCCCh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence            57999999986532  233445667765    5566666665543  24667777643

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.07  E-value=1.7e-05  Score=68.31  Aligned_cols=143  Identities=15%  Similarity=0.142  Sum_probs=80.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeee-ccCC---HHH---HhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LED---ALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~-~t~d---~~~---al~~ADvV  118 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|+++...  .++...   ..+..+. .-+|   +++   .+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~--~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKL--QELEKY---PGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--GGGGGS---TTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhc---cCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            35799999999999999999999998  999999974321  111110   0111000 1112   222   24578999


Q ss_pred             EEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCC-CCCe
Q 024248          119 IIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD-PKRL  188 (270)
Q Consensus       119 Ii~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p-~~kv  188 (270)
                      |.+||......   .+   ....+..|+.....+++.+...   ...+.|+++|.....           . +.| ..-.
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~-----------~-~~~~~~~~  146 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS-----------V-KGVVNRCV  146 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT-----------T-BCCTTBHH
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhC-----------c-CCCCCCcc
Confidence            99998653211   11   2234556666555555544321   234567777654321           0 122 2223


Q ss_pred             eeechhhHHHHHHHHHHHh
Q 024248          189 LGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l  207 (270)
                      ++.++.....+-+.++..+
T Consensus       147 Y~~sK~a~~~~~~~la~e~  165 (246)
T 2ag5_A          147 YSTTKAAVIGLTKSVAADF  165 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            5555555556777777776

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=98.07  E-value=7.7e-06  Score=72.68  Aligned_cols=92  Identities=15%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hhH-HHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~-~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +||+|+||+|++|++++..|+..|+  +|++++++.. ... ..++..... ..+. .+....++.++++++|+||++++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~v-~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLGA-IIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTTC-EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCCC-EEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            3899999999999999999999998  9999999763 221 112221110 0000 01112246678999999999986


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (270)
                      ...             ....+++++.+++..
T Consensus        89 ~~~-------------~~~~~~l~~aa~~~g  106 (318)
T 2r6j_A           89 FPQ-------------ILDQFKILEAIKVAG  106 (318)
T ss_dssp             GGG-------------STTHHHHHHHHHHHC
T ss_pred             hhh-------------hHHHHHHHHHHHhcC
Confidence            431             122356677776654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.07  E-value=1.4e-05  Score=70.51  Aligned_cols=96  Identities=13%  Similarity=0.075  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +.|||+|||+ |.+|..++..|...|+..+|+++|+++...  ..+.......     ..++++++++++||+||++...
T Consensus         5 ~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~-----~~~~~~~~~~~~aDvVilavp~   76 (290)
T 3b1f_A            5 EEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSR--DIALERGIVD-----EATADFKVFAALADVIILAVPI   76 (290)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHH--HHHHHTTSCS-----EEESCTTTTGGGCSEEEECSCH
T ss_pred             ccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHH--HHHHHcCCcc-----cccCCHHHhhcCCCEEEEcCCH
Confidence            3579999997 999999999998874323999999874322  1222111000     1234666778999999998621


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHh-C-CCCEEEEecC
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC-C-PKAIVNLISN  164 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~-p~a~viv~sN  164 (270)
                                      ....++++.+..+ . ++.+|+.++|
T Consensus        77 ----------------~~~~~v~~~l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           77 ----------------KKTIDFIKILADLDLKEDVIITDAGS  102 (290)
T ss_dssp             ----------------HHHHHHHHHHHTSCCCTTCEEECCCS
T ss_pred             ----------------HHHHHHHHHHHhcCCCCCCEEEECCC
Confidence                            1125556666654 3 5666665555

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=98.06  E-value=2.3e-05  Score=68.39  Aligned_cols=148  Identities=14%  Similarity=0.073  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC-CCChh--HHHHhhcc-ccCcc-ee-eeecc----CCHHHHh---
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPG--VTADISHM-DTNAV-VR-GFLGQ----QQLEDAL---  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~-~~~~~--~~~dl~~~-~~~~~-~~-~i~~t----~d~~~al---  112 (270)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+ ++...  ...++... ..... +. .+...    .++++++   
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence            35799999999999999999999998  9999999 54321  11222211 00000 00 01111    1222223   


Q ss_pred             ----CCCCEEEEcCCCCCCCC-----------------CchhhhHHhhHHHHHHHHHHHhHhC--CC------CEEEEec
Q 024248          113 ----TGMDIVIIPAGVPRKPG-----------------MTRDDLFNINAGIVKTLCEGIAKCC--PK------AIVNLIS  163 (270)
Q Consensus       113 ----~~ADvVIi~ag~~~~~g-----------------~~r~~~~~~N~~i~~~i~~~i~~~~--p~------a~viv~s  163 (270)
                          ...|++|.+||......                 .+....+..|+.....+++.+.+..  ..      +.||++|
T Consensus        89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~is  168 (276)
T 1mxh_A           89 FRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLC  168 (276)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEEC
T ss_pred             HHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEC
Confidence                37899999998643211                 1122356778877777777776542  12      5677776


Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          164 NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       164 NPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .....            .+.|..-.++.++.....+-+.++..+
T Consensus       169 S~~~~------------~~~~~~~~Y~asK~a~~~l~~~la~e~  200 (276)
T 1mxh_A          169 DAMTD------------LPLPGFCVYTMAKHALGGLTRAAALEL  200 (276)
T ss_dssp             CGGGG------------SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhc------------CCCCCCeehHHHHHHHHHHHHHHHHHH
Confidence            43321            123333345666555556777788777

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=98.06  E-value=6e-06  Score=72.76  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh----hHHH---HhhccccCccee-eeeccCCHHHHhCCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTA---DISHMDTNAVVR-GFLGQQQLEDALTGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~----~~~~---dl~~~~~~~~~~-~i~~t~d~~~al~~ADv  117 (270)
                      .|||+|+||+|++|++++..|+..|+  +|++++++...    ....   .+..... ..+. .+....++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~~v-~~v~~D~~d~~~l~~~~~~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASGA-NIVHGSIDDHASLVEAVKNVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTTC-EEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhCCC-EEEEeccCCHHHHHHHHcCCCE
Confidence            35899999999999999999999997  99999987431    1111   2211110 0000 01112246678899999


Q ss_pred             EEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC
Q 024248          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (270)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  154 (270)
                      ||++++...             ....+++++.+++..
T Consensus        81 vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (308)
T 1qyc_A           81 VISTVGSLQ-------------IESQVNIIKAIKEVG  104 (308)
T ss_dssp             EEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             EEECCcchh-------------hhhHHHHHHHHHhcC
Confidence            999986431             112356777777665

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=98.06  E-value=3e-05  Score=68.30  Aligned_cols=157  Identities=15%  Similarity=0.125  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+||+|.+|.+++..|++.|.  +|+++|+++....  ..++... . ..+. .+....+.+++       +...
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIGSK-A-FGVRVDVSSAKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCTT-E-EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc-e-EEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            45799999999999999999999998  9999999753211  1111100 0 0000 01111122222       3478


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      |++|.+||......   .+   ....+..|+.....+++.+...   ...+.|+++|.....            .+.+..
T Consensus       103 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~  170 (277)
T 4dqx_A          103 DVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTAT------------SAIADR  170 (277)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGT------------SCCTTB
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhC------------cCCCCC
Confidence            99999998653211   11   2234567776665555555432   234567777643321            123333


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -.++.++.....+-+.+|..++  +..|++.++.
T Consensus       171 ~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  202 (277)
T 4dqx_A          171 TAYVASKGAISSLTRAMAMDHA--KEGIRVNAVA  202 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEEe
Confidence            3455655555567778888874  3345444443

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=98.05  E-value=1.7e-05  Score=68.49  Aligned_cols=148  Identities=16%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhcccc-----Ccceeeee-ccCC---HHHHhCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDT-----NAVVRGFL-GQQQ---LEDALTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~-----~~~~~~i~-~t~d---~~~al~~  114 (270)
                      .++|.|+||+|++|..++..|+.+|.  +|+++|++.....  ..++.....     ...+..+. .-+|   ++++++.
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            35799999999999999999999998  9999999753211  111111000     01111111 1112   3333333


Q ss_pred             -------C-CEEEEcCCCCCCCC---C---chhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHH
Q 024248          115 -------M-DIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       115 -------A-DvVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~  176 (270)
                             . |+||++||......   .   +....+..|+.....+++.+.+.    ...+.|+++|....       . 
T Consensus        85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~-------~-  156 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVG-------K-  156 (264)
T ss_dssp             HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHH-------H-
T ss_pred             HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhh-------c-
Confidence                   3 99999998653211   1   12345667776666666665543    22456776664321       0 


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                         . +.|..-.++.++.....+-+.+++.+
T Consensus       157 ---~-~~~~~~~Y~~sK~a~~~~~~~la~e~  183 (264)
T 2pd6_A          157 ---V-GNVGQTNYAASKAGVIGLTQTAAREL  183 (264)
T ss_dssp             ---H-CCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---c-CCCCChhhHHHHHHHHHHHHHHHHHh
Confidence               1 23444445666655556777777775

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=98.05  E-value=2.2e-05  Score=67.96  Aligned_cols=157  Identities=17%  Similarity=0.159  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-------  112 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|++....  ...++....  ..+..+. .-+|   +++++       
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  999999975321  122232211  1111110 1112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .+.|++|.+||.....+    .+   ....+..|+.....+++.+.+.   ...+.|+++|.....            .+
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~  157 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAY------------HP  157 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT------------SC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhc------------CC
Confidence            37999999998642111    11   2234566766665555544321   234566666643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++.....+-+.++..++  +..+++.++.
T Consensus       158 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  193 (260)
T 2zat_A          158 FPNLGPYNVSKTALLGLTKNLAVELA--PRNIRVNCLA  193 (260)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            33333455555555667777888774  3445554444

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=98.05  E-value=3.5e-05  Score=67.70  Aligned_cols=158  Identities=17%  Similarity=0.167  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcce-e-eeeccCCHHHH-------hCC
Q 024248           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV-R-GFLGQQQLEDA-------LTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~--VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~-~-~i~~t~d~~~a-------l~~  114 (270)
                      .++|.|+||+|+  +|..++..|+..|.  +|+++|++.......++......... . .+....++++.       +..
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            347999999977  99999999999998  99999998632222333221110000 0 01111122222       235


Q ss_pred             CCEEEEcCCCCCCC---C-----Cc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          115 MDIVIIPAGVPRKP---G-----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       115 ADvVIi~ag~~~~~---g-----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      .|++|.+||.....   +     .+   ....+..|+.....+++.+...-  ..+.|+++|.....            .
T Consensus       104 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~------------~  171 (280)
T 3nrc_A          104 LDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAE------------K  171 (280)
T ss_dssp             CCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGT------------S
T ss_pred             CCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccc------------c
Confidence            79999999875321   1     11   22345677766666666655432  24667777643321            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.|..-.++.++..-..+-+.++.+++  +..|++.++
T Consensus       172 ~~~~~~~Y~asKaal~~~~~~la~e~~--~~gi~v~~v  207 (280)
T 3nrc_A          172 AMPSYNTMGVAKASLEATVRYTALALG--EDGIKVNAV  207 (280)
T ss_dssp             CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence            234334456655555567777888774  334544333

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=98.05  E-value=6.9e-06  Score=70.90  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCCChh--HHHHhhccccCccee--eeeccCCHHHHhC-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR--GFLGQQQLEDALT-------  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~--~i~~t~d~~~al~-------  113 (270)
                      .++|.|+||+|++|.+++..|++ .|.  +|++++++....  ...++..........  .+....+++++++       
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            35799999999999999999999 898  999999975321  122332211001000  0111112333333       


Q ss_pred             CCCEEEEcCCCCCCCCC------chhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecC
Q 024248          114 GMDIVIIPAGVPRKPGM------TRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~------~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sN  164 (270)
                      ..|+||++||.......      +....+..|+.....+++.+.+.. +.+.|+++|.
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence            79999999986532211      123457788888888888887653 2356666664

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=98.05  E-value=1.7e-05  Score=69.71  Aligned_cols=159  Identities=18%  Similarity=0.082  Sum_probs=92.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccC-cceeeee-ccCC---HHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTN-AVVRGFL-GQQQ---LEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~-~~~~~i~-~t~d---~~~al------  112 (270)
                      .+++.|+||+|.+|.+++..|+++|.  +|+++|+++...  ...++...... ..+..+. .-+|   .++++      
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999998  999999975321  22233322110 0111110 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                       ...|++|++||.....+    .+   ....+..|+.....+++.+.+.   ...+.|+++|...       .     ..
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~-------~-----~~  156 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIA-------A-----SN  156 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHH-------H-----HS
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHH-------H-----cC
Confidence             36799999998632211    11   2335667877666666655433   2356777766321       1     11


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.+..-.++.++.....+-+.+|..++-  ..|++.++.
T Consensus       157 ~~~~~~~Y~asK~a~~~l~~~la~e~~~--~gi~vn~v~  193 (281)
T 3svt_A          157 THRWFGAYGVTKSAVDHLMQLAADELGA--SWVRVNSIR  193 (281)
T ss_dssp             CCTTCTHHHHHHHHHHHHHHHHHHHHGG--GTEEEEEEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhh--cCeEEEEEE
Confidence            3444455667666666788888888853  345544443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.05  E-value=2.3e-05  Score=70.87  Aligned_cols=74  Identities=19%  Similarity=0.181  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc-c-----c-Ccceeee-eccCCHHHHhCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-D-----T-NAVVRGF-LGQQQLEDALTGMD  116 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~-~-----~-~~~~~~i-~~t~d~~~al~~AD  116 (270)
                      +.|||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+... .     . ......+ ..+++++++++++|
T Consensus         3 ~~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   77 (359)
T 1bg6_A            3 ESKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIK--EIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD   77 (359)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence            3479999998 9999999999999998  9999998753211  11111 0     0 0000001 12457878899999


Q ss_pred             EEEEcCC
Q 024248          117 IVIIPAG  123 (270)
Q Consensus       117 vVIi~ag  123 (270)
                      +||++..
T Consensus        78 ~vi~~v~   84 (359)
T 1bg6_A           78 VILIVVP   84 (359)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9999974

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=98.05  E-value=1.2e-05  Score=69.71  Aligned_cols=148  Identities=18%  Similarity=0.152  Sum_probs=87.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC-CCChh--HHHHhhccccCcceee----eeccCCHHHHhC-----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPG--VTADISHMDTNAVVRG----FLGQQQLEDALT-----  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~-~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al~-----  113 (270)
                      .++|.|+||+|++|.+++..|+++|.  +|+++++ +....  ...++....  ..+..    +....+++++++     
T Consensus        21 ~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           21 GKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  9999998 33211  112232111  11111    111112333333     


Q ss_pred             --CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          114 --GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       114 --~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                        +.|+||+++|......   .+   ....+..|+.....+++.+.+... .+.|+++|.....           ..+.+
T Consensus        97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~-----------~~~~~  165 (274)
T 1ja9_A           97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV-----------MTGIP  165 (274)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT-----------CCSCC
T ss_pred             cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhc-----------cCCCC
Confidence              8899999998653211   11   234567788888888777766532 2566666643220           01233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhC
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      ..-.++.++.....+-+.+++.++
T Consensus       166 ~~~~Y~~sK~a~~~~~~~~~~e~~  189 (274)
T 1ja9_A          166 NHALYAGSKAAVEGFCRAFAVDCG  189 (274)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhh
Confidence            333455665555667777888774

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=98.04  E-value=2.8e-05  Score=67.53  Aligned_cols=157  Identities=19%  Similarity=0.151  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l  112 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++....  ..+..+. .-+|   .++.       +
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           12 DAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             TCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  999999975321  122232211  1111110 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC--CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          113 TGMDIVIIPAGVPRKP--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      ...|++|.+||.....  ..+   ....+..|+.....+++.+...   ...+.|+++|.....            .+.|
T Consensus        88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~  155 (256)
T 3gaf_A           88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGE------------NTNV  155 (256)
T ss_dssp             SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT------------CCCT
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHc------------CCCC
Confidence            3789999999875321  112   2234566766665555554322   345677777643321            1233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ..-.++.++.....+-+.++..++  +..|++.++.
T Consensus       156 ~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v~  189 (256)
T 3gaf_A          156 RMASYGSSKAAVNHLTRNIAFDVG--PMGIRVNAIA  189 (256)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEEE
Confidence            334466666555667788888874  3345544443

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=98.04  E-value=3.4e-05  Score=66.61  Aligned_cols=157  Identities=16%  Similarity=0.147  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHH-------hCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDA-------LTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~a-------l~~AD  116 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++.....  ..++... .....-.+....+.++.       +...|
T Consensus         6 gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (247)
T 3rwb_A            6 GKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIGKK-ARAIAADISDPGSVKALFAEIQALTGGID   82 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTT-EEECCCCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc-eEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence            45799999999999999999999998  9999999753211  1122100 00000001111112222       34789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ++|.+||......   .+   ....+..|+.....+++.    +++....+.|+++|....           . .+.|..
T Consensus        83 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~-----------~-~~~~~~  150 (247)
T 3rwb_A           83 ILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTF-----------F-AGTPNM  150 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHH-----------H-HTCTTC
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhh-----------c-cCCCCc
Confidence            9999998753221   11   223456676655444444    665554567777764321           0 134444


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      -.++.++..-..+-+.+|.+++  +..|++.++
T Consensus       151 ~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  181 (247)
T 3rwb_A          151 AAYVAAKGGVIGFTRALATELG--KYNITANAV  181 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            4566665555567788888874  344544443

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=98.04  E-value=6e-05  Score=65.30  Aligned_cols=157  Identities=15%  Similarity=0.075  Sum_probs=90.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-------  112 (270)
                      .++|.|+||+|.+|..++..|+.+|.  +|+++|++....  ...++....  ..+..+. .-+|   +++++       
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  999999975321  122232111  1111110 1112   22222       


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                       ...|++|.+||......   .+   ....+..|+.....+++.+...   ...+.|+++|.....            .+
T Consensus        85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~  152 (260)
T 2ae2_A           85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA------------LA  152 (260)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT------------SC
T ss_pred             CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc------------cC
Confidence             57999999998653211   11   2335567776666665555321   234667776643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++.....+-+.++..++  +..|++.++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  188 (260)
T 2ae2_A          153 VPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGVG  188 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            34334466666656667788888874  3445554444

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=98.04  E-value=1.2e-05  Score=69.05  Aligned_cols=156  Identities=16%  Similarity=0.172  Sum_probs=89.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-------  112 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|+++...  ...++....  ..+..+. ..+|   +++.+       
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  999999975321  112222211  1111110 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ...|++|++||......   .+   ....+..|+.....+++.+...   ...+.|+++|....          .  .+.
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~----------~--~~~  148 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVG----------S--AGN  148 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHH----------H--HCC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhh----------c--cCC
Confidence            35799999998753221   11   2334566766555555544322   23466777664322          0  134


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      |..-.++.++.....+-+.+++.++  +..+++.++
T Consensus       149 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  182 (247)
T 3lyl_A          149 PGQTNYCAAKAGVIGFSKSLAYEVA--SRNITVNVV  182 (247)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence            4445566666555667788888874  334544443

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=98.04  E-value=2.5e-05  Score=66.62  Aligned_cols=148  Identities=14%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh---
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL---  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al---  112 (270)
                      ++|.|+||+|++|..++..|+..|...     +|++++++....  ...++...  ...+..+. .-+|   +++++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            479999999999999999999888632     799999875321  11222211  11111110 1112   22233   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          113 ----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       113 ----~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                          ...|+||++||......   .+   ....+..|+.....+++.+.++   ...+.|+++|.....           
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~-----------  149 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAAT-----------  149 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT-----------
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhc-----------
Confidence                37999999998753211   11   2334566766666555555332   234667777643321           


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                       .+.+..-.++.++.....+-+.++..+.
T Consensus       150 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~  177 (244)
T 2bd0_A          150 -KAFRHSSIYCMSKFGQRGLVETMRLYAR  177 (244)
T ss_dssp             -SCCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence             1234444466665555566677777764

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=98.04  E-value=2.7e-05  Score=67.35  Aligned_cols=143  Identities=8%  Similarity=-0.000  Sum_probs=82.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHH-------hCCCCEEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDA-------LTGMDIVI  119 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~a-------l~~ADvVI  119 (270)
                      ++.|+||+|.+|..++..|+++|.  +|+++|++.... ...++....  ..+..+ ...+++++       +...|++|
T Consensus         3 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~-d~~~v~~~~~~~~~~~g~iD~lv   77 (254)
T 1zmt_A            3 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETY--PQLKPM-SEQEPAELIEAVTSAYGQVDVLV   77 (254)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHC--TTSEEC-CCCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC--CcEEEE-CHHHHHHHHHHHHHHhCCCCEEE
Confidence            589999999999999999999998  999999875422 122222111  111101 12233333       34789999


Q ss_pred             EcCCCC-CCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          120 IPAGVP-RKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       120 i~ag~~-~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      .+||.. ....   .+   ....+..|+.....+++.+    ++. ..+.|+++|.....            .+.|..-.
T Consensus        78 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------~~~~~~~~  144 (254)
T 1zmt_A           78 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR-KSGHIIFITSATPF------------GPWKELST  144 (254)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCSTTT------------SCCTTCHH
T ss_pred             ECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECCcccc------------cCCCCchH
Confidence            999875 2111   11   2234566766555554444    333 34667777644331            12333334


Q ss_pred             eeechhhHHHHHHHHHHHhC
Q 024248          189 LGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~  208 (270)
                      ++.++.....+-+.++..++
T Consensus       145 Y~~sK~a~~~~~~~la~e~~  164 (254)
T 1zmt_A          145 YTSARAGACTLANALSKELG  164 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            55555555567777887763

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=98.04  E-value=2.6e-05  Score=66.88  Aligned_cols=154  Identities=10%  Similarity=0.019  Sum_probs=85.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHH-------hCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDA-------LTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~a-------l~~ADv  117 (270)
                      +++.|+||+|.+|..++..|++.|.  +|+++|++....  ...++... .....-.+....+++++       +...|+
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   80 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGNA-VIGIVADLAHHEDVDVAFAAAVEWGGLPEL   80 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG-EEEEECCTTSHHHHHHHHHHHHHHHCSCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCC-ceEEECCCCCHHHHHHHHHHHHHhcCCCcE
Confidence            4699999999999999999999998  999999975321  11122110 00000001111112222       336799


Q ss_pred             EEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          118 VIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       118 VIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      +|.+||.....   ..+   ....+..|+.....+++.+...-  ..+.|+++|.....            .+.|..-.+
T Consensus        81 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~~~Y  148 (235)
T 3l6e_A           81 VLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQ------------VGKANESLY  148 (235)
T ss_dssp             EEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECC------------SSCSSHHHH
T ss_pred             EEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhc------------CCCCCCcHH
Confidence            99999874321   111   23456778777766666654332  23466666543321            022222335


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccceE
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVDVP  217 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~~~  217 (270)
                      +.++.....+-+.++..++  +..|++.
T Consensus       149 ~asKaa~~~~~~~la~e~~--~~gi~v~  174 (235)
T 3l6e_A          149 CASKWGMRGFLESLRAELK--DSPLRLV  174 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--TSSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhh--ccCCEEE
Confidence            5555555567788888875  3445443

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=98.04  E-value=3.5e-05  Score=67.63  Aligned_cols=155  Identities=15%  Similarity=0.112  Sum_probs=89.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------T  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------~  113 (270)
                      +++.|+||+|.+|..++..|+++|.  +|+++|+++...  ...++....  ..+..    +....++++++       .
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999998  999999975321  112232111  11110    11111222222       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh-----CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-----~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ..|++|.+||......   .+   ....+..|+.....+++.+.+.     ...+.|+++|.....            .+
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~------------~~  166 (277)
T 2rhc_B           99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK------------QG  166 (277)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGT------------SC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccc------------cC
Confidence            7899999998653211   11   2345677877777777665433     123567766643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .|..-.++.++.....+-+.++..+.  +..|++.++
T Consensus       167 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  201 (277)
T 2rhc_B          167 VVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAV  201 (277)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHT--TTEEEEEEE
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence            33333455555555567777887774  334554444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.04  E-value=3.6e-05  Score=73.41  Aligned_cols=98  Identities=17%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhc-cccCcceeeeeccCCHHHHh---CCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTNAVVRGFLGQQQLEDAL---TGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~-~~~~~~~~~i~~t~d~~~al---~~ADvVIi~a  122 (270)
                      |||+|||+ |.+|+.++..|+..|+  +|+++|++.+..  .++.. ......   +..++++++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~g~g---i~~~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKGTK---VLGAHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTTSS---CEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHhccccCCC---eEEeCCHHHHHhhccCCCEEEEeC
Confidence            78999997 9999999999999998  899999975432  22222 100011   22356777766   5999999987


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      ..+               ..+.++++.+.... |+.+||..+|...
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~  105 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEY  105 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            322               11233444555444 5667777777544

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=98.04  E-value=2.3e-05  Score=70.47  Aligned_cols=117  Identities=17%  Similarity=0.070  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-------C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-------T  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-------~  113 (270)
                      ++|.|+||+|++|.+++..|+.+|.  +|++.|++....  ...++........+..+. .-+|   +++++       .
T Consensus         9 k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            9 RTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             CEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999999  999999975422  112222111101111110 1112   22333       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHh-----CCCCEEEEecCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKC-----CPKAIVNLISNP  165 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~-----~p~a~viv~sNP  165 (270)
                      ..|+||.+||......   .+   ....+..|+.....+++.+    .+.     ...+.|+++|.-
T Consensus        87 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~  153 (319)
T 3ioy_A           87 PVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASM  153 (319)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccc
Confidence            6699999998653211   11   2335666766555544444    332     135667776643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.04  E-value=6.6e-06  Score=71.25  Aligned_cols=97  Identities=14%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~--~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .|||+|||+ |.+|..++..|...|+  ..+|+++|++++.  ...+....   .   +..+++.++++++||+||++..
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g---~~~~~~~~e~~~~aDvVilav~   72 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---G---LTTTTDNNEVAKNADILILSIK   72 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---C---CEECSCHHHHHHHCSEEEECSC
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---C---CEEeCChHHHHHhCCEEEEEeC
Confidence            479999997 9999999999999886  2489999997542  22222110   0   1224577788999999999971


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                       +   .            .+.++++.+..+. |+.+++..++.+.
T Consensus        73 -~---~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           73 -P---D------------LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             -T---T------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             -H---H------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence             1   1            1244556666544 4566654555554

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=98.04  E-value=7.6e-05  Score=65.61  Aligned_cols=159  Identities=18%  Similarity=0.198  Sum_probs=87.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHHh-------CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~al-------~~  114 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|+++...  ...++........ +. .+....++++++       ..
T Consensus        32 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           32 GKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999998  999999976422  1223322111000 00 011111222333       37


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHH----HHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|++|.+||......   .+   ....+..|+.....+++    .+.+....+.|++++.....           ....+
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~-----------~~~~~  178 (276)
T 3r1i_A          110 IDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGH-----------IINIP  178 (276)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT-----------SCCCS
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhc-----------ccCCC
Confidence            899999998753221   11   12334567655544444    44444334667666643221           00111


Q ss_pred             -CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          185 -PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       185 -~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                       ..-.++.++.....+-+.+|.+++  +..|++.++
T Consensus       179 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  212 (276)
T 3r1i_A          179 QQVSHYCTSKAAVVHLTKAMAVELA--PHQIRVNSV  212 (276)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence             112355555555667788888874  334544333

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=98.03  E-value=1.2e-05  Score=71.10  Aligned_cols=148  Identities=14%  Similarity=0.023  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHhC-----
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDALT-----  113 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al~-----  113 (270)
                      +.++|.|+||+|++|.+++..|+++|.  +|+++|++....  ...++.... ...+..    +....+++++++     
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999975321  112222110 011111    111112223333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          114 --GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       114 --~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                        ..|+||++||.....   ..+   ....+..|+.....+++.+.+.    ...+.|+++|....       +    . 
T Consensus       102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~-------~----~-  169 (302)
T 1w6u_A          102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYA-------E----T-  169 (302)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHH-------H----H-
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccc-------c----c-
Confidence              459999999864321   111   2345667777666665555432    33466766654211       0    1 


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      +.+..-.++.++.....+-+.++..+
T Consensus       170 ~~~~~~~Y~~sK~a~~~~~~~la~~~  195 (302)
T 1w6u_A          170 GSGFVVPSASAKAGVEAMSKSLAAEW  195 (302)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHh
Confidence            23444456666655566777787775

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.03  E-value=2.4e-05  Score=67.63  Aligned_cols=142  Identities=13%  Similarity=0.098  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHH---HhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLED---ALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~---al~~ADvVIi~  121 (270)
                      +.++|.|+||+|.+|..++..|+++|.  +|+++|+++.  ...++...  .. +-.+  ..+.++   .+.+.|++|.+
T Consensus        18 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~--~~~~~~~~--~~-~~D~--~~~~~~~~~~~~~iD~lv~~   88 (249)
T 1o5i_A           18 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSGHR--YV-VCDL--RKDLDLLFEKVKEVDILVLN   88 (249)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTCSE--EE-ECCT--TTCHHHHHHHSCCCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHH--HHHhhCCe--EE-EeeH--HHHHHHHHHHhcCCCEEEEC
Confidence            345899999999999999999999998  9999999742  11122100  00 0001  123333   34489999999


Q ss_pred             CCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          122 AGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       122 ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ||......   .+   ....+..|+..    .+.+++.+++.. .+.|+++|.....            .+.+..-.++.
T Consensus        89 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~------------~~~~~~~~Y~~  155 (249)
T 1o5i_A           89 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSFSVI------------SPIENLYTSNS  155 (249)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------SCCTTBHHHHH
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcchHhc------------CCCCCCchHHH
Confidence            98653211   11   12344556544    445566665543 4566666643221            12232233444


Q ss_pred             chhhHHHHHHHHHHHhC
Q 024248          192 TMLDVVRANTFVAEVLG  208 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~  208 (270)
                      ++.....+-+.++..+.
T Consensus       156 sK~a~~~~~~~la~e~~  172 (249)
T 1o5i_A          156 ARMALTGFLKTLSFEVA  172 (249)
T ss_dssp             HHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            55555566677777763

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=98.03  E-value=2.5e-05  Score=67.02  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH------hCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA------LTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a------l~~AD  116 (270)
                      .++|.|+||+|++|..++..|+++|.  +|+++|++.....  ..++... ....+. .+....+++++      +.+.|
T Consensus        11 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~id   87 (254)
T 2wsb_A           11 GACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELGAA-VAARIVADVTDAEAMTAAAAEAEAVAPVS   87 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG-EEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccc-ceeEEEEecCCHHHHHHHHHHHHhhCCCc
Confidence            35799999999999999999999998  9999999753211  1122100 000000 01111122222      25789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      +||++||......   .+   ....+..|+...    +.+.+.+++.. .+.|+++|.....            .+.|..
T Consensus        88 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~------------~~~~~~  154 (254)
T 2wsb_A           88 ILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSMSGT------------IVNRPQ  154 (254)
T ss_dssp             EEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------SCCSSS
T ss_pred             EEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEecchhc------------cCCCCC
Confidence            9999998653211   11   233456676664    44444444433 4566666643221            012222


Q ss_pred             --CeeeechhhHHHHHHHHHHHh
Q 024248          187 --RLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       187 --kviG~t~ldt~r~~~~lA~~l  207 (270)
                        -.++.++.....+.+.+++.+
T Consensus       155 ~~~~Y~~sK~a~~~~~~~~~~~~  177 (254)
T 2wsb_A          155 FASSYMASKGAVHQLTRALAAEW  177 (254)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHH
Confidence              335556555556777777776

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.02  E-value=1.2e-05  Score=70.92  Aligned_cols=66  Identities=17%  Similarity=0.264  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.|||+|||+ |.+|..++..|...|+  +|+++| ++.....  +....       +..+++++++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~~--~~~~g-------~~~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVADE--LLSLG-------AVNVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCHH--HHTTT-------CBCCSSHHHHHHTCSEEEECCS
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHHH--HHHcC-------CcccCCHHHHHhcCCEEEEECC
Confidence            3479999997 9999999999999998  999999 7543221  22211       1124577788899999999873

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=98.02  E-value=5.5e-06  Score=71.74  Aligned_cols=144  Identities=14%  Similarity=0.108  Sum_probs=78.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++.....  ..++. ... ..+. .+....+++++       +...
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~~~-~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-ERS-MFVRHDVSSEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-TTE-EEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-Cce-EEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            45799999999999999999999998  9999999753211  11221 000 0000 01111112222       2356


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|.+||.....   ..+   ....+..|+.    ..+.+++.+++..  +.|+++|.....            .+.|.
T Consensus        82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~------------~~~~~  147 (253)
T 1hxh_A           82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSW------------LPIEQ  147 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGT------------SCCTT
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchhhc------------CCCCC
Confidence            9999999865321   111   2234566655    4445555555432  677777643221            12233


Q ss_pred             CCeeeechhhHHHHHHHHHHHh
Q 024248          186 KRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .-.++.++.....+-+.++.++
T Consensus       148 ~~~Y~~sK~a~~~~~~~la~e~  169 (253)
T 1hxh_A          148 YAGYSASKAAVSALTRAAALSC  169 (253)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHh
Confidence            3335555544445666666665

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=98.02  E-value=2.3e-05  Score=67.78  Aligned_cols=156  Identities=17%  Similarity=0.187  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHHh-------CCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDAL-------TGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~al-------~~A  115 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|+++....  ..++... . ..+. .+....++++++       ...
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGDA-A-LAVAADISKEADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTT-E-EEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCCc-e-EEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            35799999999999999999999998  9999999753211  1122110 0 0000 011111222223       378


Q ss_pred             CEEEEcCCCCCCCCC----c---hhhhHHhhHHH----HHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          116 DIVIIPAGVPRKPGM----T---RDDLFNINAGI----VKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       116 DvVIi~ag~~~~~g~----~---r~~~~~~N~~i----~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      |++|.+||.....+.    +   ....+..|+..    .+.+.+.+.+..   ..+.|+++|.....            .
T Consensus        85 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~------------~  152 (261)
T 3n74_A           85 DILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAG------------R  152 (261)
T ss_dssp             CEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTT------------S
T ss_pred             CEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhc------------C
Confidence            999999987542221    1   12345556554    444455554432   14566666644331            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.|..-.++.++.....+-+.++.++.  +..+++.++
T Consensus       153 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  188 (261)
T 3n74_A          153 PRPNLAWYNATKGWVVSVTKALAIELA--PAKIRVVAL  188 (261)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            233333356665555667778888874  334544443

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=98.02  E-value=6.8e-05  Score=65.01  Aligned_cols=158  Identities=11%  Similarity=0.047  Sum_probs=92.8

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcceee----eeccCCHHHHh------
Q 024248           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRG----FLGQQQLEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~--VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~~~----i~~t~d~~~al------  112 (270)
                      .+++.|+||+|+  +|..++..|+++|.  +|+++|++... ....++........+..    +....++++.+      
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            347999999988  99999999999998  99999987532 12222322111101111    11111232222      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          113 -TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                       ...|++|.+||....     +  ..+   ....+..|+.....+++.+.... +.+.|+++|.....            
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~------------  152 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGE------------  152 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT------------
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccc------------
Confidence             378999999986531     1  111   23345677777777888777654 34677777643321            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .+.|..-.++.++.....+-+.++..++  +..|++.++
T Consensus       153 ~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  189 (266)
T 3oig_A          153 LVMPNYNVMGVAKASLDASVKYLAADLG--KENIRVNSI  189 (266)
T ss_dssp             SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            1234334456665555567788888874  334544443

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=98.02  E-value=2.4e-05  Score=68.14  Aligned_cols=148  Identities=18%  Similarity=0.126  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-------  112 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++........+..+. .-+|   +++++       
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  999999975321  112222110001111110 1112   22233       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      ...|++|.+||.....+    .+   ....+..|+..    .+.+++.+++.. .+.|+++|.....            .
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~------------~  157 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGI------------R  157 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGT------------S
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhc------------c
Confidence            37899999998653211    11   22345566644    345556665543 4566666643221            0


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +.|..-.++.++.....+-+.++..++
T Consensus       158 ~~~~~~~Y~asK~a~~~~~~~la~e~~  184 (267)
T 1iy8_A          158 GIGNQSGYAAAKHGVVGLTRNSAVEYG  184 (267)
T ss_dssp             BCSSBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            223333345555444556677777763

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=98.02  E-value=4.6e-05  Score=65.97  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=86.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hH--HHHhhccccCcceeeee-ccCC---HHHHh------
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV--TADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~--~~dl~~~~~~~~~~~i~-~t~d---~~~al------  112 (270)
                      +++.|+||+|.+|..++..|++.|.  +|+++|++...  ..  ..++....  ..+..+. .-+|   +++++      
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999998  99999987543  11  12232211  1111110 1112   22233      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                       ...|++|.+||......   .+   ....+..|+.....+++.+    ++....+.|+++|.....            .
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~  146 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAI------------Q  146 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGT------------S
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhc------------c
Confidence             37899999998653211   11   2234566766554444444    333332667776643221            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.|..-.++.++.....+-+.++..++  +..+++.++
T Consensus       147 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v  182 (258)
T 3a28_C          147 GFPILSAYSTTKFAVRGLTQAAAQELA--PKGHTVNAY  182 (258)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHH--hhCeEEEEE
Confidence            233333455555555567777777764  334544443

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.02  E-value=4.5e-05  Score=67.19  Aligned_cols=156  Identities=19%  Similarity=0.158  Sum_probs=88.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHH-------HhCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLED-------ALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~-------al~~A  115 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++.....  ..++... . ..+. .+....++++       .+...
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIGCG-A-AACRVDVSDEQQIIAMVDACVAAFGGV  104 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCSS-C-EEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCCc-c-eEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            34799999999999999999999998  9999999753211  1222100 0 0000 0111111222       23478


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      |++|.+||.....   ..+   ....+..|+.....+++.+...   ...+.||++|.....            .+.|..
T Consensus       105 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~------------~~~~~~  172 (277)
T 3gvc_A          105 DKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQ------------VAVGGT  172 (277)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT------------SCCTTB
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc------------cCCCCc
Confidence            9999999875321   111   2345667777655555554332   345667777643321            123333


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      -.++.++.....+-+.+|..++  +..|++.++
T Consensus       173 ~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (277)
T 3gvc_A          173 GAYGMSKAGIIQLSRITAAELR--SSGIRSNTL  203 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            3456665555567777888874  334544443

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=98.02  E-value=5.6e-06  Score=70.75  Aligned_cols=157  Identities=20%  Similarity=0.240  Sum_probs=87.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceee----eeccCCHHHHhC------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRG----FLGQQQLEDALT------  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~----i~~t~d~~~al~------  113 (270)
                      .++|.|+||+|++|..++..|+++|.  +|+++|++.....  ..++.... ...+..    +....+++++++      
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999998  9999999753211  11221100 011111    111112333333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHH----HHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 -~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                       +.|+||++||......   .+   ..+.+..|+.....+++    .+.+. ..+.|+++|...       +.   .  +
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~-------~~---~--~  150 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISSVV-------GF---T--G  150 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECCHH-------HH---H--C
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEccHH-------hc---C--C
Confidence             8999999998653211   11   23456677777644444    44333 335666666321       10   0  2


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++.....+-+.+++.++  +..+++.++.
T Consensus       151 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v~  186 (248)
T 2pnf_A          151 NVGQVNYSTTKAGLIGFTKSLAKELA--PRNVLVNAVA  186 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            33333455555555567777777764  2345444443

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=98.02  E-value=2.2e-05  Score=66.50  Aligned_cols=143  Identities=17%  Similarity=0.192  Sum_probs=91.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      +++.|+||+|.+|..++..|++.|.  .|++.|++..    .|+.+.+.   +      ..+-+.+...|++|.+||...
T Consensus         7 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~~---v------~~~~~~~g~id~lv~nAg~~~   71 (223)
T 3uce_A            7 TVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEKS---V------YHYFETIGAFDHLIVTAGSYA   71 (223)
T ss_dssp             EEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHHH---H------HHHHHHHCSEEEEEECCCCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHHH---H------HHHHHHhCCCCEEEECCCCCC
Confidence            4689999999999999999999998  9999998643    34433210   0      011233467899999998652


Q ss_pred             CCC----Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHH
Q 024248          127 KPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (270)
Q Consensus       127 ~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r  198 (270)
                      ..+    .+   ....+..|+.....+++.+.+.- +.+.|+++|.....            .+.|..-.++.++.....
T Consensus        72 ~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~~~~~~~Y~asK~a~~~  139 (223)
T 3uce_A           72 PAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSR------------KVVANTYVKAAINAAIEA  139 (223)
T ss_dssp             CCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGT------------SCCTTCHHHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhc------------cCCCCchHHHHHHHHHHH
Confidence            211    11   23456788888888888876653 24567766643221            123433445566555566


Q ss_pred             HHHHHHHHhCCCCCccceEEEc
Q 024248          199 ANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +-+.++++++-    +++.++.
T Consensus       140 ~~~~la~e~~~----i~vn~v~  157 (223)
T 3uce_A          140 TTKVLAKELAP----IRVNAIS  157 (223)
T ss_dssp             HHHHHHHHHTT----SEEEEEE
T ss_pred             HHHHHHHhhcC----cEEEEEE
Confidence            77888888863    5554443

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=98.01  E-value=7.1e-05  Score=64.47  Aligned_cols=145  Identities=18%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-ChhHHHHhhccccCcceeeee-ccCC---HHHH-------hC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-~~~~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l~  113 (270)
                      .++|.|+||+|.+|..++..|+.+|.  +|+++|++. ..... .+....  ..+..+. .-+|   ++++       +.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEA-AIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHH-HHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHH-HHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            34799999999999999999999998  999999986 32211 222111  1111110 1112   2222       35


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|++|.+||......   .+   ....+..|+...    +.+++.+++.. .+.|+++|.....            .+.
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~------------~~~  148 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYW------------LKI  148 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGG------------SCC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhc------------cCC
Confidence            7899999998653211   11   223456676664    44444455443 4566666643221            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      |..-.++.++.....+-+.++..++
T Consensus       149 ~~~~~Y~asK~a~~~~~~~la~e~~  173 (249)
T 2ew8_A          149 EAYTHYISTKAANIGFTRALASDLG  173 (249)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3333455555555567777887763

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=98.01  E-value=4.5e-05  Score=67.00  Aligned_cols=156  Identities=19%  Similarity=0.129  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceeeee-ccCC---HHH-------H
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFL-GQQQ---LED-------A  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~i~-~t~d---~~~-------a  111 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|++.|++....   ...++....  ..+..+. .-+|   +++       .
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  999999875321   112222211  1111010 0112   212       2


Q ss_pred             hCCCCEEEEcCCCCCCCC---C---chhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          112 LTGMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      +...|++|.+||......   .   +....+..|+.....+++.+.+.- ..+.|+++|.-...            .+.+
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~~~  172 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ------------AKAV  172 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT------------CSSC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhc------------cCCC
Confidence            347899999998753211   1   123457788888888888887663 34677777643221            0122


Q ss_pred             C-CCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          185 P-KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       185 ~-~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      . .-.++.++.....+-+.++..++  +..|++.++
T Consensus       173 ~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  206 (283)
T 1g0o_A          173 PKHAVYSGSKGAIETFARCMAIDMA--DKKITVNVV  206 (283)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            1 23355555555567777777763  334444333

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.01  E-value=1.1e-05  Score=68.63  Aligned_cols=66  Identities=17%  Similarity=0.177  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.|||+|||+ |.+|..++..|...|+  +|+++|++...  ...+...    .+.   .+ +++++++++|+||++..
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~----g~~---~~-~~~~~~~~~DvVi~av~   92 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPKR--TARLFPS----AAQ---VT-FQEEAVSSPEVIFVAVF   92 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHHH--HHHHSBT----TSE---EE-EHHHHTTSCSEEEECSC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHc----CCc---ee-cHHHHHhCCCEEEECCC
Confidence            4579999997 9999999999999998  89999987432  2223221    111   12 57788999999999874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=98.01  E-value=7.2e-05  Score=64.64  Aligned_cols=159  Identities=14%  Similarity=0.116  Sum_probs=90.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhcccc-Cccee--ee--eccCCHHHH------
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT-NAVVR--GF--LGQQQLEDA------  111 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~-~~~~~--~i--~~t~d~~~a------  111 (270)
                      +.+++.|+||+|.+|..++..|++.|.  +|+++|+++...  ...++..... .....  .+  ....+.++.      
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999975321  1222221100 00000  00  000112222      


Q ss_pred             -hCCCCEEEEcCCCCCCC----CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          112 -LTGMDIVIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       112 -l~~ADvVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                       +...|++|.+||.....    ..+   ....+..|+.....+++.+...   ...+.||++|.....            
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~------------  156 (252)
T 3f1l_A           89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGR------------  156 (252)
T ss_dssp             HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGT------------
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhc------------
Confidence             23789999999863211    112   1234667776665555555321   345667776643321            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .+.+..-.++.++.....+-+.+|.+++-  . |++.++.
T Consensus       157 ~~~~~~~~Y~asK~a~~~l~~~la~e~~~--~-irvn~v~  193 (252)
T 3f1l_A          157 QGRANWGAYAASKFATEGMMQVLADEYQQ--R-LRVNCIN  193 (252)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHTTT--T-CEEEEEE
T ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHHhcC--C-cEEEEEe
Confidence            12333334566655556678888998863  3 6665554

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=98.01  E-value=1.7e-05  Score=67.62  Aligned_cols=146  Identities=18%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-eCCCChh--HHHHhhccccCcceee----eeccCCHHHHhC------
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDALT------  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al~------  113 (270)
                      ++|.|+||+|++|..++..|+++|.  +|++. +++....  ...++....  ..+..    +....+++++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999998  88884 6653211  111222110  11111    111112333333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 -~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                       +.|+||++||......   .+   ....+..|+.....+++.+.+.   ...+.|+++|....       .    . +.
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~-------~----~-~~  145 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVG-------L----I-GN  145 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHH-------H----H-CC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhh-------c----C-CC
Confidence             7899999998754211   11   2335667777665555555443   23456776664321       0    0 23


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      |..-.++.++.....+-+.+++.+.
T Consensus       146 ~~~~~Y~~sK~a~~~~~~~la~e~~  170 (244)
T 1edo_A          146 IGQANYAAAKAGVIGFSKTAAREGA  170 (244)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccchhhHHHHHHHHHHHHHHhh
Confidence            3333455555555556677777763

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=98.01  E-value=5.5e-05  Score=66.00  Aligned_cols=157  Identities=15%  Similarity=0.169  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|++.|++....  ...++.... ...+..    +....+.+++       +
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  999999975321  122222100 011110    1111222222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHH----HHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|..||......   .+   ....+..|+.....    +.+.+.+....+.|+++|.....            .+
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~------------~~  164 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAAL------------AP  164 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT------------SC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhc------------cC
Confidence            47999999998754221   11   22345667655444    44444444445677777643321            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .|..-.++.++..-..+-+.+|.+++  +..|++.++
T Consensus       165 ~~~~~~Y~asK~a~~~l~~~la~e~~--~~gI~vn~v  199 (266)
T 4egf_A          165 LPDHYAYCTSKAGLVMATKVLARELG--PHGIRANSV  199 (266)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            34344456665555667788888874  334544433

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.01  E-value=3.4e-05  Score=73.41  Aligned_cols=98  Identities=11%  Similarity=0.131  Sum_probs=63.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCC---CCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~---ADvVIi~a  122 (270)
                      +|||+|||+ |.+|..++..|+..|+  +|+++|++.+.  ..++........   +..++++++++++   +|+||++.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g---i~~~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKN---LVFTKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSC---EEECSSHHHHHHTBCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCC---eEEeCCHHHHHhhccCCCEEEEEc
Confidence            468999997 9999999999999998  99999987432  222221100011   2235678777766   99999987


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv  166 (270)
                      ..+               ..+.++++.+.... |+.+||..+|..
T Consensus        77 p~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           77 QAG---------------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             CTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            322               11234445555544 566777677654

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=98.00  E-value=2.9e-05  Score=67.13  Aligned_cols=153  Identities=15%  Similarity=0.133  Sum_probs=84.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHh-------CCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDAL-------TGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al-------~~ADv  117 (270)
                      +++.|+||+|.+|..++..|+.+|.  +|+++|++.....  ..++.. ......-.+....++++++       ...|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELGD-NLYIAQLDVRNRAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-TEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-ceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            4789999999999999999999998  9999999753211  112210 0000000011111222333       36899


Q ss_pred             EEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHH----HHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          118 VIIPAGVPRKPG----MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       118 VIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      +|.+||.....+    .+   ....+..|+.....++    +.+.+. ..+.|+++|.....            .+.|..
T Consensus        78 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~------------~~~~~~  144 (248)
T 3asu_A           78 LVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGSTAGS------------WPYAGG  144 (248)
T ss_dssp             EEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGT------------SCCTTC
T ss_pred             EEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEccchhc------------cCCCCC
Confidence            999998652111    11   2234566765544444    444343 34667777643321            123333


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceE
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~  217 (270)
                      -.++.++.....+-+.++..++  +..|++.
T Consensus       145 ~~Y~asKaa~~~~~~~la~e~~--~~gi~v~  173 (248)
T 3asu_A          145 NVYGATKAFVRQFSLNLRTDLH--GTAVRVT  173 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--TSCCEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHhh--hcCcEEE
Confidence            4455665555567777888764  3345443

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.99  E-value=5.8e-05  Score=65.90  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCcceeeee-ccCC---HHHH------
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFL-GQQQ---LEDA------  111 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~~i~-~t~d---~~~a------  111 (270)
                      +.+++.|+||+|.+|..++..|++.|.  +|++.|.+...   ....++....  ..+..+. .-+|   ++++      
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999998  99998876431   1122232211  1111110 1112   2222      


Q ss_pred             -hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          112 -LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       112 -l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                       +...|++|..||......   .+   ....+..|+.....+++.+...- ..+.|+++|.....           ..+.
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-----------~~~~  161 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK-----------DFSV  161 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTT-----------TCCC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhc-----------cCCC
Confidence             237899999998753211   11   23456788888878887777654 35667777654321           0123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      |..-.++.++..-..+-+.++..++  +..|++.++
T Consensus       162 ~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  195 (270)
T 3is3_A          162 PKHSLYSGSKGAVDSFVRIFSKDCG--DKKITVNAV  195 (270)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            4444466665555667788888875  334544443

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.99  E-value=2.1e-05  Score=67.89  Aligned_cols=153  Identities=16%  Similarity=0.148  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-----HHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-----~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|+++|++.....     ..|+.+.+.   +..+  .....+.+...|++|.
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D~~~~~~---~~~~--~~~~~~~~g~id~lv~   87 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSDA---VDRA--FTAVEEHQGPVEVLVS   87 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHHH---HHHH--HHHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHhcCeeccCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            35799999999999999999999998  9999999753211     112222110   0000  0011222346899999


Q ss_pred             cCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          121 PAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       121 ~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      +||.....   ..+   ....+..|+.....+++.+.+.   ...+.|+++|.....    .        +.|..-.++.
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~----~--------~~~~~~~Y~~  155 (247)
T 1uzm_A           88 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGL----W--------GIGNQANYAA  155 (247)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------CCHHHHH
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhc----c--------CCCCChhHHH
Confidence            99875321   111   2345567766665555554432   234667777654431    0        1233334555


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ++.....+-+.++++++  +..|++.++
T Consensus       156 sK~a~~~~~~~la~e~~--~~gi~v~~v  181 (247)
T 1uzm_A          156 SKAGVIGMARSIARELS--KANVTANVV  181 (247)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            55555567777787764  334544443

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.99  E-value=0.00012  Score=63.84  Aligned_cols=158  Identities=15%  Similarity=0.138  Sum_probs=90.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHH---HhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LED---ALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~---al~~AD  116 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|++.|++....  ...++........+..+. ..++   .++   .+...|
T Consensus        10 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A           10 GKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            34799999999999999999999998  999999975321  122232211011111110 1112   222   234789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ++|.+||......   .+   ....+..|+...    +.+++.+.+. ..+.|+++|.....            .+.+..
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------~~~~~~  154 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIASEAAI------------MPSQEM  154 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGT------------SCCTTC
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcchhhc------------cCCCcc
Confidence            9999998753221   11   223466776664    4445555433 34667766643321            123333


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -.++.++.....+-+.+|..++  +..|++.++.
T Consensus       155 ~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  186 (267)
T 3t4x_A          155 AHYSATKTMQLSLSRSLAELTT--GTNVTVNTIM  186 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEe
Confidence            4455665555667788888875  4456655554

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.99  E-value=7.1e-05  Score=65.50  Aligned_cols=155  Identities=14%  Similarity=0.113  Sum_probs=90.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-h--HHHHhhccccCcceeee-eccCC---HHHH-------h
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-G--VTADISHMDTNAVVRGF-LGQQQ---LEDA-------L  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~--~~~dl~~~~~~~~~~~i-~~t~d---~~~a-------l  112 (270)
                      +.+.|+||+|.+|..++..|++.|.  .|++.+..... .  ...++....  ..+..+ ..-+|   +++.       +
T Consensus        28 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3799999999999999999999998  99888654431 1  112222211  111100 01112   2222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+.+.- ..+.|+++|....          ..  +.|.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~----------~~--~~~~  171 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQV----------GL--LHPS  171 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHH----------HH--CCTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhh----------cc--CCCC
Confidence            47899999998753221   11   23346688887777777766543 3466777764221          01  2444


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .-.++.++..-..+-+.+|.+++  +..|++.++
T Consensus       172 ~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (267)
T 3u5t_A          172 YGIYAAAKAGVEAMTHVLSKELR--GRDITVNAV  203 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEE
Confidence            44566666666678888898875  344544433

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.98  E-value=9.7e-05  Score=63.99  Aligned_cols=115  Identities=12%  Similarity=0.085  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      .+++.|+||+|.+|.+++..|+++|.  +|+++|+++...  ...++....  ..+..    +....+++++       +
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  999999975422  122232211  11111    1111122222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sN  164 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+    .+....+.|+++|.
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence            37899999998643211   11   2234667776655555554    33445677777764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.98  E-value=2.7e-05  Score=69.20  Aligned_cols=100  Identities=13%  Similarity=0.122  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-----C-CccEEEEEeCCCChhHHHHhhc-ccc---C--cc-e-eeeeccCCHHH
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKIN-----P-LVSVLHLYDVVNTPGVTADISH-MDT---N--AV-V-RGFLGQQQLED  110 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~-----g-~~~eV~LvD~~~~~~~~~dl~~-~~~---~--~~-~-~~i~~t~d~~~  110 (270)
                      ++|||+|||+ |.+|+.++..|+..     | +  +|+++|+ +.  ....+.. ...   .  .. . ..+..+++. +
T Consensus         7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~~--~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~   79 (317)
T 2qyt_A            7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-GA--HLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-A   79 (317)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-HH--HHHHHHHHTSEEEECSSCEEEECCSEEESCH-H
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-HH--HHHHHHhcCCeEEEeCCCCeEEecceEecCc-c
Confidence            4579999998 99999999999887     8 7  9999998 32  2222222 100   0  00 0 001123454 5


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      +++++|+||++.....                +.++++.+..+. ++..|+.++|..+
T Consensus        80 ~~~~~D~vil~vk~~~----------------~~~v~~~i~~~l~~~~~iv~~~nG~~  121 (317)
T 2qyt_A           80 EVGTVDYILFCTKDYD----------------MERGVAEIRPMIGQNTKILPLLNGAD  121 (317)
T ss_dssp             HHCCEEEEEECCSSSC----------------HHHHHHHHGGGEEEEEEEEECSCSSS
T ss_pred             ccCCCCEEEEecCccc----------------HHHHHHHHHhhcCCCCEEEEccCCCC
Confidence            6889999999974321                134455565543 5667777788766

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.98  E-value=3.4e-05  Score=67.07  Aligned_cols=148  Identities=12%  Similarity=0.142  Sum_probs=88.9

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCcc-ee-eeeccCCHHHHhC-------C
Q 024248           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV-VR-GFLGQQQLEDALT-------G  114 (270)
Q Consensus        47 mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~-~~-~i~~t~d~~~al~-------~  114 (270)
                      ++|.|+||+  |.+|..++..|+++|.  +|+++|++.. .....++........ +. .+....+++++++       .
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            479999998  8999999999999998  9999999762 112222321100000 00 0111112222332       6


Q ss_pred             CCEEEEcCCCCCCC---C-----Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          115 MDIVIIPAGVPRKP---G-----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       115 ADvVIi~ag~~~~~---g-----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .|++|++||.....   +     .+   ....+..|+.....+++.+.+.. +.+.|+++|.....            .+
T Consensus        88 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~  155 (265)
T 1qsg_A           88 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------RA  155 (265)
T ss_dssp             EEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT------------SB
T ss_pred             CCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhc------------cC
Confidence            79999999865320   1     11   23456788888888888887653 23567777643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .|..-.++.++.....+-+.++..++
T Consensus       156 ~~~~~~Y~~sK~a~~~~~~~la~e~~  181 (265)
T 1qsg_A          156 IPNYNVMGLAKASLEANVRYMANAMG  181 (265)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            34444566666666667788888874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.98  E-value=4.1e-05  Score=66.83  Aligned_cols=148  Identities=16%  Similarity=0.101  Sum_probs=83.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceeeee-ccCC---HHHHh-----
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFL-GQQQ---LEDAL-----  112 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~i~-~t~d---~~~al-----  112 (270)
                      +.++|.|+||+|.+|..++..|+++|.  +|++++++....   ...++....  ..+..+. .-+|   .++++     
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~  103 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQ  103 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999964311   111222111  1111110 0112   22222     


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHH----HHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       113 --~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                        ...|++|.+||......   .+   ....+..|+.....+    .+.+++. ..+.|+++|...       +.    .
T Consensus       104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~-------~~----~  171 (271)
T 4iin_A          104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS-RFGSVVNVASII-------GE----R  171 (271)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHH-------HH----H
T ss_pred             hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEEEEechh-------hc----C
Confidence              37899999998754321   11   223456666555444    4444433 345666665321       11    1


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCC
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGL  209 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v  209 (270)
                       +.+..-.++.++.....+-+.++..+.-
T Consensus       172 -~~~~~~~Y~asK~a~~~~~~~la~e~~~  199 (271)
T 4iin_A          172 -GNMGQTNYSASKGGMIAMSKSFAYEGAL  199 (271)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCCchHhHHHHHHHHHHHHHHHHHHHH
Confidence             3444445666655555677778887643

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.98  E-value=1.7e-05  Score=68.89  Aligned_cols=147  Identities=16%  Similarity=0.091  Sum_probs=83.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hH--HHHhhccccCcceee----eeccCCHHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GV--TADISHMDTNAVVRG----FLGQQQLEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~--~~dl~~~~~~~~~~~----i~~t~d~~~al------  112 (270)
                      .++|.|+||+|.+|..++..|++.|.  +|+++|++... ..  ..++... ....+..    +....++++++      
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHH-HTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhc-cCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            34799999999999999999999998  99999997543 21  1122110 0001110    11111222223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHH----HHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                       ...|++|.+||......   .+   ....+..|+.....++    +.+++. ..+.||++|.....            .
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------~  147 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASAHGL------------V  147 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------S
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECcHHhC------------c
Confidence             37999999998653211   11   2234566766544444    444433 24567777643321            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +.|..-.++.++.....+-+.++..++
T Consensus       148 ~~~~~~~Y~~sK~a~~~~~~~la~e~~  174 (260)
T 1x1t_A          148 ASANKSAYVAAKHGVVGFTKVTALETA  174 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence            233333455565555567777888774

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.98  E-value=6e-05  Score=66.25  Aligned_cols=156  Identities=14%  Similarity=0.065  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l  112 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++....  ..+..+. .-+|   ++++       +
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  999999975321  222332211  1111110 1112   2222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh-----CCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-----~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+.+.     ...+.||++|.....            .
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~------------~  167 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGK------------Q  167 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGT------------S
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhc------------c
Confidence            37899999998753211   11   2334667877766666665431     234667777643321            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.+..-.++.++..-..+-+.+|..++  +..|++.++
T Consensus       168 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  203 (279)
T 3sju_A          168 GVMYAAPYTASKHGVVGFTKSVGFELA--KTGITVNAV  203 (279)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHH--hhCcEEEEE
Confidence            233333455555555567788888864  334544433

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.97  E-value=2e-05  Score=61.32  Aligned_cols=99  Identities=13%  Similarity=0.099  Sum_probs=57.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC---HHHH-hCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d---~~~a-l~~ADvVIi~a  122 (270)
                      +||+|+|+ |.+|..++..|...|.  +|+++|+++..  ...+.... ...+.  ...++   ++++ +.++|+||+++
T Consensus         7 ~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~~~--~d~~~~~~l~~~~~~~~d~vi~~~   78 (144)
T 2hmt_A            7 KQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEK--VNAYASYA-THAVI--ANATEENELLSLGIRNFEYVIVAI   78 (144)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHH--HHTTTTTC-SEEEE--CCTTCHHHHHTTTGGGCSEEEECC
T ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhC-CEEEE--eCCCCHHHHHhcCCCCCCEEEECC
Confidence            37999998 9999999999999998  89999986432  11121110 00010  01112   2232 67899999987


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      +..          ...|.    .++..+++.+++.++...+|+..
T Consensus        79 ~~~----------~~~~~----~~~~~~~~~~~~~ii~~~~~~~~  109 (144)
T 2hmt_A           79 GAN----------IQAST----LTTLLLKELDIPNIWVKAQNYYH  109 (144)
T ss_dssp             CSC----------HHHHH----HHHHHHHHTTCSEEEEECCSHHH
T ss_pred             CCc----------hHHHH----HHHHHHHHcCCCeEEEEeCCHHH
Confidence            532          12232    24455556667633333445543

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.97  E-value=1.8e-05  Score=68.46  Aligned_cols=156  Identities=18%  Similarity=0.211  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|+++....  ..++....  ..+. .+....+++++       +...
T Consensus         9 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            9 GKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNG--KGMALNVTNPESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE--EEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc--eEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            34799999999999999999999998  9999999753211  11221110  0000 01111122222       3379


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|..||......   .+   ....+..|+.....+++.+    .+. ..+.|+++|...       +.    . +.|.
T Consensus        85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~-------~~----~-~~~~  151 (248)
T 3op4_A           85 DILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVGSVV-------GT----M-GNAG  151 (248)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHH-------HH----H-CCTT
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchh-------hc----C-CCCC
Confidence            99999998754221   11   2234566766555555544    333 346677666321       11    1 3444


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .-.++.++..-..+-+.+|.+++  +..|++.++-
T Consensus       152 ~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v~  184 (248)
T 3op4_A          152 QANYAAAKAGVIGFTKSMAREVA--SRGVTVNTVA  184 (248)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHH--HhCeEEEEEe
Confidence            44566666555667788888874  3345544443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.97  E-value=3.7e-05  Score=61.61  Aligned_cols=70  Identities=14%  Similarity=0.238  Sum_probs=46.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhh-ccccCcceeeeec-cCC---HHHH-hCCCCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-HMDTNAVVRGFLG-QQQ---LEDA-LTGMDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~-~~~~~~~~~~i~~-t~d---~~~a-l~~ADvV  118 (270)
                      ..++|+|+|+ |.+|..++..|...|.  +|+++|+++....  .+. ...  ..  .+.. ..+   ++++ +.++|+|
T Consensus        18 ~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~~--~~~~~~g--~~--~~~~d~~~~~~l~~~~~~~ad~V   88 (155)
T 2g1u_A           18 KSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAFH--RLNSEFS--GF--TVVGDAAEFETLKECGMEKADMV   88 (155)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGGG--GSCTTCC--SE--EEESCTTSHHHHHTTTGGGCSEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHH--HHHhcCC--Cc--EEEecCCCHHHHHHcCcccCCEE
Confidence            3579999998 9999999999999998  9999999754321  121 110  01  1111 112   3333 6789999


Q ss_pred             EEcCC
Q 024248          119 IIPAG  123 (270)
Q Consensus       119 Ii~ag  123 (270)
                      |++.+
T Consensus        89 i~~~~   93 (155)
T 2g1u_A           89 FAFTN   93 (155)
T ss_dssp             EECSS
T ss_pred             EEEeC
Confidence            99974

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.97  E-value=0.0001  Score=63.28  Aligned_cols=157  Identities=17%  Similarity=0.202  Sum_probs=89.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-h--hHHHHhhccccCcc-ee-eeeccCCHHHHh-------CC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTNAV-VR-GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~--~~~~dl~~~~~~~~-~~-~i~~t~d~~~al-------~~  114 (270)
                      +++.|+||+|.+|.+++..|+++|.  +|++.|+... .  ....++........ +. .+....++++++       ..
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999998  9999988542 1  11222322111000 00 011111222223       37


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|++|.+||......   .+   ....+..|+.....+++.+    .+. ..+.|+++|.-.       ..     .+.|
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~-------~~-----~~~~  149 (246)
T 3osu_A           83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSVV-------GA-----VGNP  149 (246)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHH-------HH-----HCCT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchh-------hc-----CCCC
Confidence            899999998753211   11   2235667776666555555    443 345666666321       11     1345


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ..-.++.++.....+-+.+|..++  +..+++.++.
T Consensus       150 ~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v~  183 (246)
T 3osu_A          150 GQANYVATKAGVIGLTKSAARELA--SRGITVNAVA  183 (246)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            444566666666667788888774  3345554443

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.96  E-value=9e-05  Score=65.22  Aligned_cols=148  Identities=13%  Similarity=0.067  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-Chh--HHHHhhccccCcceee----eec----cCCHHHH---
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG--VTADISHMDTNAVVRG----FLG----QQQLEDA---  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-~~~--~~~dl~~~~~~~~~~~----i~~----t~d~~~a---  111 (270)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++. ...  ...++... ....+..    +..    ..+++++   
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~~~~~v~~~~~~   99 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELNKE-RSNTAVVCQADLTNSNVLPASCEEIINS   99 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhh-cCCceEEEEeecCCccCCHHHHHHHHHH
Confidence            45799999999999999999999998  999999986 321  11223200 0011110    111    1112222   


Q ss_pred             ----hCCCCEEEEcCCCCCCC--------C-----Cc---hhhhHHhhHHHHHHHHHHHhHhC---C------CCEEEEe
Q 024248          112 ----LTGMDIVIIPAGVPRKP--------G-----MT---RDDLFNINAGIVKTLCEGIAKCC---P------KAIVNLI  162 (270)
Q Consensus       112 ----l~~ADvVIi~ag~~~~~--------g-----~~---r~~~~~~N~~i~~~i~~~i~~~~---p------~a~viv~  162 (270)
                          +...|++|.+||.....        .     .+   ....+..|+.....+++.+....   .      .+.||++
T Consensus       100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~i  179 (288)
T 2x9g_A          100 CFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNL  179 (288)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEE
Confidence                33789999999864321        1     11   12345667666655655554432   1      4567777


Q ss_pred             cCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       163 sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      |.....            .+.|..-.++.++.....+-+.++..++
T Consensus       180 sS~~~~------------~~~~~~~~Y~asKaa~~~l~~~la~e~~  213 (288)
T 2x9g_A          180 CDAMVD------------QPCMAFSLYNMGKHALVGLTQSAALELA  213 (288)
T ss_dssp             CCTTTT------------SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             eccccc------------CCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            643321            1233333455655555567777888773

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.96  E-value=2.3e-05  Score=68.59  Aligned_cols=152  Identities=18%  Similarity=0.196  Sum_probs=88.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-----HHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-----~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.....     ..|+.+...   +..+  .....+.+...|++|.
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~~---~~~~--~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAAY---ADGL--PGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHHH---HHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHHH---HHHH--HHHHHHhcCCCCEEEE
Confidence            35799999999999999999999998  9999999753211     112221110   0000  0012233458999999


Q ss_pred             cCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          121 PAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       121 ~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      +||......   .+   ....+..|+.....+++.+    ++. ..+.||++|.....            .+.|..-.++
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~------------~~~~~~~~Y~  167 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCWGL------------RPGPGHALYC  167 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTT------------BCCTTBHHHH
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHhC------------CCCCCChHHH
Confidence            998753211   11   2234567766665555554    443 35667777654331            1233333456


Q ss_pred             echhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .++.....+-+.++..++  +..|++.++
T Consensus       168 asKaa~~~l~~~la~e~~--~~gI~vn~v  194 (266)
T 3uxy_A          168 LTKAALASLTQCMGMDHA--PQGIRINAV  194 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            665555667778888874  334544333

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.96  E-value=6e-05  Score=64.92  Aligned_cols=154  Identities=16%  Similarity=0.137  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l  112 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++....  ..+..+. .-+|   ++++       +
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  999999975321  122232111  1111110 1112   2222       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      ...|++|.+||.....   ..+   ....+..|+.....+++.+..+.  ..+.|+++|.-...            .+.|
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~  150 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGR------------VNVR  150 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT------------CCCT
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhc------------CCCC
Confidence            4799999999865321   112   22345667665555555443221  11677777643221            1233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceE
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~  217 (270)
                      ..-.++.++.....+-+.++..+.  +..|++.
T Consensus       151 ~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~  181 (247)
T 2jah_A          151 NAAVYQATKFGVNAFSETLRQEVT--ERGVRVV  181 (247)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhc--ccCcEEE
Confidence            333455555444556677777764  3344443

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.96  E-value=9.3e-05  Score=64.83  Aligned_cols=146  Identities=16%  Similarity=0.154  Sum_probs=83.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC----------hhH----HHHhhccccCcceee----eeccCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PGV----TADISHMDTNAVVRG----FLGQQQ  107 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~----------~~~----~~dl~~~~~~~~~~~----i~~t~d  107 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|+++.          ...    ...+...  ...+..    +....+
T Consensus        10 ~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~   85 (281)
T 3s55_A           10 GKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVKDRAA   85 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHH
Confidence            34799999999999999999999998  9999999631          111    1111111  111111    111112


Q ss_pred             HHHH-------hCCCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcH
Q 024248          108 LEDA-------LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTV  170 (270)
Q Consensus       108 ~~~a-------l~~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~  170 (270)
                      +++.       +...|++|.+||.....   ..+   ....+..|+.....+++.+    .+. ..+.||++|.....  
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~--  162 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR-NYGRIVTVSSMLGH--  162 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGG--
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECChhhc--
Confidence            2222       33799999999875321   112   2334567776665555554    433 34667777643221  


Q ss_pred             HHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          171 PIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       171 ~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                                .+.+..-.++.++.....+-+.+|.+++
T Consensus       163 ----------~~~~~~~~Y~asK~a~~~~~~~la~e~~  190 (281)
T 3s55_A          163 ----------SANFAQASYVSSKWGVIGLTKCAAHDLV  190 (281)
T ss_dssp             ----------SCCTTCHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             ----------CCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence                      1233333455665555567788888764

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.96  E-value=4.5e-05  Score=66.79  Aligned_cols=154  Identities=11%  Similarity=0.079  Sum_probs=88.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH------HHHhhccccCcceeeeeccCCHHHHhCCCCE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------TADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~------~~dl~~~~~~~~~~~i~~t~d~~~al~~ADv  117 (270)
                      -+.++|.|+||+|.+|..++..|++.|.  +|+++|++.....      ..|+.+...   +..+  .....+.+...|+
T Consensus        12 ~~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~Dv~~~~~---v~~~--~~~~~~~~g~iD~   84 (269)
T 3vtz_A           12 FTDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDVNVSDHFKIDVTNEEE---VKEA--VEKTTKKYGRIDI   84 (269)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CTTSSEEEECCTTCHHH---HHHH--HHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhccCceeEEEecCCCHHH---HHHH--HHHHHHHcCCCCE
Confidence            3345899999999999999999999998  9999999764211      112222110   0000  0012233458999


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      +|.+||......   .+   ....+..|+.....+++.    +.+. ..+.|+++|.....            .+.+..-
T Consensus        85 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~------------~~~~~~~  151 (269)
T 3vtz_A           85 LVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI-GHGSIINIASVQSY------------AATKNAA  151 (269)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SBCTTCH
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhc------------cCCCCCh
Confidence            999998753221   11   123455676655555544    4333 34566666643221            1233333


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .++.++.....+-+.+|..++-   .|++.++-
T Consensus       152 ~Y~asKaa~~~l~~~la~e~~~---~i~vn~v~  181 (269)
T 3vtz_A          152 AYVTSKHALLGLTRSVAIDYAP---KIRCNAVC  181 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT---TEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHhcC---CCEEEEEE
Confidence            4566665556678888888853   35544443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.96  E-value=6.6e-05  Score=70.29  Aligned_cols=139  Identities=19%  Similarity=0.214  Sum_probs=85.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC---HHHH-hCCCCEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVI  119 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d---~~~a-l~~ADvVI  119 (270)
                      ++.++|.|+|. |.+|..++..|...|+  +|+++|.++...  ..+.... ...+.  -..++   ++++ +.+||+||
T Consensus         2 ~~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~v--~~~~~~g-~~vi~--GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            2 SHGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDHI--ETLRKFG-MKVFY--GDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHHH--HHHHHTT-CCCEE--SCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHHH--HHHHhCC-CeEEE--cCCCCHHHHHhcCCCccCEEE
Confidence            34678999998 9999999999999998  999999985422  2222211 11110  01112   3333 78999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHH
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r  198 (270)
                      ++.+..           ..|    ..++..+++.+|+..++.-+ ++..      .+.+.+. |.  +.|+--+...+.+
T Consensus        74 v~~~~~-----------~~n----~~i~~~ar~~~p~~~Iiara~~~~~------~~~L~~~-Ga--d~Vi~~~~~~a~~  129 (413)
T 3l9w_A           74 NAIDDP-----------QTN----LQLTEMVKEHFPHLQIIARARDVDH------YIRLRQA-GV--EKPERETFEGALK  129 (413)
T ss_dssp             ECCSSH-----------HHH----HHHHHHHHHHCTTCEEEEEESSHHH------HHHHHHT-TC--SSCEETTHHHHHH
T ss_pred             ECCCCh-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHC-CC--CEEECccHHHHHH
Confidence            986311           233    45677777888987666554 4433      2333433 33  4565545555566


Q ss_pred             HHHHHHHHhCCCCCcc
Q 024248          199 ANTFVAEVLGLDPREV  214 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v  214 (270)
                      +-..+-..+|+++..+
T Consensus       130 la~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          130 TGRLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHcCCCHHHH
Confidence            6666667777777766

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.96  E-value=7.2e-05  Score=65.50  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=86.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeee-eccCC---HHH-------HhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGF-LGQQQ---LED-------ALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i-~~t~d---~~~-------al~  113 (270)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++....  ...++....  ..+..+ ..-+|   +++       .+.
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  999999975321  122332211  111100 01112   222       234


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHH----HHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|++|.+||......   .+   ....+..|+.....+    ++.+++. ..+.||++|.....            .+.
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~------------~~~  147 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIGSIGAL------------SVV  147 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------CCC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEcCHHHc------------ccC
Confidence            7899999998753221   11   223456676555444    4444433 34667776643221            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      |..-.++.++..-..+-+.++..+   + .|++.++-
T Consensus       148 ~~~~~Y~asKaal~~l~~~la~e~---~-gIrvn~v~  180 (264)
T 3tfo_A          148 PTAAVYCATKFAVRAISDGLRQES---T-NIRVTCVN  180 (264)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHC---S-SEEEEEEE
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhC---C-CCEEEEEe
Confidence            333345555544455677778775   2 56554443

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.95  E-value=4.1e-05  Score=67.17  Aligned_cols=156  Identities=10%  Similarity=0.114  Sum_probs=89.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|++.|++....  ...++....  ..+..    +....++++++       
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            35799999999999999999999998  999999875321  122332211  11110    11111222223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHH----HHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++    .+.+. ..+.||++|.....            .+
T Consensus       102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iV~isS~~~~------------~~  168 (271)
T 4ibo_A          102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR-GYGKIVNIGSLTSE------------LA  168 (271)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SB
T ss_pred             CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEccHHhC------------CC
Confidence            37899999998753221   11   22346667665555544    44433 34567766643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .+..-.++.++.....+-+.+|.+++  +..|++.++.
T Consensus       169 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  204 (271)
T 4ibo_A          169 RATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQANAIG  204 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEEE
Confidence            33334456665555667788888874  3445554444

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.95  E-value=2.5e-05  Score=68.65  Aligned_cols=157  Identities=13%  Similarity=0.100  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l  112 (270)
                      .++|.|+||+|.+|..++..|+.+|.  +|+++|++....  ...++.... ...+..+. .-+|   ++++       +
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  999999975321  111221110 00111110 1112   2222       2


Q ss_pred             CCCCEEEEc-CCCCCCC--CCc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          113 TGMDIVIIP-AGVPRKP--GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       113 ~~ADvVIi~-ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .+.|++|++ +|....+  ..+   ....+..|+.....+++.+....  ..+.|+++|.....            .+.|
T Consensus       105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~------------~~~~  172 (286)
T 1xu9_A          105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK------------VAYP  172 (286)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT------------SCCT
T ss_pred             CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccc------------cCCC
Confidence            379999998 5654321  111   12345667665555555443321  13566666533221            1233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceE
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP  217 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~  217 (270)
                      ..-.++.++.....+-+.++..++.....+++.
T Consensus       173 ~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~  205 (286)
T 1xu9_A          173 MVAAYSASKFALDGFFSSIRKEYSVSRVNVSIT  205 (286)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence            333455555544556666777764333445443

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.95  E-value=3.8e-05  Score=67.51  Aligned_cols=154  Identities=16%  Similarity=0.087  Sum_probs=84.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHhC-------
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDALT-------  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al~-------  113 (270)
                      +++.|+||+|.+|..++..|+.+|.  +|+++|++....  ...++...   ..+..    +....+++++++       
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999998  999999975321  11222211   01111    111112333343       


Q ss_pred             CCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ..|++|.+||.....+    .+   ....+..|+..    ++.+++.+.+......|+++|.....            .+
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~------------~~  164 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGK------------WP  164 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGT------------SC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhc------------cC
Confidence            3599999998753211    11   22345666655    44455555554333267766643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .|..-.++.++.....+-+.++..++  +..|++.++
T Consensus       165 ~~~~~~Y~asKaa~~~l~~~la~el~--~~gIrvn~v  199 (272)
T 2nwq_A          165 YPGSHVYGGTKAFVEQFSLNLRCDLQ--GTGVRVTNL  199 (272)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHTTCT--TSCCEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            33333455555444456666766653  344544333

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.95  E-value=4.7e-05  Score=67.52  Aligned_cols=158  Identities=13%  Similarity=0.121  Sum_probs=92.0

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcc-ee-eeeccCCHHHH-------hC
Q 024248           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAV-VR-GFLGQQQLEDA-------LT  113 (270)
Q Consensus        46 ~mKI~IIGa~G~--VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~  113 (270)
                      .+++.|+||+|+  +|..++..|++.|.  +|++.|+++.. ....++........ +. .+....+++++       +.
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            347999999988  99999999999998  99999987421 11122211100000 00 01111112222       24


Q ss_pred             CCCEEEEcCCCCCC-----C--CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ..|++|.+||....     +  ..+   ....+..|+.....+++.+...- ..+.|+++|.....            .+
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~------------~~  176 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAE------------KV  176 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGT------------SB
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhc------------cC
Confidence            78999999987531     1  111   23456778877777777776654 35677777643321            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .|..-.++.++..-..+-+.+|..++  +..|++.++
T Consensus       177 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  211 (293)
T 3grk_A          177 MPNYNVMGVAKAALEASVKYLAVDLG--PQNIRVNAI  211 (293)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHh--HhCCEEEEE
Confidence            44444566666555667788888874  334544333

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.95  E-value=1.4e-05  Score=70.68  Aligned_cols=169  Identities=14%  Similarity=0.039  Sum_probs=92.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhC---CCCE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALT---GMDI  117 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~---~ADv  117 (270)
                      +.++|.|+||+|.+|..++..|+++|.  +|+++|++.....  ++.... ...+..    +....+++++++   ..|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~   89 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGE--AAARTM-AGQVEVRELDLQDLSSVRRFADGVSGADV   89 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            345899999999999999999999998  9999999753221  111110 111111    111112333444   6699


Q ss_pred             EEEcCCCCCCCC----CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHH-HHHHHHHhCCCCCCCeeeec
Q 024248          118 VIIPAGVPRKPG----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI-AAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       118 VIi~ag~~~~~g----~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i-~t~~~~~~sg~p~~kviG~t  192 (270)
                      +|++||......    ......+..|+.....+++.+...... .|+++|......... ..........+++...++.+
T Consensus        90 lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s  168 (291)
T 3rd5_A           90 LINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQS  168 (291)
T ss_dssp             EEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHHHH
T ss_pred             EEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeechhhccCCCCcccccccccCCCCcchHHHH
Confidence            999998643211    123356788998888888888765433 566555432210000 00000000001111235556


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.....+-+.++++++-.-..|++..+
T Consensus       169 K~a~~~~~~~la~e~~~~g~~i~v~~v  195 (291)
T 3rd5_A          169 KLANLLFTSELQRRLTAAGSPLRALAA  195 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCCEEEEEe
Confidence            655566777777777533222444443

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.94  E-value=3.7e-05  Score=67.83  Aligned_cols=156  Identities=15%  Similarity=0.127  Sum_probs=87.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------hC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------LT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l~  113 (270)
                      +++.|+||+|.+|..++..|+..|.  +|+++|++....  ...++....  ..+..    +....+.++.       +.
T Consensus         9 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            9 KIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  999999975321  122332211  11111    1111112222       34


Q ss_pred             CCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|++|.+||.....+    .+   ....+..|+.....+++.+...   ...+.|+++|.....           ..++
T Consensus        85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~-----------~~~~  153 (280)
T 3tox_A           85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGH-----------TAGF  153 (280)
T ss_dssp             CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTT-----------TBCC
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhC-----------cCCC
Confidence            7899999998642211    11   2234566766555555544332   234667776644331           0123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      |..-.++.++.....+-+.+|..++-  ..|++.++
T Consensus       154 ~~~~~Y~asKaa~~~l~~~la~e~~~--~gIrvn~v  187 (280)
T 3tox_A          154 AGVAPYAASKAGLIGLVQALAVELGA--RGIRVNAL  187 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHT--TTEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhh--cCeEEEEE
Confidence            43444666655556677788888743  33444333

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.94  E-value=3.2e-05  Score=73.78  Aligned_cols=101  Identities=13%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc-ccCcceeeeeccCCHHHHhC---CCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDALT---GMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~-~~~~~~~~i~~t~d~~~al~---~ADvVIi~a  122 (270)
                      |||+|||+ |.+|+.++..|+..|+  +|+++|++.+..  .++... ...+.-..+..+++++++++   ++|+||++.
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaV   76 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKS--EEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHH--HHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEec
Confidence            79999997 9999999999999998  999999975322  122211 00000001233567777665   599999997


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~  167 (270)
                      ..+               ..+.++++.+.... |+.+||..+|...
T Consensus        77 p~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~  107 (478)
T 1pgj_A           77 QAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHF  107 (478)
T ss_dssp             CCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred             CCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence            322               11233444555444 5667777777653

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.94  E-value=7.2e-05  Score=64.40  Aligned_cols=159  Identities=14%  Similarity=0.106  Sum_probs=88.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC-CCCh--hHHHHhhccccCcce-e-eeeccCCHHHH-------
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTP--GVTADISHMDTNAVV-R-GFLGQQQLEDA-------  111 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~-~~~~--~~~~dl~~~~~~~~~-~-~i~~t~d~~~a-------  111 (270)
                      .+.++|.|+||+|.+|..++..|+++|.  .|++.|. +...  ....++......... . .+....+++++       
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            3445899999999999999999999998  8999884 3322  112222221110000 0 01111112222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      +...|++|.+||......   .+   ....+..|+...    +.+++.+.+.. .+.|+++|.....            .
T Consensus        89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~------------~  155 (256)
T 3ezl_A           89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQ------------K  155 (256)
T ss_dssp             TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCGG------------G
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhc------------c
Confidence            237899999998753211   11   233566776664    44455555443 4667777654331            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.+..-.++.++.....+-+.+++.+.  +..+++.++
T Consensus       156 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  191 (256)
T 3ezl_A          156 GQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVTVNTV  191 (256)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence            244444566665555667788888874  334554444

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.93  E-value=4.5e-05  Score=68.25  Aligned_cols=66  Identities=21%  Similarity=0.288  Sum_probs=45.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ..||++||. |.+|..+|..|+..|+  +|+.||+++.+.  .++....       ....++++++++++|+||++..
T Consensus         5 s~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~--~~l~~~G-------~~~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            5 SEKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASKA--EPLTKLG-------ATVVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT-------CEECSSGGGGCCTTCEEEECCS
T ss_pred             CCcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHcC-------CeEeCCHHHHHhcCCceeeecc
Confidence            448999997 9999999999999999  999999976432  2232221       1123467788999999999863

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.93  E-value=2.2e-05  Score=68.23  Aligned_cols=153  Identities=17%  Similarity=0.187  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeee-ccCC---H-------HHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL-GQQQ---L-------EDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~-~t~d---~-------~~al  112 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|++.|+++....  ..++..     .+..+. .-+|   +       .+.+
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFGP-----RVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----cceEEEccCCCHHHHHHHHHHHHHHh
Confidence            34799999999999999999999998  9999999753211  111210     010000 0112   1       1233


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+...- ..+.|+++|.....            .+.|.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~  148 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE------------GGHPG  148 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGS------------SBCTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhc------------CCCCC
Confidence            47899999998754221   11   23456788888888888776543 24567777643321            12333


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .-.++.++..-..+-+.++.+++  +..|++..+
T Consensus       149 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  180 (255)
T 4eso_A          149 MSVYSASKAALVSFASVLAAELL--PRGIRVNSV  180 (255)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            33455555555567788888874  334544333

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.93  E-value=2.7e-05  Score=68.16  Aligned_cols=156  Identities=19%  Similarity=0.178  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC----------hhH----HHHhhccccCcceee----eeccC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PGV----TADISHMDTNAVVRG----FLGQQ  106 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~----------~~~----~~dl~~~~~~~~~~~----i~~t~  106 (270)
                      +.+++.|+||+|.+|..++..|+++|.  +|+++|++..          ...    ..++...  ...+..    +....
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCCCHH
Confidence            345799999999999999999999998  9999998721          111    1112111  111111    11111


Q ss_pred             CHHHHh-------CCCCEEEEcCCCCCCCCC--chhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHH
Q 024248          107 QLEDAL-------TGMDIVIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIA  173 (270)
Q Consensus       107 d~~~al-------~~ADvVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~  173 (270)
                      ++++++       ...|++|.+||.......  +....+..|+.....+++.    +.+....+.|+++|......    
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~----  163 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLA----  163 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS----
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcC----
Confidence            222233       378999999987532211  1234566676655555554    44444456777776432210    


Q ss_pred             HHHHHHhCCC----CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEE
Q 024248          174 AEVFKKVGTY----DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV  218 (270)
Q Consensus       174 t~~~~~~sg~----p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V  218 (270)
                              +.    |..-.++.++.....+-+.+|..++  +..|++.+
T Consensus       164 --------~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~  202 (278)
T 3sx2_A          164 --------GVGSADPGSVGYVAAKHGVVGLMRVYANLLA--GQMIRVNS  202 (278)
T ss_dssp             --------CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             --------CCccCCCCchHhHHHHHHHHHHHHHHHHHHh--ccCcEEEE
Confidence                    11    1111244455445567777888775  33344433

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.93  E-value=3.1e-05  Score=67.28  Aligned_cols=156  Identities=14%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHH-------Hh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LED-------AL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~-------al  112 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++....  ..+..+. .-+|   +++       .+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999998  999999975321  122232211  1111110 1112   222       23


Q ss_pred             CCCCEEEEcCCCC-CCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVP-RKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~-~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|.+||.. ....   .+   ....+..|+.....+++.+.+.   ...+.||++|....           . .+
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~-----------~-~~  150 (262)
T 1zem_A           83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAG-----------V-KG  150 (262)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHH-----------H-SC
T ss_pred             CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhh-----------c-cC
Confidence            4789999999864 2111   11   2234566766555555554432   12456776663211           0 12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .|..-.++.++.....+-+.++..+.  +..|++.++
T Consensus       151 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v  185 (262)
T 1zem_A          151 PPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAI  185 (262)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHH--hhCeEEEEE
Confidence            23223355555444556677777764  334544333

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.93  E-value=3.2e-05  Score=69.73  Aligned_cols=67  Identities=16%  Similarity=0.141  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCC---h--hHHHHhhccccCcceeeeeccC-CHHHHhCCCCE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---P--GVTADISHMDTNAVVRGFLGQQ-QLEDALTGMDI  117 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~---~--~~~~dl~~~~~~~~~~~i~~t~-d~~~al~~ADv  117 (270)
                      +.|||+|||+ |.+|..++..|+..| +  +|+++|+++.   +  .....+....       +  .+ ++++++++||+
T Consensus        23 M~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g-------~--~~~s~~e~~~~aDv   90 (317)
T 4ezb_A           23 MMTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG-------V--EPLDDVAGIACADV   90 (317)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT-------C--EEESSGGGGGGCSE
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC-------C--CCCCHHHHHhcCCE
Confidence            3579999997 999999999999999 8  9999999752   1  1122222211       1  23 56688999999


Q ss_pred             EEEcCC
Q 024248          118 VIIPAG  123 (270)
Q Consensus       118 VIi~ag  123 (270)
                      ||++..
T Consensus        91 Vi~avp   96 (317)
T 4ezb_A           91 VLSLVV   96 (317)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            999974

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.92  E-value=2e-05  Score=70.66  Aligned_cols=113  Identities=8%  Similarity=0.121  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccc-----cC-cceeeeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TN-AVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~-----~~-~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      +|||+|+|+ |.+|+.++..|. .|.  +|.++++++....  .+....     .. .....+..  + .++..++|+||
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~--~l~~~G~~~~~~~~~~~~~~~~--~-~~~~~~~D~vi   72 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAA--AIQSEGIRLYKGGEEFRADCSA--D-TSINSDFDLLV   72 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHH--HHHHHCEEEEETTEEEEECCEE--E-SSCCSCCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHH--HHHhCCceEecCCCeecccccc--c-ccccCCCCEEE
Confidence            589999998 999999999999 887  9999998743211  111100     00 00010111  1 23567999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ++.-..                .+.++++.++...++. |+.+.|-++     ..+.+.+.  +|.+++++.
T Consensus        73 lavK~~----------------~~~~~l~~l~~~~~~~-ivs~~nGi~-----~~e~l~~~--~~~~~vl~g  120 (307)
T 3ego_A           73 VTVKQH----------------QLQSVFSSLERIGKTN-ILFLQNGMG-----HIHDLKDW--HVGHSIYVG  120 (307)
T ss_dssp             ECCCGG----------------GHHHHHHHTTSSCCCE-EEECCSSSH-----HHHHHHTC--CCSCEEEEE
T ss_pred             EEeCHH----------------HHHHHHHHhhcCCCCe-EEEecCCcc-----HHHHHHHh--CCCCcEEEE
Confidence            986211                1244556666554556 777778876     22344443  677888654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.92  E-value=2.7e-05  Score=68.34  Aligned_cols=91  Identities=11%  Similarity=0.037  Sum_probs=58.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||+|||+ |.+|..++..|.. |+  +|+++|+++....  .+....    ..   .++ ++++++++|+||++...+ 
T Consensus         2 ~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g----~~---~~~-~~~~~~~~D~vi~~v~~~-   66 (289)
T 2cvz_A            2 EKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEF----GS---EAV-PLERVAEARVIFTCLPTT-   66 (289)
T ss_dssp             CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHH----CC---EEC-CGGGGGGCSEEEECCSSH-
T ss_pred             CeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCC----Cc---ccC-HHHHHhCCCEEEEeCCCh-
Confidence            58999998 9999999999998 88  8999999754321  122111    11   112 456788999999987322 


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCC
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv  166 (270)
                                    ..+.++++.+.+.. ++.+++..+|..
T Consensus        67 --------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 --------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             --------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          01233445554433 456666666643

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.91  E-value=0.0002  Score=61.08  Aligned_cols=162  Identities=15%  Similarity=0.124  Sum_probs=90.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccc-cCcceeeeec-cCC---HHH------
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMD-TNAVVRGFLG-QQQ---LED------  110 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~-~~~~~~~i~~-t~d---~~~------  110 (270)
                      .+.+++.|+||+|.+|..++..|+.+|.  +|+++|+++...  ...++.... ....+..+.. .++   +++      
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence            3445899999999999999999999998  999999975321  112222211 0111110000 012   112      


Q ss_pred             -HhCCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          111 -ALTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       111 -al~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                       .+...|++|++||.....+    .+   ....+..|+.....+++.+...   ...+.|+++|.....           
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~-----------  158 (247)
T 3i1j_A           90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGR-----------  158 (247)
T ss_dssp             HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGT-----------
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhc-----------
Confidence             2347899999998642211    11   2234567776666666655332   234567766643321           


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                       .+.+..-.++.++.....+-+.++..+.- ...+++.++-
T Consensus       159 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~~-~~~i~v~~v~  197 (247)
T 3i1j_A          159 -KGRANWGAYGVSKFATEGLMQTLADELEG-VTAVRANSIN  197 (247)
T ss_dssp             -SCCTTCHHHHHHHHHHHHHHHHHHHHHTT-TSSEEEEEEE
T ss_pred             -CCCCCcchhHHHHHHHHHHHHHHHHHhcC-CCCeEEEEEe
Confidence             12333334566655555677888888742 1345544443

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.91  E-value=4.6e-05  Score=66.22  Aligned_cols=159  Identities=14%  Similarity=0.119  Sum_probs=92.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hh--HHHHhhccccCcc-ee-eeeccCCHHHHh-------C
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTNAV-VR-GFLGQQQLEDAL-------T  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~al-------~  113 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|++.+.... ..  ...++........ +. .+....+.++++       .
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            34799999999999999999999998  9998844332 11  1222322111110 00 011111222223       3


Q ss_pred             CCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          114 GMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      ..|++|..||.....+    .+   ....+..|+.....+++.+...- ..+.|+++|....           ...+.|.
T Consensus        86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~-----------~~~~~~~  154 (259)
T 3edm_A           86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG-----------RDGGGPG  154 (259)
T ss_dssp             SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH-----------HHCCSTT
T ss_pred             CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHh-----------ccCCCCC
Confidence            7899999998542111    11   23456788888888888877653 2456766663211           1123444


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .-.++.++..-..+-+.+|.+++-.   |++.++.
T Consensus       155 ~~~Y~asKaa~~~l~~~la~e~~~~---I~vn~v~  186 (259)
T 3edm_A          155 ALAYATSKGAVMTFTRGLAKEVGPK---IRVNAVC  186 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTT---CEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHCCC---CEEEEEE
Confidence            4456666666667888889988643   5544443

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.91  E-value=0.00011  Score=63.63  Aligned_cols=156  Identities=12%  Similarity=0.081  Sum_probs=88.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHhC------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDALT------  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al~------  113 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++....  ..+..    +....+++++++      
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            34799999999999999999999998  999999976422  222332211  11111    111112223333      


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHH----HHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|++|..||......   .+   ....+..|+.....    +++.+++. ..+.|+++|.....            .+.
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~------------~~~  149 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH-GQGKIFFTGATASL------------RGG  149 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEGGGT------------CCC
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHHc------------CCC
Confidence            6799999998754211   11   22345666555444    44444443 34566666533221            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccce-EEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV-PVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G  220 (270)
                      |..-.++.++..-..+-+.++..++  +..|++ .++.
T Consensus       150 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v~n~v~  185 (252)
T 3h7a_A          150 SGFAAFASAKFGLRAVAQSMARELM--PKNIHVAHLII  185 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhh--hcCCEEEEEec
Confidence            3333455555555567777888874  344555 4444

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.91  E-value=1.1e-05  Score=70.18  Aligned_cols=64  Identities=14%  Similarity=0.133  Sum_probs=46.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|||+ |.+|+.++..|+..| +  +|+++|++++..  ..+...  . .+   ..++++++++ ++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~~--~~~~~~--~-g~---~~~~~~~~~~-~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEKR--ERLEKE--L-GV---ETSATLPELH-SDDVLILAV   65 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHHH--HHHHHH--T-CC---EEESSCCCCC-TTSEEEECS
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHHH--HHHHHh--c-CC---EEeCCHHHHh-cCCEEEEEe
Confidence            79999997 999999999998888 7  999999974322  222221  0 11   1123555677 999999986

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.90  E-value=4.4e-05  Score=69.76  Aligned_cols=91  Identities=14%  Similarity=0.159  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC----CCCEEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT----GMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~----~ADvVIi  120 (270)
                      ..+||+|||+ |.+|.+++..|...|+  +|+++|+++....  ......    +   ..+++++++++    +||+||+
T Consensus         7 ~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~--~a~~~G----~---~~~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            7 ISRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAK--SAVDEG----F---DVSADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHH--HHHHTT----C---CEESCHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHcC----C---eeeCCHHHHHHhcccCCCEEEE
Confidence            3469999997 9999999999999998  9999999753211  111111    0   11345655554    5799999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +..                ...+.++++.+....|+++|+.++
T Consensus        75 avP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AVP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eCC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            862                112344555555556777766554

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.90  E-value=3.7e-05  Score=67.48  Aligned_cols=149  Identities=13%  Similarity=0.106  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhcccc-Ccceeeee-ccCC---HHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT-NAVVRGFL-GQQQ---LEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~-~~~~~~i~-~t~d---~~~al------  112 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|++....  ...++..... ...+..+. .-+|   +++++      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            34799999999999999999999998  999999975321  1122221100 00111110 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC-------Cc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          113 -TGMDIVIIPAGVPRKPG-------MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g-------~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                       ...|++|.+||......       .+   ....+..|+.....+++.+....  ..+.|+++|.....           
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~-----------  152 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAG-----------  152 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGS-----------
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCcccc-----------
Confidence             37899999998653211       11   22345667666655555544321  12667777643221           


Q ss_pred             hCCC-CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          180 VGTY-DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       180 ~sg~-p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                       .+. |..-.++.++.....+-+.++.++.
T Consensus       153 -~~~~~~~~~Y~asK~a~~~~~~~la~e~~  181 (280)
T 1xkq_A          153 -PQAQPDFLYYAIAKAALDQYTRSTAIDLA  181 (280)
T ss_dssp             -SSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence             012 3233355555545556677777653

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.90  E-value=9.3e-05  Score=64.34  Aligned_cols=147  Identities=14%  Similarity=0.105  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-h--hHHHHhhccccCcceeeee-ccCC---HHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~--~~~~dl~~~~~~~~~~~i~-~t~d---~~~al------  112 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|++.+.... .  ....++....  ..+..+. .-+|   +++++      
T Consensus        26 ~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           26 SRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCREVLEHEIAQ  101 (267)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999998  8877654432 1  1122232211  1111110 1112   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                       ...|++|.+||......   .+   ....+..|+.....+++.+    .+....+.|+++|....       .    . 
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~-------~----~-  169 (267)
T 4iiu_A          102 HGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSG-------V----M-  169 (267)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHH-------H----H-
T ss_pred             hCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHh-------c----c-
Confidence             37899999998754221   11   2345567766555555543    33345677777764221       1    1 


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +.+..-.++.++..-..+-+.++..+.
T Consensus       170 ~~~~~~~Y~asKaa~~~~~~~la~e~~  196 (267)
T 4iiu_A          170 GNRGQVNYSAAKAGIIGATKALAIELA  196 (267)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            344444566665555567778888874

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.90  E-value=0.00013  Score=63.66  Aligned_cols=148  Identities=14%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-------  112 (270)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++....  ...++.... ...+..+. .-+|   +++++       
T Consensus        21 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           21 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  999999975321  112221100 01111010 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCC-CCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV-NSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv-~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+...   ...+.||++|... ..            .+
T Consensus        98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------------~~  165 (267)
T 1vl8_A           98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE------------VT  165 (267)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC------------CC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc------------cC
Confidence            37899999998753211   11   1234567776666555554332   2345677666432 21            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .|..-.++.++.....+-+.++..++
T Consensus       166 ~~~~~~Y~asK~a~~~~~~~la~e~~  191 (267)
T 1vl8_A          166 MPNISAYAASKGGVASLTKALAKEWG  191 (267)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhc
Confidence            23333455555555567777887763

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.89  E-value=0.00015  Score=63.96  Aligned_cols=158  Identities=13%  Similarity=0.121  Sum_probs=92.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---------hHHHHhhccccCcceeeee-ccCC---HHHH-
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGFL-GQQQ---LEDA-  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---------~~~~dl~~~~~~~~~~~i~-~t~d---~~~a-  111 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++...         ....++....  ..+..+. .-+|   +++. 
T Consensus         9 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            9 GKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHH
Confidence            34799999999999999999999998  99999998641         1112222111  1111110 1112   2222 


Q ss_pred             ------hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHH
Q 024248          112 ------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       112 ------l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~  176 (270)
                            +...|++|.+||......   .+   ....+..|+.....+++.+...-   ..+.|+++|......       
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-------  157 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLE-------  157 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCS-------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhcc-------
Confidence                  338999999998753211   11   23356688888888888776553   346777777544321       


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                          ..++..-.++.++..-..+-+.+|.+++  +..|++.++-
T Consensus       158 ----~~~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~vn~v~  195 (285)
T 3sc4_A          158 ----PKWLRPTPYMMAKYGMTLCALGIAEELR--DAGIASNTLW  195 (285)
T ss_dssp             ----GGGSCSHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEEE
T ss_pred             ----CCCCCCchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEEe
Confidence                0012223355555545567777888864  3445554443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.89  E-value=5.1e-05  Score=66.52  Aligned_cols=158  Identities=15%  Similarity=0.174  Sum_probs=88.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCHHHH-------hCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQLEDA-------LTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~  114 (270)
                      .+.+.|+||+|.+|..++..|++.|.  +|+++|+++...  ...++........ +. .+....+++++       +..
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           28 KQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            34799999999999999999999998  999999975321  1122221110000 00 01111122222       347


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      .|++|.+||......   .+   ....+..|+.....+++.+...   ...+.||++|...       ..   .  +.|.
T Consensus       106 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~-------~~---~--~~~~  173 (270)
T 3ftp_A          106 LNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVV-------GS---A--GNPG  173 (270)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHH-------HH---H--CCTT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchh-------hC---C--CCCC
Confidence            899999998653211   11   2334667776665555554321   2356677666421       11   1  3444


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .-.++.++..-..+-+.+|..++  +..|++.++
T Consensus       174 ~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  205 (270)
T 3ftp_A          174 QVNYAAAKAGVAGMTRALAREIG--SRGITVNCV  205 (270)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            44466666555667788888874  334544443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.89  E-value=0.00015  Score=62.87  Aligned_cols=148  Identities=14%  Similarity=0.118  Sum_probs=84.2

Q ss_pred             CCeEEEEcCCCc-hHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh------
Q 024248           46 GFKVAVLGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~-VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al------  112 (270)
                      .+++.|+||+|+ +|..++..|+++|.  +|+++|++....  ...++.... ...+..+. .-+|   +++++      
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            457999999874 99999999999998  999999975321  122332211 11111111 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                       ...|++|.+||......   .+   ....+..|+.....+.+.+...    ...+.|+++|.....            .
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------------~  166 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGW------------R  166 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGT------------C
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHc------------C
Confidence             36799999998753221   11   2234566765555555554433    345667766643221            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +.+..-.++.++.....+-+.++..+.
T Consensus       167 ~~~~~~~Y~~sKaa~~~~~~~la~e~~  193 (266)
T 3o38_A          167 AQHSQSHYAAAKAGVMALTRCSAIEAV  193 (266)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            234344466665555667777888764

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.88  E-value=2.7e-05  Score=66.97  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC-CCChh--HHHHhhccccCcceee----eeccCCHHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~-~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al------  112 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++++ ++...  ...++....  ..+..    +....++++++      
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  9999998 43221  112222111  11111    11111222333      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                       ...|++|.+||......   .+   ....+..|+..    .+.+++.+++.. .+.|+++|....       .   .  
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~-------~---~--  146 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIASVVG-------V---T--  146 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHH-------H---H--
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCHHh-------c---C--
Confidence             37999999998753211   11   22345677666    455555555433 456776664321       0   0  


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      +.|..-.++.++..-..+-+.++.++.  +..|++.++
T Consensus       147 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  182 (246)
T 2uvd_A          147 GNPGQANYVAAKAGVIGLTKTSAKELA--SRNITVNAI  182 (246)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            233333355555444556677777764  334544333

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.88  E-value=2.4e-05  Score=66.59  Aligned_cols=146  Identities=16%  Similarity=0.200  Sum_probs=81.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-eCCCChh--HHHHhhccccCcc--ee-eeeccCCHHHH-------hC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPG--VTADISHMDTNAV--VR-GFLGQQQLEDA-------LT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D~~~~~~--~~~dl~~~~~~~~--~~-~i~~t~d~~~a-------l~  113 (270)
                      ++|.|+||+|++|..++..|+++|.  +|+++ +++....  ...++........  +. .+....+++++       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            3799999999999999999999998  89988 6654321  1122221110000  10 01111112222       34


Q ss_pred             CCCEEEEcCCCCCCCC---C---chhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---M---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~---~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      +.|+||++||......   .   +....+..|+..    .+.+++.+++.. .+.|+++|....       .    . +.
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~~~-------~----~-~~  146 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITSVVG-------I----L-GN  146 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHH-------H----H-CC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeChhh-------c----c-CC
Confidence            7999999998653211   1   123445677766    555556665443 356666664321       0    0 23


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHh
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      |..-.++.++.....+-+.+++.+
T Consensus       147 ~~~~~Y~~sK~a~~~~~~~la~e~  170 (245)
T 2ph3_A          147 PGQANYVASKAGLIGFTRAVAKEY  170 (245)
T ss_dssp             SSBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHH
Confidence            333345555555556677777776

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.88  E-value=6.9e-05  Score=66.58  Aligned_cols=148  Identities=14%  Similarity=0.139  Sum_probs=81.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhcccc-Ccceeeee-ccCC---HHHHh-------
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT-NAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~-~~~~~~i~-~t~d---~~~al-------  112 (270)
                      +++.|+||+|.+|..++..|+..|.  +|+++|++....  ...++..... ...+..+. .-+|   +++++       
T Consensus        27 k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           27 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999999998  999999975321  1122221100 00111110 1112   22233       


Q ss_pred             CCCCEEEEcCCCCCCCC-----Cc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g-----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|.+||......     .+   ....+..|+.....+++.+.+..  ..+.||++|.....            .+
T Consensus       105 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~------------~~  172 (297)
T 1xhl_A          105 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAG------------PQ  172 (297)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGS------------SS
T ss_pred             CCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhc------------cC
Confidence            37899999998643211     11   22345667665555555544321  12677777643221            01


Q ss_pred             C-CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 Y-DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~-p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      . |..-.++.++.....+-+.++..+.
T Consensus       173 ~~~~~~~Y~asKaa~~~l~~~la~el~  199 (297)
T 1xhl_A          173 AHSGYPYYACAKAALDQYTRCTAIDLI  199 (297)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence            2 3223355555444556677777663

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.88  E-value=4.7e-05  Score=70.50  Aligned_cols=97  Identities=15%  Similarity=0.143  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCCC-hhHHHH-hhccc------cCcc--ee---eee-ccCCHHH
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTAD-ISHMD------TNAV--VR---GFL-GQQQLED  110 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~~-~~~~~d-l~~~~------~~~~--~~---~i~-~t~d~~~  110 (270)
                      .|||+|||+ |.+|..++..|+. .|+  +|+++|.... ...... +....      ....  ..   .+. .++|+++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEI   78 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHH
Confidence            479999998 9999999999988 488  9999993221 111222 11110      0000  10   111 3568888


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEE
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL  161 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv  161 (270)
                      ++++||+||++.....                ..++++.+..+. |+.+|+.
T Consensus        79 a~~~aD~Vilav~~~~----------------~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           79 AISGADVVILTVPAFA----------------HEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHTTCSEEEECSCGGG----------------HHHHHHHHTTTCCTTCEEEE
T ss_pred             HhCCCCEEEEeCchHH----------------HHHHHHHHHhhCCCCcEEEE
Confidence            8999999999973220                245666666554 4555543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.87  E-value=5.5e-05  Score=65.44  Aligned_cols=151  Identities=13%  Similarity=0.096  Sum_probs=88.1

Q ss_pred             CCCCeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcc-ee-eeeccCCHHHHh------
Q 024248           44 SPGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAV-VR-GFLGQQQLEDAL------  112 (270)
Q Consensus        44 ~~~mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~-~~-~i~~t~d~~~al------  112 (270)
                      .+.++|.|+||+  |.+|..++..|+++|.  +|+++|++... ....++........ +. .+....++++.+      
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            445689999998  9999999999999998  99999987431 11222221100000 00 011111222222      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--C-Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          113 -TGMDIVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~-----~--g-~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                       ...|++|.+||....     +  . .+   ....+..|+.....+++.+.... +.+.|+++|.....           
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~-----------  158 (271)
T 3ek2_A           90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE-----------  158 (271)
T ss_dssp             CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------
T ss_pred             cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccc-----------
Confidence             367999999986532     0  1 11   23356677777777777776543 24566666643221           


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                       .+.|..-.++.++.....+-+.++..++
T Consensus       159 -~~~~~~~~Y~asKaa~~~~~~~la~e~~  186 (271)
T 3ek2_A          159 -RAIPNYNTMGLAKAALEASVRYLAVSLG  186 (271)
T ss_dssp             -SBCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence             1244444566665555567777888774

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.87  E-value=6.5e-05  Score=59.27  Aligned_cols=95  Identities=12%  Similarity=0.120  Sum_probs=59.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeec-cCC---HHH-HhCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LED-ALTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~-t~d---~~~-al~~ADvVIi  120 (270)
                      +.+|+|+|+ |.+|..++..|...|+  +|+++|.++...  ..+..... .   .+.+ .++   +++ .+.+||+||+
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~~--~~~~~~g~-~---~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTRV--DELRERGV-R---AVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHHH--HHHHHTTC-E---EEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHHH--HHHHHcCC-C---EEECCCCCHHHHHhcCcccCCEEEE
Confidence            458999998 9999999999999999  999999985422  22222111 1   1111 112   222 2578999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      +.+..           ..|.    .++..+++.+|+..++.-.+
T Consensus        78 ~~~~~-----------~~n~----~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           78 TIPNG-----------YEAG----EIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             CCSCH-----------HHHH----HHHHHHHHHCSSSEEEEEES
T ss_pred             ECCCh-----------HHHH----HHHHHHHHHCCCCeEEEEEC
Confidence            86321           2332    24556677788876665443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.87  E-value=9e-05  Score=70.78  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc-CcceeeeeccCCHHHHhC---CCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALT---GMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~-~~~~~~i~~t~d~~~al~---~ADvVIi~  121 (270)
                      .|||+|||. |.+|.+++..|+..|+  +|+++|++++..  .++..... ...   +..+.+++++++   ++|+||++
T Consensus         4 ~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~g~~g~~---i~~~~s~~e~v~~l~~aDvVil~   75 (484)
T 4gwg_A            4 QADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKGTK---VVGAQSLKEMVSKLKKPRRIILL   75 (484)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTTSS---CEECSSHHHHHHTBCSSCEEEEC
T ss_pred             CCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhcccCCCc---eeccCCHHHHHhhccCCCEEEEe
Confidence            469999997 9999999999999999  999999986432  22222100 111   122456767665   69999998


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCC
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv  166 (270)
                      ...+               +.+.++++.+.... |+.+||..||..
T Consensus        76 Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           76 VKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             SCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            7322               12234455665554 567777777654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.87  E-value=0.00016  Score=63.45  Aligned_cols=156  Identities=19%  Similarity=0.153  Sum_probs=87.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--------------hhHH----HHhhccccCcceeeee-ccC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------------PGVT----ADISHMDTNAVVRGFL-GQQ  106 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--------------~~~~----~dl~~~~~~~~~~~i~-~t~  106 (270)
                      .+.+.|+||+|.+|..++..|++.|.  .|+++|++..              ....    ..+...  ...+..+. ..+
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   86 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDVR   86 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCCC
Confidence            34799999999999999999999998  9999998721              1111    112111  11111110 111


Q ss_pred             C---HHHH-------hCCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHH----HHhHhCCCCEEEEecCC
Q 024248          107 Q---LEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNP  165 (270)
Q Consensus       107 d---~~~a-------l~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~sNP  165 (270)
                      |   ++++       +...|++|.+||......    .+   ....+..|+.....+++    .+.+....+.|+++|..
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV  166 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence            2   2222       237899999998754322    11   22345667655554444    44444445677777643


Q ss_pred             CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       166 v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ...            .+.|..-.++.++..-..+-+.+|.+++  +..|++.++
T Consensus       167 ~~~------------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~vn~v  206 (286)
T 3uve_A          167 GGL------------KAYPHTGHYVAAKHGVVGLMRAFGVELG--QHMIRVNSV  206 (286)
T ss_dssp             GGT------------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hhc------------cCCCCccHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            321            1233333455555555567777888874  334544433

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.87  E-value=0.00015  Score=63.55  Aligned_cols=147  Identities=16%  Similarity=0.158  Sum_probs=82.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-----------Chh----HHHHhhccccCcceeee-eccCC--
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----------TPG----VTADISHMDTNAVVRGF-LGQQQ--  107 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-----------~~~----~~~dl~~~~~~~~~~~i-~~t~d--  107 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++.           ...    ...++...  ......+ ..-+|  
T Consensus        15 gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           15 GRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLDVRDDA   90 (280)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTTCHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHH
Confidence            34799999999999999999999998  999999842           111    11122211  1111111 01112  


Q ss_pred             -HHHH-------hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHH----HHHhHhCCCCEEEEecCCCCCc
Q 024248          108 -LEDA-------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNPVNST  169 (270)
Q Consensus       108 -~~~a-------l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~sNPv~~~  169 (270)
                       +++.       +...|++|.+||......   .+   ....+..|+.....++    +.+.+....+.||++|..... 
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-  169 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGL-  169 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGT-
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhc-
Confidence             2222       347899999998753211   11   2234556765554444    444544445677777643321 


Q ss_pred             HHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          170 VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       170 ~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                                 .+.|..-.++.++..-..+-+.+|.+++
T Consensus       170 -----------~~~~~~~~Y~asKaa~~~~~~~la~e~~  197 (280)
T 3pgx_A          170 -----------KATPGNGHYSASKHGLTALTNTLAIELG  197 (280)
T ss_dssp             -----------SCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -----------cCCCCchhHHHHHHHHHHHHHHHHHHhh
Confidence                       1233333455555555567777888764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.87  E-value=5.6e-05  Score=60.37  Aligned_cols=100  Identities=11%  Similarity=0.023  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-Chh-HHHHhhccccCcceeeeec-cC---CHHHH-hCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG-VTADISHMDTNAVVRGFLG-QQ---QLEDA-LTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-~~~-~~~dl~~~~~~~~~~~i~~-t~---d~~~a-l~~ADvV  118 (270)
                      ++||.|+|+ |.+|..++..|...|+  +|+++|.+. ... ...+.....    +..+.+ .+   .++++ +++||+|
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~~----~~~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcCC----CeEEEcCCCCHHHHHHcChhhCCEE
Confidence            458999998 9999999999999998  999999974 211 111111110    111111 11   24444 8899999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEE-ecCCCC
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVN  167 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~sNPv~  167 (270)
                      |++.+.         +  ..|.    .++..+++.+|+..++. +.+|..
T Consensus        76 i~~~~~---------d--~~n~----~~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           76 LALSDN---------D--ADNA----FVVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSC---------H--HHHH----HHHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEecCC---------h--HHHH----HHHHHHHHHCCCCEEEEEECCHHH
Confidence            998631         1  2343    34455566667765554 456655

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.86  E-value=3.2e-05  Score=67.49  Aligned_cols=117  Identities=17%  Similarity=0.140  Sum_probs=70.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHHh-------CCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDAL-------TGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~al-------~~A  115 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|+++....  ..++. ... ..+. .+....++++++       ...
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~~~-~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-AEA-IAVVADVSDPKAVEAVFAEALEEFGRL   81 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-SSE-EEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-Cce-EEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999999999998  9999999753211  11111 000 0000 011111222222       357


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCC
Q 024248          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPV  166 (270)
Q Consensus       116 DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv  166 (270)
                      |++|.+||......   .+   ....+..|+.....+++.+.+... .+.|+++|...
T Consensus        82 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  139 (263)
T 2a4k_A           82 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA  139 (263)
T ss_dssp             CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            99999998653211   11   234567888888888887766542 46777776543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.86  E-value=0.00025  Score=55.44  Aligned_cols=69  Identities=14%  Similarity=0.167  Sum_probs=45.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC---HHHH-hCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d---~~~a-l~~ADvVIi~a  122 (270)
                      ++|+|+|+ |.+|..++..|...|+  +|+++|+++..  ...+.+... ..+.  ...++   ++++ +.++|+||++.
T Consensus         7 ~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~~-~~~~--gd~~~~~~l~~~~~~~~d~vi~~~   78 (141)
T 3llv_A            7 YEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEGF-DAVI--ADPTDESFYRSLDLEGVSAVLITG   78 (141)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTTC-EEEE--CCTTCHHHHHHSCCTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCCC-cEEE--CCCCCHHHHHhCCcccCCEEEEec
Confidence            47999998 9999999999999999  99999997532  222222111 0010  01122   2222 46899999986


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      +
T Consensus        79 ~   79 (141)
T 3llv_A           79 S   79 (141)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.85  E-value=5.5e-05  Score=67.45  Aligned_cols=76  Identities=16%  Similarity=0.293  Sum_probs=55.9

Q ss_pred             CeEEEEc-CCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIG-a~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      +||+||| + |.+|..++..|+..|+  +|+++|+++..                      +.++++++||+||+++...
T Consensus        22 ~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~~----------------------~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A           22 HKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVPIN   76 (298)
T ss_dssp             CCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSCGG
T ss_pred             CEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCccc----------------------CHHHHhcCCCEEEEeCCHH
Confidence            4899999 6 9999999999999998  99999986420                      3457789999999997321


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s  163 (270)
                                      .+.++++.+..+. |+++|+.++
T Consensus        77 ----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           77 ----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             ----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             ----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence                            1345556666544 566665554

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.85  E-value=5.7e-05  Score=66.07  Aligned_cols=146  Identities=17%  Similarity=0.101  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~A  115 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|+++....  ..++....   .+. .+....+++++       +...
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~Dv~d~~~v~~~~~~~~~~~g~i   83 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAV---FILCDVTQEDDVKTLVSETIRRFGRL   83 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEE---EEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCCe---EEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            45799999999999999999999998  9999999753211  11111100   000 01001112222       3378


Q ss_pred             CEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          116 DIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       116 DvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      |++|.+||.....+    .+   ....+..|+.....+++.+..+.  ..+.||++|....       .    . +.|..
T Consensus        84 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~-------~----~-~~~~~  151 (270)
T 1yde_A           84 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVG-------A----I-GQAQA  151 (270)
T ss_dssp             CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHH-------H----H-CCTTC
T ss_pred             CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccc-------c----C-CCCCC
Confidence            99999998643211    11   23355677766666555554321  1466776663211       0    0 23333


Q ss_pred             CeeeechhhHHHHHHHHHHHhC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      -.++.++.....+-+.++..++
T Consensus       152 ~~Y~asKaa~~~~~~~la~e~~  173 (270)
T 1yde_A          152 VPYVATKGAVTAMTKALALDES  173 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cccHHHHHHHHHHHHHHHHHhh
Confidence            3455555555566777777753

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.85  E-value=0.00013  Score=64.04  Aligned_cols=148  Identities=11%  Similarity=0.078  Sum_probs=87.4

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCc-cee-eeeccCCHHHHh-------CC
Q 024248           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNA-VVR-GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        47 mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~-~~~-~i~~t~d~~~al-------~~  114 (270)
                      ++|.|+||+  |.+|..++..|+..|.  +|+++|++.. .....++....... .+. .+....++++++       ..
T Consensus        22 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           22 KRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            479999998  8999999999999998  9999998753 11122232110000 000 011111222222       37


Q ss_pred             CCEEEEcCCCCCC-----C--CCc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          115 MDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       115 ADvVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .|++|++||....     +  ..+   ....+..|+.....+++.+.+..  ..+.||++|.....            .+
T Consensus       100 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~------------~~  167 (285)
T 2p91_A          100 LDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAE------------KV  167 (285)
T ss_dssp             CCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGT------------SB
T ss_pred             CCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhc------------cC
Confidence            8999999986532     1  111   23456788888888888876653  24677777642221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .|..-.++.++.....+-+.++..++
T Consensus       168 ~~~~~~Y~~sK~a~~~~~~~la~e~~  193 (285)
T 2p91_A          168 VPHYNVMGIAKAALESTVRYLAYDIA  193 (285)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            33334566666555667777777763

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.85  E-value=7.2e-05  Score=67.08  Aligned_cols=147  Identities=16%  Similarity=0.161  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC----------hhHH----HHhhccccCcceeeee-ccCC---
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PGVT----ADISHMDTNAVVRGFL-GQQQ---  107 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~----------~~~~----~dl~~~~~~~~~~~i~-~t~d---  107 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++..          ....    ..+...  ...+..+. .-+|   
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLAS  121 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            34789999999999999999999999  9999998621          1111    111111  11111110 1112   


Q ss_pred             HHHH-------hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcH
Q 024248          108 LEDA-------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTV  170 (270)
Q Consensus       108 ~~~a-------l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~  170 (270)
                      +++.       +...|++|..||......   .+   ....+..|+.....+++.    +.+....+.||++|.....  
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~--  199 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGL--  199 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGS--
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhc--
Confidence            2222       347899999998753211   12   223456676655554444    4443445677777643321  


Q ss_pred             HHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          171 PIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       171 ~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                                .+.|..-.++.++.....+-+.+|..++
T Consensus       200 ----------~~~~~~~~Y~asKaa~~~l~~~la~e~~  227 (317)
T 3oec_A          200 ----------RGAPGQSHYAASKHGVQGLMLSLANEVG  227 (317)
T ss_dssp             ----------SCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             ----------CCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence                      1233333455555555567788888874

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.84  E-value=4.4e-05  Score=67.16  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al-------  112 (270)
                      .++|.|+||+|.+|..++..|+++|.  +|++++++....  ...++....  ..+..+. .-+|   +++++       
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999998  999998764321  122232211  1111110 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHH----HHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|+||.+||.....   ..+   ..+.+..|+.....+    .+.+.+. ..+.|+++|....       .    . +
T Consensus       120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~-------~----~-~  186 (285)
T 2c07_A          120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSIVG-------L----T-G  186 (285)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCTHH-------H----H-C
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEECChhh-------c----c-C
Confidence            4789999999875321   111   234456676664444    4444333 2356666664321       0    0 2


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .|..-.++.++.....+-+.+++.+.
T Consensus       187 ~~~~~~Y~asK~a~~~~~~~la~e~~  212 (285)
T 2c07_A          187 NVGQANYSSSKAGVIGFTKSLAKELA  212 (285)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            33334456665555567777777763

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.84  E-value=0.00013  Score=64.32  Aligned_cols=146  Identities=16%  Similarity=0.140  Sum_probs=83.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-h--hHHHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~--~~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      +++.|+||+|.+|..++..|++.|.  +|++.|++.. .  ....++.... ...+..    +....+++++       +
T Consensus        26 k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            4799999999999999999999998  9999998542 1  1122222210 111111    1111112222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+    .+. ..+.|+++|.....            .+
T Consensus       103 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~------------~~  169 (281)
T 3v2h_A          103 GGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK-GWGRIINIASAHGL------------VA  169 (281)
T ss_dssp             SSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCcccc------------cC
Confidence            37899999998753221   11   2234566766655555554    443 34566666643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .|..-.++.++.....+-+.+|..++
T Consensus       170 ~~~~~~Y~asKaa~~~l~~~la~e~~  195 (281)
T 3v2h_A          170 SPFKSAYVAAKHGIMGLTKTVALEVA  195 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            33333456665555667788888874

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.84  E-value=7.5e-05  Score=64.87  Aligned_cols=156  Identities=17%  Similarity=0.160  Sum_probs=87.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-eCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------  112 (270)
                      +++.|+||+|.+|.+++..|+++|.  +|++. +++....  ...++....  ..+..    +....++++++       
T Consensus         5 k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            5 KCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999998  88886 6654221  122232211  11111    11111222222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+...   ...+.|+++|.....            .+.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~------------~~~  148 (258)
T 3oid_A           81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSI------------RYL  148 (258)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGT------------SBC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhC------------CCC
Confidence            35699999998643211   11   1234567776665555555332   234667766643221            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +..-.++.++.....+-+.+|..++  +..|++.++-
T Consensus       149 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  183 (258)
T 3oid_A          149 ENYTTVGVSKAALEALTRYLAVELS--PKQIIVNAVS  183 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            3334456666555667888888874  4455554443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.84  E-value=0.0003  Score=62.22  Aligned_cols=147  Identities=16%  Similarity=0.092  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHH-hhccccCcceeeee-ccCC---HH-------H
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTAD-ISHMDTNAVVRGFL-GQQQ---LE-------D  110 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~d-l~~~~~~~~~~~i~-~t~d---~~-------~  110 (270)
                      .+++.|+||+|.+|.+++..|++.|.  +|++.|++....   ...+ +....  ..+..+. .-+|   ++       +
T Consensus        49 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           49 DRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999998  999999863211   1111 11111  1111000 0112   21       2


Q ss_pred             HhCCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          111 ALTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .+...|++|..||.....+    .+   ....+..|+.....+++.+..... .+.||++|.....            .+
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~------------~~  192 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAY------------QP  192 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGT------------SC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhc------------cC
Confidence            2347899999998643211    11   234577888888888888876543 4677777643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .+..-.++.++.....+-+.+|.+++
T Consensus       193 ~~~~~~Y~asKaa~~~l~~~la~e~~  218 (294)
T 3r3s_A          193 SPHLLDYAATKAAILNYSRGLAKQVA  218 (294)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            33333456666555667788888873

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.83  E-value=0.00017  Score=63.98  Aligned_cols=156  Identities=18%  Similarity=0.170  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC----------hh----HHHHhhccccCcceeeee-ccCC---
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PG----VTADISHMDTNAVVRGFL-GQQQ---  107 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~----------~~----~~~dl~~~~~~~~~~~i~-~t~d---  107 (270)
                      .+.+.|+||+|.+|..++..|++.|.  .|+++|+++.          ..    ...++....  ..+..+. ..+|   
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDA  103 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHH
Confidence            34799999999999999999999999  9999998731          11    111222111  1111110 1112   


Q ss_pred             HHHH-------hCCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCc
Q 024248          108 LEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNST  169 (270)
Q Consensus       108 ~~~a-------l~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~  169 (270)
                      ++++       +...|++|..||......    .+   ....+..|+.....+++.    +.+....+.|+++|..... 
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~-  182 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGL-  182 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGT-
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhc-
Confidence            2222       347899999998653221    12   233566776655555554    4433345677777643321 


Q ss_pred             HHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          170 VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       170 ~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                                 .+.|..-.++.++..-..+-+.+|.+++  +..|++.++
T Consensus       183 -----------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  219 (299)
T 3t7c_A          183 -----------RGAENIGNYIASKHGLHGLMRTMALELG--PRNIRVNIV  219 (299)
T ss_dssp             -----------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -----------cCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence                       1233333455555555567778888874  334544433

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.83  E-value=0.00011  Score=63.59  Aligned_cols=157  Identities=13%  Similarity=0.116  Sum_probs=86.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccC-cceeee-eccCC---HHHH-------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTN-AVVRGF-LGQQQ---LEDA-------  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~-~~~~~i-~~t~d---~~~a-------  111 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++....  ...++...... ..+..+ ..-+|   .+++       
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            34799999999999999999999998  999999975321  12222211000 111100 01112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCCC--Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          112 LTGMDIVIIPAGVPRKPG--MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g--~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      +...|++|.+||......  .+   ....+..|+.....+++.+    ++. ..+.|+++|.....    .        +
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~----~--------~  151 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVASRAAK----Y--------G  151 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC------------------
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEccHHhc----C--------C
Confidence            347899999998753221  11   1234566665554444444    433 35667777654331    0        1


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .++.-.++.++.....+-+.++..++  +..|++.++
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  186 (250)
T 3nyw_A          152 FADGGIYGSTKFALLGLAESLYRELA--PLGIRVTTL  186 (250)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            23334466666555667788888874  334544433

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.82  E-value=0.0001  Score=66.99  Aligned_cols=66  Identities=21%  Similarity=0.256  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.|||+|||+ |.+|.+++..|...|+  +|+++|++.....  +.....   .+.   .+ ++++++++||+||++.
T Consensus        15 ~~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~--~~a~~~---G~~---~~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           15 QGKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATV--AKAEAH---GLK---VA-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             HTSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHH--HHHHHT---TCE---EE-CHHHHHHTCSEEEECS
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHH--HHHHHC---CCE---Ec-cHHHHHhcCCEEEEeC
Confidence            3579999997 9999999999999998  8999998754311  111110   111   12 6778899999999986

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.82  E-value=0.00018  Score=62.49  Aligned_cols=156  Identities=16%  Similarity=0.083  Sum_probs=85.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l  112 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|++.|++....  ...++....  ..+..    +....++++.       +
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  999999975321  122332211  11111    1111112222       2


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ...|++|.+||.....+    .+   ....+..|+.....+++.+....  ..+.||++|.....            .+.
T Consensus        87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~  154 (264)
T 3ucx_A           87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVR------------HSQ  154 (264)
T ss_dssp             SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGG------------CCC
T ss_pred             CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhc------------cCC
Confidence            37899999997642211    11   22345667665555554433221  13667766643221            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      |..-.++.++..-..+-+.+|..++  +..|++.++
T Consensus       155 ~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  188 (264)
T 3ucx_A          155 AKYGAYKMAKSALLAMSQTLATELG--EKGIRVNSV  188 (264)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            3333455555445567777777764  234444333

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=97.82  E-value=3.2e-05  Score=66.42  Aligned_cols=144  Identities=15%  Similarity=0.174  Sum_probs=87.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCCC-hhH-----HHHhhccccCcceeeeeccCCHHHHh-----CCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGV-----TADISHMDTNAVVRGFLGQQQLEDAL-----TGM  115 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~~-~~~-----~~dl~~~~~~~~~~~i~~t~d~~~al-----~~A  115 (270)
                      ++.|+||+|.+|..++..|++ .+.  .|++.|+++. ...     ..|+.+.            .++++.+     ...
T Consensus         6 ~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~Dv~~~------------~~v~~~~~~~~~~~i   71 (244)
T 4e4y_A            6 NYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKADLTKQ------------QDITNVLDIIKNVSF   71 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEECCTTCH------------HHHHHHHHHTTTCCE
T ss_pred             eEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEecCcCCH------------HHHHHHHHHHHhCCC
Confidence            689999999999999999998 677  8999998764 111     1122221            1122222     278


Q ss_pred             CEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          116 DIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       116 DvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      |++|..||.....   ..+   ....+..|+.....+++.+...-. .+.|+++|.....            .+.|..-.
T Consensus        72 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~~~~~~~  139 (244)
T 4e4y_A           72 DGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCF------------IAKPNSFA  139 (244)
T ss_dssp             EEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGT------------CCCTTBHH
T ss_pred             CEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHc------------cCCCCCch
Confidence            9999999875321   112   234567888888888887765432 3466666543221            12333334


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ++.++..-..+-+.++.+++  +..|++.++
T Consensus       140 Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  168 (244)
T 4e4y_A          140 YTLSKGAIAQMTKSLALDLA--KYQIRVNTV  168 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence            55665555667778888764  334544333

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.82  E-value=7.9e-05  Score=66.02  Aligned_cols=182  Identities=15%  Similarity=0.098  Sum_probs=93.7

Q ss_pred             hcCCCccccccccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhcccc
Q 024248           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDT   95 (270)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~   95 (270)
                      |-|+|++-.-.+--+|.+|..|..    .+.+.|+||++-+|..+|..|++.|.  .|++.|++++.  ..+.++... .
T Consensus         5 ~~~~s~~~~~~~n~~~~~Ms~rL~----gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~g~~-~   77 (273)
T 4fgs_A            5 HHHSSGVDLGTENLYFQSMTQRLN----AKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEIGGG-A   77 (273)
T ss_dssp             --------------------CTTT----TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTT-C
T ss_pred             cccccCCCccccccchhhhcchhC----CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCC-e
Confidence            678888887777777777776542    23578889999999999999999999  99999997532  122233211 0


Q ss_pred             Cccee-eeeccCC-------HHHHhCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEE
Q 024248           96 NAVVR-GFLGQQQ-------LEDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVN  160 (270)
Q Consensus        96 ~~~~~-~i~~t~d-------~~~al~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~vi  160 (270)
                       ..+. .+....+       ..+.+-..|++|..||......   .+   ....+..|+.....+++.+..+- ..+.||
T Consensus        78 -~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~II  156 (273)
T 4fgs_A           78 -VGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVV  156 (273)
T ss_dssp             -EEEECCTTCHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEE
T ss_pred             -EEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEE
Confidence             0000 0100111       1233457899999998653211   11   33456778777766666655433 235666


Q ss_pred             EecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       161 v~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      +++.-...            .+.|..-.|+.++-.-..|-+.+|.+++  +..|++..+-.
T Consensus       157 nisS~~~~------------~~~~~~~~Y~asKaav~~ltr~lA~Ela--~~gIrVN~V~P  203 (273)
T 4fgs_A          157 LTGSTAGS------------TGTPAFSVYAASKAALRSFARNWILDLK--DRGIRINTLSP  203 (273)
T ss_dssp             EECCGGGG------------SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSCEEEEEEEE
T ss_pred             EEeehhhc------------cCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEee
Confidence            66532221            1344333455554444557788888875  56676666654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.82  E-value=3.4e-05  Score=66.97  Aligned_cols=148  Identities=11%  Similarity=0.111  Sum_probs=86.5

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCcc-ee-eeeccCCHHHHh-------C
Q 024248           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV-VR-GFLGQQQLEDAL-------T  113 (270)
Q Consensus        46 ~mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~-~~-~i~~t~d~~~al-------~  113 (270)
                      .+++.|+||+  |.+|..++..|+++|.  +|+++|++.. .....++........ +. .+....++++++       .
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3479999998  8999999999999998  9999999753 111222322100000 00 011111222333       3


Q ss_pred             CCCEEEEcCCCCCC-----C--CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ..|++|++||....     +  ..+   ....+..|+.....+++.+.+.. ..+.|+++|.....            .+
T Consensus        86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~  153 (261)
T 2wyu_A           86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE------------KV  153 (261)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT------------SB
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEeccccc------------CC
Confidence            78999999986531     1  111   23456788888888888776542 13567777642220            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHh
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .|..-.++.++.....+-+.++..+
T Consensus       154 ~~~~~~Y~asK~a~~~~~~~la~e~  178 (261)
T 2wyu_A          154 VPKYNVMAIAKAALEASVRYLAYEL  178 (261)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHH
Confidence            3333345666555566777788877

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.82  E-value=0.00017  Score=63.02  Aligned_cols=156  Identities=21%  Similarity=0.204  Sum_probs=88.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC-----------Chh----HHHHhhccccCcceeee-eccCC--
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----------TPG----VTADISHMDTNAVVRGF-LGQQQ--  107 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~-----------~~~----~~~dl~~~~~~~~~~~i-~~t~d--  107 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++.           ...    ...++...  ...+..+ ...+|  
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   86 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDTRDFD   86 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence            34799999999999999999999999  999999841           111    11112211  1111111 01112  


Q ss_pred             -HHH-------HhCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCc
Q 024248          108 -LED-------ALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNST  169 (270)
Q Consensus       108 -~~~-------al~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~  169 (270)
                       +++       .+...|++|.+||......   .+   ....+..|+...    +.+++.+.+....+.||++|..... 
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~-  165 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGM-  165 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT-
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhC-
Confidence             222       2346899999998754321   11   123456666544    4444555555445677777643321 


Q ss_pred             HHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          170 VPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       170 ~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                                 .+.|..-.++.++.....+-+.+|.+++  +..|++.++
T Consensus       166 -----------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  202 (277)
T 3tsc_A          166 -----------KMQPFMIHYTASKHAVTGLARAFAAELG--KHSIRVNSV  202 (277)
T ss_dssp             -----------SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -----------CCCCCchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence                       1233333455665555667788888874  334544333

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.81  E-value=0.00016  Score=63.26  Aligned_cols=156  Identities=21%  Similarity=0.234  Sum_probs=86.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-h--hHHHHhhccccCcc-ee-eeeccCCHHHH-------hCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTNAV-VR-GFLGQQQLEDA-------LTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~--~~~~dl~~~~~~~~-~~-~i~~t~d~~~a-------l~~  114 (270)
                      +.+.|+||+|.+|..++..|++.|.  +|++.|+... .  ....++........ +. .+....+++++       +..
T Consensus        29 k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~  106 (269)
T 4dmm_A           29 RIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGR  106 (269)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999998  9999998542 1  11122222111000 00 01111122222       237


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      .|++|..||......   .+   ....+..|+.....+++.+    .+. ..+.||++|.-.       ..    . +.|
T Consensus       107 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~-------~~----~-~~~  173 (269)
T 4dmm_A          107 LDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ-RSGRIINIASVV-------GE----M-GNP  173 (269)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCHH-------HH----H-CCT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchh-------hc----C-CCC
Confidence            899999998754221   11   2234566766555555544    433 346677666321       11    1 344


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ..-.++.++..-..+-+.+|..++  +..|++.++
T Consensus       174 ~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  206 (269)
T 4dmm_A          174 GQANYSAAKAGVIGLTKTVAKELA--SRGITVNAV  206 (269)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            444566666555667788888874  334544333

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.79  E-value=9.2e-05  Score=64.03  Aligned_cols=147  Identities=10%  Similarity=0.058  Sum_probs=82.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh-------C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL-------T  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al-------~  113 (270)
                      +++.|+||+|.+|..++..|+++|.  +|++++++....  ...++... ....+..    +....++++++       .
T Consensus         8 k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            8 RHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKD-VEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGG-GGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3699999999999999999999998  999998765321  11122111 0111111    11111222333       3


Q ss_pred             CCCEEEEcCCC--CCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCC-CCCcHHHHHHHHHHh
Q 024248          114 GMDIVIIPAGV--PRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNP-VNSTVPIAAEVFKKV  180 (270)
Q Consensus       114 ~ADvVIi~ag~--~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~  180 (270)
                      ..|++|.+||.  .....   .+   ....+..|+.....+++.+    ++. ..+.|+++|.. ..           ..
T Consensus        85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~~~~-----------~~  152 (264)
T 3i4f_A           85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQGAD-----------SA  152 (264)
T ss_dssp             CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTTGG-----------GC
T ss_pred             CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeechhc-----------cc
Confidence            88999999983  21111   11   1234567766655555554    443 34566666533 21           11


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .+++..-.++.++.....+-+.++..+.
T Consensus       153 ~~~~~~~~Y~asKaa~~~~~~~la~e~~  180 (264)
T 3i4f_A          153 PGWIYRSAFAAAKVGLVSLTKTVAYEEA  180 (264)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence            2344444566665555567777887763

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.78  E-value=0.00011  Score=64.29  Aligned_cols=148  Identities=13%  Similarity=0.090  Sum_probs=87.2

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCcc-ee-eeeccCCHHHHh-------CC
Q 024248           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV-VR-GFLGQQQLEDAL-------TG  114 (270)
Q Consensus        47 mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~-~~-~i~~t~d~~~al-------~~  114 (270)
                      +++.|+||+  |.+|..++..|+.+|.  +|+++|++.. .....++........ +. .+....++++++       ..
T Consensus         7 k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            7 KKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            479999998  8999999999999998  9999999764 112222322100000 00 011111122222       36


Q ss_pred             CCEEEEcCCCCCC-----C--CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          115 MDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       115 ADvVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .|++|.+||....     +  ..+   ....+..|+.....+++.+.+.- ..+.||++|.....            .+.
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~~  152 (275)
T 2pd4_A           85 LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGST------------KYM  152 (275)
T ss_dssp             EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT------------SBC
T ss_pred             CCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhc------------CCC
Confidence            7999999987532     1  111   23456788888888888877543 23567777642221            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      |..-.++.++.....+-+.++..++
T Consensus       153 ~~~~~Y~asK~a~~~~~~~la~e~~  177 (275)
T 2pd4_A          153 AHYNVMGLAKAALESAVRYLAVDLG  177 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHhh
Confidence            3333456665555567777888773

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.78  E-value=5.7e-05  Score=65.05  Aligned_cols=154  Identities=14%  Similarity=0.112  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHH-------h
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l  112 (270)
                      .++|.|+||+|++|..++..|+++|.  +|+++|++....  ...++.... ...+..+. .-+|   ++++       +
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   90 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999998  999999965321  122222110 01111110 0112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh----CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|+||++||......   .+   ....+..|+.....+++.+.+.    ...+.|+++|........ .    ....+
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-~----~~~~~  165 (265)
T 1h5q_A           91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIIN-Q----SSLNG  165 (265)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-E----EETTE
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccc-c----ccccc
Confidence            35899999998753211   11   2234566776665555555432    333666666642210000 0    00000


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHh
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      .++.-.++.++.....+-+.+++.+
T Consensus       166 ~~~~~~Y~~sK~a~~~~~~~la~e~  190 (265)
T 1h5q_A          166 SLTQVFYNSSKAACSNLVKGLAAEW  190 (265)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHHH
Confidence            0012234555555556777777776

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.78  E-value=7.6e-05  Score=63.12  Aligned_cols=99  Identities=17%  Similarity=0.161  Sum_probs=59.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCC---HHHH-hCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d---~~~a-l~~ADvVIi~a  122 (270)
                      |||+|+|+ |.+|+.++..|...|+  +|+++|.++...  .++........+.  ...++   ++++ +++||+||++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~~--~~l~~~~~~~~i~--gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDRELC--EEFAKKLKATIIH--GDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHHH--HHHHHHSSSEEEE--SCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHHHcCCeEEE--cCCCCHHHHHhcCcccCCEEEEec
Confidence            79999998 9999999999999998  999999975422  2222110000010  01112   3343 78999999986


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVN  167 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~  167 (270)
                      +..           ..|.    .++..+++..|...++.-. +|.+
T Consensus        74 ~~d-----------~~n~----~~~~~a~~~~~~~~iia~~~~~~~  104 (218)
T 3l4b_C           74 PRD-----------EVNL----FIAQLVMKDFGVKRVVSLVNDPGN  104 (218)
T ss_dssp             SCH-----------HHHH----HHHHHHHHTSCCCEEEECCCSGGG
T ss_pred             CCc-----------HHHH----HHHHHHHHHcCCCeEEEEEeCcch
Confidence            321           2232    2444445556766555444 5544

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.78  E-value=0.00013  Score=63.66  Aligned_cols=152  Identities=14%  Similarity=0.089  Sum_probs=87.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC----------hh----HHHHhhccccCcceeeee-ccCC---
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PG----VTADISHMDTNAVVRGFL-GQQQ---  107 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~----------~~----~~~dl~~~~~~~~~~~i~-~t~d---  107 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|++..          ..    ...++...  ...+..+. .-+|   
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHHH
Confidence            34799999999999999999999998  9999998721          00    11122211  11111110 1112   


Q ss_pred             HHHHh-------CCCCEEEEcCCCCCCCC-C---chhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHH
Q 024248          108 LEDAL-------TGMDIVIIPAGVPRKPG-M---TRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAE  175 (270)
Q Consensus       108 ~~~al-------~~ADvVIi~ag~~~~~g-~---~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~  175 (270)
                      +++++       ...|++|.+||...... .   +....+..|+.....+++.+.... ..+.|+++|....    ... 
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~----~~~-  160 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAG----LIA-  160 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHH----HHH-
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchh----ccc-
Confidence            22222       37899999998753221 1   233567889888888888887764 3567777664222    111 


Q ss_pred             HHHHh-CCC-----CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          176 VFKKV-GTY-----DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       176 ~~~~~-sg~-----p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                        ... ...     |..-.++.++.....+-+.+|.+++
T Consensus       161 --~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~  197 (287)
T 3pxx_A          161 --AAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLA  197 (287)
T ss_dssp             --HHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             --ccccccccccCCCccchHHHHHHHHHHHHHHHHHHHh
Confidence              100 000     1111244555555567778888873

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.78  E-value=0.00025  Score=62.09  Aligned_cols=149  Identities=11%  Similarity=0.028  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------  111 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------  111 (270)
                      +.+++.|+||+|.+|..++..|++.|.  +|+++|++....  ...++.... ...+..    +....+.+++       
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999975321  122232110 011110    1111112222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      +...|++|.+||......   .+   ....+..|+.....+++.+...   ...+.|+++|....       .   .  +
T Consensus       103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~-------~---~--~  170 (277)
T 4fc7_A          103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLG-------N---R--G  170 (277)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHH-------H---H--T
T ss_pred             cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhh-------C---C--C
Confidence            347899999998643211   11   2335667777666666665332   13466777764321       0   1  2


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      .+..-.++.++..-..+-+.+|..++
T Consensus       171 ~~~~~~Y~asKaa~~~l~~~la~e~~  196 (277)
T 4fc7_A          171 QALQVHAGSAKAAVDAMTRHLAVEWG  196 (277)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333455555555567778888874

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.77  E-value=0.00019  Score=64.69  Aligned_cols=34  Identities=21%  Similarity=0.131  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEe-CCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD-~~~   82 (270)
                      +++.|+||+|.+|..++..|+..|.  +|+++| ++.
T Consensus        47 k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           47 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            4699999999999999999999998  999999 764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.77  E-value=3.7e-05  Score=66.69  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +.|||+|||+ |.+|..++..|...|+  +|.++|+++...  .++....   .   +..+++++++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~~--~~~~~~~---g---~~~~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERS--KEIAEQL---A---LPYAMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHH--HHHHHHH---T---CCBCSSHHHHHHTCSEEEECSC
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHHc---C---CEeeCCHHHHHhcCCEEEEEeC
Confidence            3579999997 9999999999998886  999999975322  2222110   0   1124577788899999999973

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.77  E-value=0.00021  Score=63.16  Aligned_cols=34  Identities=21%  Similarity=0.131  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEe-CCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD-~~~   82 (270)
                      +++.|+||+|.+|..++..|+.+|.  +|+++| ++.
T Consensus        10 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A           10 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            4799999999999999999999998  999999 764

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.77  E-value=0.00013  Score=62.60  Aligned_cols=150  Identities=14%  Similarity=0.075  Sum_probs=86.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-e--CCCChhH--HHHhhccccCcceeeeeccCCHHH-------HhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-D--VVNTPGV--TADISHMDTNAVVRGFLGQQQLED-------ALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~Lv-D--~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~-------al~~  114 (270)
                      +++.|+||+|.+|..++..|+++|.  +|+++ +  ++.....  ..++ ..   ..+   ....++++       .+..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~~---~~~---~~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-PG---TIA---LAEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-TT---EEE---CCCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-CC---Ccc---cCHHHHHHHHHHHHHHcCC
Confidence            3789999999999999999999998  99999 5  7643211  1122 10   000   01112222       2346


Q ss_pred             CCEEEEcCCCCCC---C---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          115 MDIVIIPAGVPRK---P---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       115 ADvVIi~ag~~~~---~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .|++|.+||....   .   ..+   ....+..|+.....+++.+...   ...+.|+++|.....            .+
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~------------~~  140 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGK------------KP  140 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT------------SC
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhC------------CC
Confidence            8999999986533   1   111   2235667766555555544321   234667777643321            13


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .|..-.++.++.....+-+.++.+++  +..|++.++
T Consensus       141 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  175 (244)
T 1zmo_A          141 LAYNPLYGPARAATVALVESAAKTLS--RDGILLYAI  175 (244)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            44444566666555567777888774  334544433

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.76  E-value=0.00012  Score=63.87  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=86.3

Q ss_pred             CeEEEEcC--CCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccc-cCcc-ee-eeeccCCHHHHhC--------
Q 024248           47 FKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAV-VR-GFLGQQQLEDALT--------  113 (270)
Q Consensus        47 mKI~IIGa--~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~-~~~~-~~-~i~~t~d~~~al~--------  113 (270)
                      +++.|+||  +|.+|..++..|++.|.  +|++.|++.... ..++.+.. .... +. .+....+++++++        
T Consensus         8 k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            8 KRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            47999998  89999999999999998  999999975321 11121110 0000 00 0111112222332        


Q ss_pred             --CCCEEEEcCCCCCC------C--CCc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          114 --GMDIVIIPAGVPRK------P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       114 --~ADvVIi~ag~~~~------~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                        ..|++|.+||....      +  ..+   ....+..|+.....+++.+.++- ..+.|+++|.....           
T Consensus        85 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~-----------  153 (269)
T 2h7i_A           85 GNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR-----------  153 (269)
T ss_dssp             TCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS-----------
T ss_pred             CCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcccc-----------
Confidence              78999999986531      1  111   22346778887777887776543 23566666532110           


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                        +.|..-.++.++.....+-+.++..++  +..|++.++
T Consensus       154 --~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  189 (269)
T 2h7i_A          154 --AMPAYNWMTVAKSALESVNRFVAREAG--KYGVRSNLV  189 (269)
T ss_dssp             --CCTTTHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             --ccCchHHHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence              122222344544444556677777764  334544333

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.76  E-value=0.00013  Score=64.07  Aligned_cols=155  Identities=17%  Similarity=0.120  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeee-ccCC---HH-------HHhCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LE-------DALTG  114 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~-~t~d---~~-------~al~~  114 (270)
                      .+++.|+||+|.+|..++..|+++|.  +|+++|++.....  ++.... ...+..+. .-+|   .+       +.+..
T Consensus         5 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (281)
T 3zv4_A            5 GEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSAERLR--ELEVAH-GGNAVGVVGDVRSLQDQKRAAERCLAAFGK   79 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHT-BTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHH--HHHHHc-CCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            34799999999999999999999998  9999999753211  111100 00110000 0112   11       22347


Q ss_pred             CCEEEEcCCCCCCCCC------c-----hhhhHHhhHHHHHHHHHHHhHhC--CCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          115 MDIVIIPAGVPRKPGM------T-----RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~------~-----r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      .|++|.+||.......      +     ....+..|+.....+++.+....  ..+.+|+++.-...            .
T Consensus        80 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~  147 (281)
T 3zv4_A           80 IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGF------------Y  147 (281)
T ss_dssp             CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT------------S
T ss_pred             CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhc------------c
Confidence            7999999986422110      1     12244566655554444443221  13566666533221            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.+..-.++.++..-..+-+.+|..++-.   |++..+.
T Consensus       148 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~---Irvn~v~  183 (281)
T 3zv4_A          148 PNGGGPLYTATKHAVVGLVRQMAFELAPH---VRVNGVA  183 (281)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHHHHHTTT---SEEEEEE
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhcCC---CEEEEEE
Confidence            23333345666555566788888888643   5554443

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.75  E-value=0.00028  Score=61.58  Aligned_cols=154  Identities=16%  Similarity=0.147  Sum_probs=88.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-ee-eeeccCC-------HHHHhCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQ-------LEDALTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~~-~i~~t~d-------~~~al~~ADv  117 (270)
                      ++|.|+||++-+|..++..|++.|.  .|++.|++++.  ..++........ +. .+....+       ..+.+...|+
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~--~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDi   78 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEKR--SADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDV   78 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4689999999999999999999998  99999997532  122222110000 00 0000011       1234568899


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      +|..||......   .+   ....+..|+...    +.+.+.+.+  ..+.+|+++.-...            .+.|..-
T Consensus        79 LVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~--~~G~IInisS~~~~------------~~~~~~~  144 (247)
T 3ged_A           79 LVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIK--NKGRIINIASTRAF------------QSEPDSE  144 (247)
T ss_dssp             EEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TTCEEEEECCGGGT------------SCCTTCH
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh--cCCcEEEEeecccc------------cCCCCCH
Confidence            999998754221   11   223456666554    444445543  24677777643221            1233333


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .++.++-.-..|-+.+|.+++  | .|++..+..
T Consensus       145 ~Y~asKaal~~ltk~lA~ela--~-~IrVN~I~P  175 (247)
T 3ged_A          145 AYASAKGGIVALTHALAMSLG--P-DVLVNCIAP  175 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--T-TSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHC--C-CCEEEEEec
Confidence            355554444557788899986  4 576666553

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.75  E-value=4.4e-05  Score=67.34  Aligned_cols=64  Identities=20%  Similarity=0.270  Sum_probs=48.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|||+ |.+|..++..|+..|+  +|+++|+++...  ..+....       +..+++++++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g-------~~~~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDAC--KEFQDAG-------EQVVSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHTTT-------CEECSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHcC-------CeecCCHHHHHhcCCEEEEeC
Confidence            68999997 9999999999999998  999999975422  2232211       122457778888999999986

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.74  E-value=0.0002  Score=62.30  Aligned_cols=146  Identities=11%  Similarity=0.069  Sum_probs=81.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceeeee-ccCC---HHHH-------h
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~i~-~t~d---~~~a-------l  112 (270)
                      +.+.|+||+|.+|..++..|+..|.  .|++.|++....   ...++....  ..+..+. ..+|   .+++       +
T Consensus        26 k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           26 RVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3688999999999999999999998  999999654211   111222111  1111110 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ...|++|.+||......   .+   ....+..|+.....+++.+...   ...+.|+++|....       .    . +.
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~-------~----~-~~  169 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNG-------S----R-GA  169 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHH-------H----H-CC
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhh-------c----c-CC
Confidence            37899999998653211   11   2234566766555555544321   23466776664211       1    1 23


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhC
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +..-.++.++.....+-+.++..+.
T Consensus       170 ~~~~~Y~asKaa~~~~~~~la~e~~  194 (269)
T 3gk3_A          170 FGQANYASAKAGIHGFTKTLALETA  194 (269)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhh
Confidence            4344466665555567777888874

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.74  E-value=0.00014  Score=63.63  Aligned_cols=155  Identities=12%  Similarity=0.149  Sum_probs=84.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee-eeeccCCHHHHh------CCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR-GFLGQQQLEDAL------TGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~-~i~~t~d~~~al------~~ADv  117 (270)
                      +++.|+||+|.+|..++..|+++|.  +|+++|++....  ...++... . ..+. .+....++++++      ...|+
T Consensus        31 k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~-~-~~~~~Dl~~~~~v~~~~~~~~~~~~id~  106 (281)
T 3ppi_A           31 ASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAAEKGKALADELGNR-A-EFVSTNVTSEDSVLAAIEAANQLGRLRY  106 (281)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTT-E-EEEECCTTCHHHHHHHHHHHTTSSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCc-e-EEEEcCCCCHHHHHHHHHHHHHhCCCCe
Confidence            4799999999999999999999998  999999975321  11222110 0 0000 011111122222      36799


Q ss_pred             EEEc-CCCCCCCC--------Cc---hhhhHHhhHHHHHHHHHHHhHh---------CCCCEEEEecCCCCCcHHHHHHH
Q 024248          118 VIIP-AGVPRKPG--------MT---RDDLFNINAGIVKTLCEGIAKC---------CPKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       118 VIi~-ag~~~~~g--------~~---r~~~~~~N~~i~~~i~~~i~~~---------~p~a~viv~sNPv~~~~~i~t~~  176 (270)
                      +|++ +|......        .+   ....+..|+.....+++.+...         ...+.|+++|.....        
T Consensus       107 lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~--------  178 (281)
T 3ppi_A          107 AVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY--------  178 (281)
T ss_dssp             EEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT--------
T ss_pred             EEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc--------
Confidence            9998 55432111        11   2344566665555555544322         234567776643321        


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                          .+.+..-.++.++.....+-+.++.++.-  ..|++.++
T Consensus       179 ----~~~~~~~~Y~asKaa~~~~~~~la~e~~~--~gi~v~~v  215 (281)
T 3ppi_A          179 ----EGQIGQTAYAAAKAGVIGLTIAAARDLSS--AGIRVNTI  215 (281)
T ss_dssp             ----SCCTTCHHHHHHHHHHHHHHHHHHHHHGG--GTEEEEEE
T ss_pred             ----CCCCCCcccHHHHHHHHHHHHHHHHHHhh--cCeEEEEE
Confidence                12343444566655556677788888743  34544333

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.73  E-value=0.00016  Score=65.85  Aligned_cols=64  Identities=16%  Similarity=0.235  Sum_probs=49.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....+||+|||. |.+|..+|..+...|+  +|+.+|++.....      .     .   ....++++.+++||+|++++
T Consensus       161 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~------g-----~---~~~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          161 KFSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT------N-----Y---TYYGSVVELASNSDILVVAC  223 (333)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC------C-----S---EEESCHHHHHHTCSEEEECS
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc------C-----c---eecCCHHHHHhcCCEEEEec
Confidence            345678999998 9999999999999898  9999998754211      0     0   11346888899999999987


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      .
T Consensus       224 P  224 (333)
T 3ba1_A          224 P  224 (333)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.73  E-value=0.00017  Score=61.27  Aligned_cols=114  Identities=14%  Similarity=0.146  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHH-------hC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDA-------LT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~a-------l~  113 (270)
                      +++.|+||+|.+|..++..|+++|.  +|++.+++....  ...++.... ...+..    +....+++++       +.
T Consensus         3 k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            3689999999999999999999998  999999975321  122222110 011110    1111122223       33


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh--CCCCEEEEec
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC--CPKAIVNLIS  163 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~s  163 (270)
                      ..|++|.+||......   .+   ....+..|+.....+++.+...  ...+.+++++
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~s  137 (235)
T 3l77_A           80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTT  137 (235)
T ss_dssp             SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEe
Confidence            7899999998753221   11   2234566766655555554432  1234444444

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.72  E-value=0.00044  Score=60.09  Aligned_cols=156  Identities=14%  Similarity=0.111  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-----hHHHHhhccccCcceee----eeccCCHHHHh----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHMDTNAVVRG----FLGQQQLEDAL----  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-----~~~~dl~~~~~~~~~~~----i~~t~d~~~al----  112 (270)
                      .+.+.|+||+|.+|..++..|+..|.  +|+++++....     ....++....  ..+..    +....+.++.+    
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            34799999999999999999999998  99999875321     1122232211  11111    11111222222    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 ---TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ---~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                         ...|++|.+||......   .+   ....+..|+.....+++.+...- +.+.|++++....       ..     +
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~-------~~-----~  154 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLL-------AA-----Y  154 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHH-------HH-----H
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhh-------cc-----C
Confidence               37899999998653221   11   23356688888888888776542 3456776664322       11     1


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .+..-.++.++..-..+-+.+|..++-  ..|++.++
T Consensus       155 ~~~~~~Y~asKaa~~~l~~~la~e~~~--~gi~vn~v  189 (262)
T 3ksu_A          155 TGFYSTYAGNKAPVEHYTRAASKELMK--QQISVNAI  189 (262)
T ss_dssp             HCCCCC-----CHHHHHHHHHHHHTTT--TTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHH--cCcEEEEE
Confidence            233345777665566788889998853  34444333

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.72  E-value=0.00014  Score=65.21  Aligned_cols=64  Identities=23%  Similarity=0.440  Sum_probs=50.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ||++||. |.+|+.+|..|+..|+  +|+.||+++.  ....+.....       ....++++++++||+||.+..
T Consensus         5 kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~~--~~~~l~~~Ga-------~~a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            5 QIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAGA-------SAARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTTC-------EECSSHHHHHTTCSEEEECCS
T ss_pred             EEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHcCC-------EEcCCHHHHHhcCCceeecCC
Confidence            8999997 9999999999999999  9999999743  2333433211       123578899999999999863

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.72  E-value=0.00012  Score=65.66  Aligned_cols=147  Identities=16%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC----------CCh--hHHHHhhccccCcceeee-eccCC---HH
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV----------NTP--GVTADISHMDTNAVVRGF-LGQQQ---LE  109 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~----------~~~--~~~~dl~~~~~~~~~~~i-~~t~d---~~  109 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++          ...  ....++....  ..+..+ ...+|   ++
T Consensus        27 gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~  102 (322)
T 3qlj_A           27 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWDQAA  102 (322)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHH
Confidence            34689999999999999999999998  99999986          221  1122232211  111110 01112   22


Q ss_pred             HHh-------CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC---------CCCEEEEecCCCC
Q 024248          110 DAL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC---------PKAIVNLISNPVN  167 (270)
Q Consensus       110 ~al-------~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~---------p~a~viv~sNPv~  167 (270)
                      +.+       ...|++|.+||......   .+   ....+..|+.....+++.+..+.         ..+.||++|....
T Consensus       103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~  182 (322)
T 3qlj_A          103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG  182 (322)
T ss_dssp             HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHH
Confidence            222       37899999998754221   11   23356777766555555443221         1257777663211


Q ss_pred             CcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       168 ~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                             .   .  +.+..-.++.++..-..+-+.+|..++
T Consensus       183 -------~---~--~~~~~~~Y~asKaal~~l~~~la~e~~  211 (322)
T 3qlj_A          183 -------L---Q--GSVGQGNYSAAKAGIATLTLVGAAEMG  211 (322)
T ss_dssp             -------H---H--CBTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -------c---c--CCCCCccHHHHHHHHHHHHHHHHHHhc
Confidence                   1   1  233333456665555567778888864

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.72  E-value=5e-05  Score=65.68  Aligned_cols=154  Identities=14%  Similarity=0.091  Sum_probs=84.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHH------hCCCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDA------LTGMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~a------l~~ADvVI  119 (270)
                      +.+.|+||+|.+|..++..|+++|.  +|+++|++... ...++... . ..+. .+....+.+++      +...|++|
T Consensus        10 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~-~~~~~~~~-~-~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A           10 AVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRGED-VVADLGDR-A-RFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCHH-HHHHTCTT-E-EEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCchHH-HHHhcCCc-e-EEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            4699999999999999999999998  99999985421 11111100 0 0000 01111112222      34899999


Q ss_pred             EcCCCCCC---------CC-CchhhhHHhhHHHHHHHHHHHhHh-----------CCCCEEEEecCCCCCcHHHHHHHHH
Q 024248          120 IPAGVPRK---------PG-MTRDDLFNINAGIVKTLCEGIAKC-----------CPKAIVNLISNPVNSTVPIAAEVFK  178 (270)
Q Consensus       120 i~ag~~~~---------~g-~~r~~~~~~N~~i~~~i~~~i~~~-----------~p~a~viv~sNPv~~~~~i~t~~~~  178 (270)
                      .+||....         .. .+....+..|+.....+++.+...           ...+.|+++|......         
T Consensus        85 ~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------  155 (257)
T 3tl3_A           85 NCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD---------  155 (257)
T ss_dssp             ECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C---------
T ss_pred             ECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC---------
Confidence            99986421         01 112345677877666666655443           2345677776443311         


Q ss_pred             HhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       179 ~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                         +.+..-.++.++..-..+-+.+|.+++  +..|++.++
T Consensus       156 ---~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~vn~v  191 (257)
T 3tl3_A          156 ---GQIGQAAYSASKGGVVGMTLPIARDLA--SHRIRVMTI  191 (257)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ---CCCCCccHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence               011111244444444557777888774  334554443

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.71  E-value=0.00019  Score=61.48  Aligned_cols=145  Identities=12%  Similarity=0.104  Sum_probs=72.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HHHhhcccc-Ccceee---eeccCCHHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDT-NAVVRG---FLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~dl~~~~~-~~~~~~---i~~t~d~~~al~~ADvVIi~  121 (270)
                      +++.|+||+|.+|..++..|+. |.  .|+++|++..... ..++..... ...+..   .....+..+.+...|++|.+
T Consensus         6 k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~~   82 (245)
T 3e9n_A            6 KIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVHA   82 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEEC
T ss_pred             CEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEEC
Confidence            4799999999999999999987 76  8999998753211 111110000 000000   00000111224478999999


Q ss_pred             CCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          122 AGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       122 ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ||......   .+   ....+..|+..    ++.+.+.+++..  +.|+++|.....    .        +.|..-.++.
T Consensus        83 Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~----~--------~~~~~~~Y~a  148 (245)
T 3e9n_A           83 AAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGN----G--------PHPGNTIYAA  148 (245)
T ss_dssp             C----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC----------------------CHHHHH
T ss_pred             CCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcccc----c--------CCCCchHHHH
Confidence            98753221   11   12345566655    444555554432  666666643321    0        2333344666


Q ss_pred             chhhHHHHHHHHHHHhC
Q 024248          192 TMLDVVRANTFVAEVLG  208 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~  208 (270)
                      ++.....+-+.++..++
T Consensus       149 sK~a~~~~~~~la~e~~  165 (245)
T 3e9n_A          149 SKHALRGLADAFRKEEA  165 (245)
T ss_dssp             HHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            65555667777888764

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.00022  Score=61.56  Aligned_cols=154  Identities=16%  Similarity=0.108  Sum_probs=84.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCccee-eeeccCCHHHH-------hCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVR-GFLGQQQLEDA-------LTGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~AD  116 (270)
                      +++.|+||+|.+|..++..|+..|....|+++++++....  ..++... . ..+. .+....+.++.       +...|
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~-~-~~~~~Dv~~~~~v~~~~~~~~~~~g~id   80 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDR-F-FYVVGDITEDSVLKQLVNAAVKGHGKID   80 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGG-E-EEEESCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCc-e-EEEECCCCCHHHHHHHHHHHHHhcCCcc
Confidence            4789999999999999999988753238888988753211  1111100 0 0000 01111112222       34789


Q ss_pred             EEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          117 IVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       117 vVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      ++|..||.....+    .+   ....+..|+.....+++.+    ++..  +.|+++|.....            .+.|.
T Consensus        81 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~------------~~~~~  146 (254)
T 3kzv_A           81 SLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACN------------MYFSS  146 (254)
T ss_dssp             EEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCC------------CSSCC
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhc------------cCCCC
Confidence            9999998742211    11   2234566766555555444    5432  667777654331            02333


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .-.++.++.....+-+.+|.++    ..+++.++-
T Consensus       147 ~~~Y~asK~a~~~~~~~la~e~----~~i~vn~v~  177 (254)
T 3kzv_A          147 WGAYGSSKAALNHFAMTLANEE----RQVKAIAVA  177 (254)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHC----TTSEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHhhc----cCcEEEEEe
Confidence            3345566555566778888886    245554444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.71  E-value=3.9e-05  Score=60.71  Aligned_cols=95  Identities=12%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      .+||+|+|+ |.+|..++..|...|.  +|+++|++.....  ++.... ...   ....++++++++++|+||.+.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~--~~a~~~-~~~---~~~~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVR--AFAEKY-EYE---YVLINDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHH--HHHHHH-TCE---EEECSCHHHHHHTCSEEEECSCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHH--HHHHHh-CCc---eEeecCHHHHhcCCCEEEEeCCCC
Confidence            469999997 9999999998888887  6999999754322  121110 011   122457788899999999997654


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCC
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~  168 (270)
                      .. -...                  ....++.+++.+++|.+.
T Consensus        92 ~~-~~~~------------------~~l~~g~~vid~~~p~~~  115 (144)
T 3oj0_A           92 TP-IVEE------------------RSLMPGKLFIDLGNPPNI  115 (144)
T ss_dssp             SC-SBCG------------------GGCCTTCEEEECCSSCSB
T ss_pred             Cc-EeeH------------------HHcCCCCEEEEccCCccC
Confidence            21 1100                  112357788889999873

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.71  E-value=5e-05  Score=65.95  Aligned_cols=64  Identities=16%  Similarity=0.221  Sum_probs=46.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|||+ |.+|..++..|+..|+  +|+++|+........++....       +.  +++++++++||+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g-------~~--~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG-------VT--ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT-------CE--ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC-------Cc--CCHHHHHhcCCEEEEEC
Confidence            79999997 9999999999999998  999988732222222232211       11  35567789999999987

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.71  E-value=8.7e-05  Score=64.15  Aligned_cols=157  Identities=15%  Similarity=0.074  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh---CCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---HHHHh----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---LEDAL----  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~---~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al----  112 (270)
                      .+++.|+||+|.+|..++..|++   .|.  +|+++|++....  ...++........+..+. .-+|   +++++    
T Consensus         6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998   788  999999975321  122232110001111110 1112   22222    


Q ss_pred             C-----CCC--EEEEcCCCCCCCC------Cc---hhhhHHhhHHHHHHHHHHHhHhC-----CCCEEEEecCCCCCcHH
Q 024248          113 T-----GMD--IVIIPAGVPRKPG------MT---RDDLFNINAGIVKTLCEGIAKCC-----PKAIVNLISNPVNSTVP  171 (270)
Q Consensus       113 ~-----~AD--vVIi~ag~~~~~g------~~---r~~~~~~N~~i~~~i~~~i~~~~-----p~a~viv~sNPv~~~~~  171 (270)
                      +     ..|  ++|.+||.....+      .+   ....+..|+.....+++.+....     ..+.||++|.....   
T Consensus        84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~---  160 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL---  160 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT---
T ss_pred             hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc---
Confidence            1     357  9999998643211      11   23456778888777777776543     22567777643321   


Q ss_pred             HHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          172 IAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       172 i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                               .+.|..-.++.++.....+-+.++..++  +  |++.++.
T Consensus       161 ---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~--i~vn~v~  196 (259)
T 1oaa_A          161 ---------QPYKGWGLYCAGKAARDMLYQVLAAEEP--S--VRVLSYA  196 (259)
T ss_dssp             ---------SCCTTCHHHHHHHHHHHHHHHHHHHHCT--T--EEEEEEE
T ss_pred             ---------CCCCCccHHHHHHHHHHHHHHHHHhhCC--C--ceEEEec
Confidence                     1234344466666555667788888875  2  6665554

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.70  E-value=0.00071  Score=58.71  Aligned_cols=159  Identities=13%  Similarity=0.029  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeee-eccCC---HHH-------Hh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGF-LGQQQ---LED-------AL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i-~~t~d---~~~-------al  112 (270)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|++....  ...++........+..+ ..-+|   .++       .+
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  999999975321  12233221001111111 01112   222       23


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ...|++|.+||.....   ..+   ....+..|+.....+++.+...   ...+.|+++|.....            .+.
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~  153 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLAS------------QPE  153 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGT------------SCC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccC------------CCC
Confidence            4789999999875321   111   2345677877766666666443   234566666543221            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      |..-.++.++..-..+-+.+|..++  +..|++.++-
T Consensus       154 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  188 (265)
T 3lf2_A          154 PHMVATSAARAGVKNLVRSMAFEFA--PKGVRVNGIL  188 (265)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            3333345554444557777888874  3345444443

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.67  E-value=0.00034  Score=61.10  Aligned_cols=158  Identities=14%  Similarity=0.173  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---------hHHHHhhccccCcceeeee-ccCC---HHH--
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGFL-GQQQ---LED--  110 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---------~~~~dl~~~~~~~~~~~i~-~t~d---~~~--  110 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|++.|++...         ....++...  ...+..+. .-+|   +++  
T Consensus         6 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            6 GKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHH
Confidence            35799999999999999999999998  99999998631         011112111  01111000 0112   222  


Q ss_pred             -----HhCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHH
Q 024248          111 -----ALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       111 -----al~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~  176 (270)
                           .+...|++|.+||......   .+   ....+..|+.....+++.+...   ...+.|+++|.........    
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~----  157 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAW----  157 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHH----
T ss_pred             HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC----
Confidence                 2347899999998753221   11   2234567777666666655432   2356777777554422100    


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                            ++..-.++.++..-..+-+.+|..++  +..|++..+
T Consensus       158 ------~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  192 (274)
T 3e03_A          158 ------WGAHTGYTLAKMGMSLVTLGLAAEFG--PQGVAINAL  192 (274)
T ss_dssp             ------HHHCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHhh--hcCEEEEEE
Confidence                  01112244555445567777888874  334554444

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.66  E-value=1.8e-05  Score=70.37  Aligned_cols=110  Identities=12%  Similarity=0.149  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh-CCCCEEEEcCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAGV  124 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al-~~ADvVIi~ag~  124 (270)
                      .|||+|+|+ |.+|+.++..|...|+  +|+++|+++...   ++.......... +.  .+..+++ .++|+||++.-.
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~~---~~~~~~g~~~~~-~~--~~~~~~~~~~~D~vilavk~   72 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKTI---TYYTVPHAPAQD-IV--VKGYEDVTNTFDVIIIAVKT   72 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEEE---EEESSTTSCCEE-EE--EEEGGGCCSCEEEEEECSCG
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCcE---EEEecCCeeccc-ee--cCchHhcCCCCCEEEEeCCc
Confidence            479999998 9999999999998887  999999975311   111110000111 11  1333555 899999998622


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      .                .+.++++.++.+. ++..|+.+.|-.+..         +.  +|.+++++-
T Consensus        73 ~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~---------~~--~~~~~v~~g  113 (294)
T 3g17_A           73 H----------------QLDAVIPHLTYLAHEDTLIILAQNGYGQL---------EH--IPFKNVCQA  113 (294)
T ss_dssp             G----------------GHHHHGGGHHHHEEEEEEEEECCSSCCCG---------GG--CCCSCEEEC
T ss_pred             c----------------CHHHHHHHHHHhhCCCCEEEEeccCcccH---------hh--CCCCcEEEE
Confidence            1                1234445555443 567788888988741         11  777787643

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.0004  Score=61.36  Aligned_cols=159  Identities=15%  Similarity=0.144  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCc-cEEEEEeCCCChh--HHHHhhccccCcceee----eeccCCHHHHh------
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQLEDAL------  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~-~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d~~~al------  112 (270)
                      .+++.|+||+|.+|..++..|++.|.. ..|++.|++....  ...++........+..    +....++++++      
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  112 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQE  112 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGG
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            347999999999999999999887642 2899999975321  1222221100111110    11122333333      


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       113 -~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                       ...|++|.+||.....+    .+   ....+..|+.....+++.+    ++. ..+.||++|.....            
T Consensus       113 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~------------  179 (287)
T 3rku_A          113 FKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK-NSGDIVNLGSIAGR------------  179 (287)
T ss_dssp             GCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGT------------
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEECChhhc------------
Confidence             36899999998643111    11   2345667766655555554    443 34667766643221            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .+.|..-.++.++..-..+-+.+|..++  +..|++.++
T Consensus       180 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  216 (287)
T 3rku_A          180 DAYPTGSIYCASKFAVGAFTDSLRKELI--NTKIRVILI  216 (287)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEEEEE
Confidence            1344444466665555667788888874  344554443

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.64  E-value=0.00033  Score=63.93  Aligned_cols=91  Identities=20%  Similarity=0.318  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|||. |.+|..+|..+...|+  +|..+|+.....      ..     .   ....++++.+++||+|+++.
T Consensus       168 ~l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~------~~-----~---~~~~sl~ell~~aDvVil~v  230 (340)
T 4dgs_A          168 SPKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG------VD-----W---IAHQSPVDLARDSDVLAVCV  230 (340)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT------SC-----C---EECSSHHHHHHTCSEEEECC
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc------cC-----c---eecCCHHHHHhcCCEEEEeC
Confidence            345679999998 9999999999998898  999999875421      00     0   11347889999999999986


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....   .++ .++  |    .+.++.   ..|++++|+++
T Consensus       231 P~t~---~t~-~li--~----~~~l~~---mk~gailIN~a  258 (340)
T 4dgs_A          231 AASA---ATQ-NIV--D----ASLLQA---LGPEGIVVNVA  258 (340)
T ss_dssp             ----------------C----HHHHHH---TTTTCEEEECS
T ss_pred             CCCH---HHH-HHh--h----HHHHhc---CCCCCEEEECC
Confidence            3211   111 111  1    233333   34788999887

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.59  E-value=0.00025  Score=60.70  Aligned_cols=147  Identities=17%  Similarity=0.113  Sum_probs=84.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hh--HHHHhhccccCcceeeee-ccCC---HHHHhC-----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTNAVVRGFL-GQQQ---LEDALT-----  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~--~~~dl~~~~~~~~~~~i~-~t~d---~~~al~-----  113 (270)
                      .+++.|+||+|.+|..++..|++.|.  .|++++.... ..  ...++....  ..+..+. ..+|   .++.++     
T Consensus         7 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            7 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999998  8888654432 11  122332211  1111000 0112   111111     


Q ss_pred             --------CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHH
Q 024248          114 --------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFK  178 (270)
Q Consensus       114 --------~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~  178 (270)
                              ..|++|.+||......   .+   ....+..|+.....+++.+...- +.+.|+++|.....          
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~----------  152 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR----------  152 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGT----------
T ss_pred             hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhc----------
Confidence                    2899999998753211   11   12345678777777777776542 34567777654321          


Q ss_pred             HhCCCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       179 ~~sg~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                        .+.|..-.++.++.....+-+.++++++
T Consensus       153 --~~~~~~~~Y~asKaa~~~~~~~la~e~~  180 (255)
T 3icc_A          153 --ISLPDFIAYSMTKGAINTMTFTLAKQLG  180 (255)
T ss_dssp             --SCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             --cCCCCcchhHHhHHHHHHHHHHHHHHHH
Confidence              1234333455665555567778888874

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.58  E-value=0.00012  Score=66.49  Aligned_cols=67  Identities=24%  Similarity=0.319  Sum_probs=50.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.+|..++..++..|+  +|+.+|++.......++  .     +   .. .++++.+++||+|++++.
T Consensus       148 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~--g-----~---~~-~~l~~~l~~aDvVil~vp  213 (334)
T 2dbq_A          148 VYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL--N-----A---EF-KPLEDLLRESDFVVLAVP  213 (334)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH--C-----C---EE-CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc--C-----c---cc-CCHHHHHhhCCEEEECCC
Confidence            45679999997 9999999999999998  99999997654111111  0     1   11 367788999999999874


Q ss_pred             C
Q 024248          124 V  124 (270)
Q Consensus       124 ~  124 (270)
                      .
T Consensus       214 ~  214 (334)
T 2dbq_A          214 L  214 (334)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.58  E-value=0.00091  Score=60.06  Aligned_cols=115  Identities=18%  Similarity=0.252  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC---------Chh--HHHHhhccccCcceeeeeccCCHHH----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------TPG--VTADISHMDTNAVVRGFLGQQQLED----  110 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~---------~~~--~~~dl~~~~~~~~~~~i~~t~d~~~----  110 (270)
                      .+++.|+||+|.+|..++..|+.+|.  +|++.|+..         ...  ...++..... .....+....+.++    
T Consensus         9 gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~~~   85 (319)
T 1gz6_A            9 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVKT   85 (319)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHHHH
Confidence            34799999999999999999999998  999988631         111  1122322100 00111111112222    


Q ss_pred             ---HhCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecC
Q 024248          111 ---ALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (270)
Q Consensus       111 ---al~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sN  164 (270)
                         .+...|++|..||......   .+   ....+..|+.....+++.+    ++. ..+.||++|.
T Consensus        86 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~grIV~vsS  151 (319)
T 1gz6_A           86 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTAS  151 (319)
T ss_dssp             HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECC
Confidence               2447899999998754321   11   2234667776655555544    443 3456666653

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.55  E-value=0.00013  Score=66.24  Aligned_cols=69  Identities=17%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....+||+|||. |.+|..++..++..|+  +|+.+|++......  ....    .+   ... ++++.+++||+|++++
T Consensus       152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~----g~---~~~-~l~e~l~~aDvVi~~v  218 (330)
T 2gcg_A          152 GLTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF----QA---EFV-STPELAAQSDFIVVAC  218 (330)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT----TC---EEC-CHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc----Cc---eeC-CHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999998898  99999987542211  1111    11   112 6778899999999987


Q ss_pred             CC
Q 024248          123 GV  124 (270)
Q Consensus       123 g~  124 (270)
                      ..
T Consensus       219 p~  220 (330)
T 2gcg_A          219 SL  220 (330)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.53  E-value=0.00042  Score=62.41  Aligned_cols=147  Identities=16%  Similarity=0.096  Sum_probs=80.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hhHHHHhhcc--ccCcceee----eeccCCHHHHhC----
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTNAVVRG----FLGQQQLEDALT----  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~~~dl~~~--~~~~~~~~----i~~t~d~~~al~----  113 (270)
                      ++|.|+||+|.+|..++..|++.|.  +|++.+++..   .....++.+.  .....+..    +....+++++++    
T Consensus         6 k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            6 KIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            4699999999999999999999998  9998887631   1111111110  00111111    111112333333    


Q ss_pred             ---CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          114 ---GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       114 ---~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                         ..|++|.+||......   .+   ....+..|+.....+++.+    ++. ..+.||++|.-...           .
T Consensus        84 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS~~~~-----------~  151 (324)
T 3u9l_A           84 EDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISSSSSA-----------G  151 (324)
T ss_dssp             HHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT-----------S
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEecchhc-----------c
Confidence               8999999998642111   11   2345677777666666555    443 34566666643221           0


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHh
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVL  207 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l  207 (270)
                      ...|..-.++.++.....+-+.++..+
T Consensus       152 ~~~~~~~~Y~asKaa~~~~~~~la~el  178 (324)
T 3u9l_A          152 GTPPYLAPYFAAKAAMDAIAVQYAREL  178 (324)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence            011212234555544455667777775

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.53  E-value=0.00045  Score=60.56  Aligned_cols=36  Identities=22%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .++|.|+||+|.+|..++..|+.+|.  .|++.+++..
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~   47 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVT   47 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            34799999999999999999999998  9999999864

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.51  E-value=0.00012  Score=67.02  Aligned_cols=72  Identities=22%  Similarity=0.293  Sum_probs=45.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      -++|||+|+|| |+||+.++..|++. .  +|++.|++.....  .+.+..  ..+. .+.....+++.++++|+||.++
T Consensus        14 g~~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~~~--~~~~~~--~~~~~d~~d~~~l~~~~~~~DvVi~~~   85 (365)
T 3abi_A           14 GRHMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNENLE--KVKEFA--TPLKVDASNFDKLVEVMKEFELVIGAL   85 (365)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHHHH--HHTTTS--EEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHHHH--HHhccC--CcEEEecCCHHHHHHHHhCCCEEEEec
Confidence            45799999998 99999999888654 4  8999999753211  111110  1111 0111224567789999999987


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      +
T Consensus        86 p   86 (365)
T 3abi_A           86 P   86 (365)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.50  E-value=0.00024  Score=65.13  Aligned_cols=99  Identities=20%  Similarity=0.230  Sum_probs=65.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ....++|+|||. |.||..+|..|...|+  +|+.+|++.... ...++. .         ....++++.++.||+|+++
T Consensus       161 ~l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-~---------~~~~~l~ell~~aDvV~l~  227 (351)
T 3jtm_A          161 DLEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-A---------KFVEDLNEMLPKCDVIVIN  227 (351)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-C---------EECSCHHHHGGGCSEEEEC
T ss_pred             cccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-C---------eEcCCHHHHHhcCCEEEEC
Confidence            355679999998 9999999999998898  999999875322 222221 0         1134688999999999998


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      .....   .++ .++  |    .+.++.   ..|++++|+++  .++|
T Consensus       228 ~Plt~---~t~-~li--~----~~~l~~---mk~gailIN~aRG~~vd  262 (351)
T 3jtm_A          228 MPLTE---KTR-GMF--N----KELIGK---LKKGVLIVNNARGAIME  262 (351)
T ss_dssp             SCCCT---TTT-TCB--S----HHHHHH---SCTTEEEEECSCGGGBC
T ss_pred             CCCCH---HHH-Hhh--c----HHHHhc---CCCCCEEEECcCchhhC
Confidence            74321   111 111  1    223333   34788999987  3455

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.64  E-value=1.4e-05  Score=67.46  Aligned_cols=66  Identities=12%  Similarity=0.109  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+.|||+|||+ |.+|+.++..|...|+  +|+++|++..   ...+...    .   +... +.+++++++|+||++..
T Consensus        17 ~~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g---~~~~-~~~~~~~~aDvVilav~   82 (201)
T 2yjz_A           17 EKQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----G---AEVL-CYSEAASRSDVIVLAVH   82 (201)
Confidence            34579999997 9999999999998888  8999998653   1112111    1   1112 55677899999999863

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.50  E-value=0.00025  Score=64.54  Aligned_cols=94  Identities=26%  Similarity=0.305  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|||. |.+|..+|..+...|+  +|+.+|+........++  .     ..    ..++++.+++||+|+++.
T Consensus       162 ~l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~--g-----~~----~~~l~ell~~aDvV~l~~  227 (335)
T 2g76_A          162 ELNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF--G-----VQ----QLPLEEIWPLCDFITVHT  227 (335)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT--T-----CE----ECCHHHHGGGCSEEEECC
T ss_pred             CCCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc--C-----ce----eCCHHHHHhcCCEEEEec
Confidence            345679999997 9999999999998888  99999987543211111  1     01    126788899999999986


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....   .++ .++  |    .+.   +....|++++|+++
T Consensus       228 P~t~---~t~-~li--~----~~~---l~~mk~gailIN~a  255 (335)
T 2g76_A          228 PLLP---STT-GLL--N----DNT---FAQCKKGVRVVNCA  255 (335)
T ss_dssp             CCCT---TTT-TSB--C----HHH---HTTSCTTEEEEECS
T ss_pred             CCCH---HHH-Hhh--C----HHH---HhhCCCCcEEEECC
Confidence            4321   111 111  1    122   33334788898886

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.50  E-value=0.00099  Score=57.49  Aligned_cols=157  Identities=11%  Similarity=0.108  Sum_probs=87.6

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceee----eeccCCHHHH-----
Q 024248           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRG----FLGQQQLEDA-----  111 (270)
Q Consensus        46 ~mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~----i~~t~d~~~a-----  111 (270)
                      .+++.|+||+  |.+|..++..|+..|.  .|++++++....   ...++.... ...+..    +....+++++     
T Consensus        20 ~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (267)
T 3gdg_A           20 GKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDVV   96 (267)
T ss_dssp             TCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHHH
Confidence            3579999998  8999999999999998  999999876422   222332110 001110    1111112222     


Q ss_pred             --hCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHH----hHhCCCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          112 --LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       112 --l~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                        +...|++|.+||......   .+   ....+..|+.....+.+.+    .+.. .+.|+++|.....           
T Consensus        97 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~-----------  164 (267)
T 3gdg_A           97 ADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITASMSGH-----------  164 (267)
T ss_dssp             HHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGT-----------
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEcccccc-----------
Confidence              346799999998754221   11   2234566765555555444    4433 4566666543321           


Q ss_pred             hCCCC-CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          180 VGTYD-PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       180 ~sg~p-~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ...++ ..-.++.++.....+-+.++.+++-.   +++..+.
T Consensus       165 ~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~---i~v~~v~  203 (267)
T 3gdg_A          165 IANFPQEQTSYNVAKAGCIHMARSLANEWRDF---ARVNSIS  203 (267)
T ss_dssp             SCCSSSCCHHHHHHHHHHHHHHHHHHHHTTTT---CEEEEEE
T ss_pred             ccCCCCCCCcchHHHHHHHHHHHHHHHHhccC---cEEEEEE
Confidence            11122 22335666655567888889988533   5544443

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.49  E-value=0.00032  Score=63.01  Aligned_cols=94  Identities=22%  Similarity=0.230  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|||. |.+|..++..+...|+  +|+.+|++.......++  .     ..    ..++++.+++||+|+++.
T Consensus       139 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~--g-----~~----~~~l~ell~~aDvV~l~~  204 (307)
T 1wwk_A          139 ELEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV--N-----GK----FVDLETLLKESDVVTIHV  204 (307)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT--T-----CE----ECCHHHHHHHCSEEEECC
T ss_pred             ccCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc--C-----cc----ccCHHHHHhhCCEEEEec
Confidence            345679999998 9999999999999898  99999997653211111  1     11    125778899999999987


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .....   .+ .++  |    .+.++.   ..|++++++++
T Consensus       205 p~~~~---t~-~li--~----~~~l~~---mk~ga~lin~a  232 (307)
T 1wwk_A          205 PLVES---TY-HLI--N----EERLKL---MKKTAILINTS  232 (307)
T ss_dssp             CCSTT---TT-TCB--C----HHHHHH---SCTTCEEEECS
T ss_pred             CCChH---Hh-hhc--C----HHHHhc---CCCCeEEEECC
Confidence            43211   11 111  1    122333   34788998886

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.46  E-value=0.0003  Score=60.77  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++..
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   40 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHLD   40 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            34799999999999999999999998  9999998753

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=97.45  E-value=0.0002  Score=64.70  Aligned_cols=94  Identities=17%  Similarity=0.221  Sum_probs=61.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|+|. |.+|..+|..+...|+  +|+.+|+......  .+.         ......++++.++.||+|+++.
T Consensus       136 ~l~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~--~~~---------~~~~~~~l~ell~~aDiV~l~~  201 (315)
T 3pp8_A          136 TREEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSWP--GVE---------SYVGREELRAFLNQTRVLINLL  201 (315)
T ss_dssp             CSTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCCT--TCE---------EEESHHHHHHHHHTCSEEEECC
T ss_pred             CcCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhhh--hhh---------hhcccCCHHHHHhhCCEEEEec
Confidence            345679999998 9999999999999998  9999998753210  010         0112246788899999999986


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....   .++ .++  |    .+   .+....|++++|+++
T Consensus       202 Plt~---~t~-~li--~----~~---~l~~mk~gailIN~a  229 (315)
T 3pp8_A          202 PNTA---QTV-GII--N----SE---LLDQLPDGAYVLNLA  229 (315)
T ss_dssp             CCCG---GGT-TCB--S----HH---HHTTSCTTEEEEECS
T ss_pred             CCch---hhh-hhc--c----HH---HHhhCCCCCEEEECC
Confidence            3211   111 111  1    12   233334788999987

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.45  E-value=0.00034  Score=63.97  Aligned_cols=98  Identities=20%  Similarity=0.262  Sum_probs=64.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|||. |.||..+|..+...|+  +|..+|+.........   ..        ....++++.++.||+|+++.
T Consensus       170 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~---g~--------~~~~~l~ell~~sDvV~l~~  235 (345)
T 4g2n_A          170 GLTGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALEE---GA--------IYHDTLDSLLGASDIFLIAA  235 (345)
T ss_dssp             CCTTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHT---TC--------EECSSHHHHHHTCSEEEECS
T ss_pred             ccCCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhhc---CC--------eEeCCHHHHHhhCCEEEEec
Confidence            345679999997 9999999999998898  9999999753221111   10        11247888999999999987


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ....   .++ .++  |    .+.+..   ..|++++|+++  ..+|
T Consensus       236 Plt~---~T~-~li--~----~~~l~~---mk~gailIN~aRG~~vd  269 (345)
T 4g2n_A          236 PGRP---ELK-GFL--D----HDRIAK---IPEGAVVINISRGDLIN  269 (345)
T ss_dssp             CCCG---GGT-TCB--C----HHHHHH---SCTTEEEEECSCGGGBC
T ss_pred             CCCH---HHH-HHh--C----HHHHhh---CCCCcEEEECCCCchhC
Confidence            3221   111 111  1    223333   34788999987  3455

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=97.43  E-value=0.0011  Score=62.56  Aligned_cols=163  Identities=18%  Similarity=0.172  Sum_probs=91.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee-eeeccCCHHHH-------hCC-CC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR-GFLGQQQLEDA-------LTG-MD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~-~i~~t~d~~~a-------l~~-AD  116 (270)
                      ...+.|+|++|.+|..++..|+.+|.  +|+++|++.......++........+. .+....+.++.       +.+ .|
T Consensus       213 gk~~LVTGgsgGIG~aiA~~La~~Ga--~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          213 GKVAVVTGAARGIGATIAEVFARDGA--TVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCEEEEeCCchHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            34799999999999999999999998  899999864321111111100000000 01111122222       224 89


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC---CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      +||++||......   .+   ....+..|+.....+.+.+....   +.+.||++|.-..       .     .+.+..-
T Consensus       291 ~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~-------~-----~g~~g~~  358 (454)
T 3u0b_A          291 ILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAG-------I-----AGNRGQT  358 (454)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHH-------H-----HCCTTCH
T ss_pred             EEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHh-------C-----CCCCCCH
Confidence            9999999764321   11   22456788888888888877642   4567777764211       0     1333333


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEEccC
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGH  222 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~h  222 (270)
                      .|+.++..-..|-+.+|..+.-.--.+++..+|--
T Consensus       359 ~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v  393 (454)
T 3u0b_A          359 NYATTKAGMIGLAEALAPVLADKGITINAVAPGFI  393 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSB
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcc
Confidence            45554433345667777776433223455556643

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=97.42  E-value=0.00042  Score=63.87  Aligned_cols=98  Identities=18%  Similarity=0.252  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|||. |.+|..+|..+...|+  +|+.+|+........+.  . .       . ..++++.++.||+|+++.
T Consensus       173 ~l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~--g-~-------~-~~~l~ell~~aDvV~l~~  238 (365)
T 4hy3_A          173 LIAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN--G-V-------E-PASLEDVLTKSDFIFVVA  238 (365)
T ss_dssp             CSSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT--T-C-------E-ECCHHHHHHSCSEEEECS
T ss_pred             ccCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc--C-e-------e-eCCHHHHHhcCCEEEEcC
Confidence            344579999997 9999999999988888  99999986432221111  1 0       1 136888999999999986


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ....   .++ .++  |    .+.   +....|++++|+++  .++|
T Consensus       239 Plt~---~T~-~li--~----~~~---l~~mk~gailIN~aRG~~vd  272 (365)
T 4hy3_A          239 AVTS---ENK-RFL--G----AEA---FSSMRRGAAFILLSRADVVD  272 (365)
T ss_dssp             CSSC---C----CC--C----HHH---HHTSCTTCEEEECSCGGGSC
T ss_pred             cCCH---HHH-hhc--C----HHH---HhcCCCCcEEEECcCCchhC
Confidence            4321   111 111  1    222   33334789999987  4455

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.42  E-value=0.00035  Score=63.82  Aligned_cols=68  Identities=19%  Similarity=0.212  Sum_probs=50.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEeCCCChhH-HHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~-~~g~~~eV~LvD~~~~~~~-~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      ....++|+|||. |.+|..++..+. ..|+  +|+.+|++..... ..++.       .   ...+++++.+++||+|++
T Consensus       160 ~l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~g-------~---~~~~~l~ell~~aDvVil  226 (348)
T 2w2k_A          160 NPRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKALG-------A---ERVDSLEELARRSDCVSV  226 (348)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHT-------C---EECSSHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhcC-------c---EEeCCHHHHhccCCEEEE
Confidence            345579999998 999999999998 8898  9999999764221 11111       1   112467788999999999


Q ss_pred             cCC
Q 024248          121 PAG  123 (270)
Q Consensus       121 ~ag  123 (270)
                      ++.
T Consensus       227 ~vp  229 (348)
T 2w2k_A          227 SVP  229 (348)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            873

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.37  E-value=0.00084  Score=59.36  Aligned_cols=76  Identities=21%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEE-EeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~L-vD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ++.|||+|+|++|.+|..++..+...+-. +|+. +|++.....-.|+........  .+..++|+++.++++|+||...
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~--gv~v~~dl~~ll~~~DVVIDfT   81 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQT--GVALTDDIERVCAEADYLIDFT   81 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCC--SCBCBCCHHHHHHHCSEEEECS
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCC--CceecCCHHHHhcCCCEEEEcC
Confidence            34579999998899999999888765433 5554 687642111111111100000  1233568888888999998864

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=97.37  E-value=0.00013  Score=65.14  Aligned_cols=94  Identities=22%  Similarity=0.282  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.+|..+|..|...|+  +|..+|++......     .         ...+++++.+++||+|+++..
T Consensus       120 l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~-----~---------~~~~~l~ell~~aDiV~l~~P  182 (290)
T 3gvx_A          120 LYGKALGILGY-GGIGRRVAHLAKAFGM--RVIAYTRSSVDQNV-----D---------VISESPADLFRQSDFVLIAIP  182 (290)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSCCCTTC-----S---------EECSSHHHHHHHCSEEEECCC
T ss_pred             eecchheeecc-CchhHHHHHHHHhhCc--EEEEEecccccccc-----c---------cccCChHHHhhccCeEEEEee
Confidence            44569999998 9999999999999899  99999987532110     0         123478889999999999874


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ...   .++ .++  |    .+.   +....|++++|+++  .++|
T Consensus       183 ~t~---~t~-~li--~----~~~---l~~mk~gailIN~aRG~~vd  215 (290)
T 3gvx_A          183 LTD---KTR-GMV--N----SRL---LANARKNLTIVNVARADVVS  215 (290)
T ss_dssp             CCT---TTT-TCB--S----HHH---HTTCCTTCEEEECSCGGGBC
T ss_pred             ccc---cch-hhh--h----HHH---HhhhhcCceEEEeehhcccC
Confidence            321   111 111  1    122   33334788999887  3455

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.34  E-value=0.00055  Score=62.61  Aligned_cols=67  Identities=25%  Similarity=0.386  Sum_probs=49.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.+|..++..+...|+  +|+.+|+........++. .         ....++++.++.||+|+++..
T Consensus       166 l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-~---------~~~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          166 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-L---------QRVSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-C---------EECSSHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-C---------eecCCHHHHHhcCCEEEEcCC
Confidence            45679999997 9999999999998898  999999875432221111 0         112367788999999999864

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.34  E-value=0.0011  Score=61.39  Aligned_cols=72  Identities=17%  Similarity=0.299  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCCchHHHHHH-HHHhCCC-ccEEEEEeCCCChhHH-HHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~-~l~~~g~-~~eV~LvD~~~~~~~~-~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      .++||+|+||+|++|.-+.. +|..+++ ..+++++.... .|+. .++...  ...   +...++. +.+.++|+||.+
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~---v~~~~~~-~~~~~vDvvf~a   75 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETT---LKDATSI-DDLKKCDVIITC   75 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCB---CEETTCH-HHHHTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceE---EEeCCCh-hHhcCCCEEEEC
Confidence            46899999999999999998 8877774 23888886542 2221 233211  111   1122244 457899999998


Q ss_pred             CC
Q 024248          122 AG  123 (270)
Q Consensus       122 ag  123 (270)
                      .|
T Consensus        76 ~~   77 (377)
T 3uw3_A           76 QG   77 (377)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=97.33  E-value=0.00022  Score=64.62  Aligned_cols=108  Identities=17%  Similarity=0.199  Sum_probs=67.3

Q ss_pred             ccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHH
Q 024248           31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLED  110 (270)
Q Consensus        31 ~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~  110 (270)
                      +.|.+..  .......++|+|||. |.+|..+|..+...|+  +|+.+|+.......  +..         .....++++
T Consensus       124 ~~W~~~~--~~~~l~gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~--~~~---------~~~~~~l~e  187 (324)
T 3evt_A          124 RQWALPM--TTSTLTGQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPADH--FHE---------TVAFTATAD  187 (324)
T ss_dssp             CCSSCSS--CCCCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCCTT--CSE---------EEEGGGCHH
T ss_pred             CCcccCC--CCccccCCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchhHh--Hhh---------ccccCCHHH
Confidence            4566543  112345569999998 9999999999999999  99999987532110  110         011236778


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      .+++||+|+++.....   .++ .++  |    .+.   +....|++++|+++  .++|
T Consensus       188 ll~~aDvV~l~lPlt~---~t~-~li--~----~~~---l~~mk~gailIN~aRG~~vd  233 (324)
T 3evt_A          188 ALATANFIVNALPLTP---TTH-HLF--S----TEL---FQQTKQQPMLINIGRGPAVD  233 (324)
T ss_dssp             HHHHCSEEEECCCCCG---GGT-TCB--S----HHH---HHTCCSCCEEEECSCGGGBC
T ss_pred             HHhhCCEEEEcCCCch---HHH-Hhc--C----HHH---HhcCCCCCEEEEcCCChhhh
Confidence            8999999999863211   111 111  1    122   33334788999987  3454

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.32  E-value=0.0003  Score=63.37  Aligned_cols=67  Identities=18%  Similarity=0.394  Sum_probs=50.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|||. |.+|..++..+...|+  +|+.+|++.......++   .    ..   . .++++.+++||+|+++.
T Consensus       139 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~---~-~~l~ell~~aDvVvl~~  204 (313)
T 2ekl_A          139 ELAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKAEKI---N----AK---A-VSLEELLKNSDVISLHV  204 (313)
T ss_dssp             CCTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CE---E-CCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHHHhc---C----ce---e-cCHHHHHhhCCEEEEec
Confidence            355679999997 9999999999999998  99999997653221111   1    11   1 26778899999999987


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      .
T Consensus       205 P  205 (313)
T 2ekl_A          205 T  205 (313)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.32  E-value=0.0008  Score=61.67  Aligned_cols=98  Identities=19%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-----CccEEEEEeCCCChhHHHHhhccccC--cceeeeeccCCHHHHhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g-----~~~eV~LvD~~~~~~~~~dl~~~~~~--~~~~~i~~t~d~~~al~~ADvV  118 (270)
                      .|||+|+||+|++|..+...|..++     .. ||+++......++..+-.+....  ..+. +.. .+. ++++++|+|
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~~~agk~~~~~~~~l~~~~~~~-~~~-~~~-~~~~~~DvV   84 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAATSAGSTLGEHHPHLTPLAHRV-VEP-TEA-AVLGGHDAV   84 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEESSCTTSBGGGTCTTCGGGTTCB-CEE-CCH-HHHTTCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECCCcCCCchhhhcccccccceee-ecc-CCH-HHhcCCCEE
Confidence            3699999999999999999998877     43 67776433222221221111000  0111 111 243 557899999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCC
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv  166 (270)
                      |.+.|...                .+++++.+ +.  .+++|-.|++-
T Consensus        85 f~alg~~~----------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           85 FLALPHGH----------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             EECCTTSC----------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             EECCCCcc----------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            99975431                14455555 32  46777777764

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.31  E-value=0.0012  Score=60.92  Aligned_cols=70  Identities=17%  Similarity=0.329  Sum_probs=45.4

Q ss_pred             CeEEEEcCCCchHHHHHH-HHHhCCC-ccEEEEEeCCCChhHH-HHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~-~l~~~g~-~~eV~LvD~~~~~~~~-~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|+||+|++|..+.. +|..+++ ..+++++.... .|+. .++...  ...   +...++. +.++++|+||.+.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~---~~~~~~~-~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGM---LHDAFDI-ESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCB---CEETTCH-HHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceE---EEecCCh-hHhccCCEEEECCC
Confidence            699999999999999998 8887774 24888876543 3322 222211  111   1222244 45789999999865

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=97.30  E-value=0.00052  Score=65.41  Aligned_cols=115  Identities=18%  Similarity=0.172  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-----hHHHHhhccccCcceeee----eccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHMDTNAVVRGF----LGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-----~~~~dl~~~~~~~~~~~i----~~t~d~~~al~~A  115 (270)
                      +..+|.|+||+|.+|..++..|+.+|. ..|++++++...     ....++....  ..+..+    ....++++.++.+
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHHHH
Confidence            346899999999999999999998887 259999987531     1112333211  111111    1111234445554


Q ss_pred             ------CEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          116 ------DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       116 ------DvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                            |.||+++|......   .+   ....+..|+.....+.+.+.+. +...|+++|
T Consensus       302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~S  360 (486)
T 2fr1_A          302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  360 (486)
T ss_dssp             CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEc
Confidence                  99999999754221   11   1234567888888888888764 345566565

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=97.28  E-value=0.00054  Score=66.03  Aligned_cols=78  Identities=23%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             ccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHH
Q 024248           31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLED  110 (270)
Q Consensus        31 ~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~  110 (270)
                      +-|.+..+.. .....++|+|||. |.+|+.+|..|...|+  +|+.+|+......+.++.       +   ... ++++
T Consensus       128 g~w~~~~~~~-~~l~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~---~~~-~l~e  192 (529)
T 1ygy_A          128 HTWKRSSFSG-TEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------I---ELL-SLDD  192 (529)
T ss_dssp             TCCCGGGCCB-CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------C---EEC-CHHH
T ss_pred             CCCcccCcCc-cccCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------c---EEc-CHHH
Confidence            3475432221 2345679999997 9999999999999898  999999875432222221       1   112 5778


Q ss_pred             HhCCCCEEEEcCC
Q 024248          111 ALTGMDIVIIPAG  123 (270)
Q Consensus       111 al~~ADvVIi~ag  123 (270)
                      .+++||+|+++..
T Consensus       193 ~~~~aDvV~l~~P  205 (529)
T 1ygy_A          193 LLARADFISVHLP  205 (529)
T ss_dssp             HHHHCSEEEECCC
T ss_pred             HHhcCCEEEECCC
Confidence            8999999999874

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=97.27  E-value=0.00079  Score=60.59  Aligned_cols=147  Identities=11%  Similarity=0.050  Sum_probs=80.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--h---HHHHhhc-cccCcceee----eeccCCHHHHhC---
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G---VTADISH-MDTNAVVRG----FLGQQQLEDALT---  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~---~~~dl~~-~~~~~~~~~----i~~t~d~~~al~---  113 (270)
                      ++|.|+||+|.+|..++..|+.+|.  +|++++++...  .   ....+.. ......+..    +....+++++++   
T Consensus         3 k~vlVTGas~GIG~ala~~L~~~G~--~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            3 TVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4689999999999999999999998  77787765321  1   1111110 000011111    111112333444   


Q ss_pred             --CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHH----HhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          114 --GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       114 --~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                        ..|++|.+||......   .+   ....+..|+.....+++.    +++. ..+.||++|.....            .
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-~~g~IV~isS~~~~------------~  147 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGSVGGL------------M  147 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEGGGT------------S
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCcccc------------c
Confidence              4899999998653211   11   223566777666666555    4433 34566666533221            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLG  208 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~  208 (270)
                      +.|..-.++.++.....+-+.++..+.
T Consensus       148 ~~~~~~~Y~aSK~a~~~~~~~la~el~  174 (327)
T 1jtv_A          148 GLPFNDVYCASKFALEGLCESLAVLLL  174 (327)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence            233333455565555567777777763

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.25  E-value=0.0064  Score=52.90  Aligned_cols=158  Identities=16%  Similarity=0.188  Sum_probs=88.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-ee-eeeccCCHHHHh--CCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQLEDAL--TGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~~-~i~~t~d~~~al--~~ADvVIi~a  122 (270)
                      +.+.|+||++-+|..++..|++.|.  .|++.|++........+........ +. .+....+.++.+  -.-|++|..|
T Consensus        10 KvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNA   87 (247)
T 4hp8_A           10 RKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNA   87 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECC
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECC
Confidence            3678889999999999999999998  9999999864322222222111000 00 011111122222  3579999999


Q ss_pred             CCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          123 GVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       123 g~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      |......   .+   ....+..|+...    +.+++.+.+....+.||++|.-...            .+.|..-.|+.+
T Consensus        88 Gi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~------------~g~~~~~~Y~as  155 (247)
T 4hp8_A           88 GIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSF------------QGGIRVPSYTAA  155 (247)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT------------SCCSSCHHHHHH
T ss_pred             CCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhC------------CCCCCChHHHHH
Confidence            8754321   11   233456676554    4555556555556777777643221            122322224444


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +-.-..|-+.+|.+++  +..|++..+-
T Consensus       156 Kaav~~ltr~lA~Ela--~~gIrVNaV~  181 (247)
T 4hp8_A          156 KHGVAGLTKLLANEWA--AKGINVNAIA  181 (247)
T ss_dssp             HHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHh--hcCeEEEEEe
Confidence            4444456777888875  4556665554

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.22  E-value=0.0013  Score=60.84  Aligned_cols=109  Identities=28%  Similarity=0.290  Sum_probs=66.2

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhcc--c------cCcc-ee------eeecc
Q 024248           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM--D------TNAV-VR------GFLGQ  105 (270)
Q Consensus        42 ~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~--~------~~~~-~~------~i~~t  105 (270)
                      .+.++.||+|+|+ |.+|...+..+...|.  +|+.+|++.... .+.++.-.  .      .... .+      .....
T Consensus       180 ~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~  256 (381)
T 3p2y_A          180 GTVKPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQ  256 (381)
T ss_dssp             CEECCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHH
T ss_pred             CCcCCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhH
Confidence            4567789999998 9999999999988887  999999986422 22222100  0      0000 00      00112


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC
Q 024248          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       106 ~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP  165 (270)
                      .++++++++||+||.++..|.....   .++      .++.++.+   .|+++|+.++-+
T Consensus       257 ~~l~e~l~~aDIVI~tv~iPg~~ap---~Lv------t~emv~~M---kpGsVIVDvA~d  304 (381)
T 3p2y_A          257 QALEDAITKFDIVITTALVPGRPAP---RLV------TAAAATGM---QPGSVVVDLAGE  304 (381)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCC---CCB------CHHHHHTS---CTTCEEEETTGG
T ss_pred             HHHHHHHhcCCEEEECCCCCCcccc---eee------cHHHHhcC---CCCcEEEEEeCC
Confidence            3567889999999998765532211   011      13444444   378888887633

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.20  E-value=0.0013  Score=61.80  Aligned_cols=92  Identities=18%  Similarity=0.120  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|+|. |.||..++..|...|.  +|+.+|+++...... ....   .     . ..++++++++||+|+.+.+
T Consensus       209 L~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A-~~~G---~-----~-~~sL~eal~~ADVVilt~g  275 (436)
T 3h9u_A          209 IAGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQA-AMEG---Y-----Q-VLLVEDVVEEAHIFVTTTG  275 (436)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTT---C-----E-ECCHHHHTTTCSEEEECSS
T ss_pred             ccCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHH-HHhC---C-----e-ecCHHHHHhhCCEEEECCC
Confidence            34569999998 9999999999999998  999999974322111 0111   0     1 1368899999999998765


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP  165 (270)
                      ...--+.                 +.+....|+++|++++++
T Consensus       276 t~~iI~~-----------------e~l~~MK~gAIVINvgRg  300 (436)
T 3h9u_A          276 NDDIITS-----------------EHFPRMRDDAIVCNIGHF  300 (436)
T ss_dssp             CSCSBCT-----------------TTGGGCCTTEEEEECSSS
T ss_pred             CcCccCH-----------------HHHhhcCCCcEEEEeCCC
Confidence            4311110                 112223478899998865

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.16  E-value=0.0013  Score=61.43  Aligned_cols=104  Identities=22%  Similarity=0.304  Sum_probs=65.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcce-----------eeee-------
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVV-----------RGFL-------  103 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~-----------~~i~-------  103 (270)
                      +.++.||+|+|+ |.+|...+..+...|.  +|+.+|++.... .+.++...  +..+           ..+.       
T Consensus       187 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~--~~~~~~~~~~d~~~~~~ya~e~s~~~  261 (405)
T 4dio_A          187 TVPAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAK--FIAVEDEEFKAAETAGGYAKEMSGEY  261 (405)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCE--ECCCCC-----------------CHH
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCc--eeecccccccccccccchhhhcchhh
Confidence            556789999998 9999999999998898  999999987532 22222110  0000           0000       


Q ss_pred             ---ccCCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          104 ---GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       104 ---~t~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                         ...++++++++||+||.++..|.....   .++      .++.++.+   .|.++|+.++
T Consensus       262 ~~~~~~~l~e~l~~aDVVI~tvlipg~~ap---~Lv------t~emv~~M---k~GsVIVDvA  312 (405)
T 4dio_A          262 QVKQAALVAEHIAKQDIVITTALIPGRPAP---RLV------TREMLDSM---KPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHHHHHTCSEEEECCCCSSSCCC---CCB------CHHHHTTS---CTTCEEEETT
T ss_pred             hhhhHhHHHHHhcCCCEEEECCcCCCCCCC---EEe------cHHHHhcC---CCCCEEEEEe
Confidence               012567889999999998866532221   111      13344443   4788888876

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.15  E-value=0.0025  Score=56.41  Aligned_cols=97  Identities=20%  Similarity=0.197  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+.++|+|+|+ |.+|..++..+...|.  +|+.+|++.....  .+....  ...  + ...++++.++++|+|+.++.
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g--~~~--~-~~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLA--RIAEMG--MEP--F-HISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT--SEE--E-EGGGHHHHTTTCSEEEECCS
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHCC--Cee--c-ChhhHHHHhcCCCEEEECCC
Confidence            34569999997 9999999999999998  9999998643211  111111  111  1 12357788999999999873


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNS  168 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~  168 (270)
                      .    +.     +  |.    +.   +....|++++++++ +|.+.
T Consensus       223 ~----~~-----i--~~----~~---l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          223 A----LV-----V--TA----NV---LAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             S----CC-----B--CH----HH---HHHSCTTCEEEECSSTTCSB
T ss_pred             h----HH-----h--CH----HH---HHhcCCCCEEEEecCCCCCC
Confidence            2    11     1  11    12   22234788999987 77664

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.14  E-value=0.00075  Score=62.74  Aligned_cols=68  Identities=21%  Similarity=0.253  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ....++|+|||. |.||..+|..+...|+  +|+.+|+..... ...++. .         ....++++.++.||+|+++
T Consensus       188 ~l~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G-~---------~~~~~l~ell~~aDvV~l~  254 (393)
T 2nac_A          188 DLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-L---------TWHATREDMYPVCDVVTLN  254 (393)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-C---------EECSSHHHHGGGCSEEEEC
T ss_pred             cCCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcC-c---------eecCCHHHHHhcCCEEEEe
Confidence            345679999998 9999999999998888  999999875322 111111 0         1123677889999999998


Q ss_pred             CC
Q 024248          122 AG  123 (270)
Q Consensus       122 ag  123 (270)
                      ..
T Consensus       255 ~P  256 (393)
T 2nac_A          255 CP  256 (393)
T ss_dssp             SC
T ss_pred             cC
Confidence            74

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=97.12  E-value=0.00061  Score=61.32  Aligned_cols=62  Identities=21%  Similarity=0.230  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|||. |.+|..++..+...|+  +|+.+|++.....      .          ...++++.++.||+|+++.
T Consensus       141 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------~----------~~~~l~ell~~aDvV~l~~  201 (311)
T 2cuk_A          141 DLQGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------Y----------PFLSLEELLKEADVVSLHT  201 (311)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------S----------CBCCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------c----------ccCCHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999998898  9999998754221      1          0236778899999999986


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      .
T Consensus       202 p  202 (311)
T 2cuk_A          202 P  202 (311)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=97.12  E-value=0.00075  Score=60.52  Aligned_cols=90  Identities=21%  Similarity=0.218  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.+|..+|..+...|+  +|+.+|++.. .   +  ..         ....++++.++.||+|+++..
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~---~--~~---------~~~~~l~ell~~aDvV~l~~P  183 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E---G--PW---------RFTNSLEEALREARAAVCALP  183 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C---S--SS---------CCBSCSHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c---c--Cc---------ccCCCHHHHHhhCCEEEEeCc
Confidence            45679999997 9999999999999998  9999998653 1   1  10         112357788999999999873


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      ...   .++ .++  |    .+.   +....|++++++++.
T Consensus       184 ~~~---~t~-~~i--~----~~~---l~~mk~gailin~sr  211 (303)
T 1qp8_A          184 LNK---HTR-GLV--K----YQH---LALMAEDAVFVNVGR  211 (303)
T ss_dssp             CST---TTT-TCB--C----HHH---HTTSCTTCEEEECSC
T ss_pred             Cch---HHH-HHh--C----HHH---HhhCCCCCEEEECCC
Confidence            321   111 111  1    122   233347889998873

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.11  E-value=0.00097  Score=60.53  Aligned_cols=65  Identities=22%  Similarity=0.269  Sum_probs=49.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.+|..++..+...|+  +|+.+|+..... ..++  .         ....++++.++.||+|+++..
T Consensus       144 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~--~---------~~~~~l~ell~~aDvV~l~~p  208 (333)
T 1j4a_A          144 VRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK--G---------YYVDSLDDLYKQADVISLHVP  208 (333)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT--T---------CBCSCHHHHHHHCSEEEECSC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh--C---------eecCCHHHHHhhCCEEEEcCC
Confidence            44569999998 9999999999998898  999999876432 1111  1         012367788999999999873

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.11  E-value=0.0021  Score=60.36  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|. |.||..++..+...|.  +|+.+|+++...... ....     ..    ..++++++++||+||.+.|
T Consensus       218 L~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A-~~~G-----~~----v~~Leeal~~ADIVi~atg  284 (435)
T 3gvp_A          218 FGGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQA-CMDG-----FR----LVKLNEVIRQVDIVITCTG  284 (435)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTT-----CE----ECCHHHHTTTCSEEEECSS
T ss_pred             ecCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHH-HHcC-----CE----eccHHHHHhcCCEEEECCC
Confidence            34568999998 9999999999998898  999999875321111 1111     01    1367899999999999754


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP  165 (270)
                      .+.   .     +  |    .+.++.+   .|++++++++.+
T Consensus       285 t~~---l-----I--~----~e~l~~M---K~gailINvgrg  309 (435)
T 3gvp_A          285 NKN---V-----V--T----REHLDRM---KNSCIVCNMGHS  309 (435)
T ss_dssp             CSC---S-----B--C----HHHHHHS---CTTEEEEECSST
T ss_pred             Ccc---c-----C--C----HHHHHhc---CCCcEEEEecCC
Confidence            331   1     1  1    1223333   478899999854

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.10  E-value=0.00055  Score=62.17  Aligned_cols=95  Identities=23%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.+|..+|..+...|+  +|+.+|+..... .   ..   .  ..    ..++++.++.||+|+++..
T Consensus       143 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~---~~---~--~~----~~~l~ell~~aDvV~~~~P  206 (333)
T 1dxy_A          143 LGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG-D---HP---D--FD----YVSLEDLFKQSDVIDLHVP  206 (333)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS-C---CT---T--CE----ECCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-h---Hh---c--cc----cCCHHHHHhcCCEEEEcCC
Confidence            44569999998 9999999999998898  999999875422 1   10   0  11    1267788999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ...   .++ .++  |    .+.++.   ..|++++|+++  .++|
T Consensus       207 ~~~---~t~-~li--~----~~~l~~---mk~ga~lIn~srg~~vd  239 (333)
T 1dxy_A          207 GIE---QNT-HII--N----EAAFNL---MKPGAIVINTARPNLID  239 (333)
T ss_dssp             CCG---GGT-TSB--C----HHHHHH---SCTTEEEEECSCTTSBC
T ss_pred             Cch---hHH-HHh--C----HHHHhh---CCCCcEEEECCCCcccC
Confidence            221   111 111  1    223333   34788999886  4455

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.10  E-value=0.00099  Score=60.47  Aligned_cols=67  Identities=24%  Similarity=0.314  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.+|..++..+...|+  +|+.+|++.......++.       .   .. .++++.+++||+|++++.
T Consensus       144 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~---~~-~~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          144 LYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKELK-------A---RY-MDIDELLEKSDIVILALP  209 (333)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHHT-------E---EE-CCHHHHHHHCSEEEECCC
T ss_pred             CCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhcC-------c---ee-cCHHHHHhhCCEEEEcCC
Confidence            45679999998 9999999999998898  999999976532111110       1   11 267788899999999874


Q ss_pred             C
Q 024248          124 V  124 (270)
Q Consensus       124 ~  124 (270)
                      .
T Consensus       210 ~  210 (333)
T 2d0i_A          210 L  210 (333)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.08  E-value=0.0058  Score=52.83  Aligned_cols=158  Identities=13%  Similarity=0.128  Sum_probs=86.3

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCCCChh-HHH-HhhccccCcceeeee-ccCCH----------HHH
Q 024248           47 FKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-DISHMDTNAVVRGFL-GQQQL----------EDA  111 (270)
Q Consensus        47 mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~-dl~~~~~~~~~~~i~-~t~d~----------~~a  111 (270)
                      +.+.|+||+|  -+|..+|..|++.|.  .|++.|+++... ... .+.... ......+. .-+|.          .+.
T Consensus         7 K~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            7 KTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             CEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4688999866  699999999999998  999999986422 122 222211 11111010 01121          223


Q ss_pred             hCCCCEEEEcCCCCCCC---C----Cchhhh---HHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          112 LTGMDIVIIPAGVPRKP---G----MTRDDL---FNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~---g----~~r~~~---~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                      +-..|++|..+|.....   +    .+..++   +..|+.....++.......+ .+.||++|.-...            
T Consensus        84 ~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~------------  151 (256)
T 4fs3_A           84 VGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE------------  151 (256)
T ss_dssp             HCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT------------
T ss_pred             hCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc------------
Confidence            55789999998864211   1    112221   23455444445555544443 4677777643221            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .+.|..-.|+.++-.-..|-+.+|.+++  |..|++..+-.
T Consensus       152 ~~~~~~~~Y~asKaal~~ltr~lA~Ela--~~gIrVN~V~P  190 (256)
T 4fs3_A          152 FAVQNYNVMGVAKASLEANVKYLALDLG--PDNIRVNAISA  190 (256)
T ss_dssp             SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEEec
Confidence            1233333345554444557778888874  55676666653

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.07  E-value=0.00012  Score=64.50  Aligned_cols=64  Identities=9%  Similarity=0.100  Sum_probs=37.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEE-EEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV-~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .|||+|||+ |.+|..++..|+.. +  +| .++|+++...  ..+....  ..     .+++++++++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~~--~~~~~~~--g~-----~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDRA--RNLAEVY--GG-----KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHHH--HHHHHHT--CC-----CCCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHHH--HHHHHHc--CC-----ccCCHHHHHhcCCEEEEeC
Confidence            379999997 99999999888776 5  88 4899864322  2222110  00     1335656788999999986

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=97.06  E-value=0.0013  Score=61.57  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=67.1

Q ss_pred             ccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHH
Q 024248           31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLED  110 (270)
Q Consensus        31 ~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~  110 (270)
                      +.|.+..... .....++|+|||. |.+|+.+|..+...|+  +|+.||+.....      ..    ..   ....++++
T Consensus       142 g~W~~~~~~~-~el~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~yd~~~~~~------~~----~~---~~~~sl~e  204 (416)
T 3k5p_A          142 GGWEKTAIGS-REVRGKTLGIVGY-GNIGSQVGNLAESLGM--TVRYYDTSDKLQ------YG----NV---KPAASLDE  204 (416)
T ss_dssp             TCCCCCCTTC-CCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCCCC------BT----TB---EECSSHHH
T ss_pred             ccccccCCCC-ccCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCcchhc------cc----Cc---EecCCHHH
Confidence            3465543221 2345679999997 9999999999999999  999999864211      00    00   11347889


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      .++.||+|+++.....   .++ .++  |    .+.   +....|++++|+++  .++|
T Consensus       205 ll~~aDvV~lhvPlt~---~T~-~li--~----~~~---l~~mk~gailIN~aRG~vvd  250 (416)
T 3k5p_A          205 LLKTSDVVSLHVPSSK---STS-KLI--T----EAK---LRKMKKGAFLINNARGSDVD  250 (416)
T ss_dssp             HHHHCSEEEECCCC---------CCB--C----HHH---HHHSCTTEEEEECSCTTSBC
T ss_pred             HHhhCCEEEEeCCCCH---HHh-hhc--C----HHH---HhhCCCCcEEEECCCChhhh
Confidence            9999999999863221   111 111  1    122   33334788999987  4455

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.06  E-value=0.0012  Score=58.29  Aligned_cols=79  Identities=16%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhcc-ccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHM-DTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~-~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++....  ...++... ........+....+++++++++|+||.+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            345899999889999999999999998  799999975322  12223211 0000000111112355678899999999


Q ss_pred             CCCC
Q 024248          122 AGVP  125 (270)
Q Consensus       122 ag~~  125 (270)
                      +|..
T Consensus       196 ag~g  199 (287)
T 1lu9_A          196 GAIG  199 (287)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            9754

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=97.05  E-value=0.0023  Score=61.35  Aligned_cols=116  Identities=17%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-----hHHHHhhccccCcceeeee-ccCC---HHHHhCC-
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHMDTNAVVRGFL-GQQQ---LEDALTG-  114 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-----~~~~dl~~~~~~~~~~~i~-~t~d---~~~al~~-  114 (270)
                      +..+|.|+|++|.+|..++..|+.+|. ..|++++++...     ....++....  ..+..+. ..+|   +++.++. 
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dvtd~~~v~~~~~~~  334 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGA-ERLVLTSRRGPEAPGAAELAEELRGHG--CEVVHAACDVAERDALAALVTAY  334 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHTTT--CEEEEEECCSSCHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-cEEEEEecCCcccHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHhcC
Confidence            346899999999999999999999887 358999987521     1122333211  1111110 1122   3444543 


Q ss_pred             -CCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          115 -MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       115 -ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                       .|+||+++|......   .+   ....+..|+.....+.+.+.+..+...|+++|
T Consensus       335 ~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~S  390 (511)
T 2z5l_A          335 PPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFS  390 (511)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEE
T ss_pred             CCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEe
Confidence             899999999754221   11   12345678888888877765431334455554

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.05  E-value=0.00044  Score=63.75  Aligned_cols=71  Identities=23%  Similarity=0.470  Sum_probs=45.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ++||+|+||+|++|..+...|..+++ ..++.++......|+...+...    .+. +... +. +.+.++|+||.+.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~----~~~-~~~~-~~-~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ----DIT-IEET-TE-TAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTE----EEE-EEEC-CT-TTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCC----Cce-EeeC-CH-HHhcCCCEEEECCC
Confidence            57999999999999999998888743 3477887654433332222111    111 1111 22 34789999999865

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.04  E-value=0.021  Score=49.83  Aligned_cols=156  Identities=16%  Similarity=0.091  Sum_probs=88.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH-HHhhccccCcc-ee-eeeccCC-------HHHHhCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADISHMDTNAV-VR-GFLGQQQ-------LEDALTGMD  116 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~-~dl~~~~~~~~-~~-~i~~t~d-------~~~al~~AD  116 (270)
                      +.+.|+||++-+|..++..|++.|.  .|++.|++++.... ..+........ +. .+....+       ..+.+-.-|
T Consensus         8 KvalVTGas~GIG~aia~~la~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD   85 (258)
T 4gkb_A            8 KVVIVTGGASGIGGAISMRLAEERA--IPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLD   85 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            4688999999999999999999998  99999998753222 12221110000 00 0110111       122356789


Q ss_pred             EEEEcCCCCCCCC--Cch---hhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          117 IVIIPAGVPRKPG--MTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       117 vVIi~ag~~~~~g--~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      ++|..||......  .+.   ...+..|+..    .+.+++.+++.  .+.||+++.-..          ..  +.|..-
T Consensus        86 iLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~----------~~--~~~~~~  151 (258)
T 4gkb_A           86 GLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--RGAIVNISSKTA----------VT--GQGNTS  151 (258)
T ss_dssp             EEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCTHH----------HH--CCSSCH
T ss_pred             EEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEeehhh----------cc--CCCCch
Confidence            9999998753322  222   2234556544    45555555443  367777764221          11  344333


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|+.++-.-..|-+.+|.+++  +..|++..+-
T Consensus       152 ~Y~asKaav~~ltr~lA~ela--~~gIrVN~V~  182 (258)
T 4gkb_A          152 GYCASKGAQLALTREWAVALR--EHGVRVNAVI  182 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            455555444557788888875  4556555554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.03  E-value=0.0038  Score=56.16  Aligned_cols=128  Identities=16%  Similarity=0.150  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh-CCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~-la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al-~~ADvVIi~ag  123 (270)
                      .+||.|+|. |-.|.+ +|..|+.+|+  +|.++|.+........|....  ..+  ..+ .+.++.. .++|+||.+.|
T Consensus         4 ~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g--i~v--~~g-~~~~~l~~~~~d~vV~Spg   75 (326)
T 3eag_A            4 MKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG--IDV--YEG-FDAAQLDEFKADVYVIGNV   75 (326)
T ss_dssp             CCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT--CEE--EES-CCGGGGGSCCCSEEEECTT
T ss_pred             CcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC--CEE--ECC-CCHHHcCCCCCCEEEECCC
Confidence            358999998 999996 8889999999  999999975322222333321  111  112 2333322 48999999988


Q ss_pred             CCCCCCCchh-hhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCC--CcHHHHHHHHHHhCCCCC
Q 024248          124 VPRKPGMTRD-DLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN--STVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       124 ~~~~~g~~r~-~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~--~~~~i~t~~~~~~sg~p~  185 (270)
                      .+..  .... ...+.+++++.++ +.+.+. ..+..+|-+|....  +++.++..++... |+++
T Consensus        76 i~~~--~p~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~-g~~~  137 (326)
T 3eag_A           76 AKRG--MDVVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA-GLAP  137 (326)
T ss_dssp             CCTT--CHHHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT-TCCC
T ss_pred             cCCC--CHHHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc-CCCc
Confidence            7642  1111 1112333333222 222221 23344555654433  2335666665543 4443

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.01  E-value=0.005  Score=60.24  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC---------CCCh--hHHHHhhccccCcceeeeeccCCHHHHh--
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV---------VNTP--GVTADISHMDTNAVVRGFLGQQQLEDAL--  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~---------~~~~--~~~~dl~~~~~~~~~~~i~~t~d~~~al--  112 (270)
                      .+.+.|+||+|.+|..+|..|+.+|.  .|++.|+         +...  ....++..... .....+....+.++.+  
T Consensus        19 gk~~lVTGas~GIG~aiA~~La~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~D~~d~~~~~~~~~~   95 (613)
T 3oml_A           19 GRVAVVTGAGAGLGREYALLFAERGA--KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG-EAVADYNSVIDGAKVIET   95 (613)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEC--------------CHHHHHHHHHHTTC-CEEECCCCGGGHHHHHC-
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcccccccCCHHHHHHHHHHHHHhCC-eEEEEeCCHHHHHHHHHH
Confidence            34688999999999999999999998  9999987         2221  11223322110 0001111112232333  


Q ss_pred             -----CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecC
Q 024248          113 -----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (270)
Q Consensus       113 -----~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sN  164 (270)
                           ...|++|..||......   .+   ....+..|+.....+++.+..+   ...+.||++|.
T Consensus        96 ~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS  161 (613)
T 3oml_A           96 AIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSS  161 (613)
T ss_dssp             ---------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             HHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence                 36799999999753221   12   2334567776665555555321   23466776664

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=97.01  E-value=0.00088  Score=61.16  Aligned_cols=95  Identities=18%  Similarity=0.240  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.||..+|..+...|+  +|+.+|+.....    ....     .   .. .++++.++.||+|+++..
T Consensus       146 l~gktvgIiGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~----~~~~-----~---~~-~~l~ell~~aDvV~l~~P  209 (343)
T 2yq5_A          146 IYNLTVGLIGV-GHIGSAVAEIFSAMGA--KVIAYDVAYNPE----FEPF-----L---TY-TDFDTVLKEADIVSLHTP  209 (343)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCGG----GTTT-----C---EE-CCHHHHHHHCSEEEECCC
T ss_pred             cCCCeEEEEec-CHHHHHHHHHHhhCCC--EEEEECCChhhh----hhcc-----c---cc-cCHHHHHhcCCEEEEcCC
Confidence            34569999997 9999999999999998  999999975421    1111     1   11 268889999999999874


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ...   .++ .++  |    .+.+   ....|++++|+++  .++|
T Consensus       210 lt~---~t~-~li--~----~~~l---~~mk~gailIN~aRg~~vd  242 (343)
T 2yq5_A          210 LFP---STE-NMI--G----EKQL---KEMKKSAYLINCARGELVD  242 (343)
T ss_dssp             CCT---TTT-TCB--C----HHHH---HHSCTTCEEEECSCGGGBC
T ss_pred             CCH---HHH-HHh--h----HHHH---hhCCCCcEEEECCCChhhh
Confidence            321   111 111  1    1223   3334789999987  3455

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.01  E-value=0.0014  Score=61.08  Aligned_cols=96  Identities=22%  Similarity=0.279  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|||. |.+|+.+|..+...|+  +|+.||+.....    +  .    ..   ....++++.++.||+|+++.
T Consensus       142 el~gktlGiIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~----~--~----~~---~~~~~l~ell~~aDvV~l~~  205 (404)
T 1sc6_A          142 EARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLP----L--G----NA---TQVQHLSDLLNMSDVVSLHV  205 (404)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCC----C--T----TC---EECSCHHHHHHHCSEEEECC
T ss_pred             ccCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEEcCCchhc----c--C----Cc---eecCCHHHHHhcCCEEEEcc
Confidence            345679999997 9999999999999998  999999864321    0  0    01   11246888899999999986


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ....   .++ .++  |    .+.+.   ...|++++|+++  .++|
T Consensus       206 P~t~---~t~-~li--~----~~~l~---~mk~ga~lIN~aRg~~vd  239 (404)
T 1sc6_A          206 PENP---STK-NMM--G----AKEIS---LMKPGSLLINASRGTVVD  239 (404)
T ss_dssp             CSST---TTT-TCB--C----HHHHH---HSCTTEEEEECSCSSSBC
T ss_pred             CCCh---HHH-HHh--h----HHHHh---hcCCCeEEEECCCChHHh
Confidence            3321   111 111  1    22233   334788999987  3455

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.00  E-value=0.0017  Score=57.02  Aligned_cols=70  Identities=13%  Similarity=0.226  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +.+||+|+|+ |.+|..++..|...|.  +|+++|++.+.  +.++....   ...   ..+++++.++++|+||.+...
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~--~~~l~~~~---g~~---~~~~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEK--AIKLAQKF---PLE---VVNSPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHH--HHHHTTTS---CEE---ECSCGGGTGGGCSEEEECSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHH--HHHHHHHc---CCe---eehhHHhhhcCCCEEEEeCCC
Confidence            4579999997 9999999999998887  99999987432  22333221   111   123667788999999999765


Q ss_pred             C
Q 024248          125 P  125 (270)
Q Consensus       125 ~  125 (270)
                      +
T Consensus       197 ~  197 (275)
T 2hk9_A          197 G  197 (275)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.00  E-value=0.00062  Score=64.52  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ++.|||.|+|+ |.+|+++|..|...|+  +|+++|.++.
T Consensus         1 ~~~M~iiI~G~-G~vG~~la~~L~~~~~--~v~vId~d~~   37 (461)
T 4g65_A            1 SNAMKIIILGA-GQVGGTLAENLVGENN--DITIVDKDGD   37 (461)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHTCSTTE--EEEEEESCHH
T ss_pred             CCcCEEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHH
Confidence            35799999998 9999999999999999  9999999854

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.98  E-value=0.0042  Score=53.91  Aligned_cols=149  Identities=17%  Similarity=0.178  Sum_probs=87.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH----------HHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----------ADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~----------~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      .+.+.|+||++-+|..++..|++.|.  +|++.|++++....          .|+.+.+   .+      ...-+.+..-
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~---~v------~~~~~~~g~i   79 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADGVHAPRHPRIRREELDITDSQ---RL------QRLFEALPRL   79 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTSTTSCCCTTEEEEECCTTCHH---HH------HHHHHHCSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHhhhhcCCeEEEEecCCCHH---HH------HHHHHhcCCC
Confidence            34789999999999999999999999  99999998642110          1111110   00      0122346789


Q ss_pred             CEEEEcCCCCCCCC-Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          116 DIVIIPAGVPRKPG-MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       116 DvVIi~ag~~~~~g-~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      |++|..||...... .+   ....+..|+...    +...+.+++.  .+.||++|.-...            .+.|..-
T Consensus        80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~~------------~~~~~~~  145 (242)
T 4b79_A           80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIASMYST------------FGSADRP  145 (242)
T ss_dssp             SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECCGGGT------------SCCSSCH
T ss_pred             CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEeecccc------------CCCCCCH
Confidence            99999999753211 11   223455565444    4444545432  4777777643221            1233222


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .|+.++-.-..|-+.+|.+++  |..|++..+-.
T Consensus       146 ~Y~asKaav~~ltr~lA~Ela--~~gIrVNaV~P  177 (242)
T 4b79_A          146 AYSASKGAIVQLTRSLACEYA--AERIRVNAIAP  177 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--hcCeEEEEEEe
Confidence            344444444456778888874  55676665553

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.96  E-value=0.0036  Score=59.69  Aligned_cols=67  Identities=15%  Similarity=0.154  Sum_probs=44.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC------CCccEEEEEeCCCCh--hHHHHhhccccCcceeeeeccCCHHHHhCCCCEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN------PLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~------g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvV  118 (270)
                      +||+|||. |.+|.+++..|...      |+  +|++.++....  ..+.+.  ......    ....+.++++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~--G~~v~d----~ta~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAA--GFTEES----GTLGDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHT--TCCTTT----TCEEEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHC--CCEEec----CCCCCHHHHHhcCCEE
Confidence            69999997 99999999999988      88  77765554322  122111  100000    0013577899999999


Q ss_pred             EEcC
Q 024248          119 IIPA  122 (270)
Q Consensus       119 Ii~a  122 (270)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9986

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.96  E-value=0.0087  Score=52.22  Aligned_cols=159  Identities=13%  Similarity=0.096  Sum_probs=90.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCCH-------HHHhCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQL-------EDALTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d~-------~~al~~A  115 (270)
                      +.+.|+||++-+|..++..|++.|.  .|++.|++++..  .+.++........ +. .+....+.       .+.+-.-
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            3678889999999999999999998  999999976421  1223332210000 00 01111111       1224568


Q ss_pred             CEEEEcCCCCCCCCC---c---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          116 DIVIIPAGVPRKPGM---T---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       116 DvVIi~ag~~~~~g~---~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |++|..||.......   +   ....+..|+..    .+.+++.+.+....+.||++|.-...            .+.|.
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~------------~~~~~  155 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQ------------AARPT  155 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT------------SBCTT
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhc------------CCCCC
Confidence            999999987542221   1   22345566554    45566666555556778887643321            12332


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .-.++.++-.-..|-+.+|.+++  +..|++..+-.
T Consensus       156 ~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V~P  189 (255)
T 4g81_D          156 VAPYTAAKGGIKMLTCSMAAEWA--QFNIQTNAIGP  189 (255)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEee
Confidence            22344544444457788888875  55666655553

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.95  E-value=0.0018  Score=58.47  Aligned_cols=68  Identities=18%  Similarity=0.185  Sum_probs=50.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC-CCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~-~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ....++|+|||. |.+|..++..+...|+  +|+.+|+ +.......++.   .       ....++++.+++||+|+++
T Consensus       143 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g---~-------~~~~~l~ell~~aDvVil~  209 (320)
T 1gdh_A          143 KLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ---A-------TFHDSLDSLLSVSQFFSLN  209 (320)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT---C-------EECSSHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhcC---c-------EEcCCHHHHHhhCCEEEEe
Confidence            345679999998 9999999999998888  9999999 76432221111   0       1123677889999999998


Q ss_pred             CC
Q 024248          122 AG  123 (270)
Q Consensus       122 ag  123 (270)
                      ..
T Consensus       210 ~p  211 (320)
T 1gdh_A          210 AP  211 (320)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.94  E-value=0.0006  Score=61.86  Aligned_cols=95  Identities=21%  Similarity=0.212  Sum_probs=62.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|||. |.+|..+|..+...|+  +|+.+|+..... .   ..   .  ..    ..++++.++.||+|+++..
T Consensus       144 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~---~~---~--~~----~~~l~ell~~aDvV~~~~p  207 (331)
T 1xdw_A          144 VRNCTVGVVGL-GRIGRVAAQIFHGMGA--TVIGEDVFEIKG-I---ED---Y--CT----QVSLDEVLEKSDIITIHAP  207 (331)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCS-C---TT---T--CE----ECCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCccHH-H---Hh---c--cc----cCCHHHHHhhCCEEEEecC
Confidence            44569999998 9999999999998898  999999875422 1   11   0  11    1267788999999999864


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ...   .++ .++  |    .+.++.   ..|++++|+++  .++|
T Consensus       208 ~t~---~t~-~li--~----~~~l~~---mk~ga~lin~srg~~vd  240 (331)
T 1xdw_A          208 YIK---ENG-AVV--T----RDFLKK---MKDGAILVNCARGQLVD  240 (331)
T ss_dssp             CCT---TTC-CSB--C----HHHHHT---SCTTEEEEECSCGGGBC
T ss_pred             Cch---HHH-HHh--C----HHHHhh---CCCCcEEEECCCccccc
Confidence            321   111 111  1    122222   34788999887  3455

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.93  E-value=0.0054  Score=54.59  Aligned_cols=76  Identities=18%  Similarity=0.197  Sum_probs=45.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEE-EEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~-LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +++||+|+|++|.+|..++..+...+-. +|+ .+|++.....-.|+......... .+..++|+++.+.++|+||-..
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~-eLvg~vd~~~~~~~G~d~gel~G~~~~-gv~v~~dl~~ll~~aDVvIDFT   96 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDV-ELCAVLVRKGSSFVDKDASILIGSDFL-GVRITDDPESAFSNTEGILDFS   96 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSE-EEEEEBCCTTCTTTTSBGGGGTTCSCC-SCBCBSCHHHHTTSCSEEEECS
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCccccccchHHhhccCcC-CceeeCCHHHHhcCCCEEEEcC
Confidence            3569999998899999999988765433 544 55775321111122111000011 1233568888889999998653

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.93  E-value=0.017  Score=50.29  Aligned_cols=158  Identities=13%  Similarity=0.154  Sum_probs=89.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcc-ee-eeeccCC-------HHHHhCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAV-VR-GFLGQQQ-------LEDALTGM  115 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~-~~-~i~~t~d-------~~~al~~A  115 (270)
                      +.+.|+||++-+|..+|..|+..|.  .|+++|++++..  .+.++........ +. .+....+       ..+.+-.-
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            3688899999999999999999998  999999986422  2233332211000 00 0111111       12335678


Q ss_pred             CEEEEcCCCCCCCC----Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          116 DIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       116 DvVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      |++|..||.....+    .+   ....+..|+..    .+.+++.+.+.. .+.||++|.-...            .+.|
T Consensus        86 DiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~------------~~~~  152 (254)
T 4fn4_A           86 DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGI------------RGGF  152 (254)
T ss_dssp             CEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------CSSS
T ss_pred             CEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhc------------CCCC
Confidence            99999998643211    11   22345566544    456666666543 5677777643221            1233


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      ..-.++.++-.-..|-+.+|.+++  +..|++..+-.
T Consensus       153 ~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V~P  187 (254)
T 4fn4_A          153 AGAPYTVAKHGLIGLTRSIAAHYG--DQGIRAVAVLP  187 (254)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEEEe
Confidence            222344544444557778888874  55676666653

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=96.92  E-value=0.0028  Score=57.55  Aligned_cols=92  Identities=17%  Similarity=0.238  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|. |.+|..++..+...|.  +|..||+......    ....  .     . ..++++.++.||+|++.+.
T Consensus       139 l~g~tvGIiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~----~~~~--~-----~-~~~l~ell~~sDivslh~P  203 (334)
T 3kb6_A          139 LNRLTLGVIGT-GRIGSRVAMYGLAFGM--KVLCYDVVKREDL----KEKG--C-----V-YTSLDELLKESDVISLHVP  203 (334)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHH----HHTT--C-----E-ECCHHHHHHHCSEEEECCC
T ss_pred             ecCcEEEEECc-chHHHHHHHhhcccCc--eeeecCCccchhh----hhcC--c-----e-ecCHHHHHhhCCEEEEcCC
Confidence            34568999997 9999999999999999  9999998643211    1110  0     0 1367888999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ...   +++ .++  |    ++.+..+   -|++++||++
T Consensus       204 lt~---~T~-~li--~----~~~l~~m---k~~a~lIN~a  230 (334)
T 3kb6_A          204 YTK---ETH-HMI--N----EERISLM---KDGVYLINTA  230 (334)
T ss_dssp             CCT---TTT-TCB--C----HHHHHHS---CTTEEEEECS
T ss_pred             CCh---hhc-cCc--C----HHHHhhc---CCCeEEEecC
Confidence            221   111 111  2    2233333   3788999997

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.91  E-value=0.0031  Score=59.49  Aligned_cols=91  Identities=20%  Similarity=0.180  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|. |.||..+|..+...|.  +|+.+|+++...... ..+.     ..    ..+++++++.||+|+.+.|
T Consensus       245 L~GKTVgVIG~-G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A-~~~G-----~~----vv~LeElL~~ADIVv~atg  311 (464)
T 3n58_A          245 MAGKVAVVCGY-GDVGKGSAQSLAGAGA--RVKVTEVDPICALQA-AMDG-----FE----VVTLDDAASTADIVVTTTG  311 (464)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHH-HHTT-----CE----ECCHHHHGGGCSEEEECCS
T ss_pred             ccCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEeCCcchhhHH-HhcC-----ce----eccHHHHHhhCCEEEECCC
Confidence            44568999998 9999999999998898  999999875321111 1111     01    1257889999999998765


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      ..   +.     +  |    .+.++.+   .|++++++++.
T Consensus       312 t~---~l-----I--~----~e~l~~M---K~GAILINvGR  335 (464)
T 3n58_A          312 NK---DV-----I--T----IDHMRKM---KDMCIVGNIGH  335 (464)
T ss_dssp             SS---SS-----B--C----HHHHHHS---CTTEEEEECSS
T ss_pred             Cc---cc-----c--C----HHHHhcC---CCCeEEEEcCC
Confidence            32   11     0  1    2233333   37889998874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.91  E-value=0.0012  Score=56.08  Aligned_cols=96  Identities=17%  Similarity=0.076  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeec-cCC---HHHH-hCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-LTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~-t~d---~~~a-l~~ADvVIi  120 (270)
                      .++|.|+|+ |.+|..++..|...|+   |+++|.++....  .+. ..    +..+.+ .++   ++++ +.+||.||+
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~---v~vid~~~~~~~--~~~-~~----~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRKK--VLR-SG----ANFVHGDPTRVSDLEKANVRGARAVIV   77 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE---EEEESCGGGHHH--HHH-TT----CEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe---EEEEECCHHHHH--HHh-cC----CeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence            458999998 9999999999987764   889998754322  222 11    111111 122   3344 789999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCE-EEEecCCCC
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVN  167 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~-viv~sNPv~  167 (270)
                      +.+.         +  ..|.    .++..+++.+|+.. +.-+.+|.+
T Consensus        78 ~~~~---------d--~~n~----~~~~~a~~~~~~~~iia~~~~~~~  110 (234)
T 2aef_A           78 DLES---------D--SETI----HCILGIRKIDESVRIIAEAERYEN  110 (234)
T ss_dssp             CCSC---------H--HHHH----HHHHHHHHHCSSSEEEEECSSGGG
T ss_pred             cCCC---------c--HHHH----HHHHHHHHHCCCCeEEEEECCHhH
Confidence            8531         1  2343    34555666778754 444566765

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.90  E-value=0.0014  Score=60.14  Aligned_cols=77  Identities=16%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcce-eeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV-RGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~-~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ++++||+|+||+|++|..++..|..++.+ ||+.+......+...+-.+......+ ..+... + ++.+.++|+||++.
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~~vDvVf~at   90 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFSTVDAVFCCL   90 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGGGCSEEEECC
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhcCCCEEEEcC
Confidence            34579999999999999999999887654 66666443322222221111100000 011111 2 34456899999987


Q ss_pred             C
Q 024248          123 G  123 (270)
Q Consensus       123 g  123 (270)
                      +
T Consensus        91 p   91 (359)
T 1xyg_A           91 P   91 (359)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.87  E-value=0.0037  Score=59.75  Aligned_cols=90  Identities=19%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|+|. |.||..+|..+...|.  +|+.+|++....  .+....    ...    ..+++++++.||+|+.+.+
T Consensus       275 L~GktVgIIG~-G~IG~~vA~~l~~~G~--~V~v~d~~~~~~--~~a~~~----G~~----~~~l~ell~~aDiVi~~~~  341 (494)
T 3d64_A          275 IAGKIAVVAGY-GDVGKGCAQSLRGLGA--TVWVTEIDPICA--LQAAME----GYR----VVTMEYAADKADIFVTATG  341 (494)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSCHHHH--HHHHTT----TCE----ECCHHHHTTTCSEEEECSS
T ss_pred             cCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCChHhH--HHHHHc----CCE----eCCHHHHHhcCCEEEECCC
Confidence            45679999998 9999999999998888  999999974321  111111    011    1268899999999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ..   +     ++  |    .+.++.+   .|++++++++
T Consensus       342 t~---~-----lI--~----~~~l~~M---K~gAilINvg  364 (494)
T 3d64_A          342 NY---H-----VI--N----HDHMKAM---RHNAIVCNIG  364 (494)
T ss_dssp             SS---C-----SB--C----HHHHHHC---CTTEEEEECS
T ss_pred             cc---c-----cc--C----HHHHhhC---CCCcEEEEcC
Confidence            22   1     11  1    2233333   4788999887

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.86  E-value=0.0027  Score=54.33  Aligned_cols=57  Identities=25%  Similarity=0.375  Sum_probs=43.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEE-EEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh-CCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV-~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al-~~ADvVIi~ag  123 (270)
                      |||+|||+ |.+|..++..+...++  +| .++|+++. ..  +              ..+|+++.+ .++|+||++..
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~~-~~--~--------------~~~~~~~l~~~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRGE-HE--K--------------MVRGIDEFLQREMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC-CT--T--------------EESSHHHHTTSCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCcc-hh--h--------------hcCCHHHHhcCCCCEEEECCC
Confidence            69999998 9999999988887787  77 68888642 10  0              124677777 68999999863

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.85  E-value=0.0052  Score=55.88  Aligned_cols=98  Identities=15%  Similarity=0.290  Sum_probs=55.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC---ChhHH-HHhhc-cccCcceeeeeccCCHHHHh-CCCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVT-ADISH-MDTNAVVRGFLGQQQLEDAL-TGMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~---~~~~~-~dl~~-~~~~~~~~~i~~t~d~~~al-~~ADvVIi  120 (270)
                      +||+|+||+|++|..+...|...+.+ ++..+....   ..|+. .+... ......+. +....+. +.+ +++|+||+
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~-v~~~~~~-~~~~~~~Dvvf~   81 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGIVELP-LQPMSDI-SEFSPGVDVVFL   81 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTTCCCB-EEEESSG-GGTCTTCSEEEE
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCcccee-EeccCCH-HHHhcCCCEEEE
Confidence            49999999999999999988886554 777665543   33322 22110 00000111 1111033 345 89999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP  165 (270)
                      +.+.                ...+++++.+.+  ..+.+|-.|.+
T Consensus        82 a~p~----------------~~s~~~~~~~~~--~g~~vIDlSa~  108 (337)
T 3dr3_A           82 ATAH----------------EVSHDLAPQFLE--AGCVVFDLSGA  108 (337)
T ss_dssp             CSCH----------------HHHHHHHHHHHH--TTCEEEECSST
T ss_pred             CCCh----------------HHHHHHHHHHHH--CCCEEEEcCCc
Confidence            8631                122455555543  24566666655

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.84  E-value=0.0028  Score=56.33  Aligned_cols=98  Identities=22%  Similarity=0.275  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ..+.++|+|+|+ |.+|..++..+...|.  +|+.+|++....  ..+....  .  ..+ ...++++.+++||+||.+.
T Consensus       154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~d~~~~~~--~~~~~~g--~--~~~-~~~~l~~~l~~aDvVi~~~  223 (300)
T 2rir_A          154 TIHGSQVAVLGL-GRTGMTIARTFAALGA--NVKVGARSSAHL--ARITEMG--L--VPF-HTDELKEHVKDIDICINTI  223 (300)
T ss_dssp             CSTTSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHTT--C--EEE-EGGGHHHHSTTCSEEEECC
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCC--C--eEE-chhhHHHHhhCCCEEEECC
Confidence            455679999998 9999999999999998  999999864321  1111111  1  111 1236778899999999987


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNS  168 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~  168 (270)
                      ...    .     +  |.    +   .+....|.+++++++ +|.+.
T Consensus       224 p~~----~-----i--~~----~---~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          224 PSM----I-----L--NQ----T---VLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             SSC----C-----B--CH----H---HHTTSCTTCEEEECSSTTCSB
T ss_pred             Chh----h-----h--CH----H---HHHhCCCCCEEEEEeCCCCCc
Confidence            531    1     1  11    1   223334788888887 66654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.83  E-value=0.0011  Score=62.56  Aligned_cols=73  Identities=14%  Similarity=0.083  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhCCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADvVIi~  121 (270)
                      .++|+|+|+ |++|..++..|+..|.  +|+++|++...  ..++....  .....    +....+++++++++|+||++
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~~--a~~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLES--AKKLSAGV--QHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHHH--HHHTTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHHH--HHHHHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            358999995 9999999999998887  89999997432  22222210  11111    11112355678899999999


Q ss_pred             CCCC
Q 024248          122 AGVP  125 (270)
Q Consensus       122 ag~~  125 (270)
                      ++..
T Consensus        76 a~~~   79 (450)
T 1ff9_A           76 IPYT   79 (450)
T ss_dssp             CC--
T ss_pred             Cccc
Confidence            8653

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.82  E-value=0.0049  Score=48.73  Aligned_cols=83  Identities=8%  Similarity=0.038  Sum_probs=52.6

Q ss_pred             CCeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~---G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.+|+|||++   |.+|..++..|...|+  +|+-+|....  ..   .-         .....++++..+.+|+++++.
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~V~~vnp~~~--~i---~G---------~~~~~s~~el~~~vDlvii~v   77 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD--EI---EG---------LKCYRSVRELPKDVDVIVFVV   77 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--EE---TT---------EECBSSGGGSCTTCCEEEECS
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCC--EEEEeCCCCC--eE---CC---------eeecCCHHHhCCCCCEEEEEe
Confidence            5699999975   8999999999999998  7655554321  11   10         111235555556899999985


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEE
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~vi  160 (270)
                      .                .+.+.++++.+.+....++++
T Consensus        78 p----------------~~~v~~v~~~~~~~g~~~i~~   99 (138)
T 1y81_A           78 P----------------PKVGLQVAKEAVEAGFKKLWF   99 (138)
T ss_dssp             C----------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred             C----------------HHHHHHHHHHHHHcCCCEEEE
Confidence            2                123355555555555665443

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.82  E-value=0.00059  Score=60.29  Aligned_cols=75  Identities=19%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh-CCCccEEE-EEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~-~g~~~eV~-LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ++|||+|+|++|.+|..++..+.. .++  +|+ ++|++.......|+......... .+..++|+++.++++|+||..+
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~--elva~~d~~~~~~~g~d~~~~~g~~~~-~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGV--QLGAALEREGSSLLGSDAGELAGAGKT-GVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE--ECCCEECCTTCTTCSCCTTCSSSSSCC-SCCEESCSTTTTTSCSEEEECS
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCchhhhhhhHHHHcCCCcC-CceecCCHHHHhcCCCEEEEcC
Confidence            468999999889999999987764 455  666 77876432111122111000000 0112456777788999999443

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.81  E-value=0.0059  Score=53.34  Aligned_cols=153  Identities=12%  Similarity=0.127  Sum_probs=88.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH------HHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT------ADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~------~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      +.+.|+||++-+|..++..|++.|.  .|++.|+++.++..      .|+.+.+.   +..+  .....+.+-.-|++|.
T Consensus        12 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~Dv~~~~~---v~~~--~~~~~~~~G~iDilVn   84 (261)
T 4h15_A           12 KRALITAGTKGAGAATVSLFLELGA--QVLTTARARPEGLPEELFVEADLTTKEG---CAIV--AEATRQRLGGVDVIVH   84 (261)
T ss_dssp             CEEEESCCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTSCTTTEEECCTTSHHH---HHHH--HHHHHHHTSSCSEEEE
T ss_pred             CEEEEeccCcHHHHHHHHHHHHcCC--EEEEEECCchhCCCcEEEEEcCCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            4688999999999999999999999  99999997643211      12222210   0000  0112344667899999


Q ss_pred             cCCCCCCC-C----Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          121 PAGVPRKP-G----MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       121 ~ag~~~~~-g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      .||..... +    .+   ....+..|+..    .+.+++.+.+. ..+.||+++.....            .+.|....
T Consensus        85 nAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Iv~isS~~~~------------~~~~~~~~  151 (261)
T 4h15_A           85 MLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVAR-GSGVVVHVTSIQRV------------LPLPESTT  151 (261)
T ss_dssp             CCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SCCTTTCH
T ss_pred             CCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhc-CCceEEEEEehhhc------------cCCCCccH
Confidence            99864321 1    11   12345566544    45666666554 35667776643221            12232222


Q ss_pred             -eeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          189 -LGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       189 -iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                       ++.++-.-..|-+.+|.+++  +..|++..+-.
T Consensus       152 ~Y~asKaal~~lt~~lA~Ela--~~gIrVN~V~P  183 (261)
T 4h15_A          152 AYAAAKAALSTYSKAMSKEVS--PKGVRVVRVSP  183 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--hhCeEEEEEeC
Confidence             34444444456777888874  45566655553

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=96.81  E-value=0.0014  Score=60.69  Aligned_cols=96  Identities=17%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      ..++|+|||. |.||..+|..+...|+  +|..+|+...   ..+  ..         ....++++.++.||+|+++...
T Consensus       118 ~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~---~~~--~~---------~~~~sl~ell~~aDiV~l~~Pl  180 (381)
T 3oet_A          118 RDRTIGIVGV-GNVGSRLQTRLEALGI--RTLLCDPPRA---ARG--DE---------GDFRTLDELVQEADVLTFHTPL  180 (381)
T ss_dssp             GGCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECHHHH---HTT--CC---------SCBCCHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCChH---Hhc--cC---------cccCCHHHHHhhCCEEEEcCcC
Confidence            3468999997 9999999999999999  9999997321   111  11         0123688899999999998743


Q ss_pred             CCCCC-CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec--CCCC
Q 024248          125 PRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (270)
Q Consensus       125 ~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s--NPv~  167 (270)
                      ..... .++ .++  |    .+.+   ....|++++|+++  .++|
T Consensus       181 t~~g~~~T~-~li--~----~~~l---~~mk~gailIN~aRG~vvd  216 (381)
T 3oet_A          181 YKDGPYKTL-HLA--D----ETLI---RRLKPGAILINACRGPVVD  216 (381)
T ss_dssp             CCSSTTCCT-TSB--C----HHHH---HHSCTTEEEEECSCGGGBC
T ss_pred             Cccccccch-hhc--C----HHHH---hcCCCCcEEEECCCCcccC
Confidence            32100 011 111  1    1222   3334788888886  3455

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.80  E-value=0.0023  Score=58.60  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      -.||+|+||+|++|..+..+|...+.+ ||+++......|+..+-.+......+. +. ..+.++...++|+||++.+
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~-el~~l~S~~~aG~~~~~~~p~~~~~l~-~~-~~~~~~~~~~~Dvvf~alp   87 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSI-LS-EFDPEKVSKNCDVLFTALP   87 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCB-CB-CCCHHHHHHHCSEEEECCS
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEeCcccccCChHHhChhhccCce-EE-eCCHHHhhcCCCEEEECCC
Confidence            349999999999999999999988765 888887654344322211110001111 11 1244343478999999875

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.77  E-value=0.0027  Score=60.45  Aligned_cols=91  Identities=18%  Similarity=0.119  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ....++|+|+|. |.||..+|..+...|.  +|+.+|++....  .+.....    ..    ..+++++++.||+|+.+.
T Consensus       254 ~l~GktVgIIG~-G~IG~~vA~~l~~~G~--~Viv~d~~~~~~--~~a~~~g----~~----~~~l~ell~~aDiVi~~~  320 (479)
T 1v8b_A          254 LISGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICA--IQAVMEG----FN----VVTLDEIVDKGDFFITCT  320 (479)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHH--HHHHTTT----CE----ECCHHHHTTTCSEEEECC
T ss_pred             ccCCCEEEEEee-CHHHHHHHHHHHhCcC--EEEEEeCChhhH--HHHHHcC----CE----ecCHHHHHhcCCEEEECC
Confidence            345679999997 9999999999988888  999999874322  1111110    11    136889999999999985


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +..   +     ++  |    .+.   +....|++++++++
T Consensus       321 ~t~---~-----lI--~----~~~---l~~MK~gailiNvg  344 (479)
T 1v8b_A          321 GNV---D-----VI--K----LEH---LLKMKNNAVVGNIG  344 (479)
T ss_dssp             SSS---S-----SB--C----HHH---HTTCCTTCEEEECS
T ss_pred             Chh---h-----hc--C----HHH---HhhcCCCcEEEEeC
Confidence            322   1     11  1    122   22334788999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	1e-44
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	2e-36
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	5e-33
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	3e-30
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	3e-30
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	9e-30
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	1e-29
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	2e-29
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	2e-29
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	3e-29
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	5e-29
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	2e-28
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	1e-27
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	3e-26
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	2e-25
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	2e-25
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	3e-25
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	9e-25
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	3e-23
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	4e-23
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	1e-19
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	3e-18
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	1e-17
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	4e-16
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	8e-16
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	8e-15
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	9e-14
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	1e-12
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	2e-11
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	4e-11
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	1e-10
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	2e-10
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	2e-10
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	2e-10
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	2e-10
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	3e-10
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	5e-10
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	6e-10
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	6e-10
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	8e-10
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-09
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	2e-09
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	8e-09
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	1e-07
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	6e-07
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	9e-07

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  145 bits (367), Expect = 1e-44
 Identities = 93/143 (65%), Positives = 116/143 (81%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
           ST+PI AEVFKK G Y+P ++ G
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (313), Expect = 2e-36
 Identities = 83/145 (57%), Positives = 101/145 (69%), Gaps = 3/145 (2%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                   G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DATPAL-EGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           VN+TV IAAEV KK G YD  +L G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  116 bits (292), Expect = 5e-33
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTNA---VV 99
            +AV GAAG I   L   +    +        L L     +      ++    ++   ++
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AI 158
           R         +    +D  ++    PR PGM R  L +IN  I     + +     K   
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 159 VNLISNPVNSTVPIAAE 175
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  108 bits (271), Expect = 3e-30
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+AV+GA G +G  LA       +   + L D+          D+ H  +        G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              E      D+V+I AG  +KPG +R +L      I+K +   + K  P AI  LI+NP
Sbjct: 62  DDPEIC-RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    IA  V +K+      ++ G
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  108 bits (271), Expect = 3e-30
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 12/149 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVS--------VLHLYDVVNTPGVTADISHMDTNAVV 99
           +VAV GAAG IG  L   +    ++         +L +   +                ++
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AI 158
            G       + A    D  ++    PRK GM R DL  +N  I       +A+   K   
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           V ++ NP N+   IA   +K     +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  107 bits (268), Expect = 9e-30
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+GA G +G   A  +    L   L L DVV     G   D+       +    +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV 191
           ++    +A            +R++G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  106 bits (266), Expect = 1e-29
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+  +GA G +G   A    +N  V  + L D+      G   D++H          +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                 L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV 191
           ++    I      K        + G+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (265), Expect = 2e-29
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           K+ ++G  G +G   A  + +      + L DV         +  +      R       
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
               L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               +    F K    DP+++ G
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  106 bits (265), Expect = 2e-29
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVA++GA G +G   A  M +    + L L DV     +   +        +        
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
               +   D++++ AG  RKPG TR DL   N  I K + + I K     ++ ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               +     +K       +++G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  106 bits (265), Expect = 3e-29
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 48  KVAVLGAAGGIGQPLAML-----MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV--- 99
           +V V GAAG I   L        +       +L L D+    GV   +     +  +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
           +  +   + E A   +D+ I+   +PR+ GM R DL   N  I K     + K   K++ 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 160 NL-ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
            + + NP N+    A++    +     +    +
Sbjct: 125 VIVVGNPANTNCLTASKSAPSI---PKENFSCL 154

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  105 bits (263), Expect = 5e-29
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFL 103
           KV+V+GAAG +G      + +  +   +   D+ +    T G  AD +H    A      
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIAYDSNTR 59

Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
            +Q   +   G D+V+I AG+PR+PG TR DL   NA I++ +   + +     I    S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           NPV+    +      + G    ++++G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  103 bits (259), Expect = 2e-28
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQ 106
           K++++GA G +G   A  +    L  ++ L  V   P G   D+            +   
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
                    D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLG 190
           ++   +AAEV      +  +R++G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  102 bits (254), Expect = 1e-27
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGF 102
           +P  K+ ++G+ G IG  +A L+    L  V+    V N P G   D SH +  A     
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKA 157
           +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP A
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
            + +++NPV+  V +      +       +++G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 98.2 bits (244), Expect = 3e-26
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KV ++G  G +G   A  M    +     + DVV        +   D  A          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
                   D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               I      K   +  +R++G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 96.3 bits (239), Expect = 2e-25
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 46  GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTNAVVRGFL 103
           G +V V+GA G +G      +    +   + L D   +  +    D +H    A     +
Sbjct: 6   GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI 64

Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
                +D     D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +
Sbjct: 65  WHGDYDD-CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           NPV+    I      K      +R++G
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIG 146

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.2 bits (239), Expect = 2e-25
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ V+G  G +G   A+ + +  L   L L D       G   D+ H          +  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFG 79

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +          +VII AG     G TR DL   N  I+K +  G+ +  P   + +++NP
Sbjct: 80  KDYNV-SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    +      K+  +   R++G
Sbjct: 139 VDILTYVVW----KISGFPVGRVIG 159

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 96.3 bits (239), Expect = 3e-25
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF 102
           P  K+ V+G  G +G   A+ +    L   L L DV+     G   D+ H          
Sbjct: 19  PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKI 77

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           +  +          IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++
Sbjct: 78  VADKDYSVT-ANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVV 136

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           SNPV+    +      K+      R++G
Sbjct: 137 SNPVDILTYVT----WKLSGLPKHRVIG 160

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 94.8 bits (235), Expect = 9e-25
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTNAVVRGFLGQQ 106
           KVA++G+ G IG  +  L  +  L  V+    V   P   A D+SH+ +       +  +
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 107 -QLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
              E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK  + 
Sbjct: 68  YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           +++NP++  V +  E            + G
Sbjct: 128 VVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 90.2 bits (223), Expect = 3e-23
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 12/149 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G  +A  +    +       D           D      N    G +  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 106 QQLEDALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L   D+VI   G  +     P   R       + +V+++   + +     ++ +
Sbjct: 62  NDWAA-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           ISNPV+    +   +F+ V  +   +++G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 90.2 bits (223), Expect = 4e-23
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTNAVVRGFL--- 103
           KV ++GA+G +G   A+L+   P +  L L     +   +      +             
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 104 --GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           I+NPV+     A         ++  ++ G
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 81.7 bits (201), Expect = 1e-19
 Identities = 44/78 (56%), Positives = 52/78 (66%)

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTD 250
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P       ++  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 251 RIQNGGTEVVEVIRGNWS 268
           RIQ  GTEVV+   G  S
Sbjct: 61  RIQEAGTEVVKAKAGAGS 78

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 77.8 bits (191), Expect = 3e-18
 Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 32/167 (19%)

Query: 48  KVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGF 102
           ++AV+G  G    P  +   +    +  +  +  YD+      +  D          +  
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA----------- 151
           +     E A+     VI         G   D+   +  G++     G+            
Sbjct: 61  ISDT-FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 152 --------KCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                   +    A +   +NP         E  +     + ++ +G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 75.9 bits (186), Expect = 1e-17
 Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTD 250
           VT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV      T  E+  LT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS-FTEQEVADLTK 59

Query: 251 RIQNGGTEVVEVIRG 265
           RIQN GTEVVE   G
Sbjct: 60  RIQNAGTEVVEAKAG 74

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 72.0 bits (176), Expect = 4e-16
 Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 36/172 (20%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP--GVTADISH---MDTNAV 98
           K+A +G  G    P  +   I       V  L L D+                 ++   V
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI-------- 150
                       AL G D V     V       +D+   +  G++     G         
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 151 ------------AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                        + CP A +   +NP      +  E   +      ++++G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLRY--TKQEKVVG 167

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 70.8 bits (173), Expect = 8e-16
 Identities = 29/161 (18%), Positives = 45/161 (27%), Gaps = 30/161 (18%)

Query: 47  FKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTNAV 98
           F + + G  G    P   L +L  +    +  L LYD      +      D+      A 
Sbjct: 4   FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI-REKAP 61

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA------- 151
              F      E+A T +D V+    V +      D+   +  G+V     G         
Sbjct: 62  DIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 152 -------------KCCPKAIVNLISNPVNSTVPIAAEVFKK 179
                        K  P A +   SNP          +   
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN 162

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.3 bits (166), Expect = 8e-15
 Identities = 27/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)

Query: 45  PGFKVAVLGAAGGIGQPLAM---LMKINPL-VSVLHLYDVV--NTPGVTADISHM-DTNA 97
           P  K+ ++GA G     L +   L K   L  S + L D+       +        +   
Sbjct: 1   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 59

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI------------------- 138
               F     L+D +   D VI  A V     + +                         
Sbjct: 60  ADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDY 119

Query: 139 -------NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK 178
                         +   I K  PKA     +NP+     +      
Sbjct: 120 YTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 65.1 bits (158), Expect = 9e-14
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ----VKPSCSLTPTEIDYL 248
           +LD  R  +F+A  LG+  ++++  V+GGH    +  +       +  S  L    ID L
Sbjct: 3   VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKL 62

Query: 249 TDRIQNGGTEVVEVIRGNWS 268
            +R +NGG E+VE ++   +
Sbjct: 63  VERTRNGGAEIVEHLKQGSA 82

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 62.4 bits (151), Expect = 1e-12
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL----TPTEIDYL 248
           +LD  R  TF+A   G+  ++V   ++GGH    +            +     P  +  +
Sbjct: 3   VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQI 62

Query: 249 TDRIQNGGTEVVEVIRGNW 267
            +R + GG E+V +++   
Sbjct: 63  VERTRKGGGEIVNLLKTGS 81

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 14/74 (18%), Positives = 26/74 (35%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LD  RA   +A  LG+   +V   ++ G+   T  P ++  K         +      
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 252 IQNGGTEVVEVIRG 265
                 E +  ++ 
Sbjct: 61  DSWLKGEFITTVQQ 74

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.9 bits (139), Expect = 4e-11
 Identities = 14/76 (18%), Positives = 25/76 (32%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
             LD  R    + E LG++P      V+G H   ++           +L        TD+
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 252 IQNGGTEVVEVIRGNW 267
            +     V + +    
Sbjct: 63  NKQHWKNVHKQVVEGG 78

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 13/74 (17%), Positives = 30/74 (40%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T+LD +R    ++E LG+D + V   ++G H    +           ++     D   + 
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 252 IQNGGTEVVEVIRG 265
            +    ++ E ++ 
Sbjct: 61  TEEDKKKIAEDVKT 74

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LD  R    +AE++ +D R V   ++G H G T  P+ S            +    + 
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEI 59

Query: 252 IQNGGTEVVEVIRGNWSDL 270
            ++   ++ E +R    ++
Sbjct: 60  KEDKLVKMFEDVRDAAYEI 78

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT 241
           T LD  R    +A+  G++ + V   + G H    +    S       ++
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMS 50

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 9/47 (19%), Positives = 16/47 (34%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC 238
           T+LD  R    + E   + P+ V   ++G H    +           
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVM 47

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 12/51 (23%), Positives = 15/51 (29%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
             LD  R    + E LG+        V+G H              S  L P
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHP 53

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.6 bits (133), Expect = 3e-10
 Identities = 16/76 (21%), Positives = 25/76 (32%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T+LD  R  T +A+  G  PR V V V+G H    +      +     L           
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 252 IQNGGTEVVEVIRGNW 267
            +       +  R  +
Sbjct: 62  SKILENFAEKTKRAAY 77

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 5e-10
 Identities = 16/76 (21%), Positives = 27/76 (35%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
             LD  R    +AE LG+ P      ++G H   ++           SL     +  TD 
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDN 62

Query: 252 IQNGGTEVVEVIRGNW 267
                 EV +++  + 
Sbjct: 63  DSENWKEVHKMVVESA 78

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 54.8 bits (131), Expect = 6e-10
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPS 237
           T LD  R    + +   +DPR VD  ++G H G +     S     
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIG 45

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 54.9 bits (131), Expect = 6e-10
 Identities = 16/75 (21%), Positives = 26/75 (34%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRI 252
           MLD  R   +VA+ L + PR+V   V+G H    +  +         +     D +    
Sbjct: 3   MLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 253 QNGGTEVVEVIRGNW 267
           Q         + G  
Sbjct: 63  QLEEIAEHTKVSGGE 77

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 54.5 bits (130), Expect = 8e-10
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT------PTEI 245
           T+LD  R    V E   LDPR V    +G H     +   +       +         ++
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDIDL 61

Query: 246 DYLTDRIQNGGTEVV 260
             + +  + GG  V+
Sbjct: 62  AAIEEEARKGGFTVL 76

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
             LD  R    ++E      + V+  ++G H G   +P+ S+V    +      D     
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQL 61

Query: 252 IQNGGTEVVEVIR 264
           + +     ++VI 
Sbjct: 62  LGDLQESAMDVIE 74

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LD +R    +A+  G+   EV   ++G H G +++PLLS              +    
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 252 IQNGGTEVVE 261
           I     +V  
Sbjct: 62  IDEIIEDVKT 71

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPS 237
           +LD  R   ++++ L + PR+V+  +VG H    +L         
Sbjct: 2   VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGG 46

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS 239
           LD  RA + +A   G     ++   V G+   T+       +   +
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGA 48

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 46.3 bits (109), Expect = 6e-07
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
           T LD  RA   +A+  G     +    V G+   T+ P L   +
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAE 45

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 45.8 bits (108), Expect = 9e-07
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 7/81 (8%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV-------KPSCSLTPTE 244
           T LD  RA   +A   G+   +V    + G+   T +P            K     T   
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 245 IDYLTDRIQNGGTEVVEVIRG 265
            +  T  +Q  G  +++    
Sbjct: 61  EEEFTITVQKRGGALIQKWGR 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.98
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.97
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	99.97
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.97
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.97
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	99.97
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.97
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.97
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.96
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.95
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.95
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.95
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.91
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.9
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.9
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.88
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.61
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.53
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.52
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.51
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.5
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.49
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.48
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.47
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.45
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.44
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.44
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.43
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.41
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.4
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.4
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.39
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.39
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.37
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.33
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.32
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.28
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.25
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.24
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.14
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.12
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.09
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.08
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.05
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.04
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.02
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.01
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.0
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.96
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.93
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.93
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.87
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.81
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.81
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.8
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.78
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.78
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.78
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.77
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.77
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.74
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.74
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	98.66
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	98.64
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.64
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.63
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	98.61
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	98.56
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.5
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.49
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.43
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.41
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	98.4
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.34
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.34
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.29
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	98.28
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.25
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	98.23
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.22
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.22
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.2
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.1
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	98.05
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.04
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.0
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.99
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.98
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.95
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.94
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.9
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.88
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.85
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.79
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.74
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.71
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.71
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.64
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.63
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.6
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.6
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.58
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.56
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.56
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.56
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.55
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.55
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.54
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.51
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.51
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.48
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.48
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.48
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.45
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.44
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.43
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.41
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.4
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.39
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.39
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.39
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.39
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.38
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.38
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.38
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.36
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.35
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.35
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.31
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.31
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.3
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.29
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.29
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.27
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.26
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.24
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.23
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.23
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.21
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.2
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.19
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.18
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.17
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.17
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.16
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.15
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.09
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.07
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.07
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.06
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.05
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.04
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.02
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.01
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.0
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.97
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.96
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.93
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.89
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.87
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.86
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.82
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.8
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.8
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.79
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.77
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.71
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.69
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.69
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.66
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.64
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.64
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.61
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.6
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.59
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.57
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.57
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.57
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.52
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.38
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.3
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.3
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.26
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.25
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.23
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.22
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.22
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.22
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.19
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.16
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.16
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.12
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.12
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.1
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.09
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.06
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.03
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.99
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.98
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.96
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.95
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.94
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.88
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.87
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.76
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.75
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.73
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.73
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.7
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.65
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.63
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.59
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.59
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	95.56
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.56
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.54
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	95.51
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.5
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.49
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.49
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.46
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	95.41
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.38
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.37
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.35
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.31
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.29
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.26
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	95.25
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	95.23
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.19
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.19
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.14
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.13
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	95.12
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.1
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.1
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	95.05
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.05
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.04
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.02
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.96
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.95
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	94.88
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.78
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.77
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.74
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.7
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.63
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	94.59
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.56
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.56
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	94.55
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.51
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.48
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.46
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	94.43
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.32
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	94.29
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.26
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.23
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.2
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.11
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.09
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.08
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.06
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.05
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.01
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	93.94
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	93.93
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.92
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.9
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.87
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.87
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	93.75
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.75
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.69
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.66
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.64
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.54
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.52
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.47
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	93.25
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	93.19
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.13
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	92.99
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.82
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.74
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.6
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.48
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	92.24
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.15
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.1
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.05
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.9
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.9
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	91.82
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.75
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.72
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.66
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.65
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	91.54
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	91.25
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	91.22
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	91.19
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.13
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.06
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.05
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.84
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	90.73
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	90.52
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.46
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	90.45
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.39
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.26
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.25
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.86
d1j8yf2	211	GTPase domain of the signal sequence recognition p	89.34
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	89.2
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	88.93
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	88.89
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	88.84
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	88.78
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.73
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.69
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.37
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	88.26
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	88.19
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.02
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	88.01
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.41
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	87.19
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	87.18
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.11
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	87.1
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	87.06
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.97
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	86.77
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	86.65
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	86.63
d1okkd2	207	GTPase domain of the signal recognition particle r	86.58
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	86.47
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	86.3
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	86.23
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	86.15
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	85.52
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	85.18
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	84.45
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	84.05
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.58
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	83.3
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	83.29
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	83.19
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	82.63
d2qy9a2	211	GTPase domain of the signal recognition particle r	81.72
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	81.54
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.56
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	80.24

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.5e-34  Score=230.97  Aligned_cols=143  Identities=65%  Similarity=1.102  Sum_probs=132.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK  127 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~~  127 (270)
                      ||+||||+|+||+++|+.|+.+++++|++|+|+++.+++++|+.|.........+..+++++++++|||+||+++|.+++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999977999999999999999999999999988888999999987666555555566777999999999999999999


Q ss_pred             CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       128 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      +|++|.+++..|.++++++++.+.+++|+++++++|||+|.+++++.+.+++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999998888889999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=2.1e-33  Score=226.77  Aligned_cols=140  Identities=29%  Similarity=0.441  Sum_probs=126.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC--ChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~--~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |.||+|||+ |+||+++|+.++.+++++||+|+|+++  .+++++||.|...+.....+..++++ +++++||+||+++|
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG   78 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   78 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecc
Confidence            469999997 999999999999999999999999987  36789999998655433334456677 67999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      .+++++++|++++..|.++++++++.|++++|+++++++|||+|    +|++++++.+|||++||||+
T Consensus        79 ~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvD----vmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          79 PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHTCCTTSEEEC
T ss_pred             cccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchH----HHHHHHHHHHCCChhhccCC
Confidence            99999999999999999999999999999999999999999999    68889999999999999996

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-33  Score=223.25  Aligned_cols=143  Identities=59%  Similarity=0.958  Sum_probs=128.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCCC-hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+|||++|.||+++++.|+. .++++|++|+|+++. +++++||.|.........+..++++ ++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~-~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCH-HHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCc-cccCCCCEEEECCCc
Confidence            8999999779999999998865 588899999999764 6788999998665555555556677 689999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      ++++|++|.+++..|.+++++++++|.+++|+++++++|||+|.+++++.+++++.++||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999988888888999999999998

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=8.8e-33  Score=222.86  Aligned_cols=139  Identities=28%  Similarity=0.506  Sum_probs=124.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCc-ceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~-~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||+ |.||+++|+.++.+++++|++|+|+++.  +|+++||.|..... ....+..++|+ +++++||+||+++|
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag   78 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEecc
Confidence            89999997 9999999999999999999999999874  68899999975422 22224456787 78999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      .++++|++|.+++.+|.++++++++.+.+++|+++++++|||+|    ++++++++.+|||++||||+
T Consensus        79 ~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          79 LARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSCCCTTSEEEC
T ss_pred             ccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChH----HHHHHHHHHHCCChhcEecC
Confidence            99999999999999999999999999999999999999999999    67888899999999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.98  E-value=1.4e-32  Score=223.07  Aligned_cols=141  Identities=26%  Similarity=0.343  Sum_probs=125.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ...||+|||| |+||+++|+.|+.+++++||+|+|+++.  +++++||.|...+........+.|+ ++++|||+||+++
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-~~l~daDvvvita   82 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-DDCRDADLVVICA   82 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-GGTTTCSEEEECC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-HHhccceeEEEec
Confidence            3459999997 9999999999999999999999999874  6889999998654322222335676 7899999999999


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      |.+++++++|.+++.+|+++++++++.+++++|+++++++|||+|    ++++++++.+|||++||||+
T Consensus        83 g~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd----~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          83 GANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             SCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHTCCGGGEEEC
T ss_pred             ccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccH----HHHHHHHHHHCcChhheecC
Confidence            999999999999999999999999999999999999999999999    68888999999999999996

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.97  E-value=5.5e-32  Score=222.01  Aligned_cols=140  Identities=27%  Similarity=0.421  Sum_probs=125.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ++.||+|||+ |.||+++++.|+.+++++|++|+|+++.  +++++||.|...+.....+....|+ +++++||+||+++
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-~~~~~adiVVitA   96 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-SVTANSKIVVVTA   96 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-GGGTTCSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-hhcccccEEEEec
Confidence            3459999997 9999999999999999999999999863  7889999997544333333456677 7799999999999


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      |.++++|++|++++..|.++++++++.|++++|+++++++|||+|    ++++++++.+|||++||||
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvD----v~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEE
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchH----HHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999    6888889999999999998

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.97  E-value=1e-31  Score=216.50  Aligned_cols=138  Identities=29%  Similarity=0.398  Sum_probs=115.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +||+|||+ |+||+++++.++.+++++||+|+|+++.  +++++||.|...+.....+ .+.++ ++++|||+||+++|.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~-~~~~~-~~~~~adivvitag~   78 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL-YAGDY-SDVKDCDVIVVTAGA   78 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEE-C--CG-GGGTTCSEEEECCCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeE-eeCcH-HHhCCCceEEEeccc
Confidence            49999998 9999999999999999999999999874  7899999997543322222 24466 789999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      +++++++|.+++.+|+++++++++.+.+++|+++++++|||+|    ++++++++.+|||++||||+
T Consensus        79 ~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvd----v~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          79 NRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH----HHHHHHHHHHTCCTTTEEEC
T ss_pred             ccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHH----HHHHHHHHHHCCCccceecC
Confidence            9999999999999999999999999999999999999999999    68888999999999999996

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=6.5e-32  Score=217.24  Aligned_cols=138  Identities=30%  Similarity=0.522  Sum_probs=122.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+|||+ |.||+++++.++.+++++||+|+|+++.  +++++|+.|...+..-..+ .++++ ++++|||+||+++|.
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~-~~~~~-~~~~~adivvitag~   77 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANI-YAGDY-ADLKGSDVVIVAAGV   77 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEE-EECCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccc-cCCcH-HHhcCCCEEEEeccc
Confidence            89999997 9999999999999999999999999874  6778899986432211112 24566 679999999999999


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ++++|++|.+++.+|.++++++++.|.++||+++++++|||+|    ++++++++.+|||++||||+
T Consensus        78 ~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd----~~t~~~~k~sg~p~~rViGt  140 (140)
T d1a5za1          78 PQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCTTTEEEC
T ss_pred             ccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHH----HHHHHHHHHHCcCccceeCc
Confidence            9999999999999999999999999999999999999999999    68888899999999999995

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.97  E-value=3.2e-32  Score=220.47  Aligned_cols=139  Identities=19%  Similarity=0.324  Sum_probs=117.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +||+|||+ |+||+++++.|+.+++++|++|+|+++.  +++++||.|...+........+.|+ ++++|||+||+++|.
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-~~l~~adiVVitaG~   79 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-HHhccccEEEEeccc
Confidence            59999997 9999999999999999999999999874  6788999997544332222235677 679999999999998


Q ss_pred             CC----CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          125 PR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       125 ~~----~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ++    ++|++|++++..|+++++++++.+++++|+++++++|||+|    ++++++++.+|||++||||+
T Consensus        80 ~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~k~sg~p~~rViGt  146 (146)
T d1hyha1          80 IKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVIGT  146 (146)
T ss_dssp             GGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             cccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHH----HHHHHHHHHhCCCccceeCc
Confidence            76    67789999999999999999999999999999999999999    68888999999999999995

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=1.6e-31  Score=215.24  Aligned_cols=136  Identities=29%  Similarity=0.448  Sum_probs=120.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC----ChhHHHHhhccccCc-ceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~----~~~~~~dl~~~~~~~-~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ||+||||+|.||+++|+.++.+++++|++|+|++.    .+++++||.|...+. ... + .+.++ ++++|||+||+++
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~-i-~~~~~-~~~~~aDiVvita   78 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTR-V-RQGGY-EDTAGSDVVVITA   78 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCE-E-EECCG-GGGTTCSEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCce-E-eeCCH-HHhhhcCEEEEec
Confidence            89999977999999999999999999999999854    257889999854332 222 2 24566 6799999999999


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      |.++++|++|.+++..|+++++++++.+.+++|+++++++|||+|    ++++++++.+|||++||||
T Consensus        79 G~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvD----vmt~~~~k~sg~~~~rViG  142 (142)
T d1o6za1          79 GIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHH----HHHHHHHHHSSSCGGGEEE
T ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHH----HHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999    6888899999999999998

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.97  E-value=2e-31  Score=214.82  Aligned_cols=139  Identities=35%  Similarity=0.539  Sum_probs=122.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCc-ceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~-~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      |||+|||| |.||+++++.|+.+++++||+|+|+++.  +++.+|+.|..... .-..+..++|+ ++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~-~~~~dadvvvitag   78 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY-ADTANSDIVIITAG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCH-HHhcCCeEEEEEEe
Confidence            89999997 9999999999999999999999999885  56678888775321 11123345676 78999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      .++++|++|.+++.+|+++++++++.+.++||+++++++|||+|    ++++++++.+|||++||||+
T Consensus        79 ~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd----~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          79 LPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHH----HHHHHHHHHHCSCGGGEEEE
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChH----HHHHHHHHHhCCChHhEeeC
Confidence            99999999999999999999999999999999999999999999    67788899999999999996

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=1.2e-31  Score=217.03  Aligned_cols=140  Identities=25%  Similarity=0.403  Sum_probs=114.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +.|||+|||+ |+||+++|+.|+++++++||+|+|+++.  +++++||.|......... ..+.|+ +++++||+||+++
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~-~~~~d~-~~~~~adivvita   80 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK-IYSGEY-SDCKDADLVVITA   80 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE-EEECCG-GGGTTCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCce-EeeccH-HHhccccEEEEec
Confidence            4579999997 9999999999999999999999999873  678899999754322222 235677 6789999999999


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      |.++++|++|.+++..|.++++++++.+.+++|+++++++|||+|    ++++++++.+|||++||||+
T Consensus        81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvd----v~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccH----HHHHHHHHHHCcCccceecC
Confidence            999999999999999999999999999999999999999999999    68888899999999999996

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.9e-31  Score=218.57  Aligned_cols=142  Identities=25%  Similarity=0.389  Sum_probs=126.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      +.+.+||+|||+ |.||+++|+.|+.+++++|++|+|+++.  +++++||.|.........+..+.|+ +++++||+||+
T Consensus        16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvi   93 (159)
T d2ldxa1          16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVII   93 (159)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEE
T ss_pred             cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEE
Confidence            455569999997 9999999999999999999999999864  6889999998654333333345677 67899999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      ++|.+++++++|.+++..|+++++++++.+.+++|+++++++|||+|    ++++++++.+|||++||||
T Consensus        94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvD----v~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHH----HHHHHHHHHHCSCTTTEEE
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHH----HHHHHHHHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999    6788889999999999998

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=9.4e-31  Score=211.51  Aligned_cols=138  Identities=30%  Similarity=0.497  Sum_probs=120.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC----hhHHHHhhccccC--cceee-eeccCCHHHHhCCCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN--AVVRG-FLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~----~~~~~dl~~~~~~--~~~~~-i~~t~d~~~al~~ADvVI  119 (270)
                      |||+||||+|.||+++|+.|+.+++++||+|+|+++.    +++++||.|....  ..... +..++|+ ++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~-~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL-RIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG-GGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH-HHhccceEEE
Confidence            8999999779999999999999999999999999863    4678899986432  22222 2334566 7899999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      ++||.++++|++|.|++..|.++++++++.+.+++|++++ ++|||+|    +|++++++.+|||++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD----~mt~~~~k~sg~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD----VMTYKALVDSKFERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHH----HHHHHHHHHHCCCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchH----HHHHHHHHHHCcCcccccC
Confidence            9999999999999999999999999999999999998765 5899999    6888889999999999998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=1.5e-30  Score=212.42  Aligned_cols=142  Identities=31%  Similarity=0.541  Sum_probs=123.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcce-eeeeccCCHHHHhCCCCEEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVV-RGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~-~~i~~t~d~~~al~~ADvVIi  120 (270)
                      .+++||+|||+ |.||+++|+.|+.+++. |++|+|+++.  +++++|+.|....... ..+..+++++++++|||+||+
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEE
Confidence            35679999998 99999999999998874 8999999875  6788999987532211 113456788889999999999


Q ss_pred             cCCCCCCCCC-----chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          121 PAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       121 ~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ++|.++++|+     +|.+++..|.++++++++.+.++||+++++++|||+|    ++++++++.+|||++||||+
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd----~lt~~~~~~sg~p~~rViG~  154 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPTNMICGM  154 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHH----HHHHHHHHHhCcChhcEecC
Confidence            9999998885     8999999999999999999999999999999999999    68888899999999999996

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=2e-30  Score=210.68  Aligned_cols=139  Identities=30%  Similarity=0.563  Sum_probs=120.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceee-eeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~-i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ++||+|||+ |.||+++++.++++++ +|++|+|+++.  +++++|+.|......... +..++++ ++++|||+||+++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~-~~~~~advvvita   79 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   79 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEecccc-cccCCCcEEEEec
Confidence            569999997 9999999999999887 59999999874  678999999754322221 2334555 7899999999999


Q ss_pred             CCCCCCCCc-----hhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          123 GVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       123 g~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      |.++++|++     |++++..|.++++++++.++++||+++++++|||+|    ++++++++.+|||++||||+
T Consensus        80 g~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          80 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchH----HHHHHHHHHHCCCchheecc
Confidence            999988865     999999999999999999999999999999999999    68888899999999999996

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.96  E-value=4.4e-30  Score=206.94  Aligned_cols=137  Identities=26%  Similarity=0.477  Sum_probs=111.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcc-eeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~-~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +||+|||+ |.||+++|+.|+.+++. |++|+|+++.  .++++|+.|...... ...+..++|+ +++++||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEEeee
Confidence            59999997 99999999999998885 7999999875  677899998754211 1123456787 67999999999999


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      .++++|++|.+++..|+++++++++.+.+++|+++++++|||+|    ++++++++.+|||++||||
T Consensus        79 ~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvD----v~t~~~~~~sglp~~rViG  141 (142)
T d1uxja1          79 APRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKERVIG  141 (142)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEE
T ss_pred             ccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchH----HHHHHHHHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999    6778889999999999998

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=3e-28  Score=198.50  Aligned_cols=143  Identities=24%  Similarity=0.359  Sum_probs=118.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCCChh--H--HHHhhccccCcceeeeeccCCHHHHhCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNTPG--V--TADISHMDTNAVVRGFLGQQQLEDALTG  114 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~~~~--~--~~dl~~~~~~~~~~~i~~t~d~~~al~~  114 (270)
                      ++||||+||||+|.||+++++.|+..+++.     +++|+|+++.++  +  .+|+.+.. .+....+..+.+.+++++|
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-LPLLKDVIATDKEEIAFKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-CTTEEEEEEESCHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccc-cccccccccCcccccccCC
Confidence            468999999988999999999998876653     899999887533  2  33444542 3444434445667799999


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCC-EEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeeee
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA-IVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~viv~sNPv~~~~~i~t~~~~~~s-g~p~~kviG~  191 (270)
                      +|+||+++|.++++|++|.+++..|.++++++++.|.+++|+. ++|++|||+|    ++|+++++.+ |+|++||+|+
T Consensus        80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD----~mt~v~~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN----TNCLTASKSAPSIPKENFSCL  154 (154)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEEC
T ss_pred             ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHH----HHHHHHHHHcCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999999865 6788999999    6788888877 9999999985

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=2.6e-27  Score=192.93  Aligned_cols=141  Identities=25%  Similarity=0.417  Sum_probs=115.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccE-----EEEEeCCCC----hhHHHHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVNT----PGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~e-----V~LvD~~~~----~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      +||||+||||+|+||+++++.|++++++++     +.++|.+..    .+..+|+.+.. .+....+..+++.+++++||
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA-FPLLAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT-CTTEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccc-cccccccccCCchhhhcccc
Confidence            578999999889999999999999988764     445555432    34456677663 34444444455667899999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHH-hCCCCCCCeee
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKK-VGTYDPKRLLG  190 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~-~sg~p~~kviG  190 (270)
                      |+||+++|.++++|++|.+++..|+++++++++.+.+++| +++++++|||+|    ++++++++ ++|||++|||+
T Consensus        82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD----v~t~~a~k~asg~p~~rvia  154 (154)
T d1y7ta1          82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN----TNALIAYKNAPGLNPRNFTA  154 (154)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEE
T ss_pred             cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH----HHHHHHHHHcCCCcHHhccC
Confidence            9999999999999999999999999999999999999986 799999999999    46665555 68999999985

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.95  E-value=4.2e-27  Score=195.56  Aligned_cols=142  Identities=22%  Similarity=0.302  Sum_probs=121.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEeCCCC----hhHHHHhhccccCcceeeeeccCCHHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT----PGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~-----eV~LvD~~~~----~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~A  115 (270)
                      ++.||+|+||+|.||+++++.|++.++++     +++|+|+++.    .+..+|+.|.. .+.+..+..+++.+++++++
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a-~~~~~~~~~~~~~~~~~~~a  101 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL-YPLLREVSIGIDPYEVFEDV  101 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT-CTTEEEEEEESCHHHHTTTC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccc-cccccCccccccchhhccCC
Confidence            34599999998999999999999876654     8889998764    45677888874 45455445566777999999


Q ss_pred             CEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHH-hCCCCCCCeeee
Q 024248          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKK-VGTYDPKRLLGV  191 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~-~sg~p~~kviG~  191 (270)
                      |+||+++|.++++|++|.|++..|.++++++++.|.+++| +++|+++|||+|    ++++++++ ++++|+++++|+
T Consensus       102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd----~~t~ia~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN----TNALICLKNAPDIPAKNFHAL  175 (175)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEEC
T ss_pred             ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH----HHHHHHHHHCCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999997 789999999999    46666666 689999999985

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=3.8e-25  Score=182.67  Aligned_cols=139  Identities=18%  Similarity=0.223  Sum_probs=108.5

Q ss_pred             CCeEEEEcCCCchHHH--HHHHHHhCCC--ccEEEEEeCCCC--hhHHHHhhcccc----CcceeeeeccCCHHHHhCCC
Q 024248           46 GFKVAVLGAAGGIGQP--LAMLMKINPL--VSVLHLYDVVNT--PGVTADISHMDT----NAVVRGFLGQQQLEDALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~--la~~l~~~g~--~~eV~LvD~~~~--~~~~~dl~~~~~----~~~~~~i~~t~d~~~al~~A  115 (270)
                      +|||+|||| |.+|..  ++..++....  .+||+|+|+++.  +++++|+.+...    ....+ +..++|.+++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~-~~~~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIE-IHLTLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCE-EEEESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCce-eeecCCchhhcCCC
Confidence            589999998 987754  3344444332  359999999874  466777765421    12222 34567888999999


Q ss_pred             CEEEEcCCCCCCCCCchhhh--------------------HHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHH
Q 024248          116 DIVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (270)
Q Consensus       116 DvVIi~ag~~~~~g~~r~~~--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~  175 (270)
                      |+||+++|.+++++++|.++                    +.+|+++++++++.|+++||++|++++|||+|    ++|+
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvd----v~t~  154 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MVTE  154 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHH
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHH----HHHH
Confidence            99999999887766655544                    46899999999999999999999999999999    7888


Q ss_pred             HHHHhCCCCCCCeeeec
Q 024248          176 VFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       176 ~~~~~sg~p~~kviG~t  192 (270)
                      ++++.  +|+.||+|+|
T Consensus       155 ~~~k~--~p~~kviGlC  169 (169)
T d1s6ya1         155 AVLRY--TKQEKVVGLC  169 (169)
T ss_dssp             HHHHH--CCCCCEEECC
T ss_pred             HHHHH--CCCCCEEeeC
Confidence            88887  5889999987

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6e-25  Score=180.26  Aligned_cols=137  Identities=16%  Similarity=0.247  Sum_probs=102.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC----CCccEEEEEeCCCCh-hHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN----PLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~----g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      |||+|||| |.+|.+.++.....    ...+||+|+|+++.+ +.+.|+.+........ +..+++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~-~~~t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFK-VLISDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSE-EEECSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCce-EEEecCcccccCCCCEEEEe
Confidence            89999998 99999887543321    224699999998753 2345666543333333 23356778999999999999


Q ss_pred             CCCCCCCCCchhhhHHh--------------------hHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          122 AGVPRKPGMTRDDLFNI--------------------NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~--------------------N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      +|.+++++++|.+++..                    +++.+.++.+ +.++||++|++++|||+|    ++|+++++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvd----iit~~~~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSG----HITEFVRNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHH----HHHHHHHHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHH----HHHHHHHHh-
Confidence            99988777776665544                    4556666655 777899999999999999    789999987 


Q ss_pred             CCCCCCeeeec
Q 024248          182 TYDPKRLLGVT  192 (270)
Q Consensus       182 g~p~~kviG~t  192 (270)
                       +|++|++|+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5889999987

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=2.1e-24  Score=177.81  Aligned_cols=138  Identities=21%  Similarity=0.277  Sum_probs=106.0

Q ss_pred             CCCeEEEEcCCCchHHHHHH--HHHhC-C-CccEEEEEeCCCC--hhHHHHhhcccc--CcceeeeeccCCHHHHhCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAM--LMKIN-P-LVSVLHLYDVVNT--PGVTADISHMDT--NAVVRGFLGQQQLEDALTGMD  116 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~--~l~~~-g-~~~eV~LvD~~~~--~~~~~dl~~~~~--~~~~~~i~~t~d~~~al~~AD  116 (270)
                      +..||+|||| |.+|.+.+.  .+... . ..+||+|+|++++  ++.+.++.+...  ..... +..++|++++++|||
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIE-FAATTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSE-EEEESCHHHHHSSCS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcc-eEecCChhhccCCCC
Confidence            4569999998 999887543  23222 2 1369999999975  333455554322  22222 344678889999999


Q ss_pred             EEEEcCCCCCCCCCchhhhHH--------------------hhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHH
Q 024248          117 IVIIPAGVPRKPGMTRDDLFN--------------------INAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       117 vVIi~ag~~~~~g~~r~~~~~--------------------~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~  176 (270)
                      +||+++|.++++|++|.+++.                    +|+++++++++.|+++||++|++++|||+|    ++|++
T Consensus        80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvd----v~t~~  155 (167)
T d1u8xx1          80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVAEA  155 (167)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHH----HHHHH
T ss_pred             EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHH----HHHHH
Confidence            999999999888888877654                    568999999999999999999999999999    78888


Q ss_pred             HHHhCCCCCCCeee
Q 024248          177 FKKVGTYDPKRLLG  190 (270)
Q Consensus       177 ~~~~sg~p~~kviG  190 (270)
                      +++.  +|+.|||.
T Consensus       156 ~~k~--~P~~rVI~  167 (167)
T d1u8xx1         156 TRRL--RPNSKILN  167 (167)
T ss_dssp             HHHH--STTCCEEE
T ss_pred             HHHH--CCcccccC
Confidence            8887  69999973

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=8.8e-23  Score=168.65  Aligned_cols=137  Identities=22%  Similarity=0.246  Sum_probs=103.3

Q ss_pred             CCCeEEEEcCCCchHHHHHH---HHHhCCC-ccEEEEEeCCCC--hhHHHHhhcccc--CcceeeeeccCCHHHHhCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAM---LMKINPL-VSVLHLYDVVNT--PGVTADISHMDT--NAVVRGFLGQQQLEDALTGMD  116 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~---~l~~~g~-~~eV~LvD~~~~--~~~~~dl~~~~~--~~~~~~i~~t~d~~~al~~AD  116 (270)
                      ++|||+|||| |.+|++++.   .+....+ ..||+|+|+++.  ++.+.|+.+...  ....+ +..++|++++++|||
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~-i~~~td~~eaL~dad   78 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLK-FEKTMNLDDVIIDAD   78 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCE-EEEESCHHHHHTTCS
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeE-EEEeCChhhcccCCC
Confidence            4799999998 999987653   3333333 359999999874  445666666422  12222 456789999999999


Q ss_pred             EEEEcCCCC------------------CCCCCchhh--------hHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcH
Q 024248          117 IVIIPAGVP------------------RKPGMTRDD--------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (270)
Q Consensus       117 vVIi~ag~~------------------~~~g~~r~~--------~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~  170 (270)
                      +||++++.+                  +.++++|.+        ++.+|+++++++++.|+++||++|++++|||+|   
T Consensus        79 ~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvd---  155 (171)
T d1obba1          79 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF---  155 (171)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH---
T ss_pred             eEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHH---
Confidence            999987654                  233444443        256899999999999999999999999999999   


Q ss_pred             HHHHHHHHHhCCCCCCCeee
Q 024248          171 PIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       171 ~i~t~~~~~~sg~p~~kviG  190 (270)
                       ++|+++++.+++   |++|
T Consensus       156 -v~t~~~~k~~~~---k~iG  171 (171)
T d1obba1         156 -EGTTLVTRTVPI---KAVG  171 (171)
T ss_dssp             -HHHHHHHHHSCS---EEEE
T ss_pred             -HHHHHHHHhcCC---CccC
Confidence             788899998765   7876

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.61  E-value=6.3e-16  Score=126.35  Aligned_cols=79  Identities=56%  Similarity=0.853  Sum_probs=72.1

Q ss_pred             echhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCCCCC
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWSD  269 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~  269 (270)
                      +|.|||+||++++|+++|++|++|+++|+||||+++++|+||++.+-..++.++++++.++++++|++|++.|++.++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~   79 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSA   79 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChH
Confidence            3789999999999999999999999999999988899999999886556888899999999999999999999887654

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.53  E-value=6e-15  Score=120.54  Aligned_cols=75  Identities=19%  Similarity=0.345  Sum_probs=65.4

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCC---------CCChhHHHHHHHHHHhhHHH
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSC---------SLTPTEIDYLTDRIQNGGTE  258 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~---------~~~~~~~~~i~~~v~~~~~~  258 (270)
                      |.||++||++++|+++|+++++|+++||||||+ ++||+||++.    |+.         .++...+++|.++++++|++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            689999999999999999999999999999998 7999999986    322         23456678899999999999


Q ss_pred             HHhhcCCCC
Q 024248          259 VVEVIRGNW  267 (270)
Q Consensus       259 i~~~k~~~~  267 (270)
                      |+++||.+.
T Consensus        80 i~~~kg~t~   88 (170)
T d1llda2          80 IINGKGATN   88 (170)
T ss_dssp             HHTSCCSCC
T ss_pred             HHhhhccch
Confidence            999987664

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.51  E-value=7e-15  Score=119.26  Aligned_cols=75  Identities=27%  Similarity=0.384  Sum_probs=64.7

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC---ChhHHHHHHHHHHhhHHHHHhhcC
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL---TPTEIDYLTDRIQNGGTEVVEVIR  264 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~---~~~~~~~i~~~v~~~~~~i~~~k~  264 (270)
                      |.||++||++++|+++|++|++|+++|||+||+ ++||+||+++    |+.++   .+.++++|.+++++++++|++.||
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg   80 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGKG   80 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHHS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHHHH
Confidence            689999999999999999999999999999988 7999999997    54443   233467899999999999999998


Q ss_pred             CCC
Q 024248          265 GNW  267 (270)
Q Consensus       265 ~~~  267 (270)
                      ++.
T Consensus        81 ~~~   83 (163)
T d1hyha2          81 YTS   83 (163)
T ss_dssp             SCC
T ss_pred             hHH
Confidence            764

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=2.7e-14  Score=116.14  Aligned_cols=78  Identities=63%  Similarity=0.884  Sum_probs=69.5

Q ss_pred             echhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCCCCC
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNWSD  269 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~s~  269 (270)
                      +|.||++||++++|+++|++|++|+++|+||||+++++|++|++.+. .+++.+++++.++++++|.++++.|+|.+|.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~~-~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~   78 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV-SFTEQEVADLTKRIQNAGTEVVEAKAGGGSA   78 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTTC-CCCHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccCC-CCcHHHHHHHHHHHHhhhhhhhhhhccCcch
Confidence            37899999999999999999999999999999998999988887643 4778889999999999999999988776653

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.49  E-value=9.9e-15  Score=118.61  Aligned_cols=70  Identities=34%  Similarity=0.674  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHhhc
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      +||++||++++|+++|++|.+|+++||||||+ ++||+||+++    |+.+ ++++.++++.++++++|++|++.+
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~   77 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL   77 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            69999999999999999999999999999998 7999999997    4433 566778899999999999999854

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=2.8e-14  Score=116.53  Aligned_cols=76  Identities=25%  Similarity=0.427  Sum_probs=66.0

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CC-------CCCChhHHHHHHHHHHhhHHHHH
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PS-------CSLTPTEIDYLTDRIQNGGTEVV  260 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~-------~~~~~~~~~~i~~~v~~~~~~i~  260 (270)
                      |.||++||++++|+++|++|.+|+++|||+||+ ++||+||+++    |+       ..++.+.++++.++++.++++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            689999999999999999999999999999988 7999999986    21       12556677889999999999999


Q ss_pred             hhcCCCCC
Q 024248          261 EVIRGNWS  268 (270)
Q Consensus       261 ~~k~~~~s  268 (270)
                      ++|+++.+
T Consensus        81 ~~~~~~~~   88 (172)
T d1a5za2          81 ERKGATHY   88 (172)
T ss_dssp             HHHSCCCH
T ss_pred             eccccchh
Confidence            99877643

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.47  E-value=2.2e-14  Score=119.32  Aligned_cols=75  Identities=25%  Similarity=0.257  Sum_probs=64.5

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccc-eEEEccCCCCceeecccccc----CCCCC-ChhH--HHHHHHHHHhhHHHHHhhc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVK----PSCSL-TPTE--IDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~~~~vp~~S~~~----p~~~~-~~~~--~~~i~~~v~~~~~~i~~~k  263 (270)
                      |.||++||+++||+++|++|++|+ .+||||||+ ++||+||+++    |+.++ .++.  ++++.+.+++++++|++.|
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            689999999999999999999996 578899998 7999999997    55443 2233  4789999999999999999


Q ss_pred             CCCC
Q 024248          264 RGNW  267 (270)
Q Consensus       264 ~~~~  267 (270)
                      |+++
T Consensus        80 g~s~   83 (188)
T d7mdha2          80 GRSS   83 (188)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            8874

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.45  E-value=6.7e-14  Score=112.64  Aligned_cols=77  Identities=21%  Similarity=0.318  Sum_probs=66.4

Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeeccccccC---CCCCChhHHHHHHHHHHhhHHHHHhhcCC
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP---SCSLTPTEIDYLTDRIQNGGTEVVEVIRG  265 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~p---~~~~~~~~~~~i~~~v~~~~~~i~~~k~~  265 (270)
                      +| |.||++||++++|+++|++|++|+++|||+||+ +++|+||++..   ......++++.+.++++..+.+++++|+.
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERKGA   78 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHHhhhh
Confidence            46 899999999999999999999999999999998 78999999972   12355677888999999999999998865


Q ss_pred             CC
Q 024248          266 NW  267 (270)
Q Consensus       266 ~~  267 (270)
                      +.
T Consensus        79 s~   80 (161)
T d1o6za2          79 TE   80 (161)
T ss_dssp             CC
T ss_pred             hh
Confidence            43

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.44  E-value=3.4e-14  Score=115.90  Aligned_cols=75  Identities=21%  Similarity=0.419  Sum_probs=65.9

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CC------CCCChhHHHHHHHHHHhhHHHHHh
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PS------CSLTPTEIDYLTDRIQNGGTEVVE  261 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~------~~~~~~~~~~i~~~v~~~~~~i~~  261 (270)
                      |.||+.||+.++|+++|++|++|+++|||+||+ ++||+||+++    |+      ..+..++++++.++++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            689999999999999999999999999999988 7999999997    21      125667788899999999999999


Q ss_pred             hcCCCC
Q 024248          262 VIRGNW  267 (270)
Q Consensus       262 ~k~~~~  267 (270)
                      +|+.+.
T Consensus        80 ~k~s~~   85 (171)
T d1ez4a2          80 LKGATF   85 (171)
T ss_dssp             HHSCCC
T ss_pred             hhhhHh
Confidence            997654

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.44  E-value=3.2e-14  Score=116.05  Aligned_cols=75  Identities=23%  Similarity=0.422  Sum_probs=63.6

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC--------ChhHHHHHHHHHHhhHHHH
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL--------TPTEIDYLTDRIQNGGTEV  259 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~--------~~~~~~~i~~~v~~~~~~i  259 (270)
                      |.||+.||++++|+++|++|++|+++||||||+ ++||+||++.    |+.++        +.++++++.++++..++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            689999999999999999999999999999998 7999999986    44332        3445678999999999999


Q ss_pred             HhhcCCCC
Q 024248          260 VEVIRGNW  267 (270)
Q Consensus       260 ~~~k~~~~  267 (270)
                      +++|+.+.
T Consensus        80 ~~~~~s~~   87 (169)
T d1y6ja2          80 IKNKGATY   87 (169)
T ss_dssp             HHHTSCCC
T ss_pred             hhhhhhhh
Confidence            99887654

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.43  E-value=5.8e-14  Score=114.05  Aligned_cols=70  Identities=29%  Similarity=0.617  Sum_probs=62.3

Q ss_pred             hhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-CChhHHHHHHHHHHhhHHHHHhhc
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-LTPTEIDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-~~~~~~~~i~~~v~~~~~~i~~~k  263 (270)
                      .||++||++++|+++|++|.+|+++||||||+ ++||+||++.    |+.+ +++..++++.++++++|++|++.+
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~   77 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL   77 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999998 7999999997    4544 456678899999999999998754

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=1e-13  Score=114.20  Aligned_cols=75  Identities=23%  Similarity=0.224  Sum_probs=62.5

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccce-EEEccCCCCceeecccccc----CCCC-------CChhHHHHHHHHHHhhHHHH
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVK----PSCS-------LTPTEIDYLTDRIQNGGTEV  259 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg~~~~vp~~S~~~----p~~~-------~~~~~~~~i~~~v~~~~~~i  259 (270)
                      |.||++||++++|+++|++|++|++ .|||+||+ ++||+||+++    |+.+       .+....+++.+.+++++.+|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6899999999999999999999977 55599998 6999999997    4322       22334568999999999999


Q ss_pred             HhhcCCCC
Q 024248          260 VEVIRGNW  267 (270)
Q Consensus       260 ~~~k~~~~  267 (270)
                      ++.||++.
T Consensus        80 ~~~~~~ss   87 (179)
T d5mdha2          80 IKARKLSS   87 (179)
T ss_dssp             HHHHSSCC
T ss_pred             hhccCcch
Confidence            99988764

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.40  E-value=2e-13  Score=111.69  Aligned_cols=71  Identities=28%  Similarity=0.579  Sum_probs=58.3

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCC------CCChhHHHHHHHHHHhhHHHHHh
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSC------SLTPTEIDYLTDRIQNGGTEVVE  261 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~------~~~~~~~~~i~~~v~~~~~~i~~  261 (270)
                      |.||++||++++|+++|++|++|+++||||||+ ++||+||+++    |+.      .....++.++...++.+|..++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            789999999999999999999999999999988 7999999996    221      13445566677777778888876


Q ss_pred             hc
Q 024248          262 VI  263 (270)
Q Consensus       262 ~k  263 (270)
                      .+
T Consensus        81 ~~   82 (174)
T d1pzga2          81 FL   82 (174)
T ss_dssp             HH
T ss_pred             ee
Confidence            54

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.40  E-value=3.9e-14  Score=115.24  Aligned_cols=77  Identities=25%  Similarity=0.459  Sum_probs=60.2

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCCC---hhHHHHHHHHHHhhHHHHHhhcC
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSLT---PTEIDYLTDRIQNGGTEVVEVIR  264 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~~---~~~~~~i~~~v~~~~~~i~~~k~  264 (270)
                      |.||++||++++|+++|+++.+|+++||||||+ ++||+||+++    |+.++.   ...++++.+.++++++.+++.|+
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~   81 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKG   81 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHhcc
Confidence            689999999999999999999999999999998 7999999996    443332   22357888899999999999888


Q ss_pred             CCCCC
Q 024248          265 GNWSD  269 (270)
Q Consensus       265 ~~~s~  269 (270)
                      ++.++
T Consensus        82 ~~~~~   86 (168)
T d1hyea2          82 GSEFG   86 (168)
T ss_dssp             ---CC
T ss_pred             Ccccc
Confidence            77653

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.39  E-value=1.6e-13  Score=111.35  Aligned_cols=75  Identities=23%  Similarity=0.446  Sum_probs=63.1

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC-------ChhHHHHHHHHHHhhHHHHH
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL-------TPTEIDYLTDRIQNGGTEVV  260 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~-------~~~~~~~i~~~v~~~~~~i~  260 (270)
                      |.||++||+.++|+++|+++++|+++|||+||+ ++||+||+++    |..++       ....++.+.+.++..+.+++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            689999999999999999999999999999988 7999999997    33332       12335688999999999999


Q ss_pred             hhcCCCC
Q 024248          261 EVIRGNW  267 (270)
Q Consensus       261 ~~k~~~~  267 (270)
                      +.|+.+.
T Consensus        80 ~~~~~s~   86 (168)
T d1ldna2          80 EKKGATY   86 (168)
T ss_dssp             HHHSCCC
T ss_pred             Hhhcccc
Confidence            9887654

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.39  E-value=1.7e-13  Score=111.73  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=64.4

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCC--------CCChhHHHHHHHHHHhhHHHH
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSC--------SLTPTEIDYLTDRIQNGGTEV  259 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~--------~~~~~~~~~i~~~v~~~~~~i  259 (270)
                      |.||++||++++|+++|+++.+|+++|||+||+ ++||+||+++    |+.        ..+.+.++++.++++..+.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            689999999999999999999999999999998 7899999996    211        123445688999999999999


Q ss_pred             HhhcCCCC
Q 024248          260 VEVIRGNW  267 (270)
Q Consensus       260 ~~~k~~~~  267 (270)
                      +++|+++.
T Consensus        82 ~~~~~~s~   89 (172)
T d1i0za2          82 IKLKGYTN   89 (172)
T ss_dssp             HHHHSSCC
T ss_pred             eecccccc
Confidence            99998764

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.37  E-value=3.3e-13  Score=109.54  Aligned_cols=74  Identities=24%  Similarity=0.472  Sum_probs=64.0

Q ss_pred             hhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CC------CCCChhHHHHHHHHHHhhHHHHHhh
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PS------CSLTPTEIDYLTDRIQNGGTEVVEV  262 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~------~~~~~~~~~~i~~~v~~~~~~i~~~  262 (270)
                      .||+.||++++|+++|++|++|+++|||+||+ ++||+||++.    |+      .....++++.+.+.+++++++++++
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence            58999999999999999999999999999988 7899999986    21      2245667888999999999999999


Q ss_pred             cCCCC
Q 024248          263 IRGNW  267 (270)
Q Consensus       263 k~~~~  267 (270)
                      |+.+.
T Consensus        81 ~~~~~   85 (165)
T d1t2da2          81 HASPY   85 (165)
T ss_dssp             TSSCC
T ss_pred             cccee
Confidence            87554

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.33  E-value=3.8e-14  Score=115.84  Aligned_cols=75  Identities=20%  Similarity=0.389  Sum_probs=62.9

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC-------ChhHHHHHHHHHHhhHHHHH
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL-------TPTEIDYLTDRIQNGGTEVV  260 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~-------~~~~~~~i~~~v~~~~~~i~  260 (270)
                      |.||++||++++|+++|+++++|+++||||||+ ++||+||++.    |..++       ..+.++++.++++.++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            689999999999999999999999999999998 6999999986    44332       22335678888999999999


Q ss_pred             hhcCCCC
Q 024248          261 EVIRGNW  267 (270)
Q Consensus       261 ~~k~~~~  267 (270)
                      ++||.+.
T Consensus        80 ~~kg~~~   86 (172)
T d1llca2          80 KLKGATF   86 (172)
T ss_dssp             SSSSCTT
T ss_pred             Hhhhhhh
Confidence            9987654

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.32  E-value=6.6e-13  Score=106.51  Aligned_cols=69  Identities=13%  Similarity=0.158  Sum_probs=57.2

Q ss_pred             chhhHHHHHHHHHHHhCCCCCcc-ceEEEccCCCCceeeccccccCCCCCChhHHHHHHHHHHhhHHHHHhhcCCCC
Q 024248          192 TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEVIRGNW  267 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v-~~~V~G~hg~~~~vp~~S~~~p~~~~~~~~~~~i~~~v~~~~~~i~~~k~~~~  267 (270)
                      |.|||+||+++|++..   +.++ +++|+||||+ ++||+||.++..   ...++++|.++++++|++|+++||.+.
T Consensus         2 t~LDsaR~r~~l~~~~---~~~v~~a~ViGeHGd-s~vp~~S~~~i~---g~~~~~~i~~~v~~~g~eIi~~kG~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAG---ARNIRRAWIIGEHGD-SMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIKRKGATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTT---CBSCCCCCEEBCSST-TCEECGGGCCCB---SCCCHHHHHHHHHTTHHHHHHHHSSCC
T ss_pred             CccHHHHHHHHHHccC---CCCcceeEEEecCCC-cccccccccccc---CccchhHhHHHHHHHHHHhhhhcccee
Confidence            6899999999997765   4455 8999999988 799999998731   123578899999999999999998764

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.9e-12  Score=105.08  Aligned_cols=75  Identities=25%  Similarity=0.363  Sum_probs=62.8

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCCC--------ChhHHHHHHHHHHhhHHHH
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSL--------TPTEIDYLTDRIQNGGTEV  259 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~~--------~~~~~~~i~~~v~~~~~~i  259 (270)
                      |.||+.||++++|+++|++|++|+++|||+||+ ++||+||++.    |+.++        ..+..+.+.+.++..+.++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            689999999999999999999999999999998 6899999997    43221        1223467889999999999


Q ss_pred             HhhcCCCC
Q 024248          260 VEVIRGNW  267 (270)
Q Consensus       260 ~~~k~~~~  267 (270)
                      +..|+++.
T Consensus        82 ~~~k~~s~   89 (172)
T d2ldxa2          82 LDMKGYTS   89 (172)
T ss_dssp             HHHHSSCC
T ss_pred             hhcccchh
Confidence            99987653

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.25  E-value=1.2e-12  Score=106.12  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=61.2

Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeecccccc----CCCC-----CChhHHHHHHHHHHhhHHHHHhh
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCS-----LTPTEIDYLTDRIQNGGTEVVEV  262 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~~----p~~~-----~~~~~~~~i~~~v~~~~~~i~~~  262 (270)
                      |.||++||++++|+++|++|++|+++||||||+ +++|+||++.    |+.+     .+...+..+.++++.++.++..+
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL   81 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEecc
Confidence            689999999999999999999999999999998 6899999996    3321     22333456777788888999988


Q ss_pred             cCCCC
Q 024248          263 IRGNW  267 (270)
Q Consensus       263 k~~~~  267 (270)
                      |++..
T Consensus        82 ~~s~~   86 (169)
T d1ldma2          82 KGYTS   86 (169)
T ss_dssp             HSSCC
T ss_pred             ccchh
Confidence            87653

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.24  E-value=3.5e-12  Score=103.94  Aligned_cols=75  Identities=23%  Similarity=0.329  Sum_probs=55.9

Q ss_pred             echhhHHHHHHHHHHHhCCCCCccceE-EEccCCCCceeecccccc----CCCCCChhH--HHHHHHHHHhhHHHHHhhc
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVK----PSCSLTPTE--IDYLTDRIQNGGTEVVEVI  263 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~~~-V~G~hg~~~~vp~~S~~~----p~~~~~~~~--~~~i~~~v~~~~~~i~~~k  263 (270)
                      +|.||++||++++|+++|++|++|+++ ||||||+ ++||+||+++    |+.++..+.  .+++.++...++..++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            478999999999999999999999875 6799998 6999999997    444443222  2344555555666666655


Q ss_pred             CCC
Q 024248          264 RGN  266 (270)
Q Consensus       264 ~~~  266 (270)
                      +++
T Consensus        80 ~~~   82 (173)
T d1y7ta2          80 GAS   82 (173)
T ss_dssp             SSC
T ss_pred             ccC
Confidence            554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8.3e-11  Score=97.46  Aligned_cols=121  Identities=15%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hhH--HH----Hhhcccc-----------CcceeeeeccC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TA----DISHMDT-----------NAVVRGFLGQQ  106 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~--~~----dl~~~~~-----------~~~~~~i~~t~  106 (270)
                      .||+|||+ |.+|+.+|..++..|+  +|+++|++++   .+.  ..    .+.....           ...+..+..++
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            49999998 9999999999999999  9999999863   110  00    1111000           00112244577


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       107 d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      |+.+++++||+|+.++              .+|++..++++..+++++| ++++  .||.+...   ++++... . -.+
T Consensus        82 d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~---i~~la~~-~-~~p  140 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTSSLQ---ITSIANA-T-TRQ  140 (192)
T ss_dssp             CHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCSSSC---HHHHHTT-S-SCG
T ss_pred             hhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCcee--eccCcccc---cchhhhh-c-cCH
Confidence            8889999999999986              3468889999999999986 4544  88887753   4544432 2 246


Q ss_pred             CCeeee
Q 024248          186 KRLLGV  191 (270)
Q Consensus       186 ~kviG~  191 (270)
                      +|++|+
T Consensus       141 ~r~ig~  146 (192)
T d1f0ya2         141 DRFAGL  146 (192)
T ss_dssp             GGEEEE
T ss_pred             hHEEee
Confidence            677666

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.12  E-value=2.2e-10  Score=102.20  Aligned_cols=176  Identities=15%  Similarity=0.070  Sum_probs=110.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ++.|||.|+||+||||++++..|+++|+  +|+.+|+........++....  ...-.+....++.++++++|.||++++
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~d~Vih~a~   88 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMFCDE--FHLVDLRVMENCLKVTEGVDHVFNLAA   88 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGTCSE--EEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcccCc--EEEeechhHHHHHHHhhcCCeEeeccc
Confidence            5689999999999999999999999999  999999865321111111110  000001111234556889999999986


Q ss_pred             CCCCC---CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHH--HHHH---HHHHhCCCCCCCeeeechh
Q 024248          124 VPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVP--IAAE---VFKKVGTYDPKRLLGVTML  194 (270)
Q Consensus       124 ~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~--i~t~---~~~~~sg~p~~kviG~t~l  194 (270)
                      .....   ..........|......+++.+.+.+.. .++..|.. +.....  ...+   .....+...|...+|.+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~  167 (363)
T d2c5aa1          89 DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKL  167 (363)
T ss_dssp             CCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCcCCCCCHHHHHHH
Confidence            54321   1223445678999999999999886543 34444321 111000  0000   0001111224456888888


Q ss_pred             hHHHHHHHHHHHhCCCCCccc-eEEEccCCC
Q 024248          195 DVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       195 dt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      ...++...+.+..|++...++ ..|+|.++.
T Consensus       168 ~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~  198 (363)
T d2c5aa1         168 ATEELCKHYNKDFGIECRIGRFHNIYGPFGT  198 (363)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence            888888889999999988886 599998764

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2e-10  Score=100.93  Aligned_cols=171  Identities=13%  Similarity=0.076  Sum_probs=106.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      .||.|+||+||+|++++..|+++|+  +|+.+|+.... ....+........+. +...+.++.++.++|+||++|+...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~~-~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~d~VihlAa~~~   77 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTG-RKRNVEHWIGHENFE-LINHDVVEPLYIEVDQIYHLASPAS   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSC-CGGGTGGGTTCTTEE-EEECCTTSCCCCCCSEEEECCSCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCcC-CHHHHHHhcCCCceE-EEehHHHHHHHcCCCEEEECcccCC
Confidence            5999999999999999999999999  99999974321 011111111111111 1112234456679999999987542


Q ss_pred             CC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC-CCCCcH--HHHHHH-HHHhCCCCCCCeeeechhhHHHHH
Q 024248          127 KP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVNSTV--PIAAEV-FKKVGTYDPKRLLGVTMLDVVRAN  200 (270)
Q Consensus       127 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN-Pv~~~~--~i~t~~-~~~~sg~p~~kviG~t~ldt~r~~  200 (270)
                      ..  ..+..+.+..|+....++++.+++...  .+|.+|. -+....  ..+.+- .....-+.|...+|.++..+..+.
T Consensus        78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~  155 (312)
T d2b69a1          78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMC  155 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHH
T ss_pred             chhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHH
Confidence            11  123455678999999999999998753  4544431 111000  000000 000001224455788888888899


Q ss_pred             HHHHHHhCCCCCccc-eEEEccCC
Q 024248          201 TFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       201 ~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      ..+++..|++...++ +.|+|.+.
T Consensus       156 ~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         156 YAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHhCCcEEEEEeeeEECCCC
Confidence            999999999988886 48999663

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.08  E-value=3.6e-11  Score=97.56  Aligned_cols=74  Identities=16%  Similarity=0.138  Sum_probs=57.4

Q ss_pred             hhhHHHHHHHHHHHhCCCCCccce-EEEccCCCCceeeccccccCC----CCC--C-hhHHHHHHHHHHhhHHHHHhhcC
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPS----CSL--T-PTEIDYLTDRIQNGGTEVVEVIR  264 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg~~~~vp~~S~~~p~----~~~--~-~~~~~~i~~~v~~~~~~i~~~k~  264 (270)
                      .||++||++++|+++|++|++|+. +||||||+ ++||+||++++.    .++  + ....+++.+.++..+..+...++
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARG   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999976 78899998 799999999832    111  1 11234566777778888888776


Q ss_pred             CCC
Q 024248          265 GNW  267 (270)
Q Consensus       265 ~~~  267 (270)
                      ++.
T Consensus        81 ~~~   83 (171)
T d1b8pa2          81 VSS   83 (171)
T ss_dssp             SCC
T ss_pred             hhh
Confidence            654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.05  E-value=8.2e-10  Score=91.73  Aligned_cols=114  Identities=15%  Similarity=0.163  Sum_probs=72.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc-------------CcceeeeeccCCHHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-------------NAVVRGFLGQQQLEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~-------------~~~~~~i~~t~d~~~al~  113 (270)
                      |||+|||+ |+||.++|..|+..|+  +|+.+|+++..  +..|.....             ...-..+..++|++++++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~~--i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~   75 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHHH--HHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh
Confidence            89999997 9999999999999999  99999998531  111111100             000011345678999999


Q ss_pred             CCCEEEEcCCCCCCCCC-chhhhHHhhHHHHHHHHHHHhHhCCCCEEEEe-cCCCCC
Q 024248          114 GMDIVIIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNS  168 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-sNPv~~  168 (270)
                      +||+++++.++|..... .....+   .....++.+.++...++..+++- |-|...
T Consensus        76 ~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGt  129 (202)
T d1mv8a2          76 DSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (202)
T ss_dssp             TCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             hCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcc
Confidence            99999999998854332 111221   23344555555555566666554 455553

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=6.1e-10  Score=98.59  Aligned_cols=172  Identities=18%  Similarity=0.167  Sum_probs=102.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccc-cCcce-e-eeeccCCHHHHhC--CCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD-TNAVV-R-GFLGQQQLEDALT--GMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~-~~~~~-~-~i~~t~d~~~al~--~ADvVI  119 (270)
                      |||.|+||+||||+.++..|+.+|+  +|+++|+...  ......+.+.. ....+ + .+.....++++++  ++|+||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi   78 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI   78 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence            8999999999999999999999998  9999997432  11111111110 01111 1 0111123455666  789999


Q ss_pred             EcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHH--HHHHHHHHhCCCCCCCeeeechhh
Q 024248          120 IPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP--IAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       120 i~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~--i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                      ++|+....+.  .+..+.+..|+....++++.+++.....+|...|.-+.....  ...   .+.....+...+|.+++.
T Consensus        79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~---e~~~~~~p~~~Y~~sK~~  155 (338)
T d1udca_          79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYV---ESFPTGTPQSPYGKSKLM  155 (338)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBC---TTSCCCCCSSHHHHHHHH
T ss_pred             ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccc---cccccCCCcchHHHHHhh
Confidence            9987542110  123467889999999999999998755544433321110000  000   011112345557778777


Q ss_pred             HHHHHHHHHHH-hCCCCCccc-eEEEccCC
Q 024248          196 VVRANTFVAEV-LGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       196 t~r~~~~lA~~-l~v~~~~v~-~~V~G~hg  223 (270)
                      ..++....++. .+.+...++ +.|+|.+.
T Consensus       156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~  185 (338)
T d1udca_         156 VEQILTDLQKAQPDWSIALLRYFNPVGAHP  185 (338)
T ss_dssp             HHHHHHHHHHHSTTCEEEEEEECEEECCCT
T ss_pred             hhHHHHHHHhhccCCeEEEEeeccEEeccC
Confidence            77776655555 456555554 58899764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=9e-10  Score=98.48  Aligned_cols=168  Identities=15%  Similarity=0.027  Sum_probs=105.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhcc--ccCcceee----eeccCCHHHHhCCC--C
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHM--DTNAVVRG----FLGQQQLEDALTGM--D  116 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~--~~~~~~~~----i~~t~d~~~al~~A--D  116 (270)
                      +|.|+||+||||++++..|++.|+  +|+.+|+....   .....+.+.  .....+..    +....++++.++++  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            455999999999999999999999  99999985321   111111110  01112221    11122345566654  9


Q ss_pred             EEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCC--CCEEEEec------CCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLIS------NPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~s------NPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      +|+++|+.....  -.+....+..|+....++++.+++.+-  ...+|.+|      +|-+.   .+    .+...+.|.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~---~~----~E~~~~~P~  153 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEI---PQ----KETTPFYPR  153 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSS---SB----CTTSCCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCC---Cc----CCCCCCCCC
Confidence            999998764321  133455678899999999999998763  34566554      22111   01    112223345


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCCC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      ..+|.+++.+..+...+++..+++...++ +.|+|+..+
T Consensus       154 ~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~  192 (357)
T d1db3a_         154 SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRG  192 (357)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC
Confidence            67888988888899999999999888886 479997644

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.01  E-value=3.5e-09  Score=92.82  Aligned_cols=181  Identities=18%  Similarity=0.206  Sum_probs=111.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----ccEEEEEeCCCChhHHHHhhccccCcceeeeec----cCCHHHHhCCCCEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIV  118 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~----~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~----t~d~~~al~~ADvV  118 (270)
                      |||.|+||+||||++++..|+++|+    ..+++.+|.....+....+........+..+..    .........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            8999999999999999999999876    347888887543221111211111122221111    11234567899999


Q ss_pred             EEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCCCcHHHHHHHHHHhCCCCCCCeeeechhh
Q 024248          119 IIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       119 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~~~~~i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                      +++|+.+....  ....+.+..|+....++++.+.++...- +|..| .-+.....  ..-+.+..-+.|...+|.++..
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~-~I~~Ss~~~yg~~~--~~~~~E~~~~~p~~~Y~~sK~~  157 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR-VVHVSTNQVYGSID--SGSWTESSPLEPNSPYAASKAG  157 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEEEGGGGCCCS--SSCBCTTSCCCCCSHHHHHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCce-EEEeecceeecCCC--CCCCCCCCCCCCCCHHHHHHHH
Confidence            99986543111  1234567889999999999999876543 44443 21110000  0000111223344567888888


Q ss_pred             HHHHHHHHHHHhCCCCCccc-eEEEccCCC-Cceeec
Q 024248          196 VVRANTFVAEVLGLDPREVD-VPVVGGHAG-VTILPL  230 (270)
Q Consensus       196 t~r~~~~lA~~l~v~~~~v~-~~V~G~hg~-~~~vp~  230 (270)
                      ...+...+++..+++...++ +.|+|.+.. +.++|.
T Consensus       158 ~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~  194 (322)
T d1r6da_         158 SDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPL  194 (322)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHH
Confidence            88888999999999998886 599996543 234444

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.00  E-value=2.1e-10  Score=94.48  Aligned_cols=119  Identities=19%  Similarity=0.271  Sum_probs=80.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hh--HHH----Hhhcccc------CcceeeeeccCCHHHHh
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTA----DISHMDT------NAVVRGFLGQQQLEDAL  112 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~--~~~----dl~~~~~------~~~~~~i~~t~d~~~al  112 (270)
                      ||+|||+ |.+|+.+|..++..|+  +|+++|++++   .+  ...    ++.....      ...+..+..++++ +++
T Consensus         6 ~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~   81 (186)
T d1wdka3           6 QAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF   81 (186)
T ss_dssp             SEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccc
Confidence            7999998 9999999999999999  9999999863   11  111    1111100      0111223445566 579


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      .+||+||.++              .+|++..+++...+.+++| ++++  +||.+...   ++++.... . .++|++|+
T Consensus        82 ~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~l~---i~~la~~~-~-~p~r~~g~  140 (186)
T d1wdka3          82 GNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTSTIS---ISLLAKAL-K-RPENFVGM  140 (186)
T ss_dssp             GGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSSC---HHHHGGGC-S-CGGGEEEE
T ss_pred             cccceeeeee--------------cchHHHHHHHHHHHHhhcCCCeeE--Eecccccc---HHHHHHhc-c-CchheEee
Confidence            9999999985              3458889999999999996 5544  88887763   44444333 2 35666665

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.96  E-value=6.3e-10  Score=100.28  Aligned_cols=175  Identities=13%  Similarity=0.107  Sum_probs=105.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---------------hhH---HHHhhccccCcceeeee----
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------------PGV---TADISHMDTNAVVRGFL----  103 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---------------~~~---~~dl~~~~~~~~~~~i~----  103 (270)
                      .|||.|+||+||+|++++..|+++|+  +|+.+|....               ...   ...+... ....+..+.    
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCC
Confidence            38999999999999999999999999  9999994210               000   0000000 001111111    


Q ss_pred             ccCCHHHHhCC--CCEEEEcCCCCCCC----C-CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCC-cHHH-HH
Q 024248          104 GQQQLEDALTG--MDIVIIPAGVPRKP----G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS-TVPI-AA  174 (270)
Q Consensus       104 ~t~d~~~al~~--ADvVIi~ag~~~~~----g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~-~~~i-~t  174 (270)
                      ....+++++++  .|+||++|+....+    + ....++...|+....++++.+++++.+..++..|..... .... ..
T Consensus        78 d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~  157 (393)
T d1i24a_          78 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIE  157 (393)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBC
T ss_pred             CHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccc
Confidence            11124455654  59999998754211    1 112345688999999999999999888777766632210 0000 00


Q ss_pred             HHHH--Hh--------CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccce-EEEccCC
Q 024248          175 EVFK--KV--------GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV-PVVGGHA  223 (270)
Q Consensus       175 ~~~~--~~--------sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg  223 (270)
                      +...  ..        ....+...+|.+++....+...+++..+++...++. .|+|.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~  217 (393)
T d1i24a_         158 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  217 (393)
T ss_dssp             SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             cccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCc
Confidence            0000  00        001233457888888888888899999998888864 8999653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.93  E-value=1.7e-09  Score=94.28  Aligned_cols=171  Identities=17%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHH---HHhhccccCcceee----eeccCCHHHHhCCC--CEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT---ADISHMDTNAVVRG----FLGQQQLEDALTGM--DIV  118 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~---~dl~~~~~~~~~~~----i~~t~d~~~al~~A--DvV  118 (270)
                      ||.|+||+||||++++..|+++|+  +|+.+|+.......   ..+...   ..+..    +....+++++++++  |+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~---~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhcc---CCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            899999999999999999999999  99999964322211   112111   11111    11122356666654  999


Q ss_pred             EEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCC-CCcHHHH--H------------HHHHHhC
Q 024248          119 IIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-NSTVPIA--A------------EVFKKVG  181 (270)
Q Consensus       119 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv-~~~~~i~--t------------~~~~~~s  181 (270)
                      |++|+......  .+..+....|+....++++.+.+....-.++..|.-+ .......  .            ......+
T Consensus        77 ih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T d1orra_          77 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST  156 (338)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTS
T ss_pred             EeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCC
Confidence            99986542111  1234667889999999999999887666655554211 0000000  0            0000000


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      .+.+...+|........+....++.++.....+. ..++|+++
T Consensus       157 ~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (338)
T d1orra_         157 QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQ  199 (338)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTC
T ss_pred             ccccccccccccchhhhhhhhhhhccCcccccccccceeeccc
Confidence            0112233445556666677777788887776663 46776554

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.93  E-value=8.8e-10  Score=98.88  Aligned_cols=183  Identities=16%  Similarity=0.123  Sum_probs=107.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeee----ccCCHHHHhC--CCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALT--GMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~----~t~d~~~al~--~ADvVIi  120 (270)
                      |||.|+||+||+|++++..|+..|+ ..|+++|..........+.+......+..+.    ....+++.++  ++|+||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            8999999999999999999999888 2477788654222111122221112222111    1112334444  5899999


Q ss_pred             cCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCC--------CEEEEecC-CCCCcHHH--HHHH------HHHhC
Q 024248          121 PAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPK--------AIVNLISN-PVNSTVPI--AAEV------FKKVG  181 (270)
Q Consensus       121 ~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~--------a~viv~sN-Pv~~~~~i--~t~~------~~~~s  181 (270)
                      +|+....+.  .+..+.+..|+....++++.+.+....        ..++..|. -+......  ..+-      .....
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~  159 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT  159 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCC
Confidence            987542100  123456788999999999988775422        24554432 11100000  0000      00011


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCCCC-ceeec
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGV-TILPL  230 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~~-~~vp~  230 (270)
                      ...|..++|.+++.+.++...+++..+++...++ +.|+|+++.. .++|.
T Consensus       160 ~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~  210 (361)
T d1kewa_         160 AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPL  210 (361)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHH
Confidence            1223455888889999999999999999998886 5999987542 34444

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=3.2e-09  Score=92.41  Aligned_cols=161  Identities=14%  Similarity=0.087  Sum_probs=101.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh--CCCCEEEEcCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIPAG  123 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al--~~ADvVIi~ag  123 (270)
                      ++||.|+||+||+|++++..|+++|+  +++++|....    .|+.+..            .+++.+  ...|+|+++++
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~------------~~~~~~~~~~~d~v~~~a~   63 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR------------AVHDFFASERIDQVYLAAA   63 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH------------HHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH------------HHHHHHhhcCCCEEEEcch
Confidence            35999999999999999999999998  7777776432    1222211            111222  35799999875


Q ss_pred             CCCCC---CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcH--HHHHHHHH-HhCCCCCCCeeeechhhHH
Q 024248          124 VPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV--PIAAEVFK-KVGTYDPKRLLGVTMLDVV  197 (270)
Q Consensus       124 ~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~--~i~t~~~~-~~sg~p~~kviG~t~ldt~  197 (270)
                      .....   .....+++..|+....++++.+.+..-.-+|...|.-+....  ..++|-.. ..+-.++...+|.+++...
T Consensus        64 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E  143 (315)
T d1e6ua_          64 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGI  143 (315)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHH
T ss_pred             hccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHH
Confidence            43211   112445678899999999999988754434433332221100  00000000 0000112235888889999


Q ss_pred             HHHHHHHHHhCCCCCccc-eEEEccCCC
Q 024248          198 RANTFVAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       198 r~~~~lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      ++...+++..|++..-++ +.|+|+++.
T Consensus       144 ~~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         144 KLCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            999999999999988886 599998754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.81  E-value=1.4e-08  Score=81.02  Aligned_cols=90  Identities=22%  Similarity=0.257  Sum_probs=61.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      |||+|||+ |.+|+++|..|.+.|+  +|+.+|++++.. .+.+..-.+        ...++. +++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~~~~--------~~~~~~-~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQLVD--------EAGQDL-SLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTSCS--------EEESCG-GGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhhccc--------eeeeec-ccccccccccccC--c
Confidence            89999998 9999999999999999  999999975321 112111111        112344 7899999999986  2


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecC
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sN  164 (270)
                                    ...+.++++.+.... ++.+|+.+++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          123456667776654 5666655543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.81  E-value=3.8e-08  Score=86.64  Aligned_cols=174  Identities=14%  Similarity=0.025  Sum_probs=108.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hh---HHHHhhccccCcceeeeec-cCC---HHHHhCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTNAVVRGFLG-QQQ---LEDALTGM  115 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~---~~~dl~~~~~~~~~~~i~~-t~d---~~~al~~A  115 (270)
                      ++++|.|+||+||+|++++..|.+.|+  +|..+|+...  ..   ....+........+..+.. ..|   ......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            345899999999999999999999999  9999997432  11   1111111000111111111 112   34457789


Q ss_pred             CEEEEcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHH--HHHHHHHHhCCCCCCCeeee
Q 024248          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP--IAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       116 DvVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~--i~t~~~~~~sg~p~~kviG~  191 (270)
                      |.|++++.....+  ..+....+..|+....++++.+.+.....+|...|..+.....  ..    .+.+-..|...+|.
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~----~E~~~~~p~~~Y~~  168 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPK----VEDTIGKPLSPYAV  168 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSB----CTTCCCCCCSHHHH
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCc----cCCCCCCCCCcchH
Confidence            9999887543211  1223456788999999999999987655444444432221000  00    01111234466888


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccc-eEEEccCCC
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      +++..+++...+++..+++...++ +.|+|.+++
T Consensus       169 sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         169 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            888899999999999999988887 479997644

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.2e-08  Score=83.97  Aligned_cols=105  Identities=15%  Similarity=0.118  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCccee--eeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR--GFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~--~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +||+|+||+|++|++++..|+.+|+  +|++++++..+..  +....  ...+.  .+....+++++++++|+||.++|.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~~--~~~~~--~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLP--SEGPR--PAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSC--SSSCC--CSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhcc--ccccc--ccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            4899999999999999999999999  9999998753211  01100  00000  011123567889999999999886


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .......     ..+....+++++.+++..-+ .+|.+|
T Consensus        78 ~~~~~~~-----~~~~~~~~~l~~aa~~~~v~-r~i~~s  110 (205)
T d1hdoa_          78 RNDLSPT-----TVMSEGARNIVAAMKAHGVD-KVVACT  110 (205)
T ss_dssp             TTCCSCC-----CHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             CCchhhh-----hhhHHHHHHHHHHHHhcCCC-eEEEEe
Confidence            5322211     23456778888988876643 344443

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=6.4e-09  Score=91.57  Aligned_cols=169  Identities=13%  Similarity=0.057  Sum_probs=100.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeee----ccCC-HHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQ-LEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~----~t~d-~~~al~~ADvVIi~  121 (270)
                      |||.|+||+||||++++..|+.+|+. +|+.+|+.....  ..+..   .+.+..+.    ...+ .+.+.+++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~~--~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGG--GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcch--hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            89999999999999999999888843 899999864311  11111   11111111    1112 23367899999999


Q ss_pred             CCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcH--HHHHHHHHHhCC---CCCCCeeeechh
Q 024248          122 AGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV--PIAAEVFKKVGT---YDPKRLLGVTML  194 (270)
Q Consensus       122 ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~--~i~t~~~~~~sg---~p~~kviG~t~l  194 (270)
                      |+......  ......+..|+....++++.+.+....- ++..|.-+....  ....+.......   ..+...+|.+++
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~-~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~  153 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI-IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQ  153 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE-EEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHH
T ss_pred             cccccccccccCCccccccccccccccccccccccccc-cccccccccccccccccccccccccccccCCCcchhhhccc
Confidence            87643211  1123567899999999999998865433 222221110000  000000000000   112345777888


Q ss_pred             hHHHHHHHHHHHhCCCCCccc-eEEEccC
Q 024248          195 DVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       195 dt~r~~~~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .+.++...+++..|++..-++ ..++|..
T Consensus       154 ~~E~~~~~~~~~~~~~~~i~r~~~~~g~~  182 (342)
T d2blla1         154 LLDRVIWAYGEKEGLQFTLFRPFNWMGPR  182 (342)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEECSEECSS
T ss_pred             chhhhhhhhhcccCceeEEeecccccccc
Confidence            888999999999999877774 4677754

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.78  E-value=1.2e-08  Score=83.05  Aligned_cols=98  Identities=20%  Similarity=0.248  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccC----c--ceeeeeccCCHHHHhCCCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTN----A--VVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~----~--~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      |||+|||+ |..|+++|..|+.+|+  +|.++.+.........+......    .  ....+..++|+++++++||+||+
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~   77 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLL   77 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhc
Confidence            89999998 9999999999999998  99999875433333333322111    1  11124557889999999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +...                ..++++++.+..+.++..+++++
T Consensus        78 avps----------------~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          78 GVST----------------DGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             CSCG----------------GGHHHHHHHHTTTCCSCEEEECC
T ss_pred             ccch----------------hhhHHHHHhhccccccceecccc
Confidence            8621                22356777777776666665554

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.78  E-value=1.3e-08  Score=89.98  Aligned_cols=175  Identities=15%  Similarity=0.115  Sum_probs=104.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee----eeccCCHHHHhCCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG----FLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~----i~~t~d~~~al~~ADvVIi~  121 (270)
                      .|||.|+||+||||++++..|+++|+--.|+.+|.....+....+... ....+..    +.....+.++++++|.|++.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            479999999999999999999998873356666643211111111110 0111111    11122356778999999998


Q ss_pred             CCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHH-----------HHHHhCCCCCCCe
Q 024248          122 AGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE-----------VFKKVGTYDPKRL  188 (270)
Q Consensus       122 ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~-----------~~~~~sg~p~~kv  188 (270)
                      |+......  .+..+.+..|+....++++.+.+.... ++...|.-+....+ ..+           .+...+...|...
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k-~i~~ss~~vyg~~~-~~~~~~~~~~~~~~~~~e~~~~~p~s~  158 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR-FHHVSTDEVYGDLP-LREDLPGHGEGPGEKFTAETNYNPSSP  158 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCE-EEEEEEGGGGCCBC-CGGGSTTTTCSTTSSBCTTSCCCCCSH
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhcccccc-ccccccceEecccC-ccccccccccCcccccccCCCCCCCCH
Confidence            86543211  123456788999999999999887643 22222222111000 000           0000111223345


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +|.+++...++...+++..+++...++ +.|+|++.
T Consensus       159 Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         159 YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            888888888888888899999888886 48999654

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.77  E-value=1.1e-08  Score=91.79  Aligned_cols=176  Identities=14%  Similarity=0.100  Sum_probs=103.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCCC----------hhHH-HHhhcccc------Ccceeeee-ccC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT----------PGVT-ADISHMDT------NAVVRGFL-GQQ  106 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~~----------~~~~-~dl~~~~~------~~~~~~i~-~t~  106 (270)
                      .|||.|+||+||||++++..|++ .++  +|+++|.-..          .... ..+.....      ...+..+. .-.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            48999999999999999988865 788  9999995210          1111 11111100      01111110 011


Q ss_pred             C---HHHHh---CCCCEEEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcH---HHHHH
Q 024248          107 Q---LEDAL---TGMDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV---PIAAE  175 (270)
Q Consensus       107 d---~~~al---~~ADvVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~---~i~t~  175 (270)
                      |   +++++   +++|+||++|+......  .........|.....++++.+++..+..++...+--+....   ....+
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  159 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTN  159 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----C
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccc
Confidence            2   33334   57899999987542111  12334567899999999999998776654443321110000   00000


Q ss_pred             --HHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccce-EEEccCC
Q 024248          176 --VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV-PVVGGHA  223 (270)
Q Consensus       176 --~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~-~V~G~hg  223 (270)
                        -+.+..-+.|...+|.+++...++...+++.+|++...++. .++|...
T Consensus       160 ~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~  210 (383)
T d1gy8a_         160 AEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHE  210 (383)
T ss_dssp             CCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCT
T ss_pred             ccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCc
Confidence              00001112345668888888889999999999999988864 8999654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.4e-09  Score=86.70  Aligned_cols=116  Identities=21%  Similarity=0.167  Sum_probs=76.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ++++||.|+||||++|++++..|+++|...+|+++++++...........  ......+....++.++++++|+||+++|
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i--~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV--NQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC--EEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccccccee--eeeeeccccccccccccccccccccccc
Confidence            34568999999999999999999998877799999987531100000000  0000011122356788999999999987


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ... ......++...|.....++++.+.+...+. ++.+|
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~-fi~~S  127 (232)
T d2bkaa1          90 TTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKH-FNLLS  127 (232)
T ss_dssp             CCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred             ccc-cccchhhhhhhcccccceeeecccccCccc-cccCC
Confidence            542 112345567788899999999988765443 44444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.74  E-value=6.5e-08  Score=77.55  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HHHhhcc---ccCc--ceeeeeccCCHHHHhCCCCEEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHM---DTNA--VVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~dl~~~---~~~~--~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      +||+|||+ |.+|+.+|..|+++|+  +|.+||+++.... ..+....   ....  .......+++.++++++||+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            59999998 9999999999999999  9999999753211 1111100   0000  00111235678899999999999


Q ss_pred             cCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCC
Q 024248          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (270)
Q Consensus       121 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNP  165 (270)
                      +....                ...+++++++.+- ++.+|+...|.
T Consensus        79 ~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          79 VVPAI----------------HHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             CSCGG----------------GHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEchh----------------HHHHHHHHhhhccCCCCEEEEeCCC
Confidence            86221                1356777787775 56665544443

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=3.8e-08  Score=86.92  Aligned_cols=172  Identities=16%  Similarity=0.056  Sum_probs=96.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hh---HHHHhhccccCccee-eeeccCCHHHHhC--CCCEEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTNAVVR-GFLGQQQLEDALT--GMDIVI  119 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~---~~~dl~~~~~~~~~~-~i~~t~d~~~al~--~ADvVI  119 (270)
                      .|.|+||+||||++++..|+.+|+  +|+++|+...  ..   ....+.+.. ...+. .+....+++++++  ++|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~-v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHH-IPFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSC-CCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhcccC-CeEEEeecCCHHHHHHHHhccCCCEEE
Confidence            488999999999999999999998  9999996432  11   111111111 00010 0111122344444  789999


Q ss_pred             EcCCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHH--HHHHHhCCCCCCCeeeechhh
Q 024248          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA--EVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       120 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t--~~~~~~sg~p~~kviG~t~ld  195 (270)
                      ++|+.....  ......+...|......+++.+++.....++...|--+.....-..  +-+.+.....+...+|.++..
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~  159 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYA  159 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHH
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHHHH
Confidence            998754211  1123456778999999999999987766555444421211000000  000011112234457778777


Q ss_pred             HHHHHHHHHHH--hCCCCCccc-eEEEccC
Q 024248          196 VVRANTFVAEV--LGLDPREVD-VPVVGGH  222 (270)
Q Consensus       196 t~r~~~~lA~~--l~v~~~~v~-~~V~G~h  222 (270)
                      ..++...+.+.  .+++...++ +.|+|.+
T Consensus       160 ~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~  189 (347)
T d1z45a2         160 IENILNDLYNSDKKSWKFAILRYFNPIGAH  189 (347)
T ss_dssp             HHHHHHHHHHHSTTSCEEEEEEECEEECCC
T ss_pred             HHHHHHHHHHhhccCCcEEEEeecceEeec
Confidence            77776666554  344444454 4677754

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=98.66  E-value=2.3e-07  Score=81.76  Aligned_cols=115  Identities=17%  Similarity=0.023  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HH---HHhhccccCcc-e-eeeeccCCHHHHhCCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VT---ADISHMDTNAV-V-RGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~---~dl~~~~~~~~-~-~~i~~t~d~~~al~~ADvVI  119 (270)
                      ..||+|+||+||||++++..|+++|+  +|+...++.... ..   .+......... + ..+.....+.+++.++|.|+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            46999999999999999999999998  998877754211 11   11111100000 0 01122234567899999999


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +.++... ...+...+...|+....++++.+.+..--..++.+|
T Consensus        89 ~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S  131 (342)
T d1y1pa1          89 HIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             ECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             hhccccc-ccccccccccchhhhHHHHHHhhhcccccccccccc
Confidence            9887543 233445566789999999999998763223344443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.64  E-value=1.8e-07  Score=81.07  Aligned_cols=172  Identities=16%  Similarity=0.041  Sum_probs=103.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeec-cCC---HHHHh--CCCCEEEEc
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL--TGMDIVIIP  121 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~-t~d---~~~al--~~ADvVIi~  121 (270)
                      ||.|+||+||||++++..|+++|+  +|+.+|+.........+.+......+..+.. -.|   +++.+  ...++++++
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence            899999999999999999999999  9999998753211111111111122221111 112   22222  246677777


Q ss_pred             CCCCCCC--CCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCeeeechhhHHH
Q 024248          122 AGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (270)
Q Consensus       122 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r  198 (270)
                      ++.....  .....+.+..|+....++++.+++..+..+++..|.- +.....  .....+.+-+.+...+|.+++...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~--~~~~~E~~~~~p~~~Y~~sK~~~E~  157 (321)
T d1rpna_          80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQ--AERQDENTPFYPRSPYGVAKLYGHW  157 (321)
T ss_dssp             CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred             cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCccc--CCCCCCCCCccccChhHHHHHHHHH
Confidence            6543211  1224456788999999999999998877766665421 110000  0000111112234557778888888


Q ss_pred             HHHHHHHHhCCCCCccc-eEEEccCC
Q 024248          199 ANTFVAEVLGLDPREVD-VPVVGGHA  223 (270)
Q Consensus       199 ~~~~lA~~l~v~~~~v~-~~V~G~hg  223 (270)
                      +...+++..+++...++ +.++|..+
T Consensus       158 ~~~~~~~~~~~~~~~lr~~~vyGp~~  183 (321)
T d1rpna_         158 ITVNYRESFGLHASSGILFNHESPLR  183 (321)
T ss_dssp             HHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             HHHHHHhhcCCcEEEEEEecccCCCc
Confidence            88888999999877775 47899643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=3.1e-08  Score=78.30  Aligned_cols=100  Identities=19%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      |||+|+|+ |.+|+.++..|++.|+  +|+++++++.................. ...+.+ .+++.++|+||++.... 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNE-SLTAND-PDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEE-EEEESC-HHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCcccccc-ccccch-hhhhcccceEEEeeccc-
Confidence            89999998 9999999999999999  999999986532211111111111111 122334 47789999999997322 


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEecCCCC
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN  167 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~sNPv~  167 (270)
                                     -+.+.++.+... .++..|+.+.|-.+
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~  101 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMG  101 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCccc
Confidence                           124456666554 36788888888766

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.63  E-value=4.8e-08  Score=80.22  Aligned_cols=75  Identities=17%  Similarity=0.251  Sum_probs=53.8

Q ss_pred             CCCCC-eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhh--cccc--Ccce---eeeeccCCHHHHhCC
Q 024248           43 GSPGF-KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMDT--NAVV---RGFLGQQQLEDALTG  114 (270)
Q Consensus        43 ~~~~m-KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~--~~~~--~~~~---~~i~~t~d~~~al~~  114 (270)
                      ....| ||+|+|+ |..|+++|..|+.+|+  +|.+++++++.  +..+.  +...  .+.+   ..+..++|+++++++
T Consensus         3 ~~~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~--~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~   77 (189)
T d1n1ea2           3 ELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEE--VRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG   77 (189)
T ss_dssp             CCCCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHH--HHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT
T ss_pred             ccceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHH--HHHHhhcccccccccccccccccccchhhhhccCC
Confidence            34455 6999998 9999999999999998  99999997542  22222  1100  1111   124557899999999


Q ss_pred             CCEEEEcC
Q 024248          115 MDIVIIPA  122 (270)
Q Consensus       115 ADvVIi~a  122 (270)
                      ||+||++.
T Consensus        78 ad~iiiav   85 (189)
T d1n1ea2          78 AEIILFVI   85 (189)
T ss_dssp             CSCEEECS
T ss_pred             CCEEEEcC
Confidence            99999986

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.6e-08  Score=86.55  Aligned_cols=172  Identities=12%  Similarity=0.043  Sum_probs=103.3

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hhHHHHhhcc---ccCcceeeeec-cCC---HHHHhC--
Q 024248           47 FKV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM---DTNAVVRGFLG-QQQ---LEDALT--  113 (270)
Q Consensus        47 mKI-~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~~~dl~~~---~~~~~~~~i~~-t~d---~~~al~--  113 (270)
                      .|| .|+||+||||++++..|+++|+  +|+.+|+...   .+....+...   .....+..+.. -+|   +.+++.  
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            389 7999999999999999999999  9999999642   1111111111   00111221111 112   333333  


Q ss_pred             CCCEEEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCC-C-CEEEEec-CCCCCcH--HHHHHHHHHhCCCCCC
Q 024248          114 GMDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCP-K-AIVNLIS-NPVNSTV--PIAAEVFKKVGTYDPK  186 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p-~-a~viv~s-NPv~~~~--~i~t~~~~~~sg~p~~  186 (270)
                      +.|+|+++++......  ....+++..|+..+.++++.+++.+- + ..++.+| .-+....  ..+    .+.+-+.|.
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~----~E~~~~~P~  154 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQ----KETTPFYPR  154 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSB----CTTSCCCCC
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCC----CCCCCCCCC
Confidence            5678888775432110  12345568899999999999988763 3 4565554 1111000  001    122223455


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCCC
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      ..+|.+++...++...+++..+++...++ +.|+|+...
T Consensus       155 ~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~  193 (347)
T d1t2aa_         155 SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRG  193 (347)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCC
Confidence            67888988888888888999999877775 578997533

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.56  E-value=6e-08  Score=84.68  Aligned_cols=171  Identities=12%  Similarity=0.023  Sum_probs=99.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC---hhHHHHh----hccccCcceeee-eccCC---HHHHh--C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADI----SHMDTNAVVRGF-LGQQQ---LEDAL--T  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~~~dl----~~~~~~~~~~~i-~~t~d---~~~al--~  113 (270)
                      .|+.|+||+||+|++++..|+++|+  +|+.+|+...   ......+    ... ....+..+ ....+   +++++  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNV-NKALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhc-cccceEEEEccccCHHHHHHHHhhh
Confidence            4899999999999999999999999  9999998532   1111111    110 01111111 01112   23333  3


Q ss_pred             CCCEEEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhC----CCCEEEEecCC-CCCcH-HHHHHHHHHhCCCCC
Q 024248          114 GMDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCC----PKAIVNLISNP-VNSTV-PIAAEVFKKVGTYDP  185 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~sNP-v~~~~-~i~t~~~~~~sg~p~  185 (270)
                      +.|+||++|+......  .........|......+.+.+++..    ....++..|.. +.... ...    .+..-+.|
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~----~E~~~~~p  154 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQ----SETTPFHP  154 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSB----CTTSCCCC
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCC----CCCCCCCC
Confidence            6799999997642111  1223456677777777777776543    22333333211 11000 000    11111334


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccc-eEEEccCCC
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      ...+|.+.+.+..+...+++..+++...++ +.|+|++++
T Consensus       155 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         155 RSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             cchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            556888888888888889999999877775 489998654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.50  E-value=1.9e-07  Score=76.27  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcc------------ccCcceeeeeccCCHHHHhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------------DTNAVVRGFLGQQQLEDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~------------~~~~~~~~i~~t~d~~~al~~  114 (270)
                      |||+|||. |+||..+|..++ +|+  +|+.||+++..  +..|...            ...... .+..+++...+..+
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~~--v~~l~~g~~p~~e~~l~~~~~~~~~-~~~~~~~~~~~~~~   73 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPSK--VDKINNGLSPIQDEYIEYYLKSKQL-SIKATLDSKAAYKE   73 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCC-CEEEESCHHHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHHH--HHHHhhcccccchhhHHHHhhhhhh-hhhccchhhhhhhc
Confidence            89999997 999999997665 688  99999998531  1111110            000011 12334566678899


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +|+++++.+++.....+..     ....+....+.+....+...+++-|
T Consensus        74 ~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~iii~S  117 (196)
T d1dlja2          74 AELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSVNSHATLIIKS  117 (196)
T ss_dssp             CSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHHCSSCEEEECS
T ss_pred             cccccccCCccccccCCCc-----ceeEEeehhhhhhhcccceeEEeee
Confidence            9999999877643221111     1234555666666666666655544

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.49  E-value=2.8e-07  Score=73.15  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=49.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|||. |.+|+.+|..|+..|+  +|+.+|+++..  ..++.....       ....+.++++++||+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~~--~~~~~~~~~-------~~~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEA--IADVIAAGA-------ETASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTTC-------EECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcch--hHHHHHhhh-------hhcccHHHHHhCCCeEEEEc
Confidence            89999997 9999999999999999  99999997532  223332211       12346788999999999986

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.43  E-value=9.7e-07  Score=71.83  Aligned_cols=163  Identities=15%  Similarity=0.020  Sum_probs=89.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      ++|.|+||+|++|++++..|+++|+.-.|+.+.+++.  ...++.... ......+....++.++++++|.||++++...
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~--~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~~   80 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ--GKEKIGGEA-DVFIGDITDADSINPAFQGIDALVILTSAVP   80 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH--HHHHTTCCT-TEEECCTTSHHHHHHHHTTCSEEEECCCCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH--HHHhccCCc-EEEEeeeccccccccccccceeeEEEEeecc
Confidence            3899999999999999999999997224444544422  122222110 0000001112245678999999999986532


Q ss_pred             CCC---------------CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          127 KPG---------------MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       127 ~~g---------------~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ...               .........|....+.++...............+...+.            ...|.......
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~  148 (252)
T d2q46a1          81 KMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN------------PDHPLNKLGNG  148 (252)
T ss_dssp             EECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC------------TTCGGGGGGGC
T ss_pred             ccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCC------------CCccccccccc
Confidence            100               012233456677788888887766554433322211110            00111111111


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccc-eEEEccCCC
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~-~~V~G~hg~  224 (270)
                      .......+...+.+..+++..-++ +.++|+++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~  182 (252)
T d2q46a1         149 NILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGG  182 (252)
T ss_dssp             CHHHHHHHHHHHHHHSSSCEEEEEECEEECSCTT
T ss_pred             chhhhhhhhhhhhhcccccceeecceEEECCCcc
Confidence            233344556677788888877775 488998754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.3e-07  Score=78.19  Aligned_cols=173  Identities=17%  Similarity=0.053  Sum_probs=94.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-------hhH-HHHhhccccCcceeeeec-cCC---HHHHhCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------PGV-TADISHMDTNAVVRGFLG-QQQ---LEDALTG  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-------~~~-~~dl~~~~~~~~~~~i~~-t~d---~~~al~~  114 (270)
                      .||.|+||+||||++++..|+.+|+  +|+.+|+...       ... ...+... ....+..+.. -+|   +++++.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQEL-TGRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHH-HTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHh-cCCCcEEEEeeccccccccccccc
Confidence            4899999999999999999999998  9999996321       001 1111111 0111211111 122   3444544


Q ss_pred             C--CEEEEcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCC-CCCcHHHHHHHHHHhCCCCCCCee
Q 024248          115 M--DIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP-VNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       115 A--DvVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNP-v~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      .  |+|+++|+......  ....+.+..|+....++++.+++++...++ ++|.. +........ ......-..+...+
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i-~~ss~~~~~~~~~~~-~~~~~~~~~~~~~Y  157 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV-FSSSATVYGNPQYLP-LDEAHPTGGCTNPY  157 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEEEGGGGCSCSSSS-BCTTSCCCCCSSHH
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc-ccccceeeecccccc-ccccccccccCChH
Confidence            4  46777876542100  123456788999999999999987655433 33211 100000000 00000001223346


Q ss_pred             eechhhHHHHHHHHHHH-hCCCCCccc-eEEEccCCC
Q 024248          190 GVTMLDVVRANTFVAEV-LGLDPREVD-VPVVGGHAG  224 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~-l~v~~~~v~-~~V~G~hg~  224 (270)
                      |.+.+-..+....+++. .+.+...++ ..++|.++.
T Consensus       158 ~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~  194 (346)
T d1ek6a_         158 GKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHAS  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTT
T ss_pred             HHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCC
Confidence            66655555555556565 567666664 488997754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=98.40  E-value=3.1e-07  Score=80.55  Aligned_cols=113  Identities=17%  Similarity=0.114  Sum_probs=72.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeec-cCC---HHHHhC--CCCEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLG-QQQ---LEDALT--GMDIVI  119 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~-t~d---~~~al~--~ADvVI  119 (270)
                      +||.|+||+||||++++..|+++|+  +|..+|++.... ...+.....  ..+..+.. -+|   +.++++  ..|+|+
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARVA--DGMQSEIGDIRDQNKLLESIREFQPEIVF   84 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTTT--TTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhhcc--cCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence            5999999999999999999999999  999999976421 111111110  11111110 112   334454  558999


Q ss_pred             EcCCCCCCCC--CchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          120 IPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       120 i~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ++++.+....  .........|+....++++.+.+......++..|
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            9886542110  1123456779999999999999887666555444

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.34  E-value=2.2e-07  Score=78.89  Aligned_cols=99  Identities=17%  Similarity=0.181  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi~ag~  124 (270)
                      |||.|+||+||||++++..|...|   +++.+|+.... ...|+.+.            ..+++.++  +.|+||++||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~~------------~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCCH------------HHHHHHHHHcCCCEEEEeccc
Confidence            899999999999999999888877   55666765421 11233221            12344554  46999999975


Q ss_pred             CCC--CCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          125 PRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       125 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ...  ...........|......+++.+++.+  ..++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~s  103 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYS  103 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhccc--ccccccc
Confidence            421  112234456778888889998887653  4455454

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.34  E-value=2.1e-06  Score=68.07  Aligned_cols=93  Identities=14%  Similarity=0.172  Sum_probs=59.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      ||+|||+ |.+|+++|..|...++..+|+.+|+++.. ..+.+....+      .. .+........++|+||++..   
T Consensus         3 ~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~------~~-~~~~~~~~~~~~dlIila~p---   71 (171)
T d2g5ca2           3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID------EG-TTSIAKVEDFSPDFVMLSSP---   71 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS------EE-ESCGGGGGGTCCSEEEECSC---
T ss_pred             EEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch------hh-hhhhhhhhccccccccccCC---
Confidence            5999997 99999999999999876699999997532 1222221111      01 11122234568999999862   


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecC
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sN  164 (270)
                                   .+.+.++++.+..+. ++.+++-+++
T Consensus        72 -------------~~~~~~vl~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          72 -------------VRTFREIAKKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             -------------HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             -------------chhhhhhhhhhhcccccccccccccc
Confidence                         123455666666654 5666665553

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.29  E-value=4.9e-07  Score=74.08  Aligned_cols=105  Identities=11%  Similarity=0.056  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCH----HHHhCCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL----EDALTGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~----~~al~~ADvVIi~  121 (270)
                      ++||+|+||||++|++++..|+++++..+|+...+++....          +.+..  ...|+    +....++|.||++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~----------~~~~~--~~~d~~~~~~~~~~~~d~vi~~   69 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH----------PRLDN--PVGPLAELLPQLDGSIDTAFCC   69 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC----------TTEEC--CBSCHHHHGGGCCSCCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc----------ccccc--cccchhhhhhccccchheeeee
Confidence            35999999999999999999999998667776665432110          00000  00111    1223468999999


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +|..........++...|.....++++.+++.... .++.+|
T Consensus        70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~~i~~S  110 (212)
T d2a35a1          70 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVS  110 (212)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             eeeeccccccccccccchhhhhhhccccccccccc-cccccc
Confidence            87653222334566778888889999998875444 444454

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.8e-06  Score=72.00  Aligned_cols=165  Identities=10%  Similarity=0.066  Sum_probs=96.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCH------HHHhCCCCEEEEcC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL------EDALTGMDIVIIPA  122 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~------~~al~~ADvVIi~a  122 (270)
                      |.|+||+||||++++..|+++|+ .+|+.+|.-........+.+... ...   ....+.      ...+..+++|+++|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~i~~~a   76 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNI-ADY---MDKEDFLIQIMAGEEFGDVEAIFHEG   76 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCC-SEE---EEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccch-hhh---ccchHHHHHHhhhhcccchhhhhhhc
Confidence            78999999999999999999985 27999985432111112222111 000   000011      12346889999988


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCC-cHHHHHHHHHHhCCCCCCCeeeechhhHHHHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS-TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANT  201 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~-~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~  201 (270)
                      +...........+...|......+.+...+.+.. +++..|.-+.. .....   .....-.++...+|.+++....+..
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~v~~ss~~~~~~~~~~~---~~~~~~~~~~~~Y~~~K~~~e~~~~  152 (307)
T d1eq2a_          77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTSDF---IESREYEKPLNVYGYSKFLFDEYVR  152 (307)
T ss_dssp             SCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC-EEEEEEGGGGTTCCSCB---CSSGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccccc---cccccccccccccccccchhhhhcc
Confidence            7654444445556677788888888888876543 23222211100 00000   0000012334456777777888888


Q ss_pred             HHHHHhCCCCCccc-eEEEccC
Q 024248          202 FVAEVLGLDPREVD-VPVVGGH  222 (270)
Q Consensus       202 ~lA~~l~v~~~~v~-~~V~G~h  222 (270)
                      .+++..+++...++ ..|+|..
T Consensus       153 ~~~~~~~~~~~~~r~~~vyGp~  174 (307)
T d1eq2a_         153 QILPEANSQIVGFRYFNVYGPR  174 (307)
T ss_dssp             HHGGGCSSCEEEEEECEEESSS
T ss_pred             ccccccccccccccceeEeecc
Confidence            88888888877775 4899964

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.25  E-value=3.8e-06  Score=71.30  Aligned_cols=78  Identities=17%  Similarity=0.127  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--h-HHH---HhhccccCccee-eeeccCCHHHHhCCCCE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G-VTA---DISHMDTNAVVR-GFLGQQQLEDALTGMDI  117 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~-~~~---dl~~~~~~~~~~-~i~~t~d~~~al~~ADv  117 (270)
                      +++||.|+||+|++|++++..|+.+|+  +|++++++...  . ...   .+.+... ..+. .+....++.+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~v-~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLGA-KLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTTC-EEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhccCCc-EEEEeecccchhhhhhccCcch
Confidence            467999999999999999999999998  99999887531  1 111   1111110 0000 01112235567899999


Q ss_pred             EEEcCCCC
Q 024248          118 VIIPAGVP  125 (270)
Q Consensus       118 VIi~ag~~  125 (270)
                      ++.+++..
T Consensus        79 ~~~~~~~~   86 (312)
T d1qyda_          79 VISALAGG   86 (312)
T ss_dssp             EEECCCCS
T ss_pred             hhhhhhhc
Confidence            99987543

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=98.23  E-value=8.5e-06  Score=63.85  Aligned_cols=112  Identities=13%  Similarity=0.194  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-C-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g-~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      |||+|+||||++|.-+...|.... + ..++.++......++..++...  ...   .....+. +.++++|+||++.+ 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~--~~~---~~~~~~~-~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKD--AGM---LHDAFDI-ESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSC--CCB---CEETTCH-HHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCc--cee---eecccch-hhhccccEEEEecC-
Confidence            899999999999999998776533 2 2377777665433332211111  011   1112343 66899999999862 


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhh
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                                     -...+++++.+.+.+.+++|  +.|..+.             .++++-++++..+-
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf-------------R~~~dvpl~lPEiN  114 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL-------------RMDKEAIITLDPVN  114 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT-------------TTCTTEEEECHHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc-------------cccCCceEEeCCcC
Confidence                           13346788888877666655  6666663             25677778885443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.22  E-value=3.2e-06  Score=66.93  Aligned_cols=64  Identities=23%  Similarity=0.432  Sum_probs=49.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +||++||. |.+|+.+|..|++.|+  +|..||++...  ..++.....       ....++.++++.+|+|+++.
T Consensus         2 ~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~~--~~~~~~~~~-------~~~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           2 KQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQSA--VDGLVAAGA-------SAARSARDAVQGADVVISML   65 (162)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHTTC-------EECSSHHHHHTSCSEEEECC
T ss_pred             CEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchhh--hhhhhhhhc-------cccchhhhhccccCeeeecc
Confidence            38999997 9999999999999999  99999987432  233333211       12346788999999999986

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.22  E-value=7.5e-07  Score=75.17  Aligned_cols=88  Identities=22%  Similarity=0.215  Sum_probs=59.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEEcCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi~ag~  124 (270)
                      |||.|+||+||+|++++..|..+|+  +|+.+|+++.     |+.+..            ++++.++  +.|+||++++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~~------------~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNVL------------AVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCHH------------HHHHHHHHcCCCEEEeeccc
Confidence            8999999999999999999999999  9999998642     332221            2334444  67999999865


Q ss_pred             CCCCC--CchhhhHHhhHHHHHHHHHHHhHh
Q 024248          125 PRKPG--MTRDDLFNINAGIVKTLCEGIAKC  153 (270)
Q Consensus       125 ~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~  153 (270)
                      .....  .........|......+.+.....
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~   93 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSV   93 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cccccccccchhhcccccccccccccccccc
Confidence            42110  112333455666666666666554

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.20  E-value=1.1e-06  Score=69.13  Aligned_cols=65  Identities=17%  Similarity=0.271  Sum_probs=49.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||++||+ |.+|++++..|+..++  +++++|++.+.  ..++....   .   +..+.+.++++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~--~~~l~~~~---g---~~~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL---A---LPYAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH---T---CCBCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHh--HHhhcccc---c---eeeechhhhhhhccceeeeec
Confidence            89999997 9999999999998888  99999987432  22232110   0   123457888999999999986

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.10  E-value=2.7e-05  Score=59.18  Aligned_cols=98  Identities=19%  Similarity=0.144  Sum_probs=60.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeec-cCC---HHHH-hCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-LTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~-t~d---~~~a-l~~ADvVIi~  121 (270)
                      |||.|+|+ |.+|..++..|...|+  +|+++|.++....  .+.... .  ...+.+ .+|   ++++ +++||.++.+
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~~~--~~~~~~-~--~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDICK--KASAEI-D--ALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHC-S--SEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhhhh--hhhhhh-h--hhhccCcccchhhhhhcChhhhhhhccc
Confidence            89999998 9999999999999999  9999999864221  121110 0  011111 112   3333 6899999887


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      ...         +  ..|+.    ++..+++++++.++..+.+|..
T Consensus        73 t~~---------d--~~N~~----~~~~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          73 TGK---------E--EVNLM----SSLLAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             CSC---------H--HHHHH----HHHHHHHTTCCCEEEECSSTTH
T ss_pred             CCc---------H--HHHHH----HHHHHHHcCCceEEEEecCHHH
Confidence            421         1  34542    3334455677766655666654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=98.05  E-value=1.1e-05  Score=67.57  Aligned_cols=76  Identities=20%  Similarity=0.217  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---h-HHH---HhhccccCccee-eeeccCCHHHHhCCCCE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---G-VTA---DISHMDTNAVVR-GFLGQQQLEDALTGMDI  117 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~-~~~---dl~~~~~~~~~~-~i~~t~d~~~al~~ADv  117 (270)
                      ++||+|+||+|++|++++..|+..|+  +|++++++...   . ...   ++..... ..+. .+....+..++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASGA-NIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTTC-EEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhccCCc-EEEEeecccchhhhhhhhhcee
Confidence            46999999999999999999999998  99999987531   1 111   1111100 0000 01111234567889999


Q ss_pred             EEEcCCC
Q 024248          118 VIIPAGV  124 (270)
Q Consensus       118 VIi~ag~  124 (270)
                      |+.+++.
T Consensus        80 vi~~~~~   86 (307)
T d1qyca_          80 VISTVGS   86 (307)
T ss_dssp             EEECCCG
T ss_pred             eeecccc
Confidence            9988753

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.04  E-value=3.3e-06  Score=66.06  Aligned_cols=64  Identities=16%  Similarity=0.188  Sum_probs=47.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||+|||. |.+|+.++..|+++|+  +|+.+|+........ .....   .   +  ..+.++++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~---~---~--~~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV---G---V--TETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH---T---C--EECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc---c---c--cccHHHHHhhcCeEEEEe
Confidence            89999997 9999999999999999  999999876432111 11110   0   0  124568899999999986

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.00  E-value=8.1e-05  Score=64.81  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeec--cC---CHHHHhCCCCEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--QQ---QLEDALTGMDIVI  119 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~--t~---d~~~al~~ADvVI  119 (270)
                      ++++|+|+||+|++|++++..|+++|+  +|+++-++........+...   ..+..+..  ++   .++.++.++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhccc---CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            345899999999999999999999999  99999886543222222211   11111111  11   1456789999988


Q ss_pred             EcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       120 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +......          ..+....+.++++..+.+-..+++..|
T Consensus        77 ~~~~~~~----------~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQA----------GDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCSTT----------SCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eeccccc----------chhhhhhhHHHHHHHHhCCCceEEEee
Confidence            8643211          224455567788877765444554444

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.1e-05  Score=61.41  Aligned_cols=96  Identities=14%  Similarity=0.167  Sum_probs=59.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~--~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      ||+|+||||+||+.+...|+.+..  ..+++++......+.........  ...   ....+. +++.++|++|++++  
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~---~~~~~~-~~~~~~DivF~a~~--   74 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTL---QDAFDL-EALKALDIIVTCQG--   74 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBC---EETTCH-HHHHTCSEEEECSC--
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eee---ecccch-hhhhcCcEEEEecC--
Confidence            899999999999999977666532  34888887655332221121111  111   112243 56899999999873  


Q ss_pred             CCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       126 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                                    .+..+++++.+.+...+++|  ++|..+
T Consensus        75 --------------~~~s~~~~~~~~~~g~~~~V--ID~Ss~  100 (146)
T d1t4ba1          75 --------------GDYTNEIYPKLRESGWQGYW--IDAASS  100 (146)
T ss_dssp             --------------HHHHHHHHHHHHHTTCCCEE--EECSST
T ss_pred             --------------chHHHHhhHHHHhcCCCeec--ccCCcc
Confidence                          23346777777765555544  666665

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.98  E-value=1.9e-05  Score=63.01  Aligned_cols=35  Identities=20%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .|||+|||. |.+|+.++..|+..|+  +|..||++++
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~   35 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYS   35 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHH
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHH
Confidence            489999997 9999999999999999  9999999754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.95  E-value=2.7e-05  Score=62.16  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc-CcceeeeeccCCHHHHhCCCCEEEEcCCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~-~~~~~~i~~t~d~~~al~~ADvVIi~ag~~~  126 (270)
                      +|++||. |.+|+.+|..|++.|+  +|+.||+++++  ..++..... ...........++.+++.++|.++++.... 
T Consensus         4 nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~-   77 (176)
T d2pgda2           4 DIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG-   77 (176)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTT-
T ss_pred             cEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHhccccccccchhhhhhhhhhhcccceEEEecCch-
Confidence            7999998 9999999999999999  99999998643  223332211 111111111234567789999999985211 


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEec
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~s  163 (270)
                                    +.+.++.+.+.... ++.++|..|
T Consensus        78 --------------~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          78 --------------QAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             --------------HHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             --------------HHHHHHHHHHHhccccCcEEEecC
Confidence                          22334445555444 556666555

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.94  E-value=4.1e-06  Score=65.53  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=45.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g-~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |||++||+ |.+|++++..|+..+ +  +|.++|++++..  ..+....   .+   ...++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~--~i~v~~r~~~~~--~~l~~~~---~~---~~~~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEKR--ERLEKEL---GV---ETSATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHHH--HHHHHHT---CC---EEESSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCC--cEEEEeCChhHH--HHhhhhc---cc---cccccc-ccccccceEEEec
Confidence            89999998 999999998877666 5  999999975422  2232210   11   123344 4588999999986

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=9.1e-05  Score=62.61  Aligned_cols=159  Identities=16%  Similarity=0.160  Sum_probs=91.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC----------HHHHhCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ----------LEDALTG  114 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d----------~~~al~~  114 (270)
                      .+.|+||++-+|..+|..|+++|.  .|++.|+++...  .+.++........+..+. .-++          ..+.+..
T Consensus        12 v~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~   89 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG   89 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            588999999999999999999999  999999975321  223343321111111110 0111          2233567


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhh----HHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N----~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .|++|..||......   .+   ....+..|    +...+.+++.+++.. .++.|++++.....            .+.
T Consensus        90 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~------------~~~  157 (257)
T d1xg5a_          90 VDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH------------RVL  157 (257)
T ss_dssp             CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT------------SCC
T ss_pred             CCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhc------------CCC
Confidence            899999998653221   11   12234445    344566677766655 35777777644331            012


Q ss_pred             CCCC--eeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKR--LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~k--viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      |...  .++.++-.-..|-+.||..+...+..|++.++.
T Consensus       158 p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~  196 (257)
T d1xg5a_         158 PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCIS  196 (257)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEe
Confidence            2111  134444444557788888875555677776665

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=4.9e-05  Score=57.48  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHH-hCCCCEEEEcCCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-LTGMDIVIIPAGVPR  126 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~a-l~~ADvVIi~ag~~~  126 (270)
                      |++|+|+ |.+|..++..|...|+  +|+++|.+++.  +.++.+......+-.......++++ +.+||.||++.+.. 
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~~--~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~-   75 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEK--VNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN-   75 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHH--HHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC-
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHHH--HHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch-
Confidence            6899998 9999999999999999  99999998542  2223222110000000111224444 78999998876311 


Q ss_pred             CCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       127 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                                ..|    ..++..+++..|...++.-++
T Consensus        76 ----------~~~----~~~~~~~~~~~~~~~iiar~~   99 (134)
T d2hmva1          76 ----------IQA----STLTTLLLKELDIPNIWVKAQ   99 (134)
T ss_dssp             ----------HHH----HHHHHHHHHHTTCSEEEEECC
T ss_pred             ----------HHh----HHHHHHHHHHcCCCcEEeecc
Confidence                      112    224445555667666655443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.85  E-value=4.4e-05  Score=59.18  Aligned_cols=52  Identities=21%  Similarity=0.395  Sum_probs=42.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +||+|||+.|.+|..++..|.+.|+  +|.++|++...                      ..++.+.++|+++.+.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~~   61 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSV   61 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhcccccccc
Confidence            4999999559999999999999999  99999986421                      1235578999999875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.79  E-value=1.9e-05  Score=63.90  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=55.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhcccc-CcceeeeeccCCHHHHhCCCCEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDT-NAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~-~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      ..+..+|.|+||+|.+|..++..|++.|.  +|+++|++.++..  ...+..... ....-.+....+.++++.++|+||
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence            34556899999999999999999999998  9999999864321  122221100 011111222335677899999999


Q ss_pred             EcCCCC
Q 024248          120 IPAGVP  125 (270)
Q Consensus       120 i~ag~~  125 (270)
                      .++|.+
T Consensus        98 n~Ag~g  103 (191)
T d1luaa1          98 TAGAIG  103 (191)
T ss_dssp             ECCCTT
T ss_pred             ecCccc
Confidence            998864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.74  E-value=5.2e-05  Score=63.95  Aligned_cols=158  Identities=15%  Similarity=0.061  Sum_probs=90.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC----------HHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d----------~~~al~  113 (270)
                      +.+.|+||++-+|..++..|++.|.  .|++.|++++..  ...++....   .+..+. .-+|          ..+.+-
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTPD---QIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCC---cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4688889999999999999999999  999999975422  122232111   111110 0111          123356


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .-|++|..||......   .+.   ...+..|+..    .+.+++.+.+....+.|+++|.....            .+.
T Consensus        82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~------------~~~  149 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGF------------VGD  149 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGT------------SCC
T ss_pred             CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecccee------------ccC
Confidence            7899999998753221   122   2345556544    45555666554445577777643321            123


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      |..-.++.++-.-..|-+.+|..+.+.+..|++..+-.
T Consensus       150 ~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~P  187 (251)
T d1zk4a1         150 PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHP  187 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred             CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeC
Confidence            32223455544444566777777555566776655543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00018  Score=60.24  Aligned_cols=157  Identities=17%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHH---HhCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLED---ALTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~---al~~ADvVIi  120 (270)
                      .+++.|+||++-+|..+|..|++.|.  +|++.|++++..  ...++....  ...-.+....+.++   .+..-|++|.
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~--~~~~Dv~d~~~v~~~~~~~g~iDilVn   82 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIE--PVCVDLGDWEATERALGSVGPVDLLVN   82 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE--EEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCe--EEEEeCCCHHHHHHHHHHhCCceEEEe
Confidence            35799999999999999999999999  999999975321  112222110  00000111111222   3457899999


Q ss_pred             cCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          121 PAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       121 ~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      .||......   .+   ....+..|+.    ..+.+++.+.+....+.+++++.-...            .+.|..-.++
T Consensus        83 nAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~------------~~~~~~~~Y~  150 (244)
T d1pr9a_          83 NAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQ------------RAVTNHSVYC  150 (244)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT------------SCCTTBHHHH
T ss_pred             ccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccc------------ccccchhhhh
Confidence            998754221   11   2233455554    445556655444455667766643221            1233333355


Q ss_pred             echhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .++-.-..+-+.+|.+++  +..|++..+-
T Consensus       151 asKaal~~lt~~lA~el~--~~gIrvN~I~  178 (244)
T d1pr9a_         151 STKGALDMLTKVMALELG--PHKIRVNAVN  178 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHhC--CCcEEEEEEe
Confidence            554444567788888875  5567666554

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.71  E-value=1.3e-05  Score=62.48  Aligned_cols=71  Identities=21%  Similarity=0.364  Sum_probs=44.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ++|||+|+||||++|.-+...|.++++ ..++.++......|+.....    ...+.. . ..+ .+.+.++|++|+++
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~----~~~~~~-~-~~~-~~~~~~~d~vf~a~   72 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA----ESSLRV-G-DVD-SFDFSSVGLAFFAA   72 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET----TEEEEC-E-EGG-GCCGGGCSEEEECS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeec----cccchh-c-cch-hhhhccceEEEecC
Confidence            468999999999999999998876443 23888886654433321111    111111 1 111 24467899999986

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=0.00026  Score=59.19  Aligned_cols=158  Identities=17%  Similarity=0.171  Sum_probs=88.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHH---hCCCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDA---LTGMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~a---l~~ADvVIi  120 (270)
                      .+++.|+||++-+|..++..|++.|.  +|++.|++++..  ...++....  ...-.+...++.+++   +..-|++|.
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~--~~~~Dv~~~~~v~~~~~~~g~iDilVn   80 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE--PVCVDLGDWDATEKALGGIGPVDLLVN   80 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE--EEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe--EEEEeCCCHHHHHHHHHHcCCCeEEEE
Confidence            35789999999999999999999999  999999975321  112221110  000001111112223   357899999


Q ss_pred             cCCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeee
Q 024248          121 PAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (270)
Q Consensus       121 ~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG  190 (270)
                      .||......   .+   ....+..|+..    .+.+++.+.+....+.+|+++.....            .+.|..-.++
T Consensus        81 nAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~------------~~~~~~~~Y~  148 (242)
T d1cyda_          81 NAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAH------------VTFPNLITYS  148 (242)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT------------SCCTTBHHHH
T ss_pred             CCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhcc------------ccCCcccccc
Confidence            998753221   11   12234555544    34455554444455667766643221            1222222344


Q ss_pred             echhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       191 ~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .++-.-..+-+.+|.+++  +..|++..+-.
T Consensus       149 asKaal~~lt~~lA~e~~--~~gIrvN~I~P  177 (242)
T d1cyda_         149 STKGAMTMLTKAMAMELG--PHKIRVNSVNP  177 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             chHHHHHHHHHHHHHHhC--ccCeecccCCC
Confidence            544444567788888874  55676666554

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=5.2e-05  Score=63.02  Aligned_cols=158  Identities=15%  Similarity=0.075  Sum_probs=86.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeee-eccCCHHHHh--CCCCEEEEcCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGF-LGQQQLEDAL--TGMDIVIIPAG  123 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i-~~t~d~~~al--~~ADvVIi~ag  123 (270)
                      ||.|+||+|-+|..++..|++.|.  +|+++|+++... ...-....+. ...... .......+.+  ..-|++|..||
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~iD~linnAG   80 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNK-NWTEQEQSILEQTASSLQGSQVDGVFCVAG   80 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTS-CHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCchhcccccceecccc-CchhHHHHHHHHHHHHhcCCCeeEEEECCc
Confidence            899999999999999999999998  999999976311 0000000000 000000 0000112222  34699999998


Q ss_pred             CCCC--C-CCc----hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhh
Q 024248          124 VPRK--P-GMT----RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (270)
Q Consensus       124 ~~~~--~-g~~----r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ld  195 (270)
                      ....  + ..+    ....+..|+.....+++.+..+- +.+.|+++|.....            .+.|..-.|+.++-.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~------------~~~~~~~~Y~asKaa  148 (235)
T d1ooea_          81 GWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM------------GPTPSMIGYGMAKAA  148 (235)
T ss_dssp             CCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHHHHHHHH
T ss_pred             ccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc------------CCcccccchHHHHHH
Confidence            5321  1 111    12235666655555555554443 34677776643221            123322234455555


Q ss_pred             HHHHHHHHHHHhCCCCCccceEEEc
Q 024248          196 VVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       196 t~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -..|-+.+|.+++-.+..+++..+.
T Consensus       149 l~~l~~~la~e~~~~~~~i~v~~i~  173 (235)
T d1ooea_         149 VHHLTSSLAAKDSGLPDNSAVLTIM  173 (235)
T ss_dssp             HHHHHHHHHSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHhccCCCceEEEEEe
Confidence            5567788888877556677765554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.60  E-value=3.6e-05  Score=60.20  Aligned_cols=71  Identities=14%  Similarity=0.119  Sum_probs=46.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceee--eeccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~--i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .||+|+|| |.+|.++|..|.+.|+  +|+++|++...  +.++...........  .......++.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~~--a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLES--AKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHHH--HHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChHH--HHHHHhcccccccccccccchhhhHhhhhccceeEeec
Confidence            48999998 9999999999999999  99999998543  233333211110000  001113455678899888764

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.60  E-value=3.9e-05  Score=61.87  Aligned_cols=76  Identities=16%  Similarity=0.203  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHH-HhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~-dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +++||+|+||||++|.-+..+|...+.+ |+..+-.+...|+.. +............+  ....++.+.++|+||.+..
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dvvf~alp   80 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNL--VAVKDADFSNVDAVFCCLP   80 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCC--BCGGGCCGGGCSEEEECCS
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccc--hhhhhhhhcccceeeeccc
Confidence            4679999999999999999999988766 666665544333221 11111000011101  1112344679999999863

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.58  E-value=0.00015  Score=57.66  Aligned_cols=116  Identities=17%  Similarity=0.219  Sum_probs=71.5

Q ss_pred             ccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HHHhhccccCcceeeeeccCC
Q 024248           29 ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLGQQQ  107 (270)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~dl~~~~~~~~~~~i~~t~d  107 (270)
                      +.++........ .+.++-||+|+|+ |.+|..-+..++..|-  +|..+|.+.+..+ ..+....  ..... ......
T Consensus        16 ~~gG~G~Llgg~-~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~--~~~~~-~~~~~~   88 (168)
T d1pjca1          16 QQGGRGVLLGGV-PGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS--RVELL-YSNSAE   88 (168)
T ss_dssp             GGTSCCCCTTCB-TTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG--GSEEE-ECCHHH
T ss_pred             hcCCcEEEecCC-CCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcc--cceee-hhhhhh
Confidence            344444444444 3577889999998 9999999988888887  9999999754221 1111111  11111 122335


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       108 ~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +++.+++||+||-++-.|.+...-   +      +.++.++.++   |..+++=++
T Consensus        89 l~~~~~~aDivI~aalipG~~aP~---l------It~~mv~~Mk---~GSVIVDva  132 (168)
T d1pjca1          89 IETAVAEADLLIGAVLVPGRRAPI---L------VPASLVEQMR---TGSVIVDVA  132 (168)
T ss_dssp             HHHHHHTCSEEEECCCCTTSSCCC---C------BCHHHHTTSC---TTCEEEETT
T ss_pred             HHHhhccCcEEEEeeecCCcccCe---e------ecHHHHhhcC---CCcEEEEee
Confidence            778899999999998766433221   1      1244455544   677776555

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=8.5e-05  Score=61.82  Aligned_cols=160  Identities=14%  Similarity=0.066  Sum_probs=89.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHH-hhcccc-Cc-ceeeeeccCCHHHHhC--CCCEEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-ISHMDT-NA-VVRGFLGQQQLEDALT--GMDIVII  120 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~d-l~~~~~-~~-~~~~i~~t~d~~~al~--~ADvVIi  120 (270)
                      .++|.|+||+|-+|..++..|+++|.  +|+++|+++....... ..+.+. .. ....+  .....+.+.  ..|++|.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCCceEEEE
Confidence            45899999999999999999999999  9999999753110000 000000 00 00000  001122222  4799999


Q ss_pred             cCCCCC--CC-CCc----hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          121 PAGVPR--KP-GMT----RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       121 ~ag~~~--~~-g~~----r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      .||...  .. ...    ....+..|+.....+++.+.++- ..+.|+++|.-...            .+.|..-.++.+
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~------------~~~~~~~~Y~as  145 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL------------DGTPGMIGYGMA  145 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHHHHH
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc------------CCccCCcccHHH
Confidence            988522  11 111    12245667666666666655443 35677776643220            123322234555


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      +-.-..|-+.+|.+++-.+..|++..+..
T Consensus       146 Kaal~~lt~~la~El~~~~~gI~vn~v~P  174 (236)
T d1dhra_         146 KGAVHQLCQSLAGKNSGMPSGAAAIAVLP  174 (236)
T ss_dssp             HHHHHHHHHHHTSTTSSCCTTCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccCCCcEEEEEEEe
Confidence            54445677778877765567787777664

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=0.00031  Score=58.70  Aligned_cols=156  Identities=17%  Similarity=0.097  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCC-------HHHHhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQ-------LEDALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d-------~~~al~~AD  116 (270)
                      .+++.|+||++-+|..++..|++.|.  +|++.|+++...+  ..++........   +....+       ..+.+..-|
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~D---v~~~~~v~~~~~~~~~~~g~iD   79 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMD---VADPASVERGFAEALAHLGRLD   79 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECC---TTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEe---cCCHHHHHHHHHHHHHhcCCce
Confidence            34789999999999999999999999  9999999753211  111110000000   000011       123345789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh---CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      ++|..||......   .+   ....+..|+.....+.+.+.+.   ...+.+++.|. ...            .+.|..-
T Consensus        80 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss-~~~------------~~~~~~~  146 (242)
T d1ulsa_          80 GVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS-RVY------------LGNLGQA  146 (242)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC-GGG------------GCCTTCH
T ss_pred             EEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecc-ccc------------cCCCCCc
Confidence            9999998754221   11   2334566665554444443332   22344544442 110            1344333


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .++.++-.-..|-+.+|.+++  +..|++..+-.
T Consensus       147 ~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~P  178 (242)
T d1ulsa_         147 NYAASMAGVVGLTRTLALELG--RWGIRVNTLAP  178 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHh--hhCcEEEEEee
Confidence            455554444557788888874  45676666653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.56  E-value=3.1e-05  Score=60.72  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=32.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      |||+|+||+|.+|.++|..|+..|+  +|++++++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            8999997679999999999999999  9999999864

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=0.00015  Score=58.44  Aligned_cols=106  Identities=23%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             cccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHH
Q 024248           30 SSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLE  109 (270)
Q Consensus        30 ~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~  109 (270)
                      .+-|.+..... .....++|+|+|. |.+|..++..+...|.  +|..+|.........+...           ...+++
T Consensus        29 ~~~W~~~~~~~-~~l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~~-----------~~~~l~   93 (184)
T d1ygya1          29 EHTWKRSSFSG-TEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLGI-----------ELLSLD   93 (184)
T ss_dssp             TTCCCGGGCCB-CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHTC-----------EECCHH
T ss_pred             hCCCCcccccc-ccccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcCc-----------eeccHH
Confidence            34566543332 2345569999998 9999999999988888  9999998654332222211           113678


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       110 ~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +.++.||+|+++.....   .++ .++  |    ++.+.   ...|++++|+++
T Consensus        94 ell~~sDiv~~~~Plt~---~T~-~li--n----~~~l~---~mk~~a~lIN~s  134 (184)
T d1ygya1          94 DLLARADFISVHLPKTP---ETA-GLI--D----KEALA---KTKPGVIIVNAA  134 (184)
T ss_dssp             HHHHHCSEEEECCCCST---TTT-TCB--C----HHHHT---TSCTTEEEEECS
T ss_pred             HHHhhCCEEEEcCCCCc---hhh-hhh--h----HHHHh---hhCCCceEEEec
Confidence            89999999999863221   111 111  2    22223   334789999998

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.55  E-value=0.00061  Score=57.11  Aligned_cols=156  Identities=20%  Similarity=0.234  Sum_probs=89.3

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC----------HHHHhC
Q 024248           48 KV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (270)
Q Consensus        48 KI-~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d----------~~~al~  113 (270)
                      || .|+||++-+|..+|..|+++|.  .|++.|++++..  ...++.+..  .....+. .-+|          ..+.+-
T Consensus         2 KValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            76 6789999999999999999999  999999986422  223343221  1111000 0111          122346


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .-|++|..||......   .+   ....+..|+...    +.+++.+.+....+.|+++|.....            .+.
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------------~~~  145 (255)
T d1gega_          78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH------------VGN  145 (255)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT------------SCC
T ss_pred             CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc------------ccC
Confidence            7999999998753221   11   223455665444    4555556666666777766643221            022


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      |..-.++.++-.-..+-+.+|.+++  +..|++..+-.
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~P  181 (255)
T d1gega_         146 PELAVYSSSKFAVRGLTQTAARDLA--PLGITVNGYCP  181 (255)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             cccccchhCHHHHHhhHHHHHHHhh--hhCcEEEEEec
Confidence            2222244444444557788888875  55676655553

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.54  E-value=0.00021  Score=57.87  Aligned_cols=96  Identities=20%  Similarity=0.184  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ..+..+|+|+|. |.||+.++..+...|.  ++..+|..............         ....++++.++.||+|++..
T Consensus        44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~~---------~~~~~l~~ll~~sD~v~l~~  111 (191)
T d1gdha1          44 KLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQA---------TFHDSLDSLLSVSQFFSLNA  111 (191)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHTC---------EECSSHHHHHHHCSEEEECC
T ss_pred             eecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhcccc---------cccCCHHHHHhhCCeEEecC
Confidence            345679999998 9999999999998888  99999986542221111111         12346888999999999976


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....   .++ .++  |    ++.++.+   .|++++||++
T Consensus       112 plt~---~T~-~li--~----~~~l~~m---k~~a~lIN~s  139 (191)
T d1gdha1         112 PSTP---ETR-YFF--N----KATIKSL---PQGAIVVNTA  139 (191)
T ss_dssp             CCCT---TTT-TCB--S----HHHHTTS---CTTEEEEECS
T ss_pred             CCCc---hHh-hee--c----HHHhhCc---CCccEEEecC
Confidence            3221   111 111  2    2233333   3788999987

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.51  E-value=0.00018  Score=60.56  Aligned_cols=157  Identities=16%  Similarity=0.151  Sum_probs=88.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCH-------HHHhCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQL-------EDALTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~-------~~al~~ADv  117 (270)
                      +.+.|+||++-+|..+|..|++.|.  +|++.|++++..  ...++... .....-.+....+.       .+.+-..|+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~-~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGPA-ACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCTT-EEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCc-eEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            4688999999999999999999998  999999975321  22233211 00000001101111       223457899


Q ss_pred             EEEcCCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          118 VIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       118 VIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      +|..||......   .+   ....+..|+..    .+.+++.+.+....+.|+++|.....            .+.|..-
T Consensus        83 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~------------~~~~~~~  150 (256)
T d1k2wa_          83 LVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGR------------RGEALVG  150 (256)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT------------SCCTTCH
T ss_pred             EEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhc------------ccccccc
Confidence            999998653221   11   22345566543    34555555554555777777643321            1223222


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .++.++-.-..|-+.+|.+++  +..|++..+-
T Consensus       151 ~Y~asKaal~~lt~~lA~el~--~~gIrVN~V~  181 (256)
T d1k2wa_         151 VYCATKAAVISLTQSAGLNLI--RHGINVNAIA  181 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             chhhhhhHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            344444444567788888875  4556655554

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.51  E-value=0.00015  Score=58.93  Aligned_cols=94  Identities=22%  Similarity=0.312  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|+|. |.||..++..+...|.  +|..+|............          +....++++.++.||+|++...
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~----------~~~~~~l~~ll~~sD~i~~~~p  113 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG----------LQRVSTLQDLLFHSDCVTLHCG  113 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT----------CEECSSHHHHHHHCSEEEECCC
T ss_pred             eeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc----------cccccchhhccccCCEEEEeec
Confidence            45569999998 9999999999998898  999999865322211111          0123478888999999999864


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ....   ++ .+  -|    ++.+.   ...|++++||++
T Consensus       114 lt~~---T~-~l--i~----~~~l~---~mk~~a~lIN~s  140 (193)
T d1mx3a1         114 LNEH---NH-HL--IN----DFTVK---QMRQGAFLVNTA  140 (193)
T ss_dssp             CCTT---CT-TS--BS----HHHHT---TSCTTEEEEECS
T ss_pred             cccc---ch-hh--hh----HHHHh---ccCCCCeEEecC
Confidence            3211   11 11  12    22222   234789999987

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.48  E-value=0.00045  Score=58.35  Aligned_cols=159  Identities=18%  Similarity=0.179  Sum_probs=87.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCccee-eeeccCCH-------HHHhCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVR-GFLGQQQL-------EDALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~-~i~~t~d~-------~~al~~A  115 (270)
                      .+.+.|+||++-+|..+|..|++.|.  +|++.|++++..  ...++........+. .+....+.       .+.+...
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   83 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence            34688899999999999999999998  999999976422  222333211100000 01111112       1234578


Q ss_pred             CEEEEcCCCCCCC-----CCc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          116 DIVIIPAGVPRKP-----GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       116 DvVIi~ag~~~~~-----g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      |++|..||.....     ..+   ....+..|+..    .+.+++.+.+. ..+.+++++.....           ..+.
T Consensus        84 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~ii~iss~~~~-----------~~~~  151 (268)
T d2bgka1          84 DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA-KKGSIVFTASISSF-----------TAGE  151 (268)
T ss_dssp             CEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-TCEEEEEECCGGGT-----------CCCT
T ss_pred             ceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc-CCCCcccccccccc-----------cccc
Confidence            9999999864321     111   12234556544    45555555543 34556655543221           0111


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +..-.++.++-.-..+-+.+|.+++  +..|++..+.
T Consensus       152 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  186 (268)
T d2bgka1         152 GVSHVYTATKHAVLGLTTSLCTELG--EYGIRVNCVS  186 (268)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ccccccchhHHHHHhCHHHHHHHhC--hhCeEEEecC
Confidence            1112355555455567888888875  4556665554

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.48  E-value=0.00051  Score=56.87  Aligned_cols=155  Identities=15%  Similarity=0.108  Sum_probs=85.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +.+++.|+||++-+|..++..|++.|.  +|++.|++++..  .+..+......+..  ..+...+.+...|++|..||.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~~l--~~~~~~~~~~Dv~~--~~~~~~~~~g~iD~lVnnAG~   76 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEELL--KRSGHRYVVCDLRK--DLDLLFEKVKEVDILVLNAGG   76 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHTCSEEEECCTTT--CHHHHHHHSCCCSEEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HhcCCcEEEcchHH--HHHHHHHHhCCCcEEEecccc
Confidence            456899999999999999999999999  999999975321  11111000000000  001133456789999999987


Q ss_pred             CCCCC---Cch---hhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechh
Q 024248          125 PRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (270)
Q Consensus       125 ~~~~g---~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~l  194 (270)
                      +....   .+.   ...+..|+.    ..+.+++.+++. ..+.+++++.....            .+.+..-.++.++-
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~G~ii~i~S~~~~------------~~~~~~~~Y~asKa  143 (234)
T d1o5ia_          77 PKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITSFSVI------------SPIENLYTSNSARM  143 (234)
T ss_dssp             CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SCCTTBHHHHHHHH
T ss_pred             cCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc-cccccccccccccc------------ccccccccchhHHH
Confidence            54221   111   223445544    455666666654 34555555532210            11222222333333


Q ss_pred             hHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          195 DVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       195 dt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .-..|-+.+|.+++  +..|++.++-
T Consensus       144 al~~ltk~lA~ela--~~gIrVN~I~  167 (234)
T d1o5ia_         144 ALTGFLKTLSFEVA--PYGITVNCVA  167 (234)
T ss_dssp             HHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHhc--ccCeEEeecc
Confidence            33456778888874  4456554443

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.48  E-value=0.00011  Score=59.04  Aligned_cols=74  Identities=16%  Similarity=0.183  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      +||+|+||||++|.-+..+|...+.+ ||..+-.+...++..+-.+....... .+ ...+.++..+++|+||.+.+
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~-~~-~~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENS-IL-SEFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCC-BC-BCCCHHHHHHHCSEEEECCS
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhccc-cc-cccCHhHhccccceEEEccc
Confidence            59999999999999999999988766 55555443333322211111111110 01 12356566678999999863

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.0024  Score=54.78  Aligned_cols=166  Identities=13%  Similarity=0.062  Sum_probs=92.3

Q ss_pred             ccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccc---cCcceeeee-ccCC---
Q 024248           37 DCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMD---TNAVVRGFL-GQQQ---  107 (270)
Q Consensus        37 ~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~---~~~~~~~i~-~t~d---  107 (270)
                      ++.+|+.=+...+.|+||++-+|..+|..|+..|.  .|++.|++.+.  ..+.++....   ....+..+. .-+|   
T Consensus         3 ~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~   80 (297)
T d1yxma1           3 SYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEE   80 (297)
T ss_dssp             CSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHH
T ss_pred             CCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHH
Confidence            45565545556899999999999999999999999  99999998642  2233343210   011111110 0112   


Q ss_pred             H-------HHHhCCCCEEEEcCCCCCCCCC---c---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcH
Q 024248          108 L-------EDALTGMDIVIIPAGVPRKPGM---T---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTV  170 (270)
Q Consensus       108 ~-------~~al~~ADvVIi~ag~~~~~g~---~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~  170 (270)
                      .       .+.+..-|++|..||.......   +   ....+..|+...    +.+++.+.+.. .+.++++|.....  
T Consensus        81 v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss~~~~--  157 (297)
T d1yxma1          81 VNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKA--  157 (297)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTT--
T ss_pred             HHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-ccccccccccccc--
Confidence            1       1234578999999986532211   1   223455665544    44444444432 3445555543221  


Q ss_pred             HHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          171 PIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       171 ~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                                 ++|..-.++.++-.-..|-+.+|..++  +..|++.++-
T Consensus       158 -----------~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  194 (297)
T d1yxma1         158 -----------GFPLAVHSGAARAGVYNLTKSLALEWA--CSGIRINCVA  194 (297)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             -----------cccccccchhHHHHHHHHHHHHHHHhc--ccCceEEEee
Confidence                       233222344444444567788888874  4556555444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00012  Score=52.27  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      ..||+|+|. |..|.++|..|..+|.  +|.++|.+.......++.+.   ..+  +... ..++.+.++|+||++-|.+
T Consensus         5 ~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~~---~~~--~~~~-~~~~~~~~~d~vi~SPGi~   75 (93)
T d2jfga1           5 GKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPEA---VER--HTGS-LNDEWLMAADLIVASPGIA   75 (93)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCTT---SCE--EESB-CCHHHHHHCSEEEECTTSC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhhc---cce--eecc-cchhhhccCCEEEECCCCC
Confidence            458999998 9999999999999998  99999986542222222211   111  1111 2235678999999998776


Q ss_pred             C
Q 024248          126 R  126 (270)
Q Consensus       126 ~  126 (270)
                      .
T Consensus        76 ~   76 (93)
T d2jfga1          76 L   76 (93)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=0.00028  Score=59.17  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=88.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCC-------HHHHhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQ-------LEDALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d-------~~~al~~AD  116 (270)
                      .+.+.|+||++-+|..+|..|++.|.  +|++.|+++...  ...++........ -.+...++       ..+.+...|
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAARYVH-LDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGEEEEE-CCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcceEEE-eecCCHHHHHHHHHHHHHHhCCCe
Confidence            34688889999999999999999999  999999986422  2223322100000 00000111       123346789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ++|..||......   .+   ..+.+..|+...    +.+++.+.+. ..+.||++|.....            .+.|..
T Consensus        83 ilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~------------~~~~~~  149 (244)
T d1nffa_          83 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGL------------AGTVAC  149 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SCCTTB
T ss_pred             EEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEeccccccc------------cccccc
Confidence            9999998653211   11   223455565443    4455555543 45677777644331            123322


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -.++.++-.-..|-+.+|.+++  +..|++..+-
T Consensus       150 ~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  181 (244)
T d1nffa_         150 HGYTATKFAVRGLTKSTALELG--PSGIRVNSIH  181 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHHHhc--ccCEEEEEEe
Confidence            2345554444567788888874  4556655554

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.41  E-value=0.00036  Score=56.19  Aligned_cols=95  Identities=18%  Similarity=0.171  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      .-..++|+|+|. |.+|..++..+...|.  +|..+|+..... ...+..          +....++++.+++||+|++.
T Consensus        41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~----------~~~~~~l~~~l~~sD~v~~~  107 (188)
T d2naca1          41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN----------LTWHATREDMYPVCDVVTLN  107 (188)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT----------CEECSSHHHHGGGCSEEEEC
T ss_pred             eccccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc----------ccccCCHHHHHHhccchhhc
Confidence            345679999998 9999999999988888  999999865321 111111          01234788899999999998


Q ss_pred             CCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       122 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      .....   .++ .++  |    .+.++.   ..+++++||++
T Consensus       108 ~plt~---~T~-~li--~----~~~l~~---mk~ga~lIN~a  136 (188)
T d2naca1         108 CPLHP---ETE-HMI--N----DETLKL---FKRGAYIVNTA  136 (188)
T ss_dssp             SCCCT---TTT-TCB--S----HHHHTT---SCTTEEEEECS
T ss_pred             ccccc---cch-hhh--H----HHHHHh---CCCCCEEEecC
Confidence            64321   111 111  2    222333   34788999987

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.40  E-value=9.7e-05  Score=60.34  Aligned_cols=91  Identities=23%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|+|. |.||+.++..+...|.  +|..||........         ....    ..++++.++.||+|++...
T Consensus        43 l~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~---------~~~~----~~~l~~l~~~~D~v~~~~p  106 (199)
T d1dxya1          43 LGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGDH---------PDFD----YVSLEDLFKQSDVIDLHVP  106 (199)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSCC---------TTCE----ECCHHHHHHHCSEEEECCC
T ss_pred             ccceeeeeeec-ccccccccccccccce--eeeccCCccchhhh---------cchh----HHHHHHHHHhcccceeeec
Confidence            34468999998 9999999999998898  99999986432111         0111    1367788899999999863


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ...   .++ .++  |    ++.++.+   .+++++|+++
T Consensus       107 lt~---~T~-~li--~----~~~l~~m---k~~a~lIN~a  133 (199)
T d1dxya1         107 GIE---QNT-HII--N----EAAFNLM---KPGAIVINTA  133 (199)
T ss_dssp             CCG---GGT-TSB--C----HHHHHHS---CTTEEEEECS
T ss_pred             ccc---ccc-ccc--c----HHHhhcc---CCceEEEecc
Confidence            221   111 111  2    2333333   4788999998

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00028  Score=59.01  Aligned_cols=157  Identities=16%  Similarity=0.149  Sum_probs=88.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc-Ccceeeee---ccCCHHHHhCCCCEEEEcC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFL---GQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~-~~~~~~i~---~t~d~~~al~~ADvVIi~a  122 (270)
                      +.+.|+||++-+|..++..|+.+|.  +|++.|+++..  ..++.+... ......+.   ..+...+.+...|++|..+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~--l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~a   82 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVA   82 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHH--HHHHHhccCCceeeeeccccccccccccccccceeEEecc
Confidence            4688889999999999999999998  99999997532  111221100 00000000   0011223456899999999


Q ss_pred             CCCCCCCC---ch---hhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeec
Q 024248          123 GVPRKPGM---TR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (270)
Q Consensus       123 g~~~~~g~---~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t  192 (270)
                      |.......   +.   ...+..|+.    ..+.+++.+.+. +.+.+++++.....           ..+++..-.++.+
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~-----------~~~~~~~~~Y~~s  150 (245)
T d2ag5a1          83 GFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASS-----------VKGVVNRCVYSTT  150 (245)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTT-----------TBCCTTBHHHHHH
T ss_pred             cccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhc-----------cCCccchhHHHHH
Confidence            87643211   11   223344443    445555555543 45666667644331           0123322334554


Q ss_pred             hhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          193 MLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       193 ~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      +-.-..+-+.+|.+++  +..|++..+-.
T Consensus       151 Kaal~~l~r~lA~e~~--~~gIrvN~I~P  177 (245)
T d2ag5a1         151 KAAVIGLTKSVAADFI--QQGIRCNCVCP  177 (245)
T ss_dssp             HHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhh--hhCcEEEEEee
Confidence            4444567888998885  45676665543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.39  E-value=0.0016  Score=54.65  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=88.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeee-eccCC---H-------HHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGF-LGQQQ---L-------EDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i-~~t~d---~-------~~al~  113 (270)
                      +.+.|+||++-+|..++..|++.|.  .|++.|++++..  ...++........+..+ ..-+|   .       .+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4688899999999999999999998  999999986421  12222211111111100 00112   1       22346


Q ss_pred             CCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRKPG----MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ..|++|..||.....+    .+   ....+..|+...    +.+.+.+++. ..+.||+++.....            .+
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~------------~~  149 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASVGGI------------RG  149 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGT------------SB
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh-cCCCCcccccHhhc------------cC
Confidence            7899999998642222    12   223455565444    4455555544 35666666643321            02


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .|..-.++.++-.-..|-+.+|.+++  +..|++.++-.
T Consensus       150 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~i~P  186 (258)
T d1iy8a_         150 IGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRINAIAP  186 (258)
T ss_dssp             CSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCceEEEEee
Confidence            33222344444444567788888874  55677666653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.39  E-value=0.003  Score=53.04  Aligned_cols=157  Identities=18%  Similarity=0.103  Sum_probs=89.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh---HHHHhhccccCcceeee-eccCC----------HHHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGF-LGQQQ----------LEDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~---~~~dl~~~~~~~~~~~i-~~t~d----------~~~al  112 (270)
                      +++.|+||++-+|..++..|+..|.  +|++.|++....   ...++....  .....+ ...+|          ..+.+
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999  999999875321   112222211  111000 00111          22345


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      -.-|++|..+|......   .+   ....+..|+.....+++.+..+- ..+.+++++.-...           ....+.
T Consensus        95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~-----------~~~~~~  163 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ-----------AKAVPK  163 (272)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT-----------CSSCSS
T ss_pred             CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccc-----------cccccc
Confidence            67899999987653221   11   23345667766666666666554 34555555432221           001221


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .-.++.++-.-..+-+.+|..++  +..|++..+-
T Consensus       164 ~~~Y~asKaal~~ltk~lA~e~~--~~gIrVN~I~  196 (272)
T d1g0oa_         164 HAVYSGSKGAIETFARCMAIDMA--DKKITVNVVA  196 (272)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhc--hhCeEEEEEc
Confidence            22244544344457788889886  4556655554

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.39  E-value=0.0016  Score=54.50  Aligned_cols=156  Identities=14%  Similarity=0.102  Sum_probs=88.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCccee----eeeccCCH-------HHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVR----GFLGQQQL-------EDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~----~i~~t~d~-------~~al  112 (270)
                      +.+.|+||++-+|..+|..|++.|.  +|++.|+++..   ....++.... ...+.    .+....+.       .+.+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4678889999999999999999999  99999997521   1112222110 00000    01111111       2234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      -.-|++|..||......   .+   ....+..|+.    ..+.+++.+++. ..+.||+++.....            .+
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~isS~~~~------------~~  148 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASAHGL------------VA  148 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SC
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhc-CCceEeecccccce------------ec
Confidence            57899999998754221   11   2234555544    445666666654 34667766643331            02


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++-.-..|-+.+|.+++  +..|++..+-
T Consensus       149 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  184 (260)
T d1x1ta1         149 SANKSAYVAAKHGVVGFTKVTALETA--GQGITANAIC  184 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             cCCcchhhhhhhhHHHhHHHHHHHhc--hhCcEEEEEe
Confidence            33222345554444567888888885  4566655554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=0.0006  Score=57.12  Aligned_cols=157  Identities=15%  Similarity=0.113  Sum_probs=87.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHH-HhhccccCcceee---ee-ccCCHHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTNAVVRG---FL-GQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~-dl~~~~~~~~~~~---i~-~t~d~~~al~~ADvVIi~  121 (270)
                      +.+.|+||++-+|..++..|+++|.  .|++.|++++..+.. .+........+..   +. ......+.+-.-|++|..
T Consensus         6 K~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn   83 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNN   83 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEe
Confidence            4789999999999999999999999  999999986532221 1111000000000   00 001122345688999999


Q ss_pred             CCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          122 AGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       122 ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ||......   .+   ....+..|+...    +.+.+.+++. ..+.||+++.....            .+.|..-.++.
T Consensus        84 AG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~isS~~~~------------~~~~~~~~Y~a  150 (248)
T d2d1ya1          84 AAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASVQGL------------FAEQENAAYNA  150 (248)
T ss_dssp             CCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCGGGT------------SBCTTBHHHHH
T ss_pred             CcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-cccccccccccccc------------ccccccchhHH
Confidence            98653211   11   123455665444    4555555443 35677777643321            12332223444


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ++-.-..|-+.+|.+++  +..|++..+-
T Consensus       151 sKaal~~ltk~lA~el~--~~gIrVN~I~  177 (248)
T d2d1ya1         151 SKGGLVNLTRSLALDLA--PLRIRVNAVA  177 (248)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            44444567788888885  4556655554

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=0.00035  Score=58.19  Aligned_cols=152  Identities=16%  Similarity=0.158  Sum_probs=87.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-----HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-----~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      +++.|+||++-+|..++..|++.|.  +|++.|+++...     ...|+.+.+.   ++.+  -....+.+..-|++|..
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~~---v~~~--~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSDA---VDRA--FTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHHH---HHHH--HHHHHHHHSSCSEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHHH---HHHH--HHHHHHhcCCceEEEee
Confidence            4799999999999999999999999  999999986422     1223333211   1000  01223446689999999


Q ss_pred             CCCCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee
Q 024248          122 AGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (270)
Q Consensus       122 ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~  191 (270)
                      ||......   .+   ....+..|+..    .+.+++.+.+. ..+.||++|.-...    .        +.|..-.++.
T Consensus        81 AG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Iv~isS~~~~----~--------~~~~~~~Y~a  147 (237)
T d1uzma1          81 AGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSGL----W--------GIGNQANYAA  147 (237)
T ss_dssp             CSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC-----------------CCHHHHH
T ss_pred             ecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-CCCceEEEcchhhc----c--------CCcccHHHHH
Confidence            98753211   11   22345566544    45555665553 45567777644331    0        1222223455


Q ss_pred             chhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          192 TMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       192 t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      ++-.-..|-+.+|.+++  +..|++..+-
T Consensus       148 sKaal~~lt~~lA~e~~--~~gIrVN~I~  174 (237)
T d1uzma1         148 SKAGVIGMARSIARELS--KANVTANVVA  174 (237)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHhhhh--cCCceeeeee
Confidence            54444557788888874  4456655554

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=0.0026  Score=53.05  Aligned_cols=158  Identities=12%  Similarity=0.088  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCC-------HHHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQ-------LEDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d-------~~~al  112 (270)
                      .+.+.|+||++-+|..+|..|++.|.  .|++.|++++..  ...++.+.. ......    +....+       ..+.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34788999999999999999999999  999999986421  122332210 011100    111111       12234


Q ss_pred             CCCCEEEEcCCCCCCCCC---c---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPGM---T---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~---~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ...|++|..||.......   +   ....+..|+...    +.+++.+++. ..+.+|+++.-...           ..+
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~i~S~~~~-----------~~~  149 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIGSLTVE-----------EVT  149 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEECCGGGT-----------CCC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-ccccccccccchhc-----------ccc
Confidence            578999999987533211   1   223355565544    4555555433 34566665431110           001


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .+..-.++.++-.-..|-+.+|.+++  +..|++..+-
T Consensus       150 ~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I~  185 (251)
T d1vl8a_         150 MPNISAYAASKGGVASLTKALAKEWG--RYGIRVNVIA  185 (251)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CccccchHHHHHhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            22112345554444557778888874  4556655554

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00022  Score=59.99  Aligned_cols=155  Identities=18%  Similarity=0.101  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhcccc-CcceeeeeccCC-------HHHHhCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDT-NAVVRGFLGQQQ-------LEDALTGM  115 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~-~~~~~~i~~t~d-------~~~al~~A  115 (270)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|++++..+  ..++..... ...   ++..++       ..+.+...
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~~~D---vs~~~~v~~~~~~~~~~~g~i   80 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAVFILCD---VTQEDDVKTLVSETIRRFGRL   80 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEEEEECC---TTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEEEcc---CCCHHHHHHHHHHHHHhcCCC
Confidence            34689999999999999999999999  9999999754221  112221100 000   000011       22334578


Q ss_pred             CEEEEcCCCCCCCC----Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          116 DIVIIPAGVPRKPG----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       116 DvVIi~ag~~~~~g----~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      |++|..||.....+    .+   ....+..|+.    ..+.+++.+++.  .+.+|++|....          ..  +.|
T Consensus        81 DilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~----------~~--~~~  146 (250)
T d1ydea1          81 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVG----------AI--GQA  146 (250)
T ss_dssp             CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHH----------HH--CCT
T ss_pred             CEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccccccc----------cc--ccc
Confidence            99999998543222    11   1233455544    455666666553  366777663221          11  234


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      ..-.++.++-.-..|-+.+|.+++  +..|++..+-.
T Consensus       147 ~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I~P  181 (250)
T d1ydea1         147 QAVPYVATKGAVTAMTKALALDES--PYGVRVNCISP  181 (250)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEEE
T ss_pred             CcchhHHHHhhHHHHHHHHHHHhc--ccCeEEEEEee
Confidence            333455555444567888888875  55666655553

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.35  E-value=0.0023  Score=53.73  Aligned_cols=157  Identities=13%  Similarity=0.121  Sum_probs=90.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCcceee----eeccCCH-------HHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRG----FLGQQQL-------EDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~~----i~~t~d~-------~~al  112 (270)
                      +.+.|+||++-+|..+|..|+..|.  +|++.|++.+.   ....++....  .....    +....+.       .+.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4688899999999999999999999  99999997531   1122332211  11110    1111111       1234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      ..-|++|..||......   .+   ....+..|+.    ..+.+++.+.+......|+++|.....            .+
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~------------~~  151 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK------------IP  151 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT------------SC
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhc------------cc
Confidence            57899999998754221   11   1233555644    456666777665555666666643321            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .|..-.++.++-.-..|-+.+|.+++  +..|++.++-.
T Consensus       152 ~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I~P  188 (261)
T d1geea_         152 WPLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNIGP  188 (261)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEEE
T ss_pred             CccccccccCCccchhhHHHHHHHhh--hhCcEEEEEee
Confidence            33333355555445567788888875  55676666553

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.35  E-value=0.00029  Score=57.37  Aligned_cols=63  Identities=22%  Similarity=0.316  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ...+|+|+|. |.||+.+|..+..-|.  +|..||.........   ..         ....++++.++.||+|++++
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~~---------~~~~~l~~~l~~sDii~~~~  104 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---KG---------YYVDSLDDLYKQADVISLHV  104 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---TT---------CBCSCHHHHHHHCSEEEECS
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---ce---------eeeccccccccccccccccC
Confidence            4568999997 9999999999998898  999999864321111   11         01236888999999999986

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.31  E-value=0.00046  Score=55.37  Aligned_cols=89  Identities=22%  Similarity=0.220  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ...++|+|+|. |.+|..++..+...|.  +|..+|+....+.          .     ....++++.++.||+|++++.
T Consensus        40 l~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~~----------~-----~~~~~l~ell~~sDiv~~~~p  101 (181)
T d1qp8a1          40 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEGP----------W-----RFTNSLEEALREARAAVCALP  101 (181)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCSS----------S-----CCBSCSHHHHTTCSEEEECCC
T ss_pred             ccCceEEEecc-ccccccceeeeecccc--ccccccccccccc----------e-----eeeechhhhhhccchhhcccc
Confidence            45668999998 9999999999998898  9999998643210          0     112367899999999999763


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      ..  + .++ .++  |    .+.   +....|++++|+++
T Consensus       102 l~--~-~t~-~li--~----~~~---l~~mk~~ailIN~~  128 (181)
T d1qp8a1         102 LN--K-HTR-GLV--K----YQH---LALMAEDAVFVNVG  128 (181)
T ss_dssp             CS--T-TTT-TCB--C----HHH---HTTSCTTCEEEECS
T ss_pred             cc--c-ccc-ccc--c----cce---eeeccccceEEecc
Confidence            22  1 111 121  1    222   33334789999987

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.31  E-value=0.0017  Score=54.38  Aligned_cols=158  Identities=12%  Similarity=0.096  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCC-------HHHHhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQ-------LEDALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d-------~~~al~~AD  116 (270)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|++++..  ...++......... .+....+       ..+.+-.-|
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~-Dv~~~~~~~~~~~~~~~~~g~iD   82 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRH-DVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECC-CTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEe-ecCCHHHHHHHHHHHHHHhCCCC
Confidence            34688889999999999999999999  999999975321  22233211000000 0000011       123356789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ++|..||......   .+   ....+..|+.    ..+.+++.+++  ..+.||++|.....            .+.|..
T Consensus        83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~G~Iv~isS~~~~------------~~~~~~  148 (253)
T d1hxha_          83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE--TGGSIINMASVSSW------------LPIEQY  148 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TCEEEEEECCGGGT------------SCCTTB
T ss_pred             eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCCceecccchhhh------------cCcccc
Confidence            9999998753221   11   2234455644    44555555543  24777777643321            122322


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -.++.++-.-..|-+.+|..++-+...|++..+-
T Consensus       149 ~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~  182 (253)
T d1hxha_         149 AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIH  182 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEe
Confidence            2344444333456666777665433345544443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.30  E-value=0.00073  Score=56.22  Aligned_cols=157  Identities=18%  Similarity=0.095  Sum_probs=90.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCC-------HHHHhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQ-------LEDALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d-------~~~al~~AD  116 (270)
                      .+++.|+||++-+|..+|..|+.+|.  +|++.+++....  ...++... .....-.++...+       ..+.+..-|
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dls~~~~i~~~~~~i~~~~g~iD   81 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEAE-AIAVVADVSDPKAVEAVFAEALEEFGRLH   81 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCSS-EEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCc-eEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            34788999999999999999999999  999999975321  11122110 0000000111111       223356789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHhCC-CCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCee
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kvi  189 (270)
                      ++|..+|......   .+   ..+.+..|+.....+.+.+..+.. ...++++|.......+  .           .-.+
T Consensus        82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~--~-----------~~~Y  148 (241)
T d2a4ka1          82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAF--G-----------LAHY  148 (241)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHH--H-----------HHHH
T ss_pred             Eeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccccc--C-----------cccc
Confidence            9999887643211   11   234567787777777777776654 3455555543332111  1           1124


Q ss_pred             eechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          190 GVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       190 G~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.++-.-..|-+.+|+.++-.  .|++.++-
T Consensus       149 ~~sK~al~~lt~~lA~el~~~--gIrvN~I~  177 (241)
T d2a4ka1         149 AAGKLGVVGLARTLALELARK--GVRVNVLL  177 (241)
T ss_dssp             HHCSSHHHHHHHHHHHHHTTT--TCEEEEEE
T ss_pred             chhhHHHHHHHHHHHHHHhHh--CCEEeeec
Confidence            454444456889999998654  45554444

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.0005  Score=57.38  Aligned_cols=157  Identities=15%  Similarity=0.182  Sum_probs=89.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCC-------HHHHhCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQ-------LEDALTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d-------~~~al~~ADv  117 (270)
                      +.+.|+||++-+|..++..|++.|.  .|++.|++++..  ...++... .....-.+....+       ..+.+..-|+
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGAN-GKGLMLNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-EEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCC-CcEEEEEecCHHHhhhhhhhhhcccCCcce
Confidence            4678889999999999999999999  999999976421  11222111 0000000100111       1223457999


Q ss_pred             EEEcCCCCCCCCC---c---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCC
Q 024248          118 VIIPAGVPRKPGM---T---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (270)
Q Consensus       118 VIi~ag~~~~~g~---~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~k  187 (270)
                      +|..||.......   +   ....+..|+.    ..+.+++.+.+. ..+.||++|...       +   ..  +.|..-
T Consensus        82 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~II~isS~~-------~---~~--~~~~~~  148 (243)
T d1q7ba_          82 LVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK-RHGRIITIGSVV-------G---TM--GNGGQA  148 (243)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHH-------H---HH--CCTTCH
T ss_pred             ehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc-CCCEeeeecchh-------h---cC--CCCCCH
Confidence            9999986543221   1   2233455554    445555665554 356777776321       1   11  333333


Q ss_pred             eeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       188 viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .++.++-.-..|-+.+|.+++  +..|++.++-.
T Consensus       149 ~Y~asKaal~~lt~~lA~ela--~~gIrVN~I~P  180 (243)
T d1q7ba_         149 NYAAAKAGLIGFSKSLAREVA--SRGITVNVVAP  180 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhC--ccCeEEEEEec
Confidence            455555555567888888885  45566655553

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.29  E-value=0.0047  Score=51.28  Aligned_cols=158  Identities=17%  Similarity=0.216  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcc-ee-eeeccCCH-------HHHhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-VR-GFLGQQQL-------EDALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~-~~-~i~~t~d~-------~~al~~AD  116 (270)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++.......+........ +. .++...+.       .+.+-.-|
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            34688889999999999999999999  9999999865322111221110000 00 01111111       22345789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ++|..||......   .+   ....+..|+.    ..+.+++.+++.. .+.||++|.....            .+.|..
T Consensus        83 ilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~------------~~~~~~  149 (247)
T d2ew8a1          83 ILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYW------------LKIEAY  149 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGG------------SCCSSC
T ss_pred             EEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccccchhc------------ccCccc
Confidence            9999998753221   11   2234455544    4455666666543 4666666643220            123322


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -.++.++-.-..|-+.+|.+++  +..|++.++-
T Consensus       150 ~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~  181 (247)
T d2ew8a1         150 THYISTKAANIGFTRALASDLG--KDGITVNAIA  181 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ccchhhhccHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            2344544444457778888874  4556665554

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.27  E-value=0.0021  Score=53.74  Aligned_cols=155  Identities=15%  Similarity=0.128  Sum_probs=89.0

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceee----eeccCCH-------HHHhC
Q 024248           48 KV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG----FLGQQQL-------EDALT  113 (270)
Q Consensus        48 KI-~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~----i~~t~d~-------~~al~  113 (270)
                      || .|+||++-+|..+|..|+++|.  .|++.|++++.  ....++....  .....    ++...+.       .+.+-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            55 6889999999999999999999  99999997532  1223343221  11110    1001111       22345


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHHHHHHHHHhHh-----CCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-----~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .-|++|..||......   .+   ..+.+..|+.....+++.+.++     ...+.+++++.....            .+
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~------------~~  146 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK------------QG  146 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT------------SC
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc------------cc
Confidence            7899999998754221   11   2345677777766666655432     123556665432221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++-.-..|-+.+|.+++  +..|++..+-
T Consensus       147 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  182 (257)
T d2rhca1         147 VVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAVC  182 (257)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            33223355554444567788888875  4567665554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0023  Score=53.45  Aligned_cols=116  Identities=22%  Similarity=0.165  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---H-------HHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---L-------EDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~-------~~al  112 (270)
                      .+.+.|+||++-+|..+|..|+++|.  .|++.|++.+..  ...++...........+. .-+|   .       .+.+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            34688889999999999999999998  999999986422  222333211111111110 1112   1       1234


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHH----HHHHHHHHHhHhC--CCCEEEEecCC
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAG----IVKTLCEGIAKCC--PKAIVNLISNP  165 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~----i~~~i~~~i~~~~--p~a~viv~sNP  165 (270)
                      -..|++|..||....  .+..+.+..|+.    ..+..++.+.+..  ..+.|+++|..
T Consensus        81 G~iDilVnnAg~~~~--~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~  137 (254)
T d2gdza1          81 GRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  137 (254)
T ss_dssp             SCCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCcCeeccccccccc--ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence            578999999987643  233445556654    4455566665433  23667777643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.24  E-value=0.0049  Score=52.08  Aligned_cols=157  Identities=13%  Similarity=0.018  Sum_probs=83.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceeeee-ccCC----------HHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~i~-~t~d----------~~~al~  113 (270)
                      +.+.|+||+|-+|..+|..|+..|.  +|++.|++...  ..+.++.... ......+. .-.+          ..+...
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            4688999999999999999999998  99999998632  1223333210 00000000 0111          123346


Q ss_pred             CCCEEEEcCCCCCCCCC---c---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPGM---T---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~---~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..|++|..+|.......   +   ..+.+..|....    ...+...........+++.+....           .. +.
T Consensus       103 ~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~-----------~~-~~  170 (294)
T d1w6ua_         103 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYA-----------ET-GS  170 (294)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHH-----------HH-CC
T ss_pred             ccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchh-----------hh-cc
Confidence            78999999986543221   1   122233343332    333333333334444544443221           11 12


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      |..-.++.++-.-..+-+.+|..++  +..|++.++-
T Consensus       171 ~~~~~YsasKaal~~ltk~lA~ela--~~gIrVN~I~  205 (294)
T d1w6ua_         171 GFVVPSASAKAGVEAMSKSLAAEWG--KYGMRFNVIQ  205 (294)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHh--HhCeEEEEEc
Confidence            2222245544444567788888885  4556655554

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.23  E-value=0.0019  Score=53.93  Aligned_cols=78  Identities=14%  Similarity=0.115  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCcceeeeecc---------CCHHHHhC
Q 024248           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQ---------QQLEDALT  113 (270)
Q Consensus        46 ~mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~~~~i~~t---------~d~~~al~  113 (270)
                      .+++.|+||+|  -||..+|..|+..|.  +|++.|+++. ...+.++............-.+         ....+.+.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            45799999877  599999999999999  9999999864 2223333322111111100001         11233456


Q ss_pred             CCCEEEEcCCCC
Q 024248          114 GMDIVIIPAGVP  125 (270)
Q Consensus       114 ~ADvVIi~ag~~  125 (270)
                      ..|++|.++|..
T Consensus        83 ~id~lV~nag~~   94 (274)
T d2pd4a1          83 SLDFIVHSVAFA   94 (274)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCeEEeecccc
Confidence            889999998864

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0017  Score=54.59  Aligned_cols=158  Identities=12%  Similarity=0.110  Sum_probs=84.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC----------HHHH
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ----------LEDA  111 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d----------~~~a  111 (270)
                      +..++.|+||++-+|..+|..|+++|.  +|++.|++++..  ...++.... ......+. ...+          ..+.
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~   89 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKL   89 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999986421  112222110 01110000 0011          1223


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cch---hhhHHhhH----HHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          112 LTGMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g---~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      ....|+++..+|......   .+.   ...+..|+    ...+.+.+.+++.  ++.+++++.....            .
T Consensus        90 ~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS~~~~------------~  155 (269)
T d1xu9a_          90 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSLAGK------------V  155 (269)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEGGGT------------S
T ss_pred             hCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEeccchhc------------C
Confidence            457899999887643211   121   12344453    3456666666543  4666666533221            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      ++|..-.++.++-.-..|-+.|+.+++.....|++..+
T Consensus       156 ~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v  193 (269)
T d1xu9a_         156 AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLC  193 (269)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEE
Confidence            23433345554433345666777766433334555433

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.21  E-value=0.0019  Score=54.71  Aligned_cols=154  Identities=20%  Similarity=0.173  Sum_probs=84.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCC-------HHHHhCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQ-------LEDALTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d-------~~~al~~ADv  117 (270)
                      +.+.|+||++-+|..+|..|++.|.  +|++.|++++..  ...++... .......+....+       ..+.+...|+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~-~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGDN-VLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG-EEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCC-eeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            4789999999999999999999999  999999975321  11222211 0000000000111       1233568899


Q ss_pred             EEEcCCCCCCCC-------Cc----hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          118 VIIPAGVPRKPG-------MT----RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       118 VIi~ag~~~~~g-------~~----r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      +|..||......       +.    ....+..|+.    ..+.+++.+++. ...+|++.|. ...            .+
T Consensus        83 lvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~-~g~iI~i~S~-~~~------------~~  148 (276)
T d1bdba_          83 LIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS-RGNVIFTISN-AGF------------YP  148 (276)
T ss_dssp             EECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCG-GGT------------ST
T ss_pred             ccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc-CCCceeeeec-hhc------------cC
Confidence            999998642211       11    1223445543    455666666554 2334444332 221            02


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++-.-..|-+.+|..++  +. |++..+.
T Consensus       149 ~~~~~~Y~asKaal~~ltr~lA~ela--~~-IrVN~I~  183 (276)
T d1bdba_         149 NGGGPLYTAAKHAIVGLVRELAFELA--PY-VRVNGVG  183 (276)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHT--TT-CEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhh--cc-eEEcccC
Confidence            23222355554444567788999986  33 6665554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00052  Score=55.20  Aligned_cols=104  Identities=19%  Similarity=0.249  Sum_probs=64.9

Q ss_pred             cccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHH
Q 024248           30 SSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLE  109 (270)
Q Consensus        30 ~~~~~~~~~~~~~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~  109 (270)
                      .+.|.+..... ..-..++|+|+|. |.+|..++..+...|.  +|..+|.......    ...         ....+++
T Consensus        29 ~~~w~~~~~~~-~~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~----~~~---------~~~~~l~   91 (188)
T d1sc6a1          29 RGVGNKLAAGS-FEARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLPL----GNA---------TQVQHLS   91 (188)
T ss_dssp             HTCCC-----C-CCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCC----TTC---------EECSCHH
T ss_pred             hCCCccccccc-ccccceEEEEeec-ccchhhhhhhcccccc--eEeeccccccchh----hhh---------hhhhhHH
Confidence            34565554442 2344569999997 9999999999998888  9999998642110    000         1124688


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       110 ~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                      +.++.||+|++++.....   ++ .++  |    .+.++.+   .+++++|+++
T Consensus        92 ell~~sDii~i~~plt~~---T~-~li--~----~~~l~~m---k~~a~lIN~a  132 (188)
T d1sc6a1          92 DLLNMSDVVSLHVPENPS---TK-NMM--G----AKEISLM---KPGSLLINAS  132 (188)
T ss_dssp             HHHHHCSEEEECCCSSTT---TT-TCB--C----HHHHHHS---CTTEEEEECS
T ss_pred             HHHhhccceeecccCCcc---hh-hhc--c----HHHHhhC---CCCCEEEEcC
Confidence            899999999998743311   11 111  2    2333333   4789999997

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.19  E-value=0.0072  Score=50.44  Aligned_cols=157  Identities=17%  Similarity=0.156  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCC-------HHHHhCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQ-------LEDALTGMD  116 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d-------~~~al~~AD  116 (270)
                      .+.+.|+||++-+|..+|..|++.|.  +|++.|++++..  ...++..... ...-.+....+       ..+.+-..|
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGDAAR-YQHLDVTIEEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGGGEE-EEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCceE-EEEcccCCHHHHHHHHHHHHHHcCCcc
Confidence            45799999999999999999999999  999999975321  1122211100 00000000011       123346789


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ++|..||......   .+   ....+..|+.    ..+.+++.+++. ..+.||++|.-...            .+.|..
T Consensus        82 ilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~II~isS~~~~------------~~~~~~  148 (254)
T d1hdca_          82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAGL------------MGLALT  148 (254)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------SCCTTC
T ss_pred             EEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc-CCCeecccccchhc------------ccccch
Confidence            9999998753221   11   2234555654    445555555554 35677777643321            123322


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -.|+.++-.-..|-+.||.+++  +..|++..+-
T Consensus       149 ~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I~  180 (254)
T d1hdca_         149 SSYGASKWGVRGLSKLAAVELG--TDRIRVNSVH  180 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhC--CCceEEEEee
Confidence            3345554444567788888874  4456555444

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.18  E-value=0.0021  Score=53.94  Aligned_cols=156  Identities=14%  Similarity=0.131  Sum_probs=89.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC----------HHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d----------~~~al~  113 (270)
                      +.+.|+||++-+|..++..|+..|.  .|++.|++++..  ...++....  .....+. .-+|          ..+.+-
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4688999999999999999999998  999999976421  222333221  1111110 0011          122346


Q ss_pred             CCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .-|++|..+|.....+    .+   ....+..|+..    .+.+++.+.+. ..+.||++|....           . .+
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~-----------~-~~  148 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAG-----------V-KG  148 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-SC
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhh-----------c-cC
Confidence            7999999998643222    11   22334555543    45555555543 4567777663211           1 12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      .|..-.|+.++-.-..|-+.+|..++  +..|++.++-.
T Consensus       149 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~P  185 (260)
T d1zema1         149 PPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAISP  185 (260)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEecc
Confidence            33222355555455568888898875  55676666653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.17  E-value=0.004  Score=52.41  Aligned_cols=157  Identities=14%  Similarity=0.109  Sum_probs=86.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhcccc-Ccceeeee-ccCC---H-------HHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT-NAVVRGFL-GQQQ---L-------EDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~-~~~~~~i~-~t~d---~-------~~al  112 (270)
                      +.+.|+||++-+|..+|..|+..|.  +|++.|++++..  ...++..... ...+..+. .-+|   .       .+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4688999999999999999999998  999999986421  2233433211 11111111 0112   1       1234


Q ss_pred             CCCCEEEEcCCCCCCCC-------Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHH
Q 024248          113 TGMDIVIIPAGVPRKPG-------MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g-------~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~  178 (270)
                      -..|++|..||......       ++   ....+..|+.    ..+.+++.+++. ...+|++.|.....          
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~Ss~a~~----------  152 (272)
T d1xkqa_          84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGP----------  152 (272)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCGGGSS----------
T ss_pred             CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccchhccc----------
Confidence            57899999998753211       11   1223445554    345555555543 34555554422211          


Q ss_pred             HhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       179 ~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                        .+.|..-.++.++-.-..|-+.+|..++  +..|++.++-
T Consensus       153 --~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  190 (272)
T d1xkqa_         153 --QAQPDFLYYAIAKAALDQYTRSTAIDLA--KFGIRVNSVS  190 (272)
T ss_dssp             --SCCCSSHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEEE
T ss_pred             --cCCCCcchhhhHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence              1233222345554444567788888875  4456555554

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0029  Score=52.36  Aligned_cols=158  Identities=14%  Similarity=0.163  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCcceeeeeccCC----------HHHHh
Q 024248           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQ----------LEDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~~~~i~~t~d----------~~~al  112 (270)
                      .++|.|+||+|  -+|..+|..|+++|.  +|++.|+++. ...+.++........... ....+          ..+..
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQ-CDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceee-cccchHHHHHHHHHHhhhcc
Confidence            45799999977  588999999999999  9999999864 222222222111111000 00111          11223


Q ss_pred             CCCCEEEEcCCCCCCCCCc-------h----hhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          113 TGMDIVIIPAGVPRKPGMT-------R----DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~-------r----~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                      ...|++|..++.......+       .    ......|......+.+.+.... +...++++|.....            
T Consensus        82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~------------  149 (258)
T d1qsga_          82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------  149 (258)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT------------
T ss_pred             cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc------------
Confidence            4568888887653211110       0    1122344445555555555443 34456666643321            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .+.|..-.++.++-.-..+-+.+|..++  ++.|++.++-
T Consensus       150 ~~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~  187 (258)
T d1qsga_         150 RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  187 (258)
T ss_dssp             SBCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeeccc
Confidence            1234334466655555668899999996  5667766665

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.16  E-value=0.00043  Score=54.34  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      .+..||+|||+ |.+|..++..|...|. .+++++.+...++  .++.... ....   ..-+++.+++.++|+||.+.+
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~ka--~~l~~~~-~~~~---~~~~~~~~~l~~~Divi~ats   93 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYERA--VELARDL-GGEA---VRFDELVDHLARSDVVVSATA   93 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHHH--HHHHHHH-TCEE---CCGGGHHHHHHTCSEEEECCS
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHHH--HHHHHhh-hccc---ccchhHHHHhccCCEEEEecC
Confidence            34568999998 9999999999988876 4799998864333  2232211 0111   112467788999999999987


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus        94 s~   95 (159)
T d1gpja2          94 AP   95 (159)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.0042  Score=51.90  Aligned_cols=156  Identities=15%  Similarity=0.158  Sum_probs=88.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC----------HHHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d----------~~~al  112 (270)
                      .+.+.|+||++-+|..+|..|++.|.  .|++.|++++..  ...++....  .....+. .-++          ..+.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34788999999999999999999999  999999975422  222333221  1111010 0112          12234


Q ss_pred             CCCCEEEEcCCCCCCC--CCch---hhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          113 TGMDIVIIPAGVPRKP--GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      ..-|++|..||.....  ..+.   ...+..|+.    ..+.+++.+.+.. .+.+|++|.-...            .+.
T Consensus        87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~------------~~~  153 (255)
T d1fmca_          87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAE------------NKN  153 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------CCC
T ss_pred             CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchh------------ccc
Confidence            6799999999865321  1222   223455544    3455566666543 4556665532221            122


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      |..-.|+.++-.-..|-+.+|.+++  +..|++..+-
T Consensus       154 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  188 (255)
T d1fmca_         154 INMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGIA  188 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHhC--ccCeEEEEee
Confidence            3223355554444567788888874  4556665554

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.09  E-value=0.0047  Score=51.64  Aligned_cols=158  Identities=13%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcce-e-eeeccCCH-------HHHhC-
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVV-R-GFLGQQQL-------EDALT-  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~-~-~i~~t~d~-------~~al~-  113 (270)
                      ..++.|+||++-+|..++..|+++|.  +|++.|+++...  ...++......... . .+...++.       .+.+. 
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            34799999999999999999999999  999999986321  12223221110000 0 01111111       12232 


Q ss_pred             CCCEEEEcCCCCCCCCC---c---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPGM---T---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~---~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .-|++|.++|.......   +   ....+..|+.    .++.+.+.+.+. +.+.++++|.....            .+.
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~isS~~~~------------~~~  150 (258)
T d1ae1a_          84 KLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIAGF------------SAL  150 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGGGT------------SCC
T ss_pred             CcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-cccccccccccccc------------ccc
Confidence            37899988886543211   1   2223344443    445555566554 45566666643331            133


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      |..-.++.++-.-..+-+.+|++++-  ..|++.++-
T Consensus       151 ~~~~~Y~~sK~al~~lt~~lA~el~~--~gIrvN~I~  185 (258)
T d1ae1a_         151 PSVSLYSASKGAINQMTKSLACEWAK--DNIRVNSVA  185 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGG--GTEEEEEEE
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcCc--CcEEEEEEe
Confidence            43334555443445577888888864  445554444

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.07  E-value=0.0061  Score=51.28  Aligned_cols=158  Identities=16%  Similarity=0.145  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccC-cceeee----eccCCH-------HHH
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTN-AVVRGF----LGQQQL-------EDA  111 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~-~~~~~i----~~t~d~-------~~a  111 (270)
                      .+.+.|+||++-+|..+|..|++.|.  .|++.|++++.  ..+.++...... ..+..+    ....+.       .+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999998  99999998542  122333322110 111111    111111       123


Q ss_pred             hCCCCEEEEcCCCCCCCC-----Cch---hhhHHhhHHH----HHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          112 LTGMDIVIIPAGVPRKPG-----MTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       112 l~~ADvVIi~ag~~~~~g-----~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                      +-.-|++|..+|.....+     .+.   ...+..|+..    .+.+++.+.+ ...+.++++|.-...           
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~ss~~~~-----------  149 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSSIVAGP-----------  149 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECCGGGSS-----------
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchhhhhcc-----------
Confidence            447899999998643222     111   2234455544    4455555554 345666655422110           


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                       .+.|..-.++.++-.-..|-+.+|..++  +..|++..+-
T Consensus       150 -~~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~  187 (274)
T d1xhla_         150 -QAHSGYPYYACAKAALDQYTRCTAIDLI--QHGVRVNSVS  187 (274)
T ss_dssp             -SCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -ccCCCCceehhhhhHHHHHHHHHHHHHh--HhCCceeeec
Confidence             0222222344444444457788888874  4556655554

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.07  E-value=0.0063  Score=50.82  Aligned_cols=156  Identities=14%  Similarity=0.068  Sum_probs=87.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---H-------HHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---L-------EDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~-------~~al  112 (270)
                      .+.+.|+||++-+|..++..|++.|.  .|++.|++++..  ...++....  .....+. .-+|   .       .+.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            34788999999999999999999998  999999975421  122332211  1111000 0111   1       1223


Q ss_pred             C-CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 T-GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 ~-~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      . .-|++|..+|......   .+   ....+..|+...    +.+.+.+.+ ...+.||+++.-...            .
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~G~Ii~isS~~~~------------~  150 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA-SERGNVVFISSVSGA------------L  150 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TSSEEEEEECCGGGT------------S
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhh-hcccccccccccccc------------c
Confidence            3 4799999998654222   11   223456665544    444444444 345667766643221            1


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.|..-.++.++-.-..|-+.+|..++  +..|++..+-
T Consensus       151 ~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  187 (259)
T d2ae2a_         151 AVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGVG  187 (259)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHhC--cCceEEEEee
Confidence            223222344444444457788888875  5566665554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0015  Score=50.07  Aligned_cols=100  Identities=10%  Similarity=0.008  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccCcceeeeec-cCC---HHH-HhCCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLG-QQQ---LED-ALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~~~~~~i~~-t~d---~~~-al~~ADvV  118 (270)
                      +.+|.|+|. |.+|..++..|...|.  +++++|.++..  ....++...    .+..+.+ .++   +++ .+..||.|
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHhccccCCEE
Confidence            457999998 9999999999999998  99999988642  122222211    1111111 112   322 36789999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEe-cCCCC
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVN  167 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-sNPv~  167 (270)
                      |++.+.         |  ..|+    .++..+++.+|+..++.- .+|.+
T Consensus        76 i~~~~~---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          76 LALSDN---------D--ADNA----FVVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSC---------H--HHHH----HHHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEcccc---------H--HHHH----HHHHHHHHhCCCCceEEEEcCHHH
Confidence            998521         1  3343    345566777888755554 45655

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.05  E-value=0.0042  Score=51.73  Aligned_cols=155  Identities=17%  Similarity=0.215  Sum_probs=89.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---H-------HHHhCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---L-------EDALTG  114 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~-------~~al~~  114 (270)
                      .+.|+||++-+|..+|..|++.|.  .|+++|+++...  ...++....  .....+. .-+|   .       .+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            466779999999999999999998  999999975321  223343321  1111010 0112   1       223458


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 024248          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (270)
Q Consensus       115 ADvVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p  184 (270)
                      -|++|..+|......   .+   ....+..|+.    ..+.+++.+.+. ..+.||++|....          ..  +.|
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~----------~~--~~~  154 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSIVG----------LT--GNV  154 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCTHH----------HH--CCT
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC-CCeEEEEECCHHh----------cC--CCC
Confidence            899999988653222   11   2233455544    445566666654 4567777764322          11  334


Q ss_pred             CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       185 ~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      ..-.++.++-.-..|-+.+|.+++  +..|++.++-.
T Consensus       155 ~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN~V~P  189 (251)
T d2c07a1         155 GQANYSSSKAGVIGFTKSLAKELA--SRNITVNAIAP  189 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEEcc
Confidence            333456655444567788888874  45666655543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00082  Score=52.91  Aligned_cols=76  Identities=18%  Similarity=0.198  Sum_probs=44.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ..+||+|+|++|.+|+.++..+.+.+-+.=+..+|+........|+......... .+..+.++++.++.+|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKT-GVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCC-SCCEESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccC-CceeeccHHHHhcccceEEEe
Confidence            4689999999999999999888776433223455654321111222221111111 112345677778899987654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0006  Score=54.60  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .++.||+|||| |..|...|..|+++|+  +|+++|...
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            34569999998 9999999999999999  999999975

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.01  E-value=0.00067  Score=53.98  Aligned_cols=74  Identities=16%  Similarity=0.248  Sum_probs=43.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC---ChhHHHHhhcccc--CcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~---~~~~~~dl~~~~~--~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      |||+|+||||++|.-+...|..++.+ ||.-+-...   ..++.....+...  ...+. +....+......++|++|.+
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dvvf~a   79 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLP-LQPMSDVRDFSADVDVVFLA   79 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCB-EEEESCGGGTCTTCCEEEEC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccc-cccchhhhhhhcccceeecc
Confidence            59999999999999999999998765 554442211   1222211111100  11111 11123444456789999998


Q ss_pred             C
Q 024248          122 A  122 (270)
Q Consensus       122 a  122 (270)
                      .
T Consensus        80 l   80 (179)
T d2g17a1          80 T   80 (179)
T ss_dssp             S
T ss_pred             c
Confidence            6

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.00  E-value=0.00022  Score=55.68  Aligned_cols=70  Identities=23%  Similarity=0.449  Sum_probs=44.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~-~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      -||+|+||||++|.-+..+|..+++ ..++.++..++..++..  ...  .......   ...+..+.++|+++++++
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~--~~~--~~~~~~~---~~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFK--DQDITIE---ETTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE--EET--TEEEEEE---ECCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc--ccc--CCccccc---ccchhhhhhhhhhhhccC
Confidence            3899999999999999999988863 45777776543322211  111  1111111   112345789999999863

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.97  E-value=0.0079  Score=50.08  Aligned_cols=157  Identities=16%  Similarity=0.104  Sum_probs=84.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeee--eccCC----------HHHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGF--LGQQQ----------LEDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i--~~t~d----------~~~al  112 (270)
                      ...|.|+||++-+|..+|..|+.+|.  .|++++++.+.. ...++...........+  -.+.+          ..+.+
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  777776554322 12222211111111100  00111          12235


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhhHHhhHH----HHHHHHHHHhHh--CCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAG----IVKTLCEGIAKC--CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~~r~~~~~~N~~----i~~~i~~~i~~~--~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ...|++|..||....  .+....+..|+.    ..+.+++.+.+.  .+.+.|++++.-...            .+.|..
T Consensus        83 g~iDilvnnAG~~~~--~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~------------~~~~~~  148 (254)
T d1sbya1          83 KTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF------------NAIHQV  148 (254)
T ss_dssp             SCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT------------SCCTTS
T ss_pred             CCCCEEEeCCCCCCH--HHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc------------cCCCCC
Confidence            678999999986532  233445666765    456666666543  245677766532221            012222


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -.++.++-....|-+.||..+  .+..|++..+-
T Consensus       149 ~~Y~asKaal~~~t~~la~el--~~~gIrVn~I~  180 (254)
T d1sbya1         149 PVYSASKAAVVSFTNSLAKLA--PITGVTAYSIN  180 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--HHHSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhc--cccCeEEEEEE
Confidence            224444444445666677665  33345554444

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.96  E-value=0.00044  Score=54.55  Aligned_cols=67  Identities=16%  Similarity=0.393  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ++++||+|+|. |++|..++..+...+-+.-+.++|++.....         ....   ....++++...+.|+|+++..
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------~~~~---~~~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------KTPV---FDVADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------SSCE---EEGGGGGGTTTTCSEEEECSC
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccccc---------cccc---ccchhhhhhccccceEEEeCC
Confidence            35689999997 9999999888877654544456666543211         0111   123455566789999999864

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0027  Score=49.24  Aligned_cols=68  Identities=15%  Similarity=0.198  Sum_probs=43.7

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~-la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +|||+|||+ |.+|.. ....+...+-++-+.++|.+++....  +....   .   +...+++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~--~~~~~---~---~~~~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALP--ICESW---R---IPYADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHH--HHHHH---T---CCBCSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhh--hhhcc---c---ccccccchhhhhhcccccccc
Confidence            579999997 999985 56666655444445688887654321  11110   0   112356777778999999985

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.89  E-value=0.007  Score=50.44  Aligned_cols=165  Identities=11%  Similarity=0.070  Sum_probs=87.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceee----eeccCC-------HHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG----FLGQQQ-------LEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~----i~~t~d-------~~~al~  113 (270)
                      +.+.|+||++-+|..+|..|++.|.  +|++.|+++...  ...++.... ......    +....+       ..+.+-
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            3688999999999999999999998  999999987522  122232110 001100    110111       122345


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCC
Q 024248          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~  183 (270)
                      .-|++|..+|......   .+   ....+..|+.    ..+.+++.+.+....+.+++.+.........     ....+.
T Consensus        87 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~-----~~~~~~  161 (260)
T d1h5qa_          87 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ-----SSLNGS  161 (260)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCE-----EETTEE
T ss_pred             CCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccc-----cccccC
Confidence            7899999998653221   11   1234455654    4455666665555566666554322100000     000000


Q ss_pred             CCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       184 p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      |..-.++.++-.-..+-+.+|.+++  +..|++.++-.
T Consensus       162 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrvN~I~P  197 (260)
T d1h5qa_         162 LTQVFYNSSKAACSNLVKGLAAEWA--SAGIRVNALSP  197 (260)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             ccccchhhhhhhHHHHHHHHHHHhc--hhCeEEeecCC
Confidence            1111234444444557778888875  45566655543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.87  E-value=0.0051  Score=44.74  Aligned_cols=70  Identities=14%  Similarity=0.132  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +..||+|+|+ |.+|..-+..|+..|.  +|++++....... ..+.+..   .+......-+ ++.+.++++|+.+.
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~-~~~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at   80 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQF-TVWANEG---MLTLVEGPFD-ETLLDSCWLAIAAT   80 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHH-HHHHTTT---SCEEEESSCC-GGGGTTCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHH-HHHHhcC---CceeeccCCC-HHHhCCCcEEeecC
Confidence            3459999998 9999999999999998  9999998654322 2232221   1111111112 35689999999874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.86  E-value=0.007  Score=50.56  Aligned_cols=156  Identities=13%  Similarity=0.046  Sum_probs=84.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC---H-------HHHh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ---L-------EDAL  112 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d---~-------~~al  112 (270)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|+++...  ...++....  .....+. .-++   .       .+.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999999  999999985321  222332211  1111000 0111   1       1223


Q ss_pred             C-CCCEEEEcCCCCCCC---CCc---hhhhHHhhHHHH----HHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhC
Q 024248          113 T-GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (270)
Q Consensus       113 ~-~ADvVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~s  181 (270)
                      . .-|++|..+|.....   ..+   ....+..|+...    +.+.+.+++. ..+.|+++|.-...    .        
T Consensus        84 ~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~isS~~~~----~--------  150 (259)
T d1xq1a_          84 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSSIAGV----V--------  150 (259)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC------------------
T ss_pred             CCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccc-cccccccccccccc----c--------
Confidence            3 379999999865321   112   223455665544    4555555543 34666666643321    0        


Q ss_pred             CCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          182 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       182 g~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      +.|..-.++.++-.-..|-+.+|.+++  +..|++.++-
T Consensus       151 ~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~V~  187 (259)
T d1xq1a_         151 SASVGSIYSATKGALNQLARNLACEWA--SDGIRANAVA  187 (259)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             cccccccccccccchhhhhHHHHHHhc--ccCeEEEEec
Confidence            233333456655455567788888874  4556665554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.82  E-value=0.0021  Score=51.45  Aligned_cols=107  Identities=22%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhcccc---------------Ccc-e-eee-
Q 024248           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDT---------------NAV-V-RGF-  102 (270)
Q Consensus        42 ~~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~---------------~~~-~-~~i-  102 (270)
                      .+.++-||+|+|| |.+|..-+..++..|-  .|..+|++.... +..++.....               +.. + ..+ 
T Consensus        25 g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~  101 (183)
T d1l7da1          25 GTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFR  101 (183)
T ss_dssp             EEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC-----------------------
T ss_pred             CCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHH
Confidence            4677789999998 9999999888887777  999999987422 2222211000               000 0 000 


Q ss_pred             -eccCCHHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       103 -~~t~d~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                       .....+.+.+++||+||-++-.|.+...-   +      +.++.++.++   |..+|+=++
T Consensus       102 ~~~~~~l~~~l~~aDlVI~talipG~~aP~---l------it~~mv~~Mk---~GSVIVDva  151 (183)
T d1l7da1         102 KKQAEAVLKELVKTDIAITTALIPGKPAPV---L------ITEEMVTKMK---PGSVIIDLA  151 (183)
T ss_dssp             CCHHHHHHHHHTTCSEEEECCCCTTSCCCC---C------SCHHHHTTSC---TTCEEEETT
T ss_pred             HHHHHHHHHHHHhhhhheeeeecCCcccce---e------ehHHHHHhcC---CCcEEEEEe
Confidence             00112456689999999998766433221   1      1244455544   677776554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.80  E-value=0.00076  Score=54.68  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .||+|||| |..|.+.|+.|+++|+  +|+++|++.
T Consensus         7 ~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            48999998 9999999999999999  999999863

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0095  Score=49.38  Aligned_cols=116  Identities=19%  Similarity=0.225  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeee-eccCCH----------HHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGF-LGQQQL----------EDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i-~~t~d~----------~~al~  113 (270)
                      .-+.|+||++-+|..+|..|++.|.  .|++.|+++++.  .+.++...  ......+ ...+|.          .+.+.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            3678889999999999999999999  999999986421  22333321  1111111 111122          12355


Q ss_pred             CCCEEEEcCCCCCCCCCc------hhhhHHhhH----HHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          114 GMDIVIIPAGVPRKPGMT------RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~------r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      ..|++|..+|........      ..+.+..|+    ..++.+++.+.+. ..+.|++++....
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~  146 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAG  146 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchh
Confidence            799999999876432211      123344443    4456667777654 4567777765443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.79  E-value=0.0091  Score=49.24  Aligned_cols=167  Identities=15%  Similarity=0.168  Sum_probs=92.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCc-----cEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCC----------HHH
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQ----------LED  110 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~-----~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d----------~~~  110 (270)
                      |.|+||++-+|..+|..|++.|.-     ..|+++|++++..  ...++....  .....+. .-+|          ..+
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            568899999999999999998861     1389999975321  223333221  1111010 0111          223


Q ss_pred             HhCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          111 ALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       111 al~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                      .+...|++|..||......   .+   ....+..|+.    .++.+++.+++. ..+.++++|.-...            
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~------------  148 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAAT------------  148 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEechhhc------------
Confidence            3457899999998753221   11   2234555644    456666666654 45667777643321            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEccCCCCceeeccccc
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV  234 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~hg~~~~vp~~S~~  234 (270)
                      .++|..-.|+.++-.-..|-+.+|.+++  +..|++..+-. |- .--|.|...
T Consensus       149 ~~~~~~~~Y~asK~al~~lt~~la~el~--~~gIrvn~i~P-G~-v~T~~~~~~  198 (240)
T d2bd0a1         149 KAFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRITDVQP-GA-VYTPMWGKV  198 (240)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEEE-CC-BCSTTTCCC
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHhC--cCCeEEEEeee-Cc-ccCchhhhc
Confidence            1344333455555444567788888875  45676655543 22 222555544

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.77  E-value=0.0054  Score=50.95  Aligned_cols=154  Identities=10%  Similarity=0.042  Sum_probs=86.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCH-------HHHhCCCCEEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQL-------EDALTGMDIVI  119 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~-------~~al~~ADvVI  119 (270)
                      ...|+||++-+|..+|..|++.|.  .|++.|++.+.. +...+........   +....+.       .+.+-.-|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~d---v~~~~~~~~~~~~~~~~~G~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLK---PMSEQEPAELIEAVTSAYGQVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSE---ECCCCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEec---cCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            367999999999999999999998  999999875321 1111111000011   1111222       23455789999


Q ss_pred             EcCCCCCCCC----Cchh---hhHHhhH----HHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCe
Q 024248          120 IPAGVPRKPG----MTRD---DLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (270)
Q Consensus       120 i~ag~~~~~g----~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kv  188 (270)
                      ..||.....+    .+..   ..+..|+    ..++.+++.+++.. .+.||++|.-...            .+.|..-.
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~------------~~~~~~~~  143 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPF------------GPWKELST  143 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTT------------SCCTTCHH
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeecccccccc------------cccccccc
Confidence            9887542222    1111   2234443    44566777776653 4666666643321            12232223


Q ss_pred             eeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       189 iG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                      ++.++-.-..|-+.+|..++  +..|++.++..
T Consensus       144 Y~asKaal~~lt~~lA~ela--~~gIrVN~I~P  174 (252)
T d1zmta1         144 YTSARAGACTLANALSKELG--EYNIPVFAIGP  174 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTCCEEEEEE
T ss_pred             cccccccHHHHHHHHHHHhc--ccCcEEEEEec
Confidence            55554444567788888885  45566655553

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.71  E-value=0.011  Score=50.59  Aligned_cols=155  Identities=13%  Similarity=0.164  Sum_probs=83.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-------hhHH----HHhhccccCcceeeeeccCCH-------
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------PGVT----ADISHMDTNAVVRGFLGQQQL-------  108 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-------~~~~----~dl~~~~~~~~~~~i~~t~d~-------  108 (270)
                      +.+.|+||++-+|..+|..|+++|.  .|++.|++..       ....    .++.... ......+....+.       
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-GKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-CEEEEECCCGGGHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc-cccccccchHHHHHHHHHHH
Confidence            3588889999999999999999999  9999998642       1111    1221110 0000001111122       


Q ss_pred             HHHhCCCCEEEEcCCCCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHH
Q 024248          109 EDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (270)
Q Consensus       109 ~~al~~ADvVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~  178 (270)
                      .+.+-.-|++|..||......   .+   ....+..|+.    ..+.+++.+++.. .+.||++|....          .
T Consensus        85 ~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~----------~  153 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASG----------I  153 (302)
T ss_dssp             HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH----------H
T ss_pred             HHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhh----------c
Confidence            123457899999998754221   11   2234556655    4455566666543 466777663211          0


Q ss_pred             HhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEE
Q 024248          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (270)
Q Consensus       179 ~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~  219 (270)
                      .  +.|..-.|+.++-.-..|-+.+|.+++  +..|++..+
T Consensus       154 ~--~~~~~~~Y~asKaal~~lt~~la~E~~--~~gIrVN~I  190 (302)
T d1gz6a_         154 Y--GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCNTI  190 (302)
T ss_dssp             H--CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             C--CCCCcHHHHHHHHHHHHHHHHHHHHHh--ccCCceeee
Confidence            1  233222344444444456666666653  344544444

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.69  E-value=0.00059  Score=55.73  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |||+|||| |..|.+.|+.|+++|+  +|++++...
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            79999998 9999999999999999  999999864

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.69  E-value=0.012  Score=49.06  Aligned_cols=156  Identities=15%  Similarity=0.137  Sum_probs=83.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh--hHHHHhhccccC-cceeeee-ccCC---H-------HHHhC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTN-AVVRGFL-GQQQ---L-------EDALT  113 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~--~~~~dl~~~~~~-~~~~~i~-~t~d---~-------~~al~  113 (270)
                      .+.|+||++-+|..+|..|+..|.  +|++.|++++.  ....++...... ..+..+. .-++   .       .+.+-
T Consensus         7 valVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            567889999999999999999998  99999998642  222334322110 1111110 0111   1       12345


Q ss_pred             CCCEEEEcCCCCCCCC-------Cc---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHH
Q 024248          114 GMDIVIIPAGVPRKPG-------MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKK  179 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g-------~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~  179 (270)
                      ..|++|..+|......       .+   ....+..|+.    ..+.+++.+++. ...+|++.|-....           
T Consensus        85 ~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S~~~~~-----------  152 (264)
T d1spxa_          85 KLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISSIASGL-----------  152 (264)
T ss_dssp             CCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTTSSS-----------
T ss_pred             CCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeeeecccc-----------
Confidence            7899999998642111       11   1223445554    445556665543 34455444432221           


Q ss_pred             hCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          180 VGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       180 ~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                       .+.|..-.++.++-.-..|-+.+|..++  +..|++..+-
T Consensus       153 -~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V~  190 (264)
T d1spxa_         153 -HATPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRVNSIS  190 (264)
T ss_dssp             -SCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -ccCCCchhhhhhhhhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence             1222222355554444567788888875  5556665554

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.0032  Score=48.48  Aligned_cols=61  Identities=15%  Similarity=0.118  Sum_probs=39.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      ||++||. |.+|+.+|..|+..++  .++ +++...+  ..++.....  .   .  ... .+.+.++|++|++.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~~--~~~~~~~~~--~---~--~~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFEK--ALRHQEEFG--S---E--AVP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTHH--HHHHHHHHC--C---E--ECC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHHH--HHHHHHHcC--C---c--ccc-cccccceeEEEecc
Confidence            7999997 9999999999998886  654 5554332  222222111  0   0  112 35677899998875

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.64  E-value=0.012  Score=48.52  Aligned_cols=155  Identities=19%  Similarity=0.208  Sum_probs=87.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCcc-ee-eeeccCCH-------HHHhCCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAV-VR-GFLGQQQL-------EDALTGMD  116 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~-~~-~i~~t~d~-------~~al~~AD  116 (270)
                      |.|+||++-+|..++..|++.|.  .|++.|.+...   ....++........ +. .+...++.       .+.+..-|
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            67889999999999999999999  99988775421   11122221100000 00 01001111       22345789


Q ss_pred             EEEEcCCCCCCCCC---c---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 024248          117 IVIIPAGVPRKPGM---T---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (270)
Q Consensus       117 vVIi~ag~~~~~g~---~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~  186 (270)
                      ++|..||.......   +   ....+..|+.    ..+.+++.+.+. ..+.||++|.-..          ..  +.|..
T Consensus        82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~----------~~--~~~~~  148 (244)
T d1edoa_          82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVG----------LI--GNIGQ  148 (244)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHH----------HH--CCTTC
T ss_pred             ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhh----------cC--CCCCC
Confidence            99999987543211   1   2233455544    445566666554 4577777764322          11  34434


Q ss_pred             CeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       187 kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      -.++.++-.-..|-+.+|.+++  +..|++.++-
T Consensus       149 ~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I~  180 (244)
T d1edoa_         149 ANYAAAKAGVIGFSKTAAREGA--SRNINVNVVC  180 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             HHHHHHHHHHHHChHHHHHHHh--hhCcEEEEEe
Confidence            4456655555667888888885  4556665554

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.64  E-value=0.0011  Score=54.32  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+||+|||| |..|.++|..|+++|+  +|+++|+..
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   37 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            469999998 9999999999999999  999999864

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.61  E-value=0.0084  Score=49.58  Aligned_cols=159  Identities=13%  Similarity=0.187  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcc-ee-eeeccCC-------HHHHhC
Q 024248           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAV-VR-GFLGQQQ-------LEDALT  113 (270)
Q Consensus        46 ~mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~-~~-~i~~t~d-------~~~al~  113 (270)
                      .+++.|+||+|  -+|..+|..|++.|.  +|++.|+++.. ..+.++........ +. .+....+       ..+.+.
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            34799999876  599999999999998  99999987532 12222221110000 00 0100111       123345


Q ss_pred             CCCEEEEcCCCCCCC-------CCchh---hhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCC
Q 024248          114 GMDIVIIPAGVPRKP-------GMTRD---DLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT  182 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~-------g~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg  182 (270)
                      .-|++|..+|.....       +.+..   ..+..|+.....+++.....- ..+.++++|.....            .+
T Consensus        86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~------------~~  153 (256)
T d1ulua_          86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE------------KV  153 (256)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT------------SB
T ss_pred             CceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc------------CC
Confidence            789999998764211       11111   234556655555555554332 24666666643221            12


Q ss_pred             CCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       183 ~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .|..-.++.++-.-..+-+.+|.+++  +..|++..+.
T Consensus       154 ~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~I~  189 (256)
T d1ulua_         154 VPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAIS  189 (256)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhc--ccCCEEeeec
Confidence            33333455554444557788888885  4566665554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0044  Score=48.14  Aligned_cols=130  Identities=15%  Similarity=0.226  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccC--CHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQ--QLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~--d~~~al~~ADvVIi~a  122 (270)
                      ..+|+|+|+ |.+|...+..+...|.  +++.+|.++.+- .+.++-- +  ..   +...+  ......++.|++|.++
T Consensus        31 G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lGa-d--~~---i~~~~~~~~~~~~~~~D~vid~~  101 (168)
T d1uufa2          31 GKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALGA-D--EV---VNSRNADEMAAHLKSFDFILNTV  101 (168)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHTC-S--EE---EETTCHHHHHTTTTCEEEEEECC
T ss_pred             CCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccCC-c--EE---EECchhhHHHHhcCCCceeeeee
Confidence            458999997 9999999988888887  778888865422 2222221 1  00   11111  1223346899999998


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee---chhhHHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV---TMLDVVRA  199 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~---t~ldt~r~  199 (270)
                      |.+..            +   .   ..+.-..|.+.++.++.|.+....+....+.    +...+++|.   +.-|..++
T Consensus       102 g~~~~------------~---~---~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~----~k~~~i~Gs~~~~~~d~~e~  159 (168)
T d1uufa2         102 AAPHN------------L---D---DFTTLLKRDGTMTLVGAPATPHKSPEVFNLI----MKRRAIAGSMIGGIPETQEM  159 (168)
T ss_dssp             SSCCC------------H---H---HHHTTEEEEEEEEECCCC-------CHHHHH----TTTCEEEECCSCCHHHHHHH
T ss_pred             ecchh------------H---H---HHHHHHhcCCEEEEeccCCCCcccccHHHHH----HCCcEEEEEeecCHHHHHHH
Confidence            75421            0   1   1222334788888887654422111111111    234567777   35555566


Q ss_pred             HHHHHHH
Q 024248          200 NTFVAEV  206 (270)
Q Consensus       200 ~~~lA~~  206 (270)
                      ..++++.
T Consensus       160 l~l~a~~  166 (168)
T d1uufa2         160 LDFCAEH  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            6666553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.59  E-value=0.0045  Score=51.27  Aligned_cols=37  Identities=19%  Similarity=0.124  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           45 PGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        45 ~~mKI~IIGa~G~--VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      +.+++.|+||+|.  +|..+|..|++.|.  +|++.+++++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~~   43 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRL   43 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCChH
Confidence            3458999997654  99999999999998  9999998764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0032  Score=49.44  Aligned_cols=68  Identities=15%  Similarity=0.190  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      ..++++|+|- |.+|..+|..+...|.  .|..+|+++.++... ..+.        + ....+++++..+|+||.+.|.
T Consensus        23 ~Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG--------~-~v~~~~~a~~~adivvtaTGn   89 (163)
T d1li4a1          23 AGKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEG--------Y-EVTTMDEACQEGNIFVTTTGC   89 (163)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTT--------C-EECCHHHHTTTCSEEEECSSC
T ss_pred             cCCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCc--------e-EeeehhhhhhhccEEEecCCC
Confidence            3458999997 9999999999999998  999999986433211 1111        0 123578999999999998775


Q ss_pred             C
Q 024248          125 P  125 (270)
Q Consensus       125 ~  125 (270)
                      .
T Consensus        90 ~   90 (163)
T d1li4a1          90 I   90 (163)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.57  E-value=0.018  Score=47.24  Aligned_cols=156  Identities=13%  Similarity=0.121  Sum_probs=82.8

Q ss_pred             eEEEEcCCCchHHHHHHHHH---hCCCccEEEEEeCCCChhH-HHHhhccccCcceee----eeccCCHHHH--------
Q 024248           48 KVAVLGAAGGIGQPLAMLMK---INPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRG----FLGQQQLEDA--------  111 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~---~~g~~~eV~LvD~~~~~~~-~~dl~~~~~~~~~~~----i~~t~d~~~a--------  111 (270)
                      +|.|+||++-+|..+|..|+   ..|.  .|++.+++++..+ ..++....  ..+..    +....+.+++        
T Consensus         4 tilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   79 (248)
T d1snya_           4 SILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEGVT   79 (248)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHHHh
Confidence            59999999999999998775   4677  9999999875332 22332211  11111    1111122111        


Q ss_pred             -hCCCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHH----HHHHHHHHhHhC----------CCCEEEEecCCCCCc
Q 024248          112 -LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCC----------PKAIVNLISNPVNST  169 (270)
Q Consensus       112 -l~~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~----------p~a~viv~sNPv~~~  169 (270)
                       ....|++|..||.....+    .+   ..+.+..|+..    .+.+.+.+++..          ..+.+++++.-....
T Consensus        80 ~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~  159 (248)
T d1snya_          80 KDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSI  159 (248)
T ss_dssp             GGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCS
T ss_pred             hcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence             235899999998743322    11   12244556443    445555555431          245666665433210


Q ss_pred             HHHHHHHHHHhCCCCCCC--eeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          170 VPIAAEVFKKVGTYDPKR--LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       170 ~~i~t~~~~~~sg~p~~k--viG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                                 .+.+...  .|+.++..-..|-+.+|..+.  +..|++..+-
T Consensus       160 -----------~~~~~~~~~~Y~aSKaal~~lt~~la~e~~--~~gI~vn~v~  199 (248)
T d1snya_         160 -----------QGNTDGGMYAYRTSKSALNAATKSLSVDLY--PQRIMCVSLH  199 (248)
T ss_dssp             -----------TTCCSCCCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEC
T ss_pred             -----------CCCCCCChHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEcC
Confidence                       0111111  244555444556777887763  4556665554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.57  E-value=0.012  Score=48.90  Aligned_cols=157  Identities=18%  Similarity=0.139  Sum_probs=83.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh---hHHHHhhccccCcceeeee-ccCC----------HHHHh
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~---~~~~dl~~~~~~~~~~~i~-~t~d----------~~~al  112 (270)
                      ..+.|+||++-+|..+|..|++.|.  +|++.+.....   ....++....  .....+. .-+|          ..+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            3688999999999999999999999  99886654421   1122232211  1110000 0111          12234


Q ss_pred             CCCCEEEEcCCCCCCCCC---c---hhhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 024248          113 TGMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g~---~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~  185 (270)
                      -.-|++|..+|.......   +   ....+..|+.....+++.+.+.. .++.+++++.....           ..++|.
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~-----------~~~~~~  151 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV-----------MTGIPN  151 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT-----------CCSCCS
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccc-----------ccCCCC
Confidence            578999999987532211   1   22345566655555555554433 23444444322221           112332


Q ss_pred             CCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       186 ~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .-.++.++-.-..+-+.+|..++  +..|++.++-
T Consensus       152 ~~~Y~asK~al~~l~r~lA~e~~--~~gIrvN~I~  184 (259)
T d1ja9a_         152 HALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCIA  184 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHHh--hcCeEEeccC
Confidence            22344444444567888999886  4456555544

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.52  E-value=0.0012  Score=54.99  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..++.||+|||| |..|.+.|..|+++|+  +|+++|...
T Consensus        27 ~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            445669999998 9999999999999999  999999864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.022  Score=46.63  Aligned_cols=157  Identities=12%  Similarity=0.103  Sum_probs=84.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccC-------CHHHHhCCCCE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQ-------QLEDALTGMDI  117 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~-------d~~~al~~ADv  117 (270)
                      +.+.|+||++-+|..++..|+++|.  .|++.|++++..  ...++......... ......       .........|.
T Consensus         6 KvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGNNCVFAPA-DVTSEKDVQTALALAKGKFGRVDV   82 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCTTEEEEEC-CTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCcccccc-cccccccccccccccccccccccc
Confidence            3567999999999999999999999  999999987532  22333221000000 000000       11223456788


Q ss_pred             EEEcCCCCCCCC-------C-----chhhhHHhhHHHHHHHH----HHHhHhC-----CCCEEEEecCCCCCcHHHHHHH
Q 024248          118 VIIPAGVPRKPG-------M-----TRDDLFNINAGIVKTLC----EGIAKCC-----PKAIVNLISNPVNSTVPIAAEV  176 (270)
Q Consensus       118 VIi~ag~~~~~g-------~-----~r~~~~~~N~~i~~~i~----~~i~~~~-----p~a~viv~sNPv~~~~~i~t~~  176 (270)
                      ++..++.....+       .     .....+..|+.....+.    +.+.+..     ..+.||++|....         
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~---------  153 (248)
T d2o23a1          83 AVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAA---------  153 (248)
T ss_dssp             EEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHH---------
T ss_pred             cccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhh---------
Confidence            887654321111       0     11233455654444444    4443221     2356776664322         


Q ss_pred             HHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       177 ~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                        .. +.|..-.++.++-.-..|-+.+|.+++  +..|++..+-
T Consensus       154 --~~-~~~~~~~Y~asKaal~~lt~~la~e~~--~~gIrvN~I~  192 (248)
T d2o23a1         154 --FE-GQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRVMTIA  192 (248)
T ss_dssp             --HH-CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             --cc-CCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcceeeec
Confidence              11 233333455555444567888999885  4556665553

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.00046  Score=53.03  Aligned_cols=62  Identities=10%  Similarity=0.063  Sum_probs=35.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      |++||+ |.+|++++..|...+.  .+.+++++.++  ..++.+... .     . ..+.+++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~~~--~~~l~~~~~-~-----~-~~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSIDR--ARNLAEVYG-G-----K-AATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSHHH--HHHHHHHTC-C-----C-CCSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCChhh--hcchhhccc-c-----c-ccchhhhhccCcEEEEec
Confidence            689997 9999999987765443  33578876432  333333211 0     0 123457789999999986

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0077  Score=47.52  Aligned_cols=56  Identities=21%  Similarity=0.404  Sum_probs=44.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      ...+|+|||.+..||..++.+|+++|.  .|+.++..                       |.++.+-+++||+||.++|.
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~-----------------------t~~l~~~~~~aDivi~a~G~   92 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK-----------------------TAHLDEEVNKGDILVVATGQ   92 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSSHHHHHTTCSEEEECCCC
T ss_pred             ccceEEEEecCCccchHHHHHHHhccC--ceEEEecc-----------------------cccHHHHHhhccchhhcccc
Confidence            456899999988999999999999987  88888753                       23455667788888888776


Q ss_pred             C
Q 024248          125 P  125 (270)
Q Consensus       125 ~  125 (270)
                      +
T Consensus        93 ~   93 (170)
T d1a4ia1          93 P   93 (170)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.26  E-value=0.04  Score=42.22  Aligned_cols=34  Identities=24%  Similarity=0.166  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .+|+|+|+ |.+|...+..++..|.  +|+.+|.++.
T Consensus        28 ~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~   61 (170)
T d1e3ja2          28 TTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPR   61 (170)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHH
T ss_pred             CEEEEEcc-cccchhhHhhHhhhcc--cccccchHHH
Confidence            48999996 9999999998888897  8999999754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.25  E-value=0.0023  Score=51.94  Aligned_cols=33  Identities=33%  Similarity=0.478  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +||+|||| |.-|.+.|+.|++.|+  +|+++|...
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            48999998 9999999999999999  999999764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.044  Score=45.12  Aligned_cols=156  Identities=15%  Similarity=0.069  Sum_probs=80.0

Q ss_pred             eEE-EEcCCCchHHHHHHHHHh---CCCccEEEEEeCCCChh--HHHHhhccccCcceeeee-ccCCH---HHHh-----
Q 024248           48 KVA-VLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFL-GQQQL---EDAL-----  112 (270)
Q Consensus        48 KI~-IIGa~G~VGs~la~~l~~---~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~-~t~d~---~~al-----  112 (270)
                      ||+ |+||++-+|..+|..|++   +|.  .|++.|++++..  ...++........+..+. .-++.   ++.+     
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            554 559999999999999975   677  999999976422  223333211111111111 11121   1111     


Q ss_pred             ------CCCCEEEEcCCCCCC--CC----Cc---hhhhHHhhHHHHHHHHHHHhHhCC-----CCEEEEecCCCCCcHHH
Q 024248          113 ------TGMDIVIIPAGVPRK--PG----MT---RDDLFNINAGIVKTLCEGIAKCCP-----KAIVNLISNPVNSTVPI  172 (270)
Q Consensus       113 ------~~ADvVIi~ag~~~~--~g----~~---r~~~~~~N~~i~~~i~~~i~~~~p-----~a~viv~sNPv~~~~~i  172 (270)
                            -+.|++|..+|....  .+    .+   ....+..|+.....+++.+.++-.     .+.|+++|.-...    
T Consensus        85 ~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~----  160 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL----  160 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT----
T ss_pred             hhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc----
Confidence                  134577777775321  11    11   223466777766666666654431     3456666532221    


Q ss_pred             HHHHHHHhCCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEcc
Q 024248          173 AAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG  221 (270)
Q Consensus       173 ~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G~  221 (270)
                              .++|..-.++.++-.-..|-+.||.+    +..|++..+..
T Consensus       161 --------~~~~~~~~Y~asKaal~~lt~~la~e----~~gIrVn~v~P  197 (259)
T d1oaaa_         161 --------QPYKGWGLYCAGKAARDMLYQVLAAE----EPSVRVLSYAP  197 (259)
T ss_dssp             --------SCCTTCHHHHHHHHHHHHHHHHHHHH----CTTEEEEEEEC
T ss_pred             --------CCCccchHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEc
Confidence                    12232222444433333455666766    45687777764

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0055  Score=48.17  Aligned_cols=57  Identities=21%  Similarity=0.454  Sum_probs=45.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ....+|+|+|.+..||..++.+|..++.  .|+.++..                       |.++++.+++||+||.++|
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G   89 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVG   89 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhcc
Confidence            3456899999988999999999999987  88877542                       2355667789999999888


Q ss_pred             CC
Q 024248          124 VP  125 (270)
Q Consensus       124 ~~  125 (270)
                      .+
T Consensus        90 ~p   91 (166)
T d1b0aa1          90 KP   91 (166)
T ss_dssp             CT
T ss_pred             Cc
Confidence            65

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.22  E-value=0.0025  Score=52.09  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |+||+|||| |..|.++|..|++.|+ ..|++++...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            589999998 9999999999999994 2889999875

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.22  E-value=0.0025  Score=54.82  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .+||+|||| |.-|.+.|..|+++|+  +|.+++.+..
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCC
Confidence            469999998 9999999999999998  9999998764

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.19  E-value=0.0022  Score=50.87  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |||+|||| |++|..+|..|...+...+|+++++..
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            89999998 999999999998765444999999764

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.16  E-value=0.1  Score=42.35  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ..|+||++-+|..+|..|++.|.  +|++.|++.+
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~~   36 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSE   36 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCch
Confidence            57899999999999999999999  9999999864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.16  E-value=0.0021  Score=50.33  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.||+|||| |..|...|..|++.|+ ++|+++|+..
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence            359999998 9999999999999998 2599999875

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.12  E-value=0.0021  Score=53.13  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |+|||| |.+|.++|+.|+++|.  +|+++|.+.
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            999998 9999999999999998  999999864

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.12  E-value=0.0039  Score=45.58  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..|.||+|||| |++|.-+|..+...|.  +|+++++.+
T Consensus        20 ~~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             hcCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            33569999998 9999999999999998  999999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.10  E-value=0.0041  Score=46.06  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.+|+|||| |++|.-+|..|...|.  +|++++..+
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            458999998 9999999999999998  999999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.05  Score=41.78  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      -+|+|+|+ |.+|...+..+...|. ..|+.+|.++.
T Consensus        28 d~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~   62 (171)
T d1pl8a2          28 HKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSAT   62 (171)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHH
T ss_pred             CEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHH
Confidence            48999997 9999999988888885 48999999754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.004  Score=45.61  Aligned_cols=34  Identities=32%  Similarity=0.422  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.||+|||+ |++|.-+|..|...|.  +|+++++.+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            458999998 9999999999999998  999999875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.016  Score=44.05  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      +.+.++|+|||| |.+|..-+..|+..|.  +|++++..
T Consensus        10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEE
T ss_pred             eeCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            445669999998 9999999999999998  99999653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.99  E-value=0.0045  Score=45.56  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.||+|+|| |++|.-+|..|...|.  +|+++++.+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            569999998 9999999999998888  999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.98  E-value=0.0056  Score=45.30  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +..||+|+|| |++|.-+|..|...|.  +|++++..+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            3458999998 9999999999999998  999999865

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0047  Score=45.72  Aligned_cols=35  Identities=11%  Similarity=0.160  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+.|++|||| |++|.-+|..|...|.  +|++++..+
T Consensus        22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            3469999998 9999999999999998  999999865

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.95  E-value=0.0065  Score=47.06  Aligned_cols=68  Identities=24%  Similarity=0.255  Sum_probs=40.9

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC-CCCEEEEcC
Q 024248           46 GFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~-la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~-~ADvVIi~a  122 (270)
                      .|||+|||+ |.+|.. ....+...+.. +++++|.++....  .+.+....+     ...+|+++.++ +.|+|+++.
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~--~~~~~~~~~-----~~~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLG--TLATRYRVS-----ATCTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTE-EEEEECSCHHHHH--HHHHHTTCC-----CCCSSTTGGGGGCCSEEEECS
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCc-EEEEEECCHHHHH--HHHHhcccc-----cccccHHHhcccccceecccc
Confidence            379999997 999976 45566555433 8889988754221  222110001     11245656554 789999975

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.018  Score=48.03  Aligned_cols=115  Identities=18%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhC-CCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCC----------HHHHh
Q 024248           47 FKV-AVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQ----------LEDAL  112 (270)
Q Consensus        47 mKI-~IIGa~G~VGs~la~~l~~~-g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d----------~~~al  112 (270)
                      ++| .|+||++-+|..+|..|++. |.  .|++.+++++..  .+.+|........... ..-+|          ..+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~-~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQ-LDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEE-CCTTCHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEE-EecCCHHHHHHHHHHHHHhc
Confidence            577 57799999999999998874 77  999999986432  2233332211111100 00112          22234


Q ss_pred             CCCCEEEEcCCCCCCCC-C--ch---hhhHHhhHHHHHHHHHHHhHhC-CCCEEEEecC
Q 024248          113 TGMDIVIIPAGVPRKPG-M--TR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (270)
Q Consensus       113 ~~ADvVIi~ag~~~~~g-~--~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~sN  164 (270)
                      ..-|++|..||...... .  +.   ...+..|+.....+++.+-..- +.+.+++++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            57899999998743221 1  11   2245677777666766665443 3567777764

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.0085  Score=47.08  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcCCCchHHH-HHHHHHhCCCccEEE-EEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEE
Q 024248           44 SPGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVI  119 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~-la~~l~~~g~~~eV~-LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVI  119 (270)
                      ++++||+|||+ |.+|.. .+..+...+..-+|+ ++|.++...  ..+.+....+     ...+|+++.++  +.|+|+
T Consensus         1 MkkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~--~~~~~~~~~~-----~~~~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           1 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHA--EEFAKMVGNP-----AVFDSYEELLESGLVDAVD   72 (181)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH--HHHHHHHSSC-----EEESCHHHHHHSSCCSEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh--hhhhcccccc-----ceeeeeeccccccccceee
Confidence            35789999997 999986 455665533222554 678765332  2222110011     11357877775  689999


Q ss_pred             EcC
Q 024248          120 IPA  122 (270)
Q Consensus       120 i~a  122 (270)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            975

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.87  E-value=0.014  Score=45.74  Aligned_cols=70  Identities=11%  Similarity=0.257  Sum_probs=43.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEE-EEeCCCChhHHHHhhccccC-cceeeeeccCCHHHHh--CCCCEEEEc
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTN-AVVRGFLGQQQLEDAL--TGMDIVIIP  121 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~-LvD~~~~~~~~~dl~~~~~~-~~~~~i~~t~d~~~al--~~ADvVIi~  121 (270)
                      ++||+|||+ |.+|...+..+...+-+ +|+ ++|++++.+.  ++...... ....   ..+|+++.+  .+.|+|+++
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~--~~~~~~~~~~~~~---~~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAK--AFATANNYPESTK---IHGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHHTTCCTTCE---EESSHHHHHHCTTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccc--cchhcccccccee---ecCcHHHhhhccccceeeec
Confidence            479999997 99999998878766443 555 6687654322  22211001 1111   235787766  468999997


Q ss_pred             C
Q 024248          122 A  122 (270)
Q Consensus       122 a  122 (270)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.76  E-value=0.0083  Score=46.18  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ..+|+|+|+ |.+|...+..++..|.  +|+.+|+++.
T Consensus        28 g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~   62 (166)
T d1llua2          28 GQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDA   62 (166)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHH
T ss_pred             CCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhh
Confidence            458999997 9999999998888886  9999998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0053  Score=50.20  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..||+|||| |.-|.+.|..|++.|+  +|++++...
T Consensus         5 ~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            458999998 9999999999999999  999998765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.73  E-value=0.034  Score=39.31  Aligned_cols=72  Identities=17%  Similarity=0.374  Sum_probs=48.6

Q ss_pred             CCCCeEEEEcCCCchHH-HHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs-~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .+.+||-+||- |-+|. ++|..|+++|+  +|...|..... ....|.+..  ..+  +. -.+ .+.+.++|+||.+.
T Consensus         6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~~~~L~~~G--i~v--~~-g~~-~~~i~~~d~vV~S~   75 (96)
T d1p3da1           6 RRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADGV-VTQRLAQAG--AKI--YI-GHA-EEHIEGASVVVVSS   75 (96)
T ss_dssp             TTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCSH-HHHHHHHTT--CEE--EE-SCC-GGGGTTCSEEEECT
T ss_pred             hhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCCh-hhhHHHHCC--CeE--EE-CCc-cccCCCCCEEEECC
Confidence            44568999998 77784 57999999999  99999997532 223343321  111  11 122 35578999999998


Q ss_pred             CCC
Q 024248          123 GVP  125 (270)
Q Consensus       123 g~~  125 (270)
                      +.+
T Consensus        76 AI~   78 (96)
T d1p3da1          76 AIK   78 (96)
T ss_dssp             TSC
T ss_pred             CcC
Confidence            776

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.73  E-value=0.0048  Score=47.00  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +||+|||| |++|..+|..|.+.+.--+|+++|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            49999998 999999999998876544999999875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.70  E-value=0.0074  Score=45.27  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.||+|||| |++|.-+|..|...|.  +|++++...
T Consensus        35 ~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            459999998 9999999999999998  999999865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.65  E-value=0.0057  Score=44.57  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |.|++|+|| |++|.-+|..|...|.  +|++++..+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            459999998 9999999999999998  999999865

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.63  E-value=0.016  Score=50.49  Aligned_cols=73  Identities=16%  Similarity=0.260  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~-~~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ....++|||+ |..+...+..+. ..+ .++|.++|++.+..  .+.++...   ..+. +...+++++++++||+|+.+
T Consensus       127 da~~l~iiG~-G~QA~~~~~a~~~v~~-i~~V~v~~r~~~~~~~~~~~l~~~---~g~~-v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         127 NARKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEY---SGLT-IRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             TCCEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTC---TTCE-EEECSSHHHHHTTCSEEEEC
T ss_pred             CCceEEEEcc-cHHHHHHHHHHhhhcc-eeeeEEEecChHHHHHHHHhhhhc---cCCC-ceecCCHHHHHhcCCceeec
Confidence            3458999997 999987776554 455 57999999986422  23344321   2222 23356899999999999886


Q ss_pred             CC
Q 024248          122 AG  123 (270)
Q Consensus       122 ag  123 (270)
                      ..
T Consensus       201 Ta  202 (340)
T d1x7da_         201 TA  202 (340)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.59  E-value=0.00073  Score=54.56  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----ccEEEEEeCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVV   81 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~----~~eV~LvD~~   81 (270)
                      |||+|||| |-+|.+.|+.|+++|+    ..++.+++..
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            89999998 9999999999998875    2467777754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.59  E-value=0.0049  Score=48.44  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ||+|||| |..|.+.|..|++.|+ .+|++++...
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            8999998 9999999999999996 2699999865

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0084  Score=51.32  Aligned_cols=105  Identities=22%  Similarity=0.228  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHH----hCCCc-----cEEEEEeCCCC--hhHHHHhhccc--cCcceeeeeccCCHHHHhC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMK----INPLV-----SVLHLYDVVNT--PGVTADISHMD--TNAVVRGFLGQQQLEDALT  113 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~----~~g~~-----~eV~LvD~~~~--~~~~~dl~~~~--~~~~~~~i~~t~d~~~al~  113 (270)
                      .||++.|| |.-|..++.++.    ..|+.     +.++++|.+-.  .+. .|..+..  .+.....-....+++++++
T Consensus        26 ~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r-~~~~~~~k~~~a~~~~~~~~~~L~e~i~  103 (294)
T d1pj3a1          26 HKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGR-KAKIDSYQEPFTHSAPESIPDTFEDAVN  103 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTC-SSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCC-CcccHHHHHHhhccccccchhHHHHHHH
Confidence            48999998 999999887654    34542     46999999632  111 1111110  0100000011246778776


Q ss_pred             --CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          114 --GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       114 --~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                        +.|++|-+.+.+.-        +      .+++++.+.+.+++.+|+-.|||..
T Consensus       104 ~~kptvliG~S~~~g~--------f------t~evi~~Ma~~~~~PIIFaLSNPt~  145 (294)
T d1pj3a1         104 ILKPSTIIGVAGAGRL--------F------TPDVIRAMASINERPVIFALSNPTA  145 (294)
T ss_dssp             HHCCSEEEECCCSSCC--------S------CHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hcCCceEEEecCCCCc--------C------CHHHHHHHHhcCCCcEEEEccCCCC
Confidence              88888887654421        1      1567777888899999999999964

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.56  E-value=0.013  Score=45.77  Aligned_cols=68  Identities=19%  Similarity=0.163  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      ..++++|+|= |.+|..+|..+...|.  .|..+++++..+... ..+.  +       .....+++++.+|+||.+.|.
T Consensus        22 aGk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdG--f-------~v~~~~~a~~~aDi~vTaTGn   88 (163)
T d1v8ba1          22 SGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEG--F-------NVVTLDEIVDKGDFFITCTGN   88 (163)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTT--C-------EECCHHHHTTTCSEEEECCSS
T ss_pred             cCCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcC--C-------ccCchhHccccCcEEEEcCCC
Confidence            3468999998 9999999999998888  999999986433211 1121  1       123578999999999998765


Q ss_pred             C
Q 024248          125 P  125 (270)
Q Consensus       125 ~  125 (270)
                      .
T Consensus        89 ~   89 (163)
T d1v8ba1          89 V   89 (163)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.02  Score=44.99  Aligned_cols=79  Identities=20%  Similarity=0.251  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhcc-c-cCcceeeeecc---CCHHHHhCCCCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM-D-TNAVVRGFLGQ---QQLEDALTGMDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~-~-~~~~~~~i~~t---~d~~~al~~ADvV  118 (270)
                      +..+|+|+|+ |-.|.++++.|...+. .++++++++.... ...++.+. . .......+...   .++.+.+..+|+|
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii   94 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL   94 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence            4458999998 9999999999998875 6999999986422 22222211 0 01111111111   2345567899999


Q ss_pred             EEcCCCC
Q 024248          119 IIPAGVP  125 (270)
Q Consensus       119 Ii~ag~~  125 (270)
                      |.+....
T Consensus        95 IN~Tp~G  101 (182)
T d1vi2a1          95 TNGTKVG  101 (182)
T ss_dssp             EECSSTT
T ss_pred             ccccCCc
Confidence            9986543

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.51  E-value=0.016  Score=47.62  Aligned_cols=163  Identities=17%  Similarity=0.137  Sum_probs=85.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeee-ccCC---H-------HHHhC-
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDALT-  113 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~-~t~d---~-------~~al~-  113 (270)
                      +..|.|+||++-+|..++..|++.|..-.|++.+++++...  ++.... ...+..+. .-+|   .       .+.+. 
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~--~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   79 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT--ELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH--HHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHH--HHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence            45799999999999999999999986337888888754322  222211 11111110 0111   1       11222 


Q ss_pred             -CCCEEEEcCCCCCCCC----Cc---hhhhHHhhHHH----HHHHHHHHhHhC----------CCCEEEEecCCCCCcHH
Q 024248          114 -GMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCC----------PKAIVNLISNPVNSTVP  171 (270)
Q Consensus       114 -~ADvVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~----------p~a~viv~sNPv~~~~~  171 (270)
                       +.|++|..||.....+    .+   ....+..|+..    ++.+++.+++..          ..+.+++++......  
T Consensus        80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~--  157 (250)
T d1yo6a1          80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI--  157 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS--
T ss_pred             CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccc--
Confidence             4899999999643211    12   22345556543    455566665432          124555554322210  


Q ss_pred             HHHHHHHHhCCCC--CCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          172 IAAEVFKKVGTYD--PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       172 i~t~~~~~~sg~p--~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                        +   ....+.+  +.-.|+.++..-..|-+.+|+++  .+..|++..+-
T Consensus       158 --~---~~~~~~~~~~~~aY~aSKaal~~l~~~la~el--~~~gI~v~~i~  201 (250)
T d1yo6a1         158 --T---DNTSGSAQFPVLAYRMSKAAINMFGRTLAVDL--KDDNVLVVNFC  201 (250)
T ss_dssp             --T---TCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHT--GGGTCEEEEEE
T ss_pred             --c---CCcccccchhHHHHHHHHHHHHHHHHHHHHHh--cccCeEEEEEe
Confidence              0   0001111  11124555555566788888887  45667766664

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0084  Score=47.31  Aligned_cols=79  Identities=20%  Similarity=0.243  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh----hHHHHhhccccCcceeeeeccCCHHHHhCCCCEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~----~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      .+..+|+|||.|.-||..++.+|+.+|.  .|+..+.+...    .....+.+.. ...+..+ ..+.+++.+..||+||
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHH-VEDLGEY-SEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCE-EEEEEEC-CHHHHHHHHHHCSEEE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeec-ccccccc-chhHHhhccccCCEEE
Confidence            4456999999988899999999999987  89999876321    0011111110 0111111 1123677888999999


Q ss_pred             EcCCCCC
Q 024248          120 IPAGVPR  126 (270)
Q Consensus       120 i~ag~~~  126 (270)
                      .++|.+.
T Consensus       103 savG~p~  109 (171)
T d1edza1         103 TGVPSEN  109 (171)
T ss_dssp             ECCCCTT
T ss_pred             EccCCCc
Confidence            9998763

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.49  E-value=0.0081  Score=51.38  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=30.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ||+|||| |.-|...|..|++.+...+|+++++..
T Consensus         6 rVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           6 KIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             eEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            7999998 999999999888877656999999875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.49  E-value=0.0041  Score=51.74  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ||+|||| |.+|.++|..|++.|+  +|+++|...
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            6999998 9999999999999999  999999875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0096  Score=44.06  Aligned_cols=34  Identities=18%  Similarity=0.089  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.||+|+|+ |++|.-+|..|...|.  +|+++++.+
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            358999998 9999999999999998  999999975

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.41  E-value=0.032  Score=43.11  Aligned_cols=73  Identities=11%  Similarity=0.089  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccc---cCcceeeeeccCCHHHHhCCCCEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD---TNAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~---~~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      +..||+++|-...|..+++..+...|.  +|+++-...-  .....+.....   ....   +..+.|+++++++||+|.
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGS---FELLHDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCE---EEEESCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccce---EEEecCHHHHhhhccEEe
Confidence            457999999866777888888888888  9999976531  11222211110   0112   234568899999999988


Q ss_pred             EcC
Q 024248          120 IPA  122 (270)
Q Consensus       120 i~a  122 (270)
                      ...
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.38  E-value=0.0085  Score=49.11  Aligned_cols=35  Identities=17%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI-~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ||| .|+||++-+|..+|..|++.|.  +|++.|+++.
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECChH
Confidence            665 7779999999999999999999  9999999753

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.37  E-value=0.012  Score=43.23  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .|.||+|||+ |++|.-+|..++..|.  +|+++...+
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            4569999998 9999999999999998  999999765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.35  E-value=0.021  Score=44.62  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=45.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHh------CCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al------~~ADvV  118 (270)
                      .-+|+|+|+ |-||...+..+...|. ..|+.+|.++.+. .+.++-- +.  .+.  ....++.+.+      +++|+|
T Consensus        28 g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa-~~--~i~--~~~~~~~~~v~~~t~g~G~D~v  100 (174)
T d1jqba2          28 GSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGA-TD--ILN--YKNGHIEDQVMKLTNGKGVDRV  100 (174)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTC-SE--EEC--GGGSCHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCc-cc--ccc--ccchhHHHHHHHHhhccCcceE
Confidence            347999997 9999998888887775 3799999875422 2233321 10  000  0122333322      459999


Q ss_pred             EEcCCCC
Q 024248          119 IIPAGVP  125 (270)
Q Consensus       119 Ii~ag~~  125 (270)
                      |.++|.+
T Consensus       101 id~~g~~  107 (174)
T d1jqba2         101 IMAGGGS  107 (174)
T ss_dssp             EECSSCT
T ss_pred             EEccCCH
Confidence            9998754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.31  E-value=0.0099  Score=43.73  Aligned_cols=33  Identities=21%  Similarity=0.147  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+|+|+|| |++|.-+|..|...|.  +|+++++.+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            48999998 9999999999999998  999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.29  E-value=0.009  Score=44.13  Aligned_cols=34  Identities=18%  Similarity=-0.040  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |.|++|||| |++|.-+|..|...|.  +|+++..+.
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            458999998 9999999999999998  999998764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.035  Score=42.99  Aligned_cols=74  Identities=12%  Similarity=0.276  Sum_probs=46.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc-CcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~-~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .+.++|+|+|+ |-.+.++++.|...|.  +|++++++..+++  ++..... ...+..+  ..+ +.....+|+||.+.
T Consensus        16 ~~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~--~l~~~~~~~~~~~~~--~~~-~~~~~~~dliIN~T   87 (170)
T d1nyta1          16 RPGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAE--ELAKLFAHTGSIQAL--SMD-ELEGHEFDLIINAT   87 (170)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHHHTGGGSSEEEC--CSG-GGTTCCCSEEEECC
T ss_pred             CCCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHH--HHHHHHhhccccccc--ccc-cccccccceeeccc
Confidence            34568999998 9999999999999987  8999998754332  2221100 1112111  111 12346899999986


Q ss_pred             CCC
Q 024248          123 GVP  125 (270)
Q Consensus       123 g~~  125 (270)
                      ..+
T Consensus        88 p~G   90 (170)
T d1nyta1          88 SSG   90 (170)
T ss_dssp             SCG
T ss_pred             ccC
Confidence            443

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.1  Score=43.58  Aligned_cols=157  Identities=12%  Similarity=0.119  Sum_probs=81.3

Q ss_pred             CeEE-EEcCCCchHHHHHHHHHhCCCccEEEEEeCC---CC-hhHHHHhhcc-c-cCcceeeee-ccCCH---HHHh---
Q 024248           47 FKVA-VLGAAGGIGQPLAMLMKINPLVSVLHLYDVV---NT-PGVTADISHM-D-TNAVVRGFL-GQQQL---EDAL---  112 (270)
Q Consensus        47 mKI~-IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~---~~-~~~~~dl~~~-~-~~~~~~~i~-~t~d~---~~al---  112 (270)
                      +||+ |+||++-+|..+|..|++.|.  .++++++.   .. .....+.... . ....+..+. .-+|.   ++++   
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            4776 559999999999999999987  65555532   11 1111111111 0 011111110 11122   1111   


Q ss_pred             --CCCCEEEEcCCCCCCCCC---c---hhhhHHhhHH----HHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHh
Q 024248          113 --TGMDIVIIPAGVPRKPGM---T---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV  180 (270)
Q Consensus       113 --~~ADvVIi~ag~~~~~g~---~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~  180 (270)
                        ...|++|..+|.......   +   ....+..|+.    ..+.+++.+.+.. .+.||++|.-...            
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS~~g~------------  146 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGL------------  146 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGT------------
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEechhhc------------
Confidence              358999999886532221   1   2233455644    4566667776654 4666666533221            


Q ss_pred             CCCCCCCeeeechhhHHHHHHHHHHHhCCCCCccceEEEc
Q 024248          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (270)
Q Consensus       181 sg~p~~kviG~t~ldt~r~~~~lA~~l~v~~~~v~~~V~G  220 (270)
                      .+.|..-.++.++-.-..|-+.||.++  .+..|++.++-
T Consensus       147 ~~~~~~~~Y~asKaal~~l~~~la~El--~~~gIrVn~V~  184 (285)
T d1jtva_         147 MGLPFNDVYCASKFALEGLCESLAVLL--LPFGVHLSLIE  184 (285)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHH--GGGTEEEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHh--hccCcEEEEEe
Confidence            123333335555444456777788876  34556655443

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=95.23  E-value=0.18  Score=41.32  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=28.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.|+||++-+|..+|..|++.|.  +|++.|++.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            35669999999999999999998  999988765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.19  E-value=0.026  Score=43.75  Aligned_cols=70  Identities=20%  Similarity=0.269  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      +..||+|+|+ |-.+.++++.|.+.|. ++|.+++++.++++  .|........   +   ..+  ...++|+||.|...
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~ka~--~L~~~~~~~~---~---~~~--~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKTGQ--YLAALYGYAY---I---NSL--ENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHHHH--HHHHHHTCEE---E---SCC--TTCCCSEEEECSST
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHHHH--HHHHhhhhhh---h---hcc--cccchhhheecccc
Confidence            4458999998 9999999999999886 58999998754332  2222100011   1   111  13579999998654


Q ss_pred             CC
Q 024248          125 PR  126 (270)
Q Consensus       125 ~~  126 (270)
                      +.
T Consensus        84 Gm   85 (167)
T d1npya1          84 GM   85 (167)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.19  E-value=0.076  Score=36.93  Aligned_cols=69  Identities=23%  Similarity=0.264  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCchHH-HHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCCC
Q 024248           47 FKVAVLGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (270)
Q Consensus        47 mKI~IIGa~G~VGs-~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~~  125 (270)
                      |||=++|- |-+|. .+|..|+++|+  +|...|+.... ....|.....  .+   ....+ .+.++++|+||.+.+.+
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~t~~L~~~Gi--~i---~~gh~-~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETE-RTAYLRKLGI--PI---FVPHS-ADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTTC--CE---ESSCC-TTSCCCCSEEEECTTCC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCCh-hHHHHHHCCC--eE---Eeeec-ccccCCCCEEEEecCcC
Confidence            79999998 77887 57899999999  99999987532 2223443321  11   11123 25578999999998776

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.14  E-value=0.015  Score=42.23  Aligned_cols=34  Identities=12%  Similarity=0.103  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.+|+|+|+ |++|.-+|..|...+.  +|.+++..+
T Consensus        22 ~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            469999998 9999999999999887  999999875

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.13  E-value=0.045  Score=42.85  Aligned_cols=80  Identities=19%  Similarity=0.199  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhc-ccc----Ccce-----eeeeccCCHHHHhCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDT----NAVV-----RGFLGQQQLEDALTG  114 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~-~~~----~~~~-----~~i~~t~d~~~al~~  114 (270)
                      +++||+|.|- |.+|..++..+..++-.+-|.+.|..+......-+.+ .+.    ....     ..+....++.+...+
T Consensus         1 M~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (172)
T d2czca2           1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK   79 (172)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             CcEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhcc
Confidence            3579999997 9999999988887765544555565443211110110 000    0000     001223356677889


Q ss_pred             CCEEEEcCCCC
Q 024248          115 MDIVIIPAGVP  125 (270)
Q Consensus       115 ADvVIi~ag~~  125 (270)
                      +|+|+.|.|..
T Consensus        80 vDvViEcTG~f   90 (172)
T d2czca2          80 VDIIVDATPGG   90 (172)
T ss_dssp             CSEEEECCSTT
T ss_pred             CCEEEECCCCC
Confidence            99999998643

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=95.12  E-value=0.054  Score=43.28  Aligned_cols=35  Identities=20%  Similarity=0.194  Sum_probs=28.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCc-cEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLV-SVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~-~eV~LvD~~~   82 (270)
                      |||.|||. |--|+.++..+...++. -+.+.+|.|.
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~   36 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL   36 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH
Confidence            68999998 99999999988876653 2778888763

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.10  E-value=0.099  Score=40.55  Aligned_cols=99  Identities=19%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccC-CHHH-----HhCCCCE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQ-QLED-----ALTGMDI  117 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~-d~~~-----al~~ADv  117 (270)
                      +..+|+|+|+ |-||...+..+...|. ..|+..|.++.+. .+.++--......    ...+ ..+.     .=.++|+
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~~~i~~----~~~~~~~~~~~~~~~~~G~d~  101 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGATDCLNP----RELDKPVQDVITELTAGGVDY  101 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCSEEECG----GGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCCcccCC----ccchhhhhhhHhhhhcCCCcE
Confidence            3458999997 9999999988888885 4788999976432 2333321111000    0011 1111     1268999


Q ss_pred             EEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCC-CEEEEecCCCC
Q 024248          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVN  167 (270)
Q Consensus       118 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-a~viv~sNPv~  167 (270)
                      ||.++|.+               ..   +-..++-..|. +.+++++.|.+
T Consensus       102 vie~~G~~---------------~~---~~~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2         102 SLDCAGTA---------------QT---LKAAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             EEESSCCH---------------HH---HHHHHHTBCTTTCEEEECCCSSS
T ss_pred             EEEecccc---------------hH---HHHHHHHhhcCCeEEEecCCCCC
Confidence            99998754               11   12222223464 78888887654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.10  E-value=0.061  Score=43.98  Aligned_cols=112  Identities=16%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-----hhHHHHhhccccCcceeeee-ccCC---HHHH---hC--
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFL-GQQQ---LEDA---LT--  113 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-----~~~~~dl~~~~~~~~~~~i~-~t~d---~~~a---l~--  113 (270)
                      .|.|+||+|-+|..++..|+++|. ..|+++.++..     .....++....  ..+..+. ..+|   .++.   +.  
T Consensus        11 t~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~~~i~~~   87 (259)
T d2fr1a1          11 TVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGIGDD   87 (259)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhhcccccc
Confidence            699999999999999999999986 36888877531     11222333221  1111110 1112   1111   21  


Q ss_pred             -CCCEEEEcCCCCCCCCC---ch---hhhHHhhHHHHHHHHHHHhHhCCCCEEEEec
Q 024248          114 -GMDIVIIPAGVPRKPGM---TR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (270)
Q Consensus       114 -~ADvVIi~ag~~~~~g~---~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s  163 (270)
                       ..|.||+++|.......   +.   ...+..|+.....+.+.+... +...++++|
T Consensus        88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence             47889999887543221   11   123456777777776666543 445566555

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.05  E-value=0.066  Score=44.46  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           45 PGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        45 ~~mKI~IIGa~G--~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +.+++.|+||+|  -+|..+|..|++.|.  +|++.+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~~   44 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVP   44 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            345899999866  599999999999999  999998753

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.0095  Score=46.55  Aligned_cols=32  Identities=25%  Similarity=0.239  Sum_probs=29.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      -|+|||| |.-|.+.|..|++.|+  +|.++|.+.
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            3899998 9999999999999999  999999975

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.04  E-value=0.03  Score=45.22  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..+.||+|||| |..|.+.|..|+++|+  +|+++|...
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            44569999998 9999999999999999  999999875

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.02  E-value=0.34  Score=36.15  Aligned_cols=113  Identities=11%  Similarity=0.001  Sum_probs=66.3

Q ss_pred             CCeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~---G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +..|+|+|+|   +..|..++..|...|+  +|+.+..+..     ++.-...         ..++++.-...|+|+++.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~-----~i~G~~~---------~~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYE-----EVLGRKC---------YPSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EETTEEC---------BSSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCccc-----ccCCCcc---------cccccccCccceEEEEEe
Confidence            3489999987   5789999999999999  8988865421     1111111         224433334689998875


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-c-hhhHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T-MLDVVR  198 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t-~ldt~r  198 (270)
                      .                .+.+.++++.+.+..++++++..+.-.+    -+.+.+.+. |+   +++|= | ..+..|
T Consensus        83 p----------------~~~~~~~~~e~~~~g~k~v~~~~G~~~e----e~~~~a~~~-gi---~vig~~C~~v~~~r  136 (139)
T d2d59a1          83 K----------------PKLTMEYVEQAIKKGAKVVWFQYNTYNR----EASKKADEA-GL---IIVANRCMMREHER  136 (139)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCSEEEECTTCCCH----HHHHHHHHT-TC---EEEESCCHHHHHHH
T ss_pred             C----------------HHHHHHHHHHHHHhCCCEEEEeccccCH----HHHHHHHHC-CC---EEEcCCcChhhhhh
Confidence            1                3445666677767676655543332222    344444443 43   56665 6 334443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.96  E-value=0.007  Score=48.55  Aligned_cols=38  Identities=13%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCc-----cEEEEEeCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVNT   83 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~-----~eV~LvD~~~~   83 (270)
                      +|.||+|||+ |.-|.+.|..|+..|+.     -+|+++|....
T Consensus         1 rp~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           1 RPYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            3569999998 99999999999887631     28999998763

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.95  E-value=0.0099  Score=49.69  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +|+|||| |.+|.++|+.|+++|. .+|+|+|++.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            7999998 9999999999999985 2699999864

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.88  E-value=0.016  Score=44.84  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=25.4

Q ss_pred             CCCeEEEEcCCCchHHHH-HHHHHhCCCccEEEE-EeCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPL-AMLMKINPLVSVLHL-YDVVNT   83 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~l-a~~l~~~g~~~eV~L-vD~~~~   83 (270)
                      +++||+|+|+ |.+|..+ ...+...+.+ |+++ .|++.+
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~~   41 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDAA   41 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCTT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecchh
Confidence            4679999995 9999865 4555555555 5555 476643

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.78  E-value=0.03  Score=43.09  Aligned_cols=72  Identities=19%  Similarity=0.236  Sum_probs=47.2

Q ss_pred             CCCeEEEEc-CCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHH----HHhhccccCcceeeeeccCCHHHHhCCCCE
Q 024248           45 PGFKVAVLG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT----ADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (270)
Q Consensus        45 ~~mKI~IIG-a~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~----~dl~~~~~~~~~~~i~~t~d~~~al~~ADv  117 (270)
                      +..||+++| +...|-.+++..+...|.  +++++-...-  ....    .++... ....   +..++|+++++++||+
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~-~~~~---i~~~~d~~~ai~~aDv   75 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKE-TDGS---VSFTSNLEEALAGADV   75 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHH-HCCE---EEEESCHHHHHTTCSE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhh-cCCc---eEEEecHHHhhhhhhh
Confidence            356999999 335788888888888898  9998866421  1111    111111 1112   3446789999999999


Q ss_pred             EEEcC
Q 024248          118 VIIPA  122 (270)
Q Consensus       118 VIi~a  122 (270)
                      |....
T Consensus        76 iyt~~   80 (161)
T d1vlva2          76 VYTDV   80 (161)
T ss_dssp             EEECC
T ss_pred             eeccc
Confidence            98864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.77  E-value=0.012  Score=48.56  Aligned_cols=31  Identities=26%  Similarity=0.388  Sum_probs=29.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |+|||| |.+|.++|+.|+++|+  +|+++|...
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            899998 9999999999999999  999999863

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.027  Score=41.00  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ...||+|+|+ |..|.-++......|+  ++.++|.++.
T Consensus        10 ~~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESSTT
T ss_pred             CCCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCCC
Confidence            3459999998 9999999999999999  9999998763

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.70  E-value=0.016  Score=43.28  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEE
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLH   76 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~   76 (270)
                      |||+|.|++|.+|+.++..+...++  +++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~--~l~   28 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH--ELV   28 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC--eEE
Confidence            8999999999999999988888887  554

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.63  E-value=0.14  Score=41.63  Aligned_cols=99  Identities=23%  Similarity=0.243  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC----h------hHHHHhhccccCcceeeeeccCCHHHHhCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----P------GVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~----~------~~~~dl~~~~~~~~~~~i~~t~d~~~al~~  114 (270)
                      +..||++.|| |..|..++..+...+. ++++++|++-.    .      ....++.+.. ...    ....++.+++++
T Consensus        25 ~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~-~~~----~~~~~l~~~l~g   97 (222)
T d1vl6a1          25 EEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARIT-NPE----RLSGDLETALEG   97 (222)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTS-CTT----CCCSCHHHHHTT
T ss_pred             hhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhh-cch----hhhcchHhhccC
Confidence            3459999998 9999999998887765 69999999731    0      0111222211 110    113467889999


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCC
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~  168 (270)
                      +|+++-+..    ++.-+.              +.+++.++..+|+-.|||..-
T Consensus        98 ~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~  133 (222)
T d1vl6a1          98 ADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPE  133 (222)
T ss_dssp             CSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCS
T ss_pred             cceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccc
Confidence            998766542    121111              235566788888889999764

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.59  E-value=0.091  Score=42.39  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=28.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCc-cEEEEEeCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLV-SVLHLYDVV   81 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~-~eV~LvD~~   81 (270)
                      +.||.|||. |--|..++..+...++- -+.+.+|.+
T Consensus        15 ~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD   50 (209)
T d2vapa1          15 KAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTD   50 (209)
T ss_dssp             CCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESB
T ss_pred             CCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCC
Confidence            459999998 99999999988877652 277788876

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.088  Score=40.75  Aligned_cols=36  Identities=17%  Similarity=0.137  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .-+|+|+|+ |.||...+..+...|. ..|+.+|+++.
T Consensus        29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~   64 (182)
T d1vj0a2          29 GKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPN   64 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHH
T ss_pred             CCEEEEECC-Cccchhheeccccccc-ccccccccccc
Confidence            358999997 9999999988888885 47999999764

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.56  E-value=0.033  Score=43.95  Aligned_cols=76  Identities=20%  Similarity=0.167  Sum_probs=44.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhcccc----Ccce-----eeeeccCCHHHHhCCCCEE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----NAVV-----RGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~----~~~~-----~~i~~t~d~~~al~~ADvV  118 (270)
                      ||+|.|- |.+|..++..+.+++-.+-|.+.|.........-+.+.+.    ....     ..+....++.+...++|+|
T Consensus         3 KVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            8999997 9999999999988765533444455433111110111100    0000     0012234566778899999


Q ss_pred             EEcCCC
Q 024248          119 IIPAGV  124 (270)
Q Consensus       119 Ii~ag~  124 (270)
                      |.|.|.
T Consensus        82 iecTG~   87 (178)
T d1b7go1          82 VDTTPN   87 (178)
T ss_dssp             EECCST
T ss_pred             EECCCC
Confidence            999764

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.55  E-value=0.032  Score=47.95  Aligned_cols=71  Identities=10%  Similarity=0.107  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCCChh--HHHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~~~~--~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      ..+..++|||+ |..+...+..+.. .+ .++|.+++++++..  .+.++.+.  ....     ..+.++++++||+|+.
T Consensus       123 ~~~~~l~iiGa-G~QA~~~~~al~~~~~-i~~i~v~~r~~e~~~~~~~~~~~~--~~~~-----~~~~~~a~~~aDiV~t  193 (320)
T d1omoa_         123 KNSSVFGFIGC-GTQAYFQLEALRRVFD-IGEVKAYDVREKAAKKFVSYCEDR--GISA-----SVQPAEEASRCDVLVT  193 (320)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHHHT--TCCE-----EECCHHHHTSSSEEEE
T ss_pred             CCccEEEEecC-cccHHHHHHHHHHHhh-hhhcccccCCHHHHHHHHHHHHhc--CCcc-----ccchhhhhccccEEEE
Confidence            34458999997 9999987766654 44 67999999876422  22333322  1111     1234688999999988


Q ss_pred             cCC
Q 024248          121 PAG  123 (270)
Q Consensus       121 ~ag  123 (270)
                      +..
T Consensus       194 aT~  196 (320)
T d1omoa_         194 TTP  196 (320)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.014  Score=49.32  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      +|+|||| |..|.++|..|++.|.  +|.++|.+..
T Consensus         3 dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRNH   35 (298)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSSS
T ss_pred             cEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCCC
Confidence            6999998 9999999999999998  9999998764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.46  E-value=0.016  Score=42.69  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .|.+++|||+ |++|.-+|..+...|.  +|+++.+.+
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            3569999998 9999999999999998  999999865

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=94.43  E-value=0.043  Score=46.96  Aligned_cols=105  Identities=16%  Similarity=0.253  Sum_probs=61.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHH----hCCCc-----cEEEEEeCCCC-hhHHHHhhccccCcceeeeeccCCHHHHhCC--
Q 024248           47 FKVAVLGAAGGIGQPLAMLMK----INPLV-----SVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTG--  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~----~~g~~-----~eV~LvD~~~~-~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~--  114 (270)
                      .||+|.|| |.-|..++.+|.    ..|+.     +.++++|++-. .....|+..... ...+......++.++++.  
T Consensus        26 ~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~-~~a~~~~~~~~l~~~i~~~k  103 (308)
T d1o0sa1          26 EKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHV-QFAKDMPETTSILEVIRAAR  103 (308)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGT-TTCBSSCCCCCHHHHHHHHC
T ss_pred             cEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHH-HHHHhcccCCcHHHHHhccc
Confidence            48999998 999999887654    34542     26999998632 000112221110 000111122355565553  


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      .+++|-+.+.+   |.     +.      +++++.+.+.+++.+|+-.|||..
T Consensus       104 ptvliG~s~~~---g~-----ft------~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1         104 PGALIGASTVR---GA-----FN------EEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             CSEEEECSSCT---TC-----SC------HHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             cccEEeccccc---CC-----CC------HHHHHHHHhhCCCcEEEEccCCCC
Confidence            35666665443   21     11      456677888899999999999965

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.32  E-value=0.046  Score=40.13  Aligned_cols=94  Identities=14%  Similarity=0.047  Sum_probs=56.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeec-cCC---HHH-HhCCCCEEEEcC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LED-ALTGMDIVIIPA  122 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~-t~d---~~~-al~~ADvVIi~a  122 (270)
                      .|.|+|. |.+|..++..|.  +.  +++++|.++.....  +.... ..   .+.+ .++   +++ .+..|+.+|++.
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~--~i~vi~~d~~~~~~--~~~~~-~~---~i~Gd~~~~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GS--EVFVLAEDENVRKK--VLRSG-AN---FVHGDPTRVSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GG--GEEEEESCTTHHHH--HHHTT-CE---EEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHc--CC--CCEEEEcchHHHHH--HHhcC-cc---ccccccCCHHHHHHhhhhcCcEEEEec
Confidence            5889998 999999998874  44  67889988653322  22211 01   1111 112   222 367899999975


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEec-CCCC
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVN  167 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~s-NPv~  167 (270)
                      ..         +  ..|+    .++..+++.+|+..++.-+ +|-+
T Consensus        71 ~~---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          71 ES---------D--SETI----HCILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             SS---------H--HHHH----HHHHHHHHHCSSSCEEEECSSGGG
T ss_pred             cc---------h--hhhH----HHHHHHHHHCCCceEEEEEcCHHH
Confidence            21         1  2343    3455677888997665554 5554

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=94.29  E-value=0.029  Score=47.91  Aligned_cols=105  Identities=19%  Similarity=0.269  Sum_probs=61.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh----CCC-----ccEEEEEeCCCC-hhHHHHhhccccCcceeeeeccCCHHHHhC--C
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALT--G  114 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~----~g~-----~~eV~LvD~~~~-~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~  114 (270)
                      .||+|.|| |.-|..++.++..    .|+     .+.++++|++-. .....|+.+... ..........++++.++  .
T Consensus        26 ~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~-~~a~~~~~~~~l~~~i~~vk  103 (298)
T d1gq2a1          26 HTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKE-HFAHEHCEMKNLEDIVKDIK  103 (298)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGG-GGCBSCCCCCCHHHHHHHHC
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHH-HHHHHhhhhhhhHHHhhccC
Confidence            48999998 9999998876642    343     237999999642 000112221100 00000011234555554  3


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      .+++|-+.+.+   |.     +      .+++++.+.+.+++.+|+-.|||..
T Consensus       104 ptvliG~s~~~---g~-----f------t~evv~~ma~~~~~PIIFaLSNPt~  142 (298)
T d1gq2a1         104 PTVLIGVAAIG---GA-----F------TQQILQDMAAFNKRPIIFALSNPTS  142 (298)
T ss_dssp             CSEEEECSCCT---TC-----S------CHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hheeEeccccc---Cc-----C------CHHHHHHHHhhCCCCEEEEccCCCC
Confidence            66777766544   21     1      1456677778899999999999964

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.26  E-value=0.031  Score=43.60  Aligned_cols=78  Identities=15%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      .+..+|+|+|+ |-++.++++.|...+   +|+++.++.++++  +.++...........+. ..+++..+.++|+||.+
T Consensus        16 ~~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dliIn~   90 (177)
T d1nvta1          16 VKDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK-FSGLDVDLDGVDIIINA   90 (177)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEE-EECTTCCCTTCCEEEEC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhh-hhhhhhccchhhhhccC
Confidence            45668999998 989888888886543   9999998754332  22333211111000011 12455567899999998


Q ss_pred             CCCCC
Q 024248          122 AGVPR  126 (270)
Q Consensus       122 ag~~~  126 (270)
                      ...+.
T Consensus        91 tp~g~   95 (177)
T d1nvta1          91 TPIGM   95 (177)
T ss_dssp             SCTTC
T ss_pred             Ccccc
Confidence            65543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.23  E-value=0.042  Score=44.47  Aligned_cols=73  Identities=11%  Similarity=0.023  Sum_probs=41.6

Q ss_pred             CCCeEEEEcCCCchHH-HHHHHHHhCCCccEEE-EEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEE
Q 024248           45 PGFKVAVLGAAGGIGQ-PLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs-~la~~l~~~g~~~eV~-LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi  120 (270)
                      ++.||+|||+ |.+|. ++...+...+.+ +|+ ++|++++...  .+.......... +...+|+++.+.  +.|+|++
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~--~~~~~~~i~~~~-~~~~~d~~ell~~~~iD~V~I  106 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAK--IVAAEYGVDPRK-IYDYSNFDKIAKDPKIDAVYI  106 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHH--HHHHHTTCCGGG-EECSSSGGGGGGCTTCCEEEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHH--HHHHhhcccccc-ccccCchhhhcccccceeeee
Confidence            4569999997 99997 455555544444 555 8898754322  111110001000 122357777665  6899999


Q ss_pred             cC
Q 024248          121 PA  122 (270)
Q Consensus       121 ~a  122 (270)
                      +.
T Consensus       107 ~t  108 (221)
T d1h6da1         107 IL  108 (221)
T ss_dssp             CS
T ss_pred             cc
Confidence            75

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.019  Score=47.21  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .||+|+|+ |-+|+.++..|+..|. ++++|+|-+.
T Consensus        31 ~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            38999998 9999999999999997 6999999874

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.11  E-value=0.061  Score=42.38  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=47.1

Q ss_pred             CCCeEEEEcC-CCchHHHHHHHHHhCCCccEEEEEeCCCC---hhHH---HHhhccccCcceeeeeccCCHHHHhCCCCE
Q 024248           45 PGFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (270)
Q Consensus        45 ~~mKI~IIGa-~G~VGs~la~~l~~~g~~~eV~LvD~~~~---~~~~---~dl~~~~~~~~~~~i~~t~d~~~al~~ADv  117 (270)
                      +..||+++|= ...|..+++..+...|.  +|+++-...-   ....   .++... ....   +..++|++++++++|+
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEE-SGAK---LTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHH-HTCE---EEEESCHHHHTTTCSE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhc-cCCe---EEEEeChhhccccccE
Confidence            3469999993 23788888888888898  9999976431   1111   111111 1112   2346789999999999


Q ss_pred             EEEcC
Q 024248          118 VIIPA  122 (270)
Q Consensus       118 VIi~a  122 (270)
                      |....
T Consensus        78 Vyt~~   82 (185)
T d1dxha2          78 VHTDV   82 (185)
T ss_dssp             EEECC
T ss_pred             EEeeh
Confidence            88764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.09  E-value=0.032  Score=41.24  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+.+++|+|+ |++|.-+|..+...|.  +|++++..+
T Consensus        25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            3569999998 9999999999999998  999998865

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.08  E-value=0.042  Score=41.80  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      +..+|+|.|+ |.+|...+..+...|.  +|+.+|.++.
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~   62 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDE   62 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHH
Confidence            3458999997 9999998888888887  8999998653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.06  E-value=0.023  Score=45.47  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=28.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~   82 (270)
                      ||+|||| |..|.+.|..|...  ++  +|++||...
T Consensus         3 kv~iIGa-GpaGl~aA~~L~~~~~~~--~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGS-GPAGFYTAQHLLKHHSRA--HVDIYEKQL   36 (230)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSSC--EEEEECSSS
T ss_pred             eEEEECc-cHHHHHHHHHHHhcCCCC--eEEEEeCCC
Confidence            9999998 99999999888664  56  999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.05  E-value=0.054  Score=41.85  Aligned_cols=73  Identities=21%  Similarity=0.362  Sum_probs=44.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcceeeeeccCCHHHHh---C--CCCEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDAL---T--GMDIV  118 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~~~i~~t~d~~~al---~--~ADvV  118 (270)
                      +..+|+|+|+ |.+|...+..+...|. ..|+..|.++.+ ..+.++--..   .+.  ....|+.+.+   .  +.|+|
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga~~---~i~--~~~~~~~~~i~~~t~gg~D~v  100 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGATH---VIN--SKTQDPVAAIKEITDGGVNFA  100 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTCSE---EEE--TTTSCHHHHHHHHTTSCEEEE
T ss_pred             CCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCCeE---EEe--CCCcCHHHHHHHHcCCCCcEE
Confidence            3458999998 9999999988887776 367777876532 2233332110   010  1123444433   2  48999


Q ss_pred             EEcCCC
Q 024248          119 IIPAGV  124 (270)
Q Consensus       119 Ii~ag~  124 (270)
                      |.++|.
T Consensus       101 id~~G~  106 (174)
T d1f8fa2         101 LESTGS  106 (174)
T ss_dssp             EECSCC
T ss_pred             EEcCCc
Confidence            999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.01  E-value=0.11  Score=40.20  Aligned_cols=36  Identities=25%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ..+|+|+|+ |-+|...+..+...|. .+|+.+|+++.
T Consensus        28 G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~~   63 (174)
T d1p0fa2          28 GSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHKD   63 (174)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGG
T ss_pred             CCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChHH
Confidence            458999997 9999999988887775 48999999764

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.94  E-value=0.028  Score=45.27  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .+.|+||++-+|..+|..|++.|.  +|++.|++++
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~~   36 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGY--RVVVLDLRRE   36 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcc
Confidence            678899999999999999999999  9999999864

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=93.93  E-value=0.083  Score=43.82  Aligned_cols=115  Identities=23%  Similarity=0.210  Sum_probs=69.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag~  124 (270)
                      ...||+|||-     ..+...+..++.  ++..+|+++..+   |+.             ....++.+..||+||+|+. 
T Consensus       121 ~g~kV~vIG~-----~P~v~~l~~~~~--~~~VlE~~p~~g---d~p-------------~~~~~~lLp~aD~viiTGs-  176 (251)
T d2h1qa1         121 KGKKVGVVGH-----FPHLESLLEPIC--DLSILEWSPEEG---DYP-------------LPASEFILPECDYVYITCA-  176 (251)
T ss_dssp             TTSEEEEESC-----CTTHHHHHTTTS--EEEEEESSCCTT---CEE-------------GGGHHHHGGGCSEEEEETH-
T ss_pred             CCCEEEEEec-----chhHHHHHhcCC--cEEEEeCCCCCC---CCC-------------chHHHHhhhcCCEEEEEec-
Confidence            3469999986     256666777776  999999976422   211             1234577899999999951 


Q ss_pred             CCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeeechhhHHHHHHHHH
Q 024248          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (270)
Q Consensus       125 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~t~ldt~r~~~~lA  204 (270)
                                      -++..-++.+-+.++++..+++..|...+.+   +++ + .|.  +.+=|+...|..++.+.++
T Consensus       177 ----------------TlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P---~lf-~-~Gv--~~lag~~v~d~~~~~~~i~  233 (251)
T d2h1qa1         177 ----------------SVVDKTLPRLLELSRNARRITLVGPGTPLAP---VLF-E-HGL--QELSGFMVKDNARAFRIVA  233 (251)
T ss_dssp             ----------------HHHHTCHHHHHHHTTTSSEEEEESTTCCCCG---GGG-G-TTC--SEEEEEEESCHHHHHHHHT
T ss_pred             ----------------hhhcCCHHHHHHhCCcCCEEEEECCCcccCH---HHH-h-cCC--ceEeEEEEeCHHHHHHHHH
Confidence                            2223334445556767654555557665433   222 2 232  3333445678888888776


Q ss_pred             HH
Q 024248          205 EV  206 (270)
Q Consensus       205 ~~  206 (270)
                      +-
T Consensus       234 ~G  235 (251)
T d2h1qa1         234 GA  235 (251)
T ss_dssp             TS
T ss_pred             cC
Confidence            43

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.2  Score=38.33  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..+|.|+||+|.||...+..+...|.  +|+..+.++
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~   63 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGL--KILGTAGTE   63 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCEEEEEeccccccccccccccccCc--ccccccccc
Confidence            45899999889999999988888898  888887654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.90  E-value=0.073  Score=40.77  Aligned_cols=74  Identities=19%  Similarity=0.283  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh-hHHHHhhccccCcceeeeeccCCHHH-HhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLED-ALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~-~~~~dl~~~~~~~~~~~i~~t~d~~~-al~~ADvVIi~a  122 (270)
                      +..+|+|+|+ |.+|...+..+...|.  +|+.+|.++.+ ..+.++- ++  ..+. .....++.+ .....|+|+.++
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lG-a~--~~i~-~~~~~~~~~~~~~~~d~vi~~~   99 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMG-AD--HYIA-TLEEGDWGEKYFDTFDLIVVCA   99 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHT-CS--EEEE-GGGTSCHHHHSCSCEEEEEECC
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccC-Cc--EEee-ccchHHHHHhhhcccceEEEEe
Confidence            3458999997 9999998888888887  89999997653 2233332 11  1110 011123333 345789999987


Q ss_pred             CCC
Q 024248          123 GVP  125 (270)
Q Consensus       123 g~~  125 (270)
                      +..
T Consensus       100 ~~~  102 (168)
T d1piwa2         100 SSL  102 (168)
T ss_dssp             SCS
T ss_pred             cCC
Confidence            654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.027  Score=38.49  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      +|+|+|+ |..|.-++......|+  +++.+|.+..
T Consensus         3 ~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTSC
T ss_pred             EEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCCC
Confidence            7999998 9999999999999999  9999998753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.87  E-value=0.055  Score=41.80  Aligned_cols=70  Identities=21%  Similarity=0.263  Sum_probs=44.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCH---HHHhCCCCEEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQL---EDALTGMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~---~~al~~ADvVIi  120 (270)
                      +..+|+|.||+|-+|...+..+...|.  +|+..+.++.+. .+.++.   ... +  +. ..+.   ...-+++|+||-
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~lG---a~~-~--i~-~~~~~~~~~~~~g~D~v~d   97 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLALG---AEE-A--AT-YAEVPERAKAWGGLDLVLE   97 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHTT---CSE-E--EE-GGGHHHHHHHTTSEEEEEE
T ss_pred             CCCEEEEEeccccchhhhhhhhccccc--ccccccccccccccccccc---cce-e--ee-hhhhhhhhhcccccccccc
Confidence            345899999889999999998888998  888888765322 222221   100 0  11 1121   123478999998


Q ss_pred             cCC
Q 024248          121 PAG  123 (270)
Q Consensus       121 ~ag  123 (270)
                      +.|
T Consensus        98 ~~G  100 (171)
T d1iz0a2          98 VRG  100 (171)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            764

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.75  E-value=0.0084  Score=46.64  Aligned_cols=68  Identities=29%  Similarity=0.305  Sum_probs=39.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--CCCEEEE
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVII  120 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~ADvVIi  120 (270)
                      ++.++||+|||+ |.+|...+..+...+-...+.++|......    ...   ....   . ..++++.+.  +.|+|++
T Consensus         4 ~~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~----~~~---~~~~---~-~~~~~e~l~~~~iD~V~I   71 (172)
T d1lc0a1           4 NSGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRE----LGS---LDEV---R-QISLEDALRSQEIDVAYI   71 (172)
T ss_dssp             CCCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSC----CCE---ETTE---E-BCCHHHHHHCSSEEEEEE
T ss_pred             CCCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccchHH----HHH---hhcc---C-cCCHHHHHhCCCcchhhh
Confidence            356789999997 999998887765433223455555433211    000   0111   1 225667664  6788988


Q ss_pred             cC
Q 024248          121 PA  122 (270)
Q Consensus       121 ~a  122 (270)
                      +.
T Consensus        72 ~t   73 (172)
T d1lc0a1          72 CS   73 (172)
T ss_dssp             CS
T ss_pred             cc
Confidence            75

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.75  E-value=0.053  Score=42.14  Aligned_cols=72  Identities=17%  Similarity=0.181  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH--HHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~--~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +..+|.|+|+ |-.+.++++.|.+.+  .+|+++.++..+++  +..+...   ..+....   ..+..+.++|+||.|.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~---~~~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAVS---MDSIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEEE---GGGCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhc---cccchhh---hccccccccceeeecc
Confidence            4458999998 989999999888755  49999999754332  2233221   1111111   1123467999999997


Q ss_pred             CCC
Q 024248          123 GVP  125 (270)
Q Consensus       123 g~~  125 (270)
                      ...
T Consensus        88 p~g   90 (171)
T d1p77a1          88 SAG   90 (171)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.027  Score=46.71  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=28.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |+|||| |..|.+.|..|++.|+  +|+++|...
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            789998 9999999999999999  999999765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.66  E-value=0.33  Score=37.40  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      -.|+|+|+ |-+|...+..+...|. .+|+.+|.+++
T Consensus        31 ~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~   65 (176)
T d1d1ta2          31 STCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKD   65 (176)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGG
T ss_pred             CEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHH
Confidence            46999997 9999999988888885 48999999865

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.64  E-value=0.079  Score=42.47  Aligned_cols=35  Identities=31%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +..+|+|-|. |.||+.++..|.+.|.  .|+..|.+.
T Consensus        26 ~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            4468999997 9999999999999998  999999874

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.54  E-value=0.03  Score=45.06  Aligned_cols=33  Identities=27%  Similarity=0.215  Sum_probs=30.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      -|+|||| |..|...|..|++.|+  +|+++|.+..
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGNK   36 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCCC
Confidence            3899998 9999999999999999  9999998753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.52  E-value=0.24  Score=38.93  Aligned_cols=109  Identities=14%  Similarity=0.135  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHh------CCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al------~~ADvV  118 (270)
                      ...|+|+|+ |.+|...+..++..|. ..|+.+|.++.+- .+.++-- +   .+ ......++.+.+      .++|++
T Consensus        26 G~tVlV~Ga-G~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~Ga-~---~~-~~~~~~~~~~~i~~~t~g~g~D~v   98 (195)
T d1kola2          26 GSTVYVAGA-GPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQGF-E---IA-DLSLDTPLHEQIAALLGEPEVDCA   98 (195)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTC-E---EE-ETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhccc-c---EE-EeCCCcCHHHHHHHHhCCCCcEEE
Confidence            458999997 9999887877776664 4899999875321 1222210 0   00 001122333322      368999


Q ss_pred             EEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecC
Q 024248          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (270)
Q Consensus       119 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sN  164 (270)
                      |.+.|.+........-........+...++.+   .|.+.+++++-
T Consensus        99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~---r~gG~v~~~G~  141 (195)
T d1kola2          99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVT---RVAGKIGIPGL  141 (195)
T ss_dssp             EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHE---EEEEEEEECSC
T ss_pred             EECccccccCCcccceeecCcHHHHHHHHHHH---hcCCEEEEeee
Confidence            99988543211110000011122233333333   37888887763

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.47  E-value=0.038  Score=41.76  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .||+|||+ |++|..+|..|.. +.  +|++++...
T Consensus         1 ~rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             CeEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            38999998 9999999988864 55  999998753

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.25  E-value=0.12  Score=39.30  Aligned_cols=71  Identities=13%  Similarity=0.056  Sum_probs=43.6

Q ss_pred             CCCeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           45 PGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        45 ~~mKI~IIGa~G~--VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ...||+++|=..+  |..+++..+...|.  +++++-..+......++... ....   +..++|+++++++||+|..+
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~~~-~~~~---~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEILDE-LNYP---VKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHHTT-CCSC---EEEESCGGGTGGGCSEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhccc-CCCe---EEEEeCHHHHhhcCCeEEEe
Confidence            3569999997333  88999988888887  66555443211000111111 1122   23356888999999998776

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.11  Score=40.66  Aligned_cols=71  Identities=10%  Similarity=0.179  Sum_probs=45.7

Q ss_pred             CCeEEEEcC-CCchHHHHHHHHHhCCCccEEEEEeCCCC--hhH----HHHhhccccCcceeeeeccCCHHHHhCCCCEE
Q 024248           46 GFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV----TADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa-~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~----~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvV  118 (270)
                      ..||+++|= ...|..+++..+...|.  +|+++-....  ...    +.+.... ....   +..+.|.+++++++|+|
T Consensus         5 ~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~---~~~~~d~~~a~~~aDvv   78 (183)
T d1duvg2           5 EMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGN---ITLTEDVAKGVEGADFI   78 (183)
T ss_dssp             GCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCE---EEEESCHHHHHTTCSEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCc---eEEEechhhccccCCEE
Confidence            469999994 12577888888877788  9999976431  111    1111111 1112   23467899999999999


Q ss_pred             EEcC
Q 024248          119 IIPA  122 (270)
Q Consensus       119 Ii~a  122 (270)
                      ....
T Consensus        79 yt~~   82 (183)
T d1duvg2          79 YTDV   82 (183)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8864

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.99  E-value=0.1  Score=40.96  Aligned_cols=66  Identities=21%  Similarity=0.292  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC-hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~-~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .+..||+|||= |.-|.+-|+.|.+.|+  +|++ -..+. ....  ....+-+   .    ..+++||++.||+|.++.
T Consensus        14 ik~k~IaViGY-GsQG~AhAlNLrDSG~--~V~V-GLr~gs~s~~--~A~~~Gf---~----v~~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          14 IQGKKVAIIGY-GSQGHAHACNLKDSGV--DVTV-GLRSGSATVA--KAEAHGL---K----VADVKTAVAAADVVMILT   80 (182)
T ss_dssp             HHTSCEEEECC-SHHHHHHHHHHHHTTC--CEEE-ECCTTCHHHH--HHHHTTC---E----EECHHHHHHTCSEEEECS
T ss_pred             HCCCEEEEEee-CcHhHHHHhhhhhcCC--CEEE-EcCCCCccHH--HHhhhcc---c----cccHHHHhhhcCeeeeec
Confidence            34569999997 9999999999999999  6654 33332 1111  1111111   1    125789999999999985

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.82  E-value=0.077  Score=40.48  Aligned_cols=63  Identities=11%  Similarity=0.146  Sum_probs=43.7

Q ss_pred             CCeEEEEcC--CCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa--~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      .+||+++|=  .+.|..+++..+...|.  +++++.....       ...  ...+   ..+.+++++++++|+|..+-
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~--~~~~---~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDE--ENTF---GTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hcc--ccce---eEEEechhccccCceeeeeE
Confidence            579999997  45699999999988888  8887765321       100  0111   22347789999999988763

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.74  E-value=0.099  Score=41.83  Aligned_cols=105  Identities=21%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCcc-EEEEEeCCCChhHHHHhhcccc----------------Ccceee---eeccCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVS-VLHLYDVVNTPGVTADISHMDT----------------NAVVRG---FLGQQQ  107 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~-eV~LvD~~~~~~~~~dl~~~~~----------------~~~~~~---i~~t~d  107 (270)
                      +|-|||- |--|..++..+...++.+ +++.+|.|..   .+.....+.                .+.+-.   ......
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~~---~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~~~   78 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDAQ---ALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDE   78 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCHH---HHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTHHH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchHH---HHhcCCcchhhccccccccCCCcCcChhhhHhhHHHHHHH
Confidence            6788997 889999999998887632 7777776531   111111000                000000   001123


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCC
Q 024248          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (270)
Q Consensus       108 ~~~al~~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~  167 (270)
                      +.++++++|+||++||....   +.    ..-.+++.++++...    --.+-++|-|-.
T Consensus        79 I~~~l~~~d~vfi~AGlGGg---TG----tGaaPviA~iake~g----~l~v~ivt~PF~  127 (198)
T d1rq2a1          79 IEELLRGADMVFVTAGEGGG---TG----TGGAPVVASIARKLG----ALTVGVVTRPFS  127 (198)
T ss_dssp             HHHHHTTCSEEEEEEETTSS---HH----HHHHHHHHHHHHHHT----CEEEEEEEECCG
T ss_pred             HHHHhcCCCEEEEEEecCCC---CC----cchHHHHHHHHHHcC----CcEEEEEecChH
Confidence            56789999999999987632   22    112455555555542    123455666744

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.60  E-value=1.2  Score=32.81  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=25.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ||+|+|++|.+|..++..+....-..=+..+|...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~   35 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD   35 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            79999999999999988776654333344566643

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.48  E-value=0.055  Score=45.79  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..|+|||| |..|...|..|.+.|+  +++++|...
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            47999998 9999999999999999  999999864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=92.24  E-value=0.054  Score=45.33  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=28.2

Q ss_pred             eEEEEcCCCchHHHHHHHHH-----hCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMK-----INPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~-----~~g~~~eV~LvD~~~   82 (270)
                      -|+|||| |.+|.++|..|+     ..|+  +|+++|+.+
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            4899998 999999999986     4688  999999875

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.15  E-value=0.085  Score=37.92  Aligned_cols=34  Identities=15%  Similarity=0.065  Sum_probs=27.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh---CCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~---~g~~~eV~LvD~~~   82 (270)
                      +.||+|+|+ |++|.-+|..+..   .|.  +|.+++..+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~--~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGG--QVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTC--EEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhccccc--ccceecccc
Confidence            359999998 9999999876543   355  999999865

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.10  E-value=0.5  Score=35.80  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=27.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      -.|+|+|+ |.+|...+..+...|. ..|+..|.++.
T Consensus        34 ~~vli~Ga-G~vG~~~~~~a~~~g~-~~vv~~~~~~~   68 (172)
T d1h2ba2          34 AYVAIVGV-GGLGHIAVQLLKVMTP-ATVIALDVKEE   68 (172)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCC-CEEEEEESSHH
T ss_pred             CEEEEeCC-ChHHHHHHHHHHhhcC-cccccccchhH
Confidence            47999997 9999998887776665 37888888753

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.05  E-value=0.24  Score=37.90  Aligned_cols=72  Identities=17%  Similarity=0.210  Sum_probs=44.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHh------CCCCEEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIVI  119 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al------~~ADvVI  119 (270)
                      ..+|.|+||+|.||...+..+...|.  +++..+.++++   .|+........+-. ....|+.+.+      +++|+||
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~~---~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~~g~d~v~   99 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAK---REMLSRLGVEYVGD-SRSVDFADEILELTDGYGVDVVL   99 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHH---HHHHHTTCCSEEEE-TTCSTHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccccc--cceeeeccccc---cccccccccccccc-CCccCHHHHHHHHhCCCCEEEEE
Confidence            35899999999999999998888887  88887765322   12222110011100 1233554544      5799999


Q ss_pred             EcCC
Q 024248          120 IPAG  123 (270)
Q Consensus       120 i~ag  123 (270)
                      -++|
T Consensus       100 d~~g  103 (183)
T d1pqwa_         100 NSLA  103 (183)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            9875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.90  E-value=0.068  Score=43.41  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=30.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .|+|||| |..|...|..|++.|+  +|+++|..+.
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGKK   38 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCCC
Confidence            5999998 9999999999999998  9999998764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.042  Score=42.67  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      ..+|+|||+ |..|...|..+++.|+  +++++|..
T Consensus         5 ~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~   37 (190)
T d1trba1           5 HSKLLILGS-GPAGYTAAVYAARANL--QPVLITGM   37 (190)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEee
Confidence            348999998 9999999999999999  99999864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.079  Score=41.66  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=29.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      -|+|||| |..|...|..+++.|+  +|++++.+.
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            3899998 9999999999999999  999999864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.066  Score=47.85  Aligned_cols=35  Identities=31%  Similarity=0.528  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..||.|+|+ |-+|+.++..|+..|. ++++++|.+.
T Consensus        37 ~~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            358999998 9999999999999997 5899999874

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.72  E-value=0.071  Score=40.58  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=26.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~   80 (270)
                      .+|+|||+ |++|.-+|..|...+.-..|++++.
T Consensus         4 ~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            48999998 9999999999999887334555544

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.66  E-value=0.049  Score=40.27  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ++.+|+|+|| |..|..++..+....-..-+.++|.++.
T Consensus         2 ~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           2 RKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            3558999998 9999999876654433457788898764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.65  E-value=0.11  Score=37.49  Aligned_cols=36  Identities=17%  Similarity=0.073  Sum_probs=27.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~-~~eV~LvD~~~   82 (270)
                      +.+|+|+|| |++|.-+|..+...+. ..+|++++..+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            458999998 9999999976554322 12899999865

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.54  E-value=0.92  Score=33.12  Aligned_cols=85  Identities=16%  Similarity=0.165  Sum_probs=51.3

Q ss_pred             CCeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~---G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +..|+|+|+|   +..|..+...|...+ ..+|+.+..+...     +.-...+         .++++.=...|+++++.
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~-----i~G~~~y---------~sl~dlp~~vDlvvi~v   72 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEE-----VQGVKAY---------KSVKDIPDEIDLAIIVV   72 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSE-----ETTEECB---------SSTTSCSSCCSEEEECS
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCccc-----cCCeEee---------cchhhcCCCCceEEEec
Confidence            4589999998   788888887776654 4588888654321     1111111         23322224689999875


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEE
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv  161 (270)
                      .                .+.+.++++++.+..-.+.+++
T Consensus        73 p----------------~~~~~~~~~~~~~~g~~~~vi~   95 (129)
T d2csua1          73 P----------------KRFVKDTLIQCGEKGVKGVVII   95 (129)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCCEEEEC
T ss_pred             C----------------hHHhHHHHHHHHHcCCCEEEEe
Confidence            1                2344566677766666655543

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=91.25  E-value=0.96  Score=33.28  Aligned_cols=116  Identities=11%  Similarity=-0.012  Sum_probs=64.2

Q ss_pred             CCeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcC
Q 024248           46 GFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (270)
Q Consensus        46 ~mKI~IIGa~---G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~a  122 (270)
                      +..|+|||||   +..|..+...|...|+  .++++-.+.....   +..         +....++.+.=...|+|+++.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~~---i~g---------~~~~~~l~~i~~~iD~v~v~~   78 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGEE---LFG---------EEAVASLLDLKEPVDILDVFR   78 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTSE---ETT---------EECBSSGGGCCSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccce---eec---------eecccchhhccCCCceEEEec
Confidence            3479999986   4688888889999999  8888866432111   111         111234433224679999975


Q ss_pred             CCCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeeee-c-hhhHHHH
Q 024248          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T-MLDVVRA  199 (270)
Q Consensus       123 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~t~~~~~~sg~p~~kviG~-t-~ldt~r~  199 (270)
                      .                .+.+.++++.+.+...+++++.-+.-.+    -+.+++++. |+   ++++= | ..+..|+
T Consensus        79 p----------------~~~v~~~v~~~~~~g~k~i~~q~G~~~~----e~~~~a~~~-Gi---~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          79 P----------------PSALMDHLPEVLALRPGLVWLQSGIRHP----EFEKALKEA-GI---PVVADRCLMVEHKRL  133 (136)
T ss_dssp             C----------------HHHHTTTHHHHHHHCCSCEEECTTCCCH----HHHHHHHHT-TC---CEEESCCHHHHHHHH
T ss_pred             c----------------HHHHHHHHHHHHhhCCCeEEEecCccCH----HHHHHHHHc-CC---EEEcCCccHHHHHHh
Confidence            2                2233445555556666665543332222    234444443 44   56653 5 4444443

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=91.22  E-value=0.09  Score=43.34  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=28.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHh-CCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~-~g~~~eV~LvD~~~   82 (270)
                      -|+|||| |..|...|..|++ .|+  +|+++|...
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            3999998 9999999999987 499  999999865

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.19  E-value=0.36  Score=38.35  Aligned_cols=78  Identities=21%  Similarity=0.285  Sum_probs=46.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCcc-EEEEEeCCCChh-------H--H-HHhhcc---ccCcceee---eeccCCHHH
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVS-VLHLYDVVNTPG-------V--T-ADISHM---DTNAVVRG---FLGQQQLED  110 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~-eV~LvD~~~~~~-------~--~-~dl~~~---~~~~~~~~---i~~t~d~~~  110 (270)
                      +|.|||- |--|..++..+...++.+ +++.+|.|...-       +  . .++...   ...+.+-.   ......+.+
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~~~I~~   81 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRERISE   81 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTHHHHHH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHHHHHHH
Confidence            6889997 999999999998877532 788888774200       0  0 011110   00110000   001123566


Q ss_pred             HhCCCCEEEEcCCCCC
Q 024248          111 ALTGMDIVIIPAGVPR  126 (270)
Q Consensus       111 al~~ADvVIi~ag~~~  126 (270)
                      .++++|+||++||...
T Consensus        82 ~l~~~d~vfi~AGlGG   97 (198)
T d1ofua1          82 VLEGADMVFITTGMGG   97 (198)
T ss_dssp             HHTTCSEEEEEEETTS
T ss_pred             HhCCCCeEEEEecCCC
Confidence            7899999999998763

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.13  E-value=0.088  Score=43.70  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      -|+|||+ |..|.+.|..|+++|+  +|+|+|...
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            4999998 9999999999999998  999999864

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.12  Score=38.34  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=27.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHH----hCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMK----INPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~----~~g~~~eV~LvD~~~   82 (270)
                      .+|+|+|| |++|.-+|..|.    ..|.  +|++++...
T Consensus        38 k~i~IvGg-G~~G~E~A~~l~~~~~~~g~--~Vt~i~~~~   74 (137)
T d1m6ia2          38 KSITIIGG-GFLGSELACALGRKARALGT--EVIQLFPEK   74 (137)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHHhcCC--EEEEecccc
Confidence            48999998 999999987774    3466  999999865

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.05  E-value=0.086  Score=41.02  Aligned_cols=32  Identities=16%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      .+|+|||| |..|...|..+++.|+  +++++|..
T Consensus         6 ~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEee
Confidence            48999998 9999999999999999  88999854

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=90.84  E-value=0.29  Score=37.86  Aligned_cols=77  Identities=21%  Similarity=0.172  Sum_probs=43.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhh-cccc---Cc-ce-----eeeeccCCHHHHhCCCCE
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-HMDT---NA-VV-----RGFLGQQQLEDALTGMDI  117 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~-~~~~---~~-~~-----~~i~~t~d~~~al~~ADv  117 (270)
                      ||+|-|- |.+|..++..+..++-.+-|.+-|..........+. +.+.   .. ..     ..+....++.+++.++|+
T Consensus         3 ~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           3 AVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             EEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            8999997 999999998887776543333445443321111111 1110   00 00     001112345677889999


Q ss_pred             EEEcCCCC
Q 024248          118 VIIPAGVP  125 (270)
Q Consensus       118 VIi~ag~~  125 (270)
                      ||.|.|..
T Consensus        82 ViEcTG~f   89 (171)
T d1cf2o1          82 VIDCTPEG   89 (171)
T ss_dssp             EEECCSTT
T ss_pred             EEEccCCC
Confidence            99997643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.35  Score=36.78  Aligned_cols=71  Identities=17%  Similarity=0.108  Sum_probs=45.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeeccCCHHHHh------CCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~t~d~~~al------~~ADvV  118 (270)
                      ..+|+|+||+|.+|...+..+...|.  +|+..|.++.+. ...++-   ....+.  ....|+.+.+      ++.|+|
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a~~vi~--~~~~d~~~~v~~~t~g~g~d~v  101 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---AWQVIN--YREEDLVERLKEITGGKKVRVV  101 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---CSEEEE--TTTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---CeEEEE--CCCCCHHHHHHHHhCCCCeEEE
Confidence            35899999988899999998888888  999999875422 222232   111110  1223554443      357888


Q ss_pred             EEcCC
Q 024248          119 IIPAG  123 (270)
Q Consensus       119 Ii~ag  123 (270)
                      +-++|
T Consensus       102 ~d~~g  106 (179)
T d1qora2         102 YDSVG  106 (179)
T ss_dssp             EECSC
T ss_pred             EeCcc
Confidence            88764

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=90.52  E-value=0.49  Score=38.02  Aligned_cols=73  Identities=12%  Similarity=0.202  Sum_probs=39.1

Q ss_pred             CCCCCeEEEEcCCCc----hHHHHHHHHHhC-CCccEEE-EEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhC--C
Q 024248           43 GSPGFKVAVLGAAGG----IGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--G  114 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~----VGs~la~~l~~~-g~~~eV~-LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~--~  114 (270)
                      .++++||+|||+ |.    ++......+... +.+ +|+ ++|++.....  .+......+...   ..+++++.++  +
T Consensus        13 ~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~--~~~~~~~~~~~~---~~~~~~~l~~~~~   85 (237)
T d2nvwa1          13 SSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSL--QTIEQLQLKHAT---GFDSLESFAQYKD   85 (237)
T ss_dssp             GGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHH--HHHHHTTCTTCE---EESCHHHHHHCTT
T ss_pred             CCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHH--HHHHhcccccce---eecchhhcccccc
Confidence            466789999997 76    444444445432 323 655 7888643221  111110011111   1247777664  6


Q ss_pred             CCEEEEcC
Q 024248          115 MDIVIIPA  122 (270)
Q Consensus       115 ADvVIi~a  122 (270)
                      .|+|+++.
T Consensus        86 iD~V~i~t   93 (237)
T d2nvwa1          86 IDMIVVSV   93 (237)
T ss_dssp             CSEEEECS
T ss_pred             cceeeccC
Confidence            78888875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.46  E-value=0.42  Score=36.34  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCCh
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP   84 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~   84 (270)
                      ..+|+|+|+ |-+|...+..++..+. ..|+.+|+++.+
T Consensus        29 GdtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~~k   65 (176)
T d2jhfa2          29 GSTCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINKDK   65 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGG
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcHHH
Confidence            358999998 8899998888887764 399999997653

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.45  E-value=1.8  Score=30.85  Aligned_cols=81  Identities=10%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             CeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEcCC
Q 024248           47 FKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (270)
Q Consensus        47 mKI~IIGa~---G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~ag  123 (270)
                      ++|+|+|+|   +..|..+...|++.|+  +|+.+..+..  .   +.-.         ....++++.=...|+++++..
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~--~---i~G~---------~~y~sl~~lp~~~D~vvi~vp   65 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD--E---IEGL---------KCYRSVRELPKDVDVIVFVVP   65 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--E---ETTE---------ECBSSGGGSCTTCCEEEECSC
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEccccc--c---ccCc---------cccccchhccccceEEEEEeC
Confidence            479999986   5788899999999999  8888865321  1   1111         112244332245699988741


Q ss_pred             CCCCCCCchhhhHHhhHHHHHHHHHHHhHhCCCCEE
Q 024248          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (270)
Q Consensus       124 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  159 (270)
                                      .+.+.++++++.+..+.+++
T Consensus        66 ----------------~~~~~~~l~~~~~~g~k~v~   85 (116)
T d1y81a1          66 ----------------PKVGLQVAKEAVEAGFKKLW   85 (116)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCEEE
T ss_pred             ----------------HHHHHHHHHHHHhcCCceEE
Confidence                            23345566666666666544

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.39  E-value=0.13  Score=40.49  Aligned_cols=33  Identities=15%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      =|+|||+ |..|.+.|..+++.|+  +|+++|....
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRGK   39 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecCC
Confidence            3899998 9999999999999999  9999997653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.26  E-value=0.1  Score=40.86  Aligned_cols=32  Identities=16%  Similarity=0.111  Sum_probs=29.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      =|+|||+ |..|.+.|..+++.|+  +|+++|..+
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            3899998 9999999999999998  999999865

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.25  E-value=0.13  Score=39.12  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      -|+|||| |..|...|..+++.|+  +++++|.+
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGER   33 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEEe
Confidence            4899998 9999999999999999  89999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.86  E-value=0.15  Score=39.04  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=26.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~   80 (270)
                      -||+|||+ |++|..+|..|.+.+.-..|+++..
T Consensus         4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           4 APVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            37999998 9999999999988876435665543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=89.34  E-value=1.9  Score=34.12  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=18.5

Q ss_pred             eEEEEcCCCchHHHH-----HHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPL-----AMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~l-----a~~l~~~g~~~eV~LvD~~~   82 (270)
                      -|+.+|.+| +|-+.     |..+..+|.  .|.++-.|.
T Consensus        14 vi~lvGptG-vGKTTTiAKLA~~~~~~g~--kV~lit~Dt   50 (211)
T d1j8yf2          14 VIMLVGVQG-TGKATTAGKLAYFYKKKGF--KVGLVGADV   50 (211)
T ss_dssp             EEEEECSCC-C----HHHHHHHHHHHTTC--CEEEEECCC
T ss_pred             EEEEECCCC-CCHHHHHHHHHHHHHHCCC--ceEEEEeec
Confidence            366678755 57643     345566676  788887765

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.20  E-value=0.54  Score=35.97  Aligned_cols=36  Identities=22%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      +...|.|.||+|.||...+..++..|.  +|+..+.++
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga--~vi~~~~~~   64 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSD   64 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCC--EEEEeCCCH
Confidence            346899999999999999999999998  998888754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.93  E-value=0.17  Score=44.11  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=29.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHh------CCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKI------NPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~------~g~~~eV~LvD~~~   82 (270)
                      =|+|||| |.-|++.|..|++      +|+  +|+++|+..
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            3999998 9999999999986      799  999999875

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=88.89  E-value=0.17  Score=42.35  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      =|+|||+ |..|.+.|..|+++|+  +|++++...
T Consensus        25 DVvVIG~-G~aGl~aA~~la~~G~--~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGS-GGAGLAAAVSARDAGA--KVILLEKEP   56 (322)
T ss_dssp             SEEEECS-SHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             eEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999998 9999999999999999  999999864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.84  E-value=0.46  Score=35.33  Aligned_cols=33  Identities=15%  Similarity=0.084  Sum_probs=28.5

Q ss_pred             CeEEEE--cCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVL--GAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~II--Ga~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..++|+  |+ |++|..+|..|+..|.  +|+++....
T Consensus        40 ~~vvi~d~gg-g~ig~e~A~~la~~G~--~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADT-YFMAPSLAEKLATAGH--EVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCC-SSHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CceEEEecCC-ChHHHHHHHHHHHcCC--eEEEEecCC
Confidence            355555  87 9999999999999998  999999865

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=88.78  E-value=0.17  Score=42.89  Aligned_cols=30  Identities=13%  Similarity=0.133  Sum_probs=27.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~   80 (270)
                      -|+|||+ |+-|+.+|..|++.|+  .|++++.
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGV--QTLMLEM   33 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcC--eEEEEec
Confidence            3889997 9999999999999999  9999987

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.21  Score=39.55  Aligned_cols=33  Identities=9%  Similarity=0.054  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      .++|||+ |+.|..+|..|.+.+...+|++++..
T Consensus         6 ~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           6 PFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            5899998 99999999999888877799999874

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.69  E-value=0.15  Score=40.10  Aligned_cols=32  Identities=16%  Similarity=0.093  Sum_probs=29.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .|+|||+ |..|...|..+++.|.  +|+++|.+.
T Consensus         7 DlvVIG~-GpaGl~aA~~aa~~G~--~V~liE~~~   38 (220)
T d1lvla1           7 TLLIIGG-GPGGYVAAIRAGQLGI--PTVLVEGQA   38 (220)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            5999998 9999999999999999  999999764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.37  E-value=0.22  Score=39.41  Aligned_cols=32  Identities=28%  Similarity=0.290  Sum_probs=29.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      |+|||+ |..|.+.|..+++.|+  +|+++|..+.
T Consensus         9 viIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~~   40 (229)
T d1ojta1           9 VVVLGG-GPGGYSAAFAAADEGL--KVAIVERYKT   40 (229)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--eEEEEeccCC
Confidence            889998 9999999999999999  9999998653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.26  E-value=0.24  Score=38.70  Aligned_cols=31  Identities=16%  Similarity=0.033  Sum_probs=28.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |+|||+ |..|...|..+++.|.  +|+++|...
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~--kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGA--RAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            789998 9999999999999998  999999864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.19  E-value=0.2  Score=39.66  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=28.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |+|||+ |..|.+.|..+++.|+  +|+++|...
T Consensus         6 viVIG~-GpaGl~aA~~aa~~G~--kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGG-GSGGLAAAKEAAKFDK--KVMVLDFVT   36 (235)
T ss_dssp             EEEECC-SHHHHHHHHHHGGGCC--CEEEECCCC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            789998 9999999999999999  999999643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.02  E-value=1  Score=33.66  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .-+|+|+|++|-+|...+..+...|. .+|+..|.++.
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~   64 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREE   64 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHH
T ss_pred             CCEEEEEeccccceeeeeeccccccc-ccccccccchh
Confidence            34899999779999988887777665 38999998753

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=88.01  E-value=0.63  Score=37.39  Aligned_cols=60  Identities=17%  Similarity=0.150  Sum_probs=37.8

Q ss_pred             CCchHHHHHHHHHhCCCccEEEEEeCCCChhHHHHhhccccCcceeee--eccCCH----HHHhCCCCEEEEcCCCC
Q 024248           55 AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF--LGQQQL----EDALTGMDIVIIPAGVP  125 (270)
Q Consensus        55 ~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~~~dl~~~~~~~~~~~i--~~t~d~----~~al~~ADvVIi~ag~~  125 (270)
                      ||.+|..+|..+..+|.  +|+|+--....       .  ....+..+  ..+.+.    .+.+.++|++|.+|.+.
T Consensus        31 SGk~G~aiA~~~~~~Ga--~V~li~g~~~~-------~--~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAAvs   96 (223)
T d1u7za_          31 SGKMGFAIAAAAARRGA--NVTLVSGPVSL-------P--TPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVA   96 (223)
T ss_dssp             CSHHHHHHHHHHHHTTC--EEEEEECSCCC-------C--CCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred             cHHHHHHHHHHHHHcCC--chhhhhccccc-------C--cccccccceehhhHHHHHHHHhhhccceeEeeeechh
Confidence            79999999999999999  99999653210       0  00011111  111122    23467999999988654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.41  E-value=0.29  Score=38.03  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=29.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      -|+|||+ |..|.+.|..+++.|+  +|++++...
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            3889998 9999999999999998  999999865

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.19  E-value=0.21  Score=38.80  Aligned_cols=32  Identities=28%  Similarity=0.204  Sum_probs=28.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      =|+|||+ |.-|.+.|..+++.|+  +|+++|..+
T Consensus         5 DviIIGg-GpAGl~aA~~aar~G~--~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGA-GPGGYVAAIKSAQLGL--KTALIEKYK   36 (229)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEEECCB
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccc
Confidence            4899998 9999999999999999  999999753

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=87.18  E-value=0.26  Score=41.09  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=28.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |+|||+ |..|.+.|..++++|.  .|++++...
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~--~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGL--STIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTC--CEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--CEEEEecCC
Confidence            899998 9999999999999998  899998754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.11  E-value=0.87  Score=34.19  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=43.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChh-HHHHhhccccCcceeeeec-cCCHHHHh-----CCCCEE
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLG-QQQLEDAL-----TGMDIV  118 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~-~~~dl~~~~~~~~~~~i~~-t~d~~~al-----~~ADvV  118 (270)
                      .-+|+|.|+ |-+|...+..++..|. ..|+..|.++.+. .+.++--...   +. ... .++.++.+     .++|+|
T Consensus        29 G~tVlI~Ga-GGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~~~---i~-~~~~~~~~~~~~~~~~~~g~D~v  102 (176)
T d2fzwa2          29 GSVCAVFGL-GGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGATEC---IN-PQDFSKPIQEVLIEMTDGGVDYS  102 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCSEE---EC-GGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCEEEEecc-hhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCcEE---Ee-CCchhhHHHHHHHHHcCCCCcEe
Confidence            357999998 8899988888877775 3788888865432 2333331110   00 000 11222222     579999


Q ss_pred             EEcCCC
Q 024248          119 IIPAGV  124 (270)
Q Consensus       119 Ii~ag~  124 (270)
                      |.++|.
T Consensus       103 id~~G~  108 (176)
T d2fzwa2         103 FECIGN  108 (176)
T ss_dssp             EECSCC
T ss_pred             eecCCC
Confidence            999763

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=87.10  E-value=0.18  Score=38.39  Aligned_cols=73  Identities=12%  Similarity=0.132  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           45 PGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~G~--VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      ...||+++|=..+  |..+++..+...|. ..+++.-....  .....+..+.. ...   +..+.|+++++++||+|..
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~-~~~~~~~P~~~~~~~~~~~~~~~~-~~~---~~~~~d~~~a~~~aDvvy~   77 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIA---WSLHSSIEEVMAEVDILYM   77 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHHT-TCC---EEECSCSTTTGGGCSEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHcCC-CeEEeeccchhhhhHHHHHHHhhh-ccc---cccccCHHHHhCcCceEEe
Confidence            4569999996333  88888877766653 16666654321  12222333221 112   2335688899999999987


Q ss_pred             cC
Q 024248          121 PA  122 (270)
Q Consensus       121 ~a  122 (270)
                      +-
T Consensus        78 ~~   79 (160)
T d1ekxa2          78 TR   79 (160)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=87.06  E-value=0.28  Score=41.05  Aligned_cols=29  Identities=24%  Similarity=0.426  Sum_probs=27.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~   80 (270)
                      |+|||+ |.-|..+|..|++.|+  +|.+++.
T Consensus         7 viIVGs-G~aG~v~A~~La~~G~--kVlvLEa   35 (379)
T d2f5va1           7 VVIVGS-GPIGCTYARELVGAGY--KVAMFDI   35 (379)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--EEEEECS
T ss_pred             EEEECc-CHHHHHHHHHHhhCCC--eEEEEec
Confidence            899997 9999999999999999  9999985

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.97  E-value=1.2  Score=33.52  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=28.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ..+|+|+|+ |-+|...+..++..+- .+|+.+|.++.
T Consensus        29 g~~VlI~G~-Gg~g~~~~~~~~~~g~-~~Vi~~~~~~~   64 (175)
T d1cdoa2          29 GSTCAVFGL-GAVGLAAVMGCHSAGA-KRIIAVDLNPD   64 (175)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGG
T ss_pred             CCEEEEEec-CCccchHHHHHHHHhh-chheeecchHH
Confidence            358999998 8888888777776554 48999998765

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.77  E-value=1.5  Score=36.74  Aligned_cols=32  Identities=13%  Similarity=0.058  Sum_probs=25.5

Q ss_pred             EEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           49 VAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        49 I~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..|+|++  .-+|..+|..|++.|.  +|++.+...
T Consensus         5 AlITGaa~s~GIG~aiA~~la~~GA--~V~i~~~~~   38 (329)
T d1uh5a_           5 CFIAGIGDTNGYGWGIAKELSKRNV--KIIFGIWPP   38 (329)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHTTC--EEEEEECGG
T ss_pred             EEEeCCCCCChHHHHHHHHHHHcCC--EEEEEeCch
Confidence            3466852  2699999999999999  999988653

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.57  Score=35.67  Aligned_cols=73  Identities=12%  Similarity=0.109  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC--hhHH-HHhhccc--cCcceeeeeccCCHHHHhCCCCEEE
Q 024248           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT-ADISHMD--TNAVVRGFLGQQQLEDALTGMDIVI  119 (270)
Q Consensus        45 ~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~-~dl~~~~--~~~~~~~i~~t~d~~~al~~ADvVI  119 (270)
                      +..||+++|-...|-.+++..+...|.  +++++-....  .... .+.....  ....   +..+.|+++++++||+|.
T Consensus         3 ~gl~I~~vGD~~nV~~Sli~~~~~~g~--~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~---i~~~~d~~~~~~~advi~   77 (170)
T d1otha2           3 KGLTLSWIGDGNNILHSIMMSAAKFGM--HLQAATPKGYEPDASVTKLAEQYAKENGTK---LLLTNDPLEAAHGGNVLI   77 (170)
T ss_dssp             TTCEEEEESCSSHHHHHHHTTTGGGTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCC---EEEESCHHHHHTTCSEEE
T ss_pred             CCCEEEEEcCchhHHHHHHHHHHHcCC--EEEEEeccccCCchHHHHHHHHHHhccCCE---EEEEcCHHHHHhhhhhee
Confidence            456999999733343444444555577  8888876431  1111 1111100  1122   234678999999999999


Q ss_pred             EcC
Q 024248          120 IPA  122 (270)
Q Consensus       120 i~a  122 (270)
                      ...
T Consensus        78 ~~~   80 (170)
T d1otha2          78 TDT   80 (170)
T ss_dssp             ECC
T ss_pred             eec
Confidence            865

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.63  E-value=0.31  Score=39.41  Aligned_cols=31  Identities=19%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        49 I~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ++|||+ |..|...|..+++.|+  +|.++|.+.
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~--~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNA--KVALVEKSR   34 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            789998 9999999999999999  999999864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=86.58  E-value=4.2  Score=31.88  Aligned_cols=33  Identities=15%  Similarity=0.108  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCchHHHHH-----HHHHhCCCccEEEEEeCCC
Q 024248           47 FKVAVLGAAGGIGQPLA-----MLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la-----~~l~~~g~~~eV~LvD~~~   82 (270)
                      .-|+++|.+| +|-+..     ..+..+|.  .|.++-.+.
T Consensus         7 ~vi~lvGptG-vGKTTTiaKLA~~~~~~g~--kV~lit~Dt   44 (207)
T d1okkd2           7 RVVLVVGVNG-VGKTTTIAKLGRYYQNLGK--KVMFCAGDT   44 (207)
T ss_dssp             SEEEEECSTT-SSHHHHHHHHHHHHHTTTC--CEEEECCCC
T ss_pred             EEEEEECCCC-CCHHHHHHHHHHHHHHCCC--cEEEEEecc
Confidence            3467888855 576532     44455665  788887765

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.47  E-value=2.6  Score=34.92  Aligned_cols=37  Identities=14%  Similarity=0.201  Sum_probs=26.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .++.||.|+|+ |  +..++..++...-..+|.++|+++.
T Consensus        79 ~~pk~VLiiGg-G--~G~~~r~~l~~~~~~~i~~VEiD~~  115 (290)
T d1xj5a_          79 PNPKKVLVIGG-G--DGGVLREVARHASIEQIDMCEIDKM  115 (290)
T ss_dssp             SCCCEEEEETC-S--SSHHHHHHTTCTTCCEEEEEESCHH
T ss_pred             CCCcceEEecC-C--chHHHHHHHhcccceeeEEecCCHH
Confidence            45669999998 6  3445556665544568999999864

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=86.30  E-value=0.85  Score=36.89  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      -+.++|+|-|- |.||+.++..|.+.|.  .|+..|.+.
T Consensus        37 l~g~~v~IqG~-GnVG~~~a~~L~~~Ga--kvv~~d~~~   72 (230)
T d1leha1          37 LEGLAVSVQGL-GNVAKALCKKLNTEGA--KLVVTDVNK   72 (230)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEeecccH
Confidence            34568999997 9999999999999998  999999874

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.23  E-value=0.44  Score=31.88  Aligned_cols=38  Identities=18%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .+..+|.|.||+|-||+.....++..|.  +|+..-.+++
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~--~Vi~~t~s~~   67 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGY--QVVAVSGRES   67 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCGG
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCC--eEEEEECCHH
Confidence            3456899999999999999998888898  8888776543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.15  E-value=0.24  Score=41.37  Aligned_cols=32  Identities=28%  Similarity=0.298  Sum_probs=29.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      -|+|||+ |..|.+.|..+++.|.  +|++++...
T Consensus        21 DVvVIGa-G~aGl~AA~~aa~~G~--~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGA-GSAGFNASLAAKKAGA--NVILVDKAP   52 (317)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            5999998 9999999999999998  999999864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.52  E-value=1.4  Score=37.22  Aligned_cols=107  Identities=12%  Similarity=0.085  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-HHHh----hccccCcceeeeeccCCHHHHh----C
Q 024248           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADI----SHMDTNAVVRGFLGQQQLEDAL----T  113 (270)
Q Consensus        43 ~~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~~dl----~~~~~~~~~~~i~~t~d~~~al----~  113 (270)
                      +..+.||.|+|+ |  +..++..++...-..+|.++|+++..-. +...    ......++++.+  ..|-.+.+    +
T Consensus       104 ~~~pk~VLIiGg-G--~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~--i~Da~~~l~~~~~  178 (312)
T d2b2ca1         104 HPDPKRVLIIGG-G--DGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF--CGDGFEFLKNHKN  178 (312)
T ss_dssp             SSSCCEEEEESC-T--TSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEE--CSCHHHHHHHCTT
T ss_pred             CCCCCeEEEeCC-C--chHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEE--EchHHHHHHhCCC
Confidence            344669999998 6  2344555655544569999999864111 1111    111113455432  23433333    3


Q ss_pred             CCCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhH-hCCCCEEEEec
Q 024248          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLIS  163 (270)
Q Consensus       114 ~ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~viv~s  163 (270)
                      .-|+||+-.-.+.  +.. .      .-..+++.+.+++ ..|+++++.-+
T Consensus       179 ~yDvII~D~~dp~--~~~-~------~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         179 EFDVIITDSSDPV--GPA-E------SLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             CEEEEEECCC----------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CCCEEEEcCCCCC--Ccc-h------hhhhHHHHHHHHhhcCCCcEEEEec
Confidence            4699998643221  111 1      1223555555654 34888775544

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=85.18  E-value=0.34  Score=41.04  Aligned_cols=30  Identities=17%  Similarity=0.254  Sum_probs=27.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~   80 (270)
                      =+.|||+ |+-|..+|..|++.|+  +|++++.
T Consensus         9 dvIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   38 (370)
T d3coxa1           9 PALVIGS-GYGGAVAALRLTQAGI--PTQIVEM   38 (370)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeC
Confidence            3789997 9999999999999999  9999986

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=84.45  E-value=2.2  Score=34.21  Aligned_cols=68  Identities=13%  Similarity=0.083  Sum_probs=39.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCc---c-EE-EEEeCCCC-hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEEc
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLV---S-VL-HLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~---~-eV-~LvD~~~~-~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi~  121 (270)
                      ||+|||= |.-|.+-|+.|.+.|+-   + .| +.+..... ..++.  .+........    .-+.+||++.||+|.++
T Consensus        46 kIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~--~dGf~v~~~~----v~~v~EAv~~ADiVmiL  118 (226)
T d1qmga2          46 QIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR--AAGFSEENGT----LGDMWETISGSDLVLLL  118 (226)
T ss_dssp             EEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH--HTTCCGGGTC----EEEHHHHHHTCSEEEEC
T ss_pred             EEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH--HcCCccCCCc----ccCHHHHHhhCCEEEEe
Confidence            7999997 99999999999996530   0 23 22322211 11221  1110000100    11467899999999998


Q ss_pred             C
Q 024248          122 A  122 (270)
Q Consensus       122 a  122 (270)
                      .
T Consensus       119 l  119 (226)
T d1qmga2         119 I  119 (226)
T ss_dssp             S
T ss_pred             c
Confidence            6

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.05  E-value=0.32  Score=40.52  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEeCCCC
Q 024248           47 FKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNT   83 (270)
Q Consensus        47 mKI~IIGa~G~VGs~la~~l~~~--g~~~eV~LvD~~~~   83 (270)
                      .+|+|||+ |..|.+.|+.|+++  |+  +|+++|....
T Consensus        51 ~~~~~~g~-g~~g~~~a~~~~~~~~~~--~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGA-GSSGLSAAYVIAKNRPDL--KVCIIESSVA   86 (311)
T ss_dssp             ESEEEECC-SHHHHHHHHHHHHHCTTS--CEEEECSSSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhCCCC--eEEEEEcCCC
Confidence            36999998 99999999999864  77  9999998753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.58  E-value=0.83  Score=34.32  Aligned_cols=34  Identities=24%  Similarity=-0.014  Sum_probs=27.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~   81 (270)
                      +.||+|||+ |.+|.-.|..+...|. +.|+++-+.
T Consensus        45 ~~kVvVIGG-GdtA~D~A~~a~r~GA-~~V~vi~rr   78 (153)
T d1gtea3          45 RGAVIVLGA-GDTAFDCATSALRCGA-RRVFLVFRK   78 (153)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHTTC-SEEEEECSS
T ss_pred             CCEEEEECC-ChhHHHHHHHHHHcCC-cceeEEEeC
Confidence            348999998 9999999988887765 477777654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=2.3  Score=35.20  Aligned_cols=108  Identities=9%  Similarity=0.048  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCChhH-H---HHhhc-cccCcceeeeeccCCHHHHhC----C
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-T---ADISH-MDTNAVVRGFLGQQQLEDALT----G  114 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~~~~-~---~dl~~-~~~~~~~~~i~~t~d~~~al~----~  114 (270)
                      ..+.+|.|+|+ |  +..++..++...-..+|+++|+++.... +   ....+ ....++++.+  ..|-.+-++    .
T Consensus        77 ~~pk~vLiiGg-G--~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~--~~Da~~~l~~~~~~  151 (285)
T d2o07a1          77 PNPRKVLIIGG-G--DGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLH--VGDGFEFMKQNQDA  151 (285)
T ss_dssp             SSCCEEEEEEC-T--TSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE--ESCHHHHHHTCSSC
T ss_pred             cCcCeEEEeCC-C--chHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEE--EccHHHHHhcCCCC
Confidence            44569999998 6  3445555665544569999999864111 1   11111 1123555533  234333333    4


Q ss_pred             CCEEEEcCCCCCCCCCchhhhHHhhHHHHHHHHHHHhHh-CCCCEEEEec-CC
Q 024248          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS-NP  165 (270)
Q Consensus       115 ADvVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~s-NP  165 (270)
                      -|+||+-.-.+.  +.. .      .-..++..+.+++. .|+++++.-+ +|
T Consensus       152 yDvIi~D~~~p~--~~~-~------~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  195 (285)
T d2o07a1         152 FDVIITDSSDPM--GPA-E------SLFKESYYQLMKTALKEDGVLCCQGECQ  195 (285)
T ss_dssp             EEEEEEECC--------------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCEEEEcCCCCC--Ccc-c------ccccHHHHHHHHHhcCCCCeEEEeccch
Confidence            599998642221  111 1      12234455555543 4888765433 44

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=83.29  E-value=1.6  Score=32.40  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEeCCCC--hhHHHHhhccccCcceeeeeccCCHHHHhCCCCEEEE
Q 024248           45 PGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (270)
Q Consensus        45 ~~mKI~IIGa~--G~VGs~la~~l~~~g~~~eV~LvD~~~~--~~~~~dl~~~~~~~~~~~i~~t~d~~~al~~ADvVIi  120 (270)
                      ...||+++|=-  +.|..+++..+...|.  +++++-....  .....+.... ....   +..+.|++++++++|+|..
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~-~~~~---~~~~~d~~~av~~aDvvy~   76 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELRE-KGMK---VVETTTLEDVIGKLDVLYV   76 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHH-TTCC---EEEESCTHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHh-hccc---ceeecCHHHhhccCcEEEe
Confidence            45699999962  5788888888888887  8888865431  1111111111 1112   2235688999999999887


Q ss_pred             cC
Q 024248          121 PA  122 (270)
Q Consensus       121 ~a  122 (270)
                      ..
T Consensus        77 ~~   78 (157)
T d1ml4a2          77 TR   78 (157)
T ss_dssp             CC
T ss_pred             ec
Confidence            63

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.19  E-value=0.54  Score=35.58  Aligned_cols=37  Identities=27%  Similarity=0.218  Sum_probs=27.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      |.||+|+|+||.||.....-+.+.+--=+|+.+-.+.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            4589999999999999888776653211777776554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=82.63  E-value=4.1  Score=33.31  Aligned_cols=37  Identities=22%  Similarity=0.212  Sum_probs=25.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        44 ~~~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      .++.+|.|+|+ |  +..++..++...-..+|.++|+++.
T Consensus        74 ~~p~~vLiiGg-G--~G~~~~~~l~~~~~~~i~~VEID~~  110 (274)
T d1iy9a_          74 PNPEHVLVVGG-G--DGGVIREILKHPSVKKATLVDIDGK  110 (274)
T ss_dssp             SSCCEEEEESC-T--TCHHHHHHTTCTTCSEEEEEESCHH
T ss_pred             CCcceEEecCC-C--CcHHHHHHHhcCCcceEEEecCCHH
Confidence            44569999998 6  3344555555444469999999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=81.72  E-value=4.5  Score=31.87  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=20.5

Q ss_pred             eEEEEcCCCchHHHH-----HHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPL-----AMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~l-----a~~l~~~g~~~eV~LvD~~~   82 (270)
                      -|+++|-+| +|-+.     |..+..++.  .|.++-.|.
T Consensus        11 vi~lvGptG-vGKTTTiAKLA~~~~~~g~--kV~lit~Dt   47 (211)
T d2qy9a2          11 VILMVGVNG-VGKTTTIGKLARQFEQQGK--SVMLAAGDT   47 (211)
T ss_dssp             EEEEECCTT-SCHHHHHHHHHHHHHTTTC--CEEEECCCT
T ss_pred             EEEEECCCC-CCHHHHHHHHHHHHHHCCC--cEEEEeccc
Confidence            366788755 56643     234455665  888888775

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.54  E-value=1.3  Score=32.11  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=28.0

Q ss_pred             CCeEEEEcCCC-----------chHHHHHHHHHhCCCccEEEEEeCCCC
Q 024248           46 GFKVAVLGAAG-----------GIGQPLAMLMKINPLVSVLHLYDVVNT   83 (270)
Q Consensus        46 ~mKI~IIGa~G-----------~VGs~la~~l~~~g~~~eV~LvD~~~~   83 (270)
                      ..||.|+|+ |           +-+.+.+..|.+.|+  ++++++.|++
T Consensus         4 ~kkvlViGs-Gp~rIGq~~EfDy~~~~a~~aLk~~g~--~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGG-GPNRIGQGIEFDYCCVHASLALREDGY--ETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECC-CSCBTTBCHHHHHHHHHHHHHHHHTTC--EEEEECCCTT
T ss_pred             CCEEEEECC-CcCcccccchhhHHHHHHHHHHHhcCC--eEEEEecChh
Confidence            459999997 7           445666778888999  9999998764

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.56  E-value=0.72  Score=41.87  Aligned_cols=35  Identities=11%  Similarity=0.187  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        46 ~mKI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      ..||+|+|+ |-+|+.++..|+..|. +.++++|-+.
T Consensus        25 ~s~VlvvG~-gglG~Ei~knLvl~GV-g~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINA-TATGTEILKNLVLPGI-GSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCC-SHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence            348999998 9999999999999886 6999999864

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=80.24  E-value=0.83  Score=36.75  Aligned_cols=32  Identities=13%  Similarity=0.089  Sum_probs=29.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEeCCC
Q 024248           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (270)
Q Consensus        48 KI~IIGa~G~VGs~la~~l~~~g~~~eV~LvD~~~   82 (270)
                      .+.|||+ |..|...|..+++.|.  +|++++..+
T Consensus        44 DvvVIGg-G~aG~~aA~~~a~~G~--kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGG-GAAGRFGSAYLRAMGG--RQLIVDRWP   75 (261)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            5999998 9999999999999998  999999865