Citrus Sinensis ID: 024256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHccccccEEEEcccccHHHHHHHHHHccccEEEEEEccEEEEEEEHHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHccccEEcEEcccccEEEEEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHEEccccccEEEccccHHHHHHHHHHHccccEEEEEEcccEEEEEccHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHccccccccEEcccccEEEEEHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MERAAEKGKAIAAAVEGVEkhwgtsisgpnTFIETLRERmfrpslstiipekskvvtisptDTVLMATKKMLELRLSSAvvtvenkprgiltsKDILMRVISqnlpadstlvekvmtpnpecatidtpivDALHimhdgkflhlpvvdrdgdvvdVVDVIHITHAAVATvgntagsnnEAASTMMQKFWDSamalspnddeednrsegslkfasegadtarylsypspspgvpsafafkvqdnkglmhrftcgmlpfpnfievtnyeylv
Flexible Loop (DISEMBL)
meraaekgKAIAAAVegvekhwgtsisgpnTFIETLRERMFRPslstiipekskvvtisptDTVLMATKKMLELRLssavvtvenkprgiltskdiLMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAavatvgntagSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Low Complexity Region (SEG)
MERaaekgkaiaaavegvekHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPvvdrdgdvvdvvdvIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Disordered region (IsUnstruct)
***********AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT*************************************************************************************************
Disordered Region (DISOPRED)
***************EGVEKHWG*************************IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA*********************FWD*********************************************FAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Disordered Region (DISEMBL)
**********IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMAL*************SLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Disordered Region (DISPRO)
*********AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMA*************************************VPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEYLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
P0DH79	548	CBS domain-containing pro	yes	no	0.903	0.445	0.683	7e-96
Q0WLC7	548	CBS domain-containing pro	yes	no	0.903	0.445	0.683	7e-96
Q9LF97	556	CBS domain-containing pro	no	no	0.918	0.446	0.581	1e-81
Q9FMV3	543	CBS domain-containing pro	no	no	0.896	0.445	0.688	5e-81
Q9SJQ5	536	CBS domain-containing pro	no	no	0.929	0.468	0.549	3e-76
O13965	730	Meiotically up-regulated	yes	no	0.603	0.223	0.252	2e-11
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.407	0.670	0.359	3e-08
P50100	196	Uncharacterized protein M	no	no	0.440	0.607	0.292	1e-07
Q58069	194	Uncharacterized protein M	yes	no	0.340	0.474	0.343	5e-06
Q9LEV3	206	CBS domain-containing pro	no	no	0.388	0.509	0.288	3e-05

>sp|P0DH79|Y5064_ARATH CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1

 Score =  350 bits (897), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 173/253 (68%), Positives = 207/253 (81%), Gaps = 9/253 (3%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MER+ EKGKAIAAAVEGVEK+WGTSI+GPNTF+ETLRER+F+PSLSTIIPE +KV+ +  
Sbjct: 186 MERSVEKGKAIAAAVEGVEKNWGTSIAGPNTFMETLRERIFKPSLSTIIPENTKVLKVGL 245

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
            +TVL  T KM+E + S+A+V VENK  GILTSKDILMRVISQNLP ++T VEKVMTPNP
Sbjct: 246 DETVLGVTMKMVEYQSSAAMVMVENKLVGILTSKDILMRVISQNLPQETTTVEKVMTPNP 305

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           E AT+D  IV+ALHIMH+GKFLHLPV+D+DGDVV V+DVIHITHAAV T G+TAG NNE 
Sbjct: 306 ESATVDMAIVEALHIMHNGKFLHLPVLDKDGDVVAVIDVIHITHAAVTTAGSTAGINNET 365

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRS-EGSLKFASEGADTARYLSYPSPSPGVPSAFAFK 239
           A++MMQKFWDSAMALSPN+D ++ RS E S+K +SE  +  +  SY       P+ FAFK
Sbjct: 366 ANSMMQKFWDSAMALSPNEDGDETRSEEESMKLSSE-IEVTKSFSY-------PNTFAFK 417

Query: 240 VQDNKGLMHRFTC 252
           +QD KG MHRF C
Sbjct: 418 LQDKKGRMHRFMC 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana GN=CBSCBSPB4 PE=2 SV=2

 Score =  350 bits (897), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 173/253 (68%), Positives = 207/253 (81%), Gaps = 9/253 (3%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MER+ EKGKAIAAAVEGVEK+WGTSI+GPNTF+ETLRER+F+PSLSTIIPE +KV+ +  
Sbjct: 186 MERSVEKGKAIAAAVEGVEKNWGTSIAGPNTFMETLRERIFKPSLSTIIPENTKVLKVGL 245

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
            +TVL  T KM+E + S+A+V VENK  GILTSKDILMRVISQNLP ++T VEKVMTPNP
Sbjct: 246 DETVLGVTMKMVEYQSSAAMVMVENKLVGILTSKDILMRVISQNLPQETTTVEKVMTPNP 305

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           E AT+D  IV+ALHIMH+GKFLHLPV+D+DGDVV V+DVIHITHAAV T G+TAG NNE 
Sbjct: 306 ESATVDMAIVEALHIMHNGKFLHLPVLDKDGDVVAVIDVIHITHAAVTTAGSTAGINNET 365

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRS-EGSLKFASEGADTARYLSYPSPSPGVPSAFAFK 239
           A++MMQKFWDSAMALSPN+D ++ RS E S+K +SE  +  +  SY       P+ FAFK
Sbjct: 366 ANSMMQKFWDSAMALSPNEDGDETRSEEESMKLSSE-IEVTKSFSY-------PNTFAFK 417

Query: 240 VQDNKGLMHRFTC 252
           +QD KG MHRF C
Sbjct: 418 LQDKKGRMHRFMC 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1

 Score =  302 bits (774), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 193/253 (76%), Gaps = 5/253 (1%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           ME+AAE+G A+AAAVEGVEK WG+  S P  FIETLRERMF+P+LSTII + SKV  ++P
Sbjct: 187 MEKAAEQGSALAAAVEGVEKQWGSGYSAPYAFIETLRERMFKPALSTIITDNSKVALVAP 246

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           +D V +A K+M +LR++S +++  NK  GILTSKDILMRV++QNL  + TLVEKVMTPNP
Sbjct: 247 SDPVSVAAKRMRDLRVNSVIISTGNKISGILTSKDILMRVVAQNLSPELTLVEKVMTPNP 306

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECA+++T I+DALH MHDGKFLHLP++D+DG     VDV+ ITHAA++ V N++G+ N+ 
Sbjct: 307 ECASLETTILDALHTMHDGKFLHLPIIDKDGSAAACVDVLQITHAAISMVENSSGAVNDM 366

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
           A+TMMQKFWDSA+AL P DD  D +SE S       +D  +  SY  PS G+ ++F+FK 
Sbjct: 367 ANTMMQKFWDSALALEPPDD-SDTQSEMSAMM--HHSDIGKLSSY--PSLGLGNSFSFKF 421

Query: 241 QDNKGLMHRFTCG 253
           +D KG +HRFT G
Sbjct: 422 EDLKGRVHRFTSG 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMV3|Y5349_ARATH CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana GN=CBSCBSPB1 PE=1 SV=1

 Score =  301 bits (770), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 172/250 (68%), Positives = 203/250 (81%), Gaps = 8/250 (3%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKGKAIAAAVEGVEK WGT+ S PNTFIETLR+RMFRPSLSTIIP+ +KV+ +SP
Sbjct: 178 MERAAEKGKAIAAAVEGVEKSWGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKVLKVSP 237

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           TDTVL   KKM+E + S AVV +E+K RGI TSKDILMRV+++NLP   TLVE VMT NP
Sbjct: 238 TDTVLTVAKKMVEFQSSCAVVIIEDKLRGIFTSKDILMRVVAENLPPSETLVETVMTQNP 297

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           E   +DTPIV+ALHIMH+GKFLHLPV D++GDVV VVDVIH+THAAVAT G TAG  NEA
Sbjct: 298 ESTIVDTPIVEALHIMHEGKFLHLPVTDKEGDVVAVVDVIHVTHAAVATAGTTAGIGNEA 357

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
            +TMMQKFWDSAMALSPN+D+ED+RSE S+K ASE A+T +  S+P       + F+FK+
Sbjct: 358 TNTMMQKFWDSAMALSPNEDDEDSRSESSMKVASE-AETGK--SFP-----FANTFSFKI 409

Query: 241 QDNKGLMHRF 250
           +D K   HRF
Sbjct: 410 EDKKHRKHRF 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=2 SV=1

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 145/264 (54%), Positives = 190/264 (71%), Gaps = 13/264 (4%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           ME+AAE+G A+A AVE  E+HWG   SG   FI+TLRERMF+P+LSTI+ E +KV  +S 
Sbjct: 185 MEKAAEQGSALATAVE--ERHWG---SGNFAFIDTLRERMFKPALSTIVTENTKVALVSA 239

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           +D V +A+KKM +LR++S ++ V NK  GILTSKDILMRV++QNL  + TLVEKVMTPNP
Sbjct: 240 SDPVFVASKKMRDLRVNSVIIAVGNKIHGILTSKDILMRVVAQNLSPELTLVEKVMTPNP 299

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV-GNTAGSNNE 179
           ECA+I+T I+DALHIMHDGKFLHLPV D+DG  V  +DV+ ITHAA++TV  N++G+ N+
Sbjct: 300 ECASIETTILDALHIMHDGKFLHLPVFDKDGFAVACLDVLQITHAAISTVENNSSGAVND 359

Query: 180 AASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFK 239
            A+TMMQKFWDSA+AL P +D E +    ++   SEG  +        PS G+ S+FAFK
Sbjct: 360 MANTMMQKFWDSALALEPPEDYETHSDMSAMLINSEGKQSC-------PSQGLVSSFAFK 412

Query: 240 VQDNKGLMHRFTCGMLPFPNFIEV 263
            +D KG + RF      F   + V
Sbjct: 413 FEDRKGRVQRFNSTGESFEELMSV 436

Arabidopsis thaliana (taxid: 3702)

>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug70 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 15/178 (8%)

Query: 3   RAAEKGKAIAAAVEGVEKHW----------GTSISGPNT-----FIETLRERMFRPSLST 47
           R  E  + +  A+EG ++             +S+SG +      ++E+L+++     + +
Sbjct: 200 RQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLEYVESLKKKASGLEIMS 259

Query: 48  IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPA 107
           +I    +   +    TV  AT+ M    +S+ +V       G+ T+ D+++RV++  L  
Sbjct: 260 LIDSSEEPFLVGTRTTVAEATESMARSGVSAVLVMDNGAVSGVFTAHDVVLRVLAAGLDP 319

Query: 108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
             + V +VMTP+P+CA     +  AL  M +GKF +LPVVD    ++ ++ + H+  A
Sbjct: 320 YRSSVIRVMTPHPDCALASLRVSTALERMIEGKFSNLPVVDESDAIIGMLSLFHLATA 377

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTL 111
           +KV  + P  T+  A K+M E  L S VV   +N+  GI+T +DI+    + N   DS  
Sbjct: 11  TKVYVVKPNVTIAEAAKEMKEHNLGSLVVIDSQNRVVGIITERDIVKA--ASNRDIDSP- 67

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
           VEK MT + +  T DT + DAL IM +  F HLP++  +G +  +V +  +  A
Sbjct: 68  VEKYMTKDVKGVTEDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARA 121

Acidianus ambivalens (taxid: 2283)

>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4 SV=2

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 110
           +  V+T SPT+T +    KM E  + S V+  E ++P GI+T +D++++V+SQ    D  
Sbjct: 11  RRDVITGSPTETAVEIAYKMREHGIGSVVIVNEKDEPIGIITERDLVIKVVSQGKNPDEV 70

Query: 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAV 167
           +   +M+        D  + +A+ +M D     LP+VD +G ++ +V   D++ +    V
Sbjct: 71  IARDIMSQPVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLV 130

Query: 168 ATV 170
           AT+
Sbjct: 131 ATI 133

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 71  MLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIV 130
           M E  + + V+   NKP GI+T +DI+ RV+S+NL     L E+VM+        +  I 
Sbjct: 33  MTENNIGAVVIVENNKPIGIVTERDIVKRVVSKNLKPKDVLAEEVMSKKIITIPQNASIT 92

Query: 131 DALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 163
           +A  IM       LPVV +DG++V +V   D++ ++
Sbjct: 93  EAAKIMATHGIKRLPVV-KDGELVGIVTQSDIVRVS 127

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 62  DTVLMATKKMLELRLSSAVVTVENKPR---GILTSKDILMRVISQNLPADSTLVEKVMTP 118
           DTV  A K M +  + + VV    + +   GI+T +D L ++I Q   + ST V  +MT 
Sbjct: 79  DTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 138

Query: 119 NPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167
             +  T+  +T ++ A+ +M D +  H+PV+ +D  ++ +V +  +  A V
Sbjct: 139 ENKLITVTPETKVLRAMQLMTDNRIRHIPVI-KDKGMIGMVSIGDVVRAVV 188

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
118484915	541	unknown [Populus trichocarpa]	0.959	0.478	0.793	1e-118
449440540	540	PREDICTED: CBS domain-containing protein	0.959	0.479	0.789	1e-117
255540203	545	conserved hypothetical protein [Ricinus	0.959	0.475	0.793	1e-117
359491097	541	PREDICTED: CBS domain-containing protein	0.955	0.476	0.762	1e-110
225456355	546	PREDICTED: CBS domain-containing protein	0.955	0.472	0.762	1e-110
125528914	497	hypothetical protein OsI_04983 [Oryza sa	0.925	0.503	0.738	1e-108
224122050	535	predicted protein [Populus trichocarpa]	0.955	0.482	0.731	1e-108
357126564	550	PREDICTED: CBS domain-containing protein	0.959	0.470	0.701	1e-106
326509897	550	predicted protein [Hordeum vulgare subsp	0.925	0.454	0.718	1e-105
356511510	542	PREDICTED: CBS domain-containing protein	0.925	0.461	0.743	1e-104

>gi|118484915|gb|ABK94323.1| unknown [Populus trichocarpa]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/261 (79%), Positives = 229/261 (87%), Gaps = 2/261 (0%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKGKAIAAAVEGVEK+WGTSIS PNTFIETLRERMFRP+LSTIIPE SKVVT+SP
Sbjct: 175 MERAAEKGKAIAAAVEGVEKNWGTSISVPNTFIETLRERMFRPALSTIIPENSKVVTVSP 234

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           ++TVL+ TKKMLE R   AVVTV+ KPRGI TSKDILMRVI+QNLP DSTLVEKVMTPNP
Sbjct: 235 SETVLVVTKKMLESRSGCAVVTVDEKPRGIFTSKDILMRVIAQNLPPDSTLVEKVMTPNP 294

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECATIDTPIVDALH MHDGKFLHLPVVDRDG++V V+DVIHITHAAVATVGNT G+NNE 
Sbjct: 295 ECATIDTPIVDALHTMHDGKFLHLPVVDRDGNIVAVIDVIHITHAAVATVGNTTGANNET 354

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
           ASTMMQKFWDSAMA+SPNDDE++ RSEGSLK ASEG +TAR L Y  PS G+P+ F+FK+
Sbjct: 355 ASTMMQKFWDSAMAMSPNDDEDETRSEGSLKIASEGTETARSLLY--PSSGLPNNFSFKI 412

Query: 241 QDNKGLMHRFTCGMLPFPNFI 261
           +D KG MHRFTC      + I
Sbjct: 413 EDKKGRMHRFTCETRSLTDLI 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440540|ref|XP_004138042.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus] gi|449520507|ref|XP_004167275.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/261 (78%), Positives = 232/261 (88%), Gaps = 2/261 (0%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKGKAIAAAVEGVEK WGTS+SGPNTFIETLRERMFRPSLSTIIPE  K+VT+ P
Sbjct: 175 MERAAEKGKAIAAAVEGVEKSWGTSVSGPNTFIETLRERMFRPSLSTIIPENLKIVTVPP 234

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           T+TVLMATKKMLELR+SSAVVTV++KP+GILTSKDILMR+I+QNLP DSTLVEKVMTPNP
Sbjct: 235 TETVLMATKKMLELRVSSAVVTVDSKPQGILTSKDILMRLIAQNLPPDSTLVEKVMTPNP 294

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECA+IDTPIVDALH MHDGKFLHLPVVDRDG+VV VVDVIHITHAAVATVGNT+G  NEA
Sbjct: 295 ECASIDTPIVDALHTMHDGKFLHLPVVDRDGNVVAVVDVIHITHAAVATVGNTSGVGNEA 354

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
           AS+MMQKFWDSAMALSPNDD+++ RSEGS+K ASE  DT R L  P PSPG+ + F+FK+
Sbjct: 355 ASSMMQKFWDSAMALSPNDDDDELRSEGSMKLASEETDTLRTL--PFPSPGMSNTFSFKL 412

Query: 241 QDNKGLMHRFTCGMLPFPNFI 261
           +D +G MHRF+C      + I
Sbjct: 413 EDRRGRMHRFSCDTRSLTDVI 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540203|ref|XP_002511166.1| conserved hypothetical protein [Ricinus communis] gi|223550281|gb|EEF51768.1| conserved hypothetical protein [Ricinus communis]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/261 (79%), Positives = 227/261 (86%), Gaps = 2/261 (0%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKGKAIAAAVEGVEK+WGT+ SGPNTFIETLRERMFRPSLSTI+PE SKVVT+ P
Sbjct: 178 MERAAEKGKAIAAAVEGVEKNWGTTFSGPNTFIETLRERMFRPSLSTILPENSKVVTVLP 237

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           T+TVL  TKKMLE R SSAVV V+ KPRGILTSKDILMRVI+QNLP+DSTL EKVMTPNP
Sbjct: 238 TETVLAVTKKMLESRSSSAVVIVDQKPRGILTSKDILMRVIAQNLPSDSTLAEKVMTPNP 297

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECATIDTPIVDALH MHDGKFLHLPV+DRDG+VV VVDVIHITHAAVATVG+TAG NNEA
Sbjct: 298 ECATIDTPIVDALHTMHDGKFLHLPVLDRDGNVVAVVDVIHITHAAVATVGSTAGVNNEA 357

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
           ASTMMQKFWDSAMALSPN+D++D RSEGSLK  SEGA+T R L Y  PS G P++F FK+
Sbjct: 358 ASTMMQKFWDSAMALSPNEDDDDTRSEGSLKLPSEGAETGRSLPY--PSAGFPNSFGFKI 415

Query: 241 QDNKGLMHRFTCGMLPFPNFI 261
           +D KG MHRFT       + I
Sbjct: 416 EDKKGRMHRFTSDTRSLTDLI 436

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491097|ref|XP_003634219.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera] gi|297734436|emb|CBI15683.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/261 (76%), Positives = 221/261 (84%), Gaps = 3/261 (1%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKGKAIAAAVEGVEK+WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SP
Sbjct: 175 MERAAEKGKAIAAAVEGVEKNWGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSP 234

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           TDTVL A KKMLEL+LS AVV VEN+P+GILTSKDILMRVI+QNL  +ST VEKVMTPNP
Sbjct: 235 TDTVLTAAKKMLELKLSCAVVAVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNP 294

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECATIDTPIVDALH MHDGKFLHLPV+DRDG VV V DVIHITHAAVATVG  AG NNEA
Sbjct: 295 ECATIDTPIVDALHTMHDGKFLHLPVIDRDGGVVAVADVIHITHAAVATVGGNAGVNNEA 354

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
           AS++MQKFWDSAMAL  +DDEE  RSEGSLK ASEG +  R L Y S +  + + FAFK+
Sbjct: 355 ASSLMQKFWDSAMALGTDDDEE-TRSEGSLKLASEGTEIGRTLPYTSSA--MHNTFAFKI 411

Query: 241 QDNKGLMHRFTCGMLPFPNFI 261
           +D +G MHRFTC      + I
Sbjct: 412 EDKRGRMHRFTCDTRSLTDVI 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456355|ref|XP_002283958.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 1 [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/261 (76%), Positives = 221/261 (84%), Gaps = 3/261 (1%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKGKAIAAAVEGVEK+WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SP
Sbjct: 180 MERAAEKGKAIAAAVEGVEKNWGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSP 239

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           TDTVL A KKMLEL+LS AVV VEN+P+GILTSKDILMRVI+QNL  +ST VEKVMTPNP
Sbjct: 240 TDTVLTAAKKMLELKLSCAVVAVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNP 299

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECATIDTPIVDALH MHDGKFLHLPV+DRDG VV V DVIHITHAAVATVG  AG NNEA
Sbjct: 300 ECATIDTPIVDALHTMHDGKFLHLPVIDRDGGVVAVADVIHITHAAVATVGGNAGVNNEA 359

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
           AS++MQKFWDSAMAL  +DDEE  RSEGSLK ASEG +  R L Y S +  + + FAFK+
Sbjct: 360 ASSLMQKFWDSAMALGTDDDEE-TRSEGSLKLASEGTEIGRTLPYTSSA--MHNTFAFKI 416

Query: 241 QDNKGLMHRFTCGMLPFPNFI 261
           +D +G MHRFTC      + I
Sbjct: 417 EDKRGRMHRFTCDTRSLTDVI 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528914|gb|EAY77028.1| hypothetical protein OsI_04983 [Oryza sativa Indica Group] gi|125573153|gb|EAZ14668.1| hypothetical protein OsJ_04591 [Oryza sativa Japonica Group]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/252 (73%), Positives = 217/252 (86%), Gaps = 2/252 (0%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKGKAIAAAVEGVEKHWG S+SGPNTFIETLRERMFRPSLSTII E SKVVT++P
Sbjct: 130 MERAAEKGKAIAAAVEGVEKHWGASVSGPNTFIETLRERMFRPSLSTIISENSKVVTVAP 189

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           TDTVL A+KKMLE+++SSAVV +ENKP GILTS+DILMRVI+QNLP +ST VEKVMT  P
Sbjct: 190 TDTVLTASKKMLEVKVSSAVVAIENKPGGILTSRDILMRVIAQNLPPESTTVEKVMTQTP 249

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECAT+DTPI+DALH MHDGKFLHLPV+D+DG+VV VVDV+HITHAA+ATVGN+AGS +EA
Sbjct: 250 ECATVDTPILDALHTMHDGKFLHLPVLDKDGNVVTVVDVLHITHAAIATVGNSAGSGSEA 309

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
            S MMQ+FWDSAM++ P DD++D+RSEGS K ASE  D  R   Y  P+ G+ + F FK+
Sbjct: 310 TSAMMQRFWDSAMSIGPLDDDDDSRSEGSTKVASEATDVGRSAFY--PASGLSNTFGFKI 367

Query: 241 QDNKGLMHRFTC 252
           QD +G MHRF C
Sbjct: 368 QDKQGRMHRFNC 379

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122050|ref|XP_002318739.1| predicted protein [Populus trichocarpa] gi|222859412|gb|EEE96959.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/268 (73%), Positives = 218/268 (81%), Gaps = 10/268 (3%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKGKAIAAAVEGVEK+WGTSIS PNTFIETLRERMFRP+LSTIIPE SKVVT+SP
Sbjct: 163 MERAAEKGKAIAAAVEGVEKNWGTSISVPNTFIETLRERMFRPALSTIIPENSKVVTVSP 222

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           ++TVL+ TKKMLE R   AVVTV+ KPRGI TSKDILMRVI+QNLP DSTLVEKVMTPNP
Sbjct: 223 SETVLVVTKKMLESRSGCAVVTVDEKPRGIFTSKDILMRVIAQNLPPDSTLVEKVMTPNP 282

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECATIDTPIVDALH MHDGKFLHLPVVDRDG++V V+DVIHITHAAVATVGN  G+NNE 
Sbjct: 283 ECATIDTPIVDALHTMHDGKFLHLPVVDRDGNIVAVIDVIHITHAAVATVGNATGANNET 342

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKF-------ASEGADTARYLSYPSPSPGVP 233
           ASTMMQKFWDSAMA+SPNDDE++ R    L         +S G     Y S   PS G+P
Sbjct: 343 ASTMMQKFWDSAMAMSPNDDEDETRRLDVLVLILSKILISSTGFT---YTSLLYPSSGLP 399

Query: 234 SAFAFKVQDNKGLMHRFTCGMLPFPNFI 261
           + F+FK++D KG MHRFTC      + I
Sbjct: 400 NNFSFKIEDKKGRMHRFTCETRSLTDLI 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126564|ref|XP_003564957.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Brachypodium distachyon]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/261 (70%), Positives = 216/261 (82%), Gaps = 2/261 (0%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKGKAIAAAVEGVEKHWGT++SGPNTF+ETLRERMFRPSLSTII E SKVVT++P
Sbjct: 184 MERAAEKGKAIAAAVEGVEKHWGTAVSGPNTFVETLRERMFRPSLSTIISENSKVVTVAP 243

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           TDTVL A+KKMLEL++SSAVV +ENKP GILTS+DILMRVI+QNLP +ST VEKVMT +P
Sbjct: 244 TDTVLTASKKMLELKVSSAVVAIENKPGGILTSRDILMRVIAQNLPPESTTVEKVMTQSP 303

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECAT DTPI++ALH MHDGKFLHLPV+D DG+VV V+DV+HITHAA+ATVGN+  + +EA
Sbjct: 304 ECATTDTPILEALHTMHDGKFLHLPVLDSDGNVVTVIDVLHITHAAIATVGNSGAAGSEA 363

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
            S+MMQ+FWDSAM+  P DD++D+RSEGS K ASE  D  R   Y  P+ G+ S F FK+
Sbjct: 364 TSSMMQRFWDSAMSSGPLDDDDDSRSEGSTKVASEATDIGRSTFY--PASGLSSTFGFKI 421

Query: 241 QDNKGLMHRFTCGMLPFPNFI 261
           QD +G MHRF C        I
Sbjct: 422 QDKQGRMHRFNCDTSSLTELI 442

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326509897|dbj|BAJ87164.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/252 (71%), Positives = 215/252 (85%), Gaps = 2/252 (0%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
           MERAAEKG+AIAAAVEGVEKHWGTS+SGPNTF+ETLRERMFRPSL+TII E SKV T++P
Sbjct: 184 MERAAEKGRAIAAAVEGVEKHWGTSVSGPNTFVETLRERMFRPSLATIISENSKVATVAP 243

Query: 61  TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
           TDTVL A+KKMLEL++SSAVV +ENKP GILTS+DILMRVI+QNLP +ST V KVMT +P
Sbjct: 244 TDTVLTASKKMLELKVSSAVVAIENKPGGILTSRDILMRVIAQNLPPESTTVGKVMTQSP 303

Query: 121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA 180
           ECATIDTPI++ALH MHDGKFLHLPV+DRDG VV VVDV+HITHAA+ATVGN+  + +EA
Sbjct: 304 ECATIDTPILEALHTMHDGKFLHLPVLDRDGSVVTVVDVLHITHAAIATVGNSGATGSEA 363

Query: 181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
            S+MMQ+FWDSAM+  P DD++D+RSEGS K ASE AD  R   +  P+ G+ + F FK+
Sbjct: 364 TSSMMQRFWDSAMSSGPLDDDDDSRSEGSTKVASEVADMGRSAFF--PASGLSNTFGFKI 421

Query: 241 QDNKGLMHRFTC 252
           QD +G MHRF C
Sbjct: 422 QDKQGRMHRFNC 433

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511510|ref|XP_003524468.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/253 (74%), Positives = 218/253 (86%), Gaps = 3/253 (1%)

Query: 1   MERAAEKGKAIAAAVEGVEKHWGTSISGPN-TFIETLRERMFRPSLSTIIPEKSKVVTIS 59
           MERAAEKGKAIAAAVEG+EKHWGTS    N TF+ETLRE++F+PSLSTIIPE SKVVT+S
Sbjct: 175 MERAAEKGKAIAAAVEGIEKHWGTSTPASNSTFMETLREQIFKPSLSTIIPENSKVVTVS 234

Query: 60  PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 119
           PTD+VL  TKKMLELR SSAVVT+++KP GILTSKDILMRVI+Q+LP  STLVEKVMTPN
Sbjct: 235 PTDSVLTTTKKMLELRASSAVVTIDDKPCGILTSKDILMRVIAQSLPPSSTLVEKVMTPN 294

Query: 120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE 179
           PEC TIDTPIVDALH MHDGKFLHLPVV+R G VV  VDVIHITHAAVATVGNT   NNE
Sbjct: 295 PECGTIDTPIVDALHTMHDGKFLHLPVVNRGGIVVATVDVIHITHAAVATVGNTPNFNNE 354

Query: 180 AASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFK 239
           AA++M+QKFWDSAMAL+PN+++ED++SE SLK  SEG +T R +SY + S  + + F+FK
Sbjct: 355 AANSMIQKFWDSAMALAPNEEDEDSQSEASLKMISEGGETGRSISYLTSS--MQNVFSFK 412

Query: 240 VQDNKGLMHRFTC 252
           +QD KG +HRFTC
Sbjct: 413 LQDRKGRLHRFTC 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2167331	543	AT5G63490 "AT5G63490" [Arabido	0.896	0.445	0.58	2.1e-70
ASPGD|ASPL0000033419	666	AN5716 [Emericella nidulans (t	0.622	0.252	0.318	1.3e-16
CGD|CAL0003543	605	orf19.5238 [Candida albicans (	0.766	0.342	0.288	1.4e-15
POMBASE|SPAC24C9.05c	730	mug70 "conserved protein Mug20	0.629	0.232	0.241	3.9e-08
UNIPROTKB|Q5LRC8	144	SPO2201 "CBS domain protein" [	0.374	0.701	0.288	6.2e-05
TIGR_CMR|SPO_2201	144	SPO_2201 "CBS domain protein"	0.374	0.701	0.288	6.2e-05
UNIPROTKB|Q8EDA6	620	SO_2856 "Putative nucleotidylt	0.362	0.158	0.336	0.00033
TIGR_CMR|SO_2856	620	SO_2856 "CBS domain protein" [	0.362	0.158	0.336	0.00033
TAIR|locus:2183740	206	CBSX3 "AT5G10860" [Arabidopsis	0.311	0.407	0.303	0.00033

TAIR|locus:2167331 AT5G63490 "AT5G63490" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 145/250 (58%), Positives = 174/250 (69%)

Query:     1 MERXXXXXXXXXXXXXXXXXHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 60
             MER                  WGT+ S PNTFIETLR+RMFRPSLSTIIP+ +KV+ +SP
Sbjct:   178 MERAAEKGKAIAAAVEGVEKSWGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKVLKVSP 237

Query:    61 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 120
             TDTVL   KKM+E + S AVV +E+K RGI TSKDILMRV+++NLP   TLVE VMT NP
Sbjct:   238 TDTVLTVAKKMVEFQSSCAVVIIEDKLRGIFTSKDILMRVVAENLPPSETLVETVMTQNP 297

Query:   121 ECATIDTPIVDALHIMHDGKFLHLPXXXXXXXXXXXXXXIHITHAAVATVGNTAGSNNEA 180
             E   +DTPIV+ALHIMH+GKFLHLP              IH+THAAVAT G TAG  NEA
Sbjct:   298 ESTIVDTPIVEALHIMHEGKFLHLPVTDKEGDVVAVVDVIHVTHAAVATAGTTAGIGNEA 357

Query:   181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV 240
              +TMMQKFWDSAMALSPN+D+ED+RSE S+K ASE A+T +  S+P       + F+FK+
Sbjct:   358 TNTMMQKFWDSAMALSPNEDDEDSRSESSMKVASE-AETGK--SFP-----FANTFSFKI 409

Query:   241 QDNKGLMHRF 250
             +D K   HRF
Sbjct:   410 EDKKHRKHRF 419

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

ASPGD|ASPL0000033419 AN5716 [Emericella nidulans (taxid:162425)]

 Score = 203 (76.5 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 57/179 (31%), Positives = 91/179 (50%)

Query:    32 FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL 91
             ++E LR +M  P+L +++ +     T+S   TV  A   M E   ++ +V  +    GI 
Sbjct:   264 YVEALRSKMSGPTLESVL-DGMPPTTVSVRTTVKEAAALMKEHHTTALLVQDQGSITGIF 322

Query:    92 TSKDILMRVISQNL-PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPXXXXX 150
             TSKDI++RVI+  L PA  ++V +VMTP+P+ A  D  I  AL  MHDG +L+LP     
Sbjct:   323 TSKDIVLRVIAPGLDPATCSVV-RVMTPHPDFAPSDMSIQAALRKMHDGHYLNLPVMNEG 381

Query:   151 XXXXXXXXXIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGS 209
                      + +T+A +  + + +  ++E  +    KFW S       D E D+   GS
Sbjct:   382 GEIVGMVDVLKLTYATLEQINSMSTQDDEGPA--WNKFWLSM------DHESDSMVSGS 432

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0003938 "IMP dehydrogenase activity" evidence=RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

CGD|CAL0003543 orf19.5238 [Candida albicans (taxid:5476)]

 Score = 205 (77.2 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 66/229 (28%), Positives = 104/229 (45%)

Query:    32 FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKP-RGI 90
             + ETL+ +M  P+L   +   +    ++   +V  AT  M E R ++ +V   N+   GI
Sbjct:   206 YFETLKNKMNGPTLEDALDANTVPTYVNVKASVHEATMLMKENRTTAVLVKDTNEQVAGI 265

Query:    91 LTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPXXXXX 150
              TSKD+++RVI+  L      V +VMTP P+ A I  P+ DAL  M DG +L+LP     
Sbjct:   266 FTSKDVVLRVIAAGLDPKKCSVVRVMTPQPDVAPIGLPVQDALRKMFDGHYLNLPVVANE 325

Query:   151 XXXXXXXXXIHITHAAVATV----------GNTA-GSNNEAASTMMQKFWDSAMALSPND 199
                      + +TH  +  +          G+TA  S NE  +    KFW S   L   D
Sbjct:   326 GDIIGVVEVLKLTHITLNQIKQLETSETSNGSTAVDSTNEGPA--WNKFWTS---LDNTD 380

Query:   200 DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMH 248
              + ++    SL   S G+ TA     P  +P    +F   ++ +  + H
Sbjct:   381 GDTESAHSDSLMETSRGSATA-----PDITPSEFHSFNVDIKPSDSVSH 424

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPAC24C9.05c mug70 "conserved protein Mug20" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 151 (58.2 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 42/174 (24%), Positives = 75/174 (43%)

Query:    32 FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL 91
             ++E+L+++     + ++I    +   +    TV  AT+ M    +S+ +V       G+ 
Sbjct:   244 YVESLKKKASGLEIMSLIDSSEEPFLVGTRTTVAEATESMARSGVSAVLVMDNGAVSGVF 303

Query:    92 TSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPXXXXXX 151
             T+ D+++RV++  L    + V +VMTP+P+CA     +  AL  M +GKF +LP      
Sbjct:   304 TAHDVVLRVLAAGLDPYRSSVIRVMTPHPDCALASLRVSTALERMIEGKFSNLPVVDESD 363

Query:   152 XXXXXXXXIHITHAAVATVGNTAG----SNNEAASTMMQKFWDSAMALSPNDDE 201
                      H+  A   T          + N+A       F D    L  N +E
Sbjct:   364 AIIGMLSLFHLATAIEQTPEEEEEVFDQAENDAGIEPSNGFEDQQQQLLGNSNE 417

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|Q5LRC8 SPO2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 104 (41.7 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 30/104 (28%), Positives = 51/104 (49%)

Query:    45 LSTIIPEKSK--VVTISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVI 101
             +  I+  K+   VVT+S   TV  A   + E R+ + VV+ + +  +GIL+ +DI+  + 
Sbjct:     3 VQAILKSKASDGVVTVSAAATVAQAAAILAEKRIGTVVVSDDGETAQGILSERDIVRELA 62

Query:   102 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 145
             +      S  V   MT +      D  + D L  M +G+F H+P
Sbjct:    63 ASGSGCLSEPVSTYMTKDLITCGRDAKVQDVLSQMTEGRFRHMP 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2201 SPO_2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 104 (41.7 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 30/104 (28%), Positives = 51/104 (49%)

Query:    45 LSTIIPEKSK--VVTISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVI 101
             +  I+  K+   VVT+S   TV  A   + E R+ + VV+ + +  +GIL+ +DI+  + 
Sbjct:     3 VQAILKSKASDGVVTVSAAATVAQAAAILAEKRIGTVVVSDDGETAQGILSERDIVRELA 62

Query:   102 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 145
             +      S  V   MT +      D  + D L  M +G+F H+P
Sbjct:    63 ASGSGCLSEPVSTYMTKDLITCGRDAKVQDVLSQMTEGRFRHMP 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EDA6 SO_2856 "Putative nucleotidyltransferase DUF294" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
 Identities = 34/101 (33%), Positives = 52/101 (51%)

Query:    45 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 104
             +ST++   S  +TI    TV  A   M   R+SS +VT  +K  GILT KD+  RV++  
Sbjct:   152 ISTLM--SSSPITIDAHATVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLASG 209

Query:   105 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 145
             L      V + MT +P   + +  I +A+ +M +    HLP
Sbjct:   210 LDGQIA-VHQAMTTSPISISSNALIFEAMLLMSEHNIHHLP 249

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2856 SO_2856 "CBS domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
 Identities = 34/101 (33%), Positives = 52/101 (51%)

Query:    45 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 104
             +ST++   S  +TI    TV  A   M   R+SS +VT  +K  GILT KD+  RV++  
Sbjct:   152 ISTLM--SSSPITIDAHATVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLASG 209

Query:   105 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 145
             L      V + MT +P   + +  I +A+ +M +    HLP
Sbjct:   210 LDGQIA-VHQAMTTSPISISSNALIFEAMLLMSEHNIHHLP 249

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2183740 CBSX3 "AT5G10860" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00033, P = 0.00033
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query:    62 DTVLMATKKMLELRLSSAVVTVENKPR---GILTSKDILMRVISQNLPADSTLVEKVMTP 118
             DTV  A K M +  + + VV    + +   GI+T +D L ++I Q   + ST V  +MT 
Sbjct:    79 DTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 138

Query:   119 NPECATI--DTPIVDALHIMHDGKFLHLP 145
               +  T+  +T ++ A+ +M D +  H+P
Sbjct:   139 ENKLITVTPETKVLRAMQLMTDNRIRHIP 167


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      270       239   0.00092  113 3  11 22  0.44    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  170 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.51u 0.13s 22.64t   Elapsed:  00:00:01
  Total cpu time:  22.51u 0.13s 22.64t   Elapsed:  00:00:01
  Start:  Thu May  9 20:37:55 2013   End:  Thu May  9 20:37:56 2013

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017958001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (541 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	8e-52
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	1e-23
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	3e-23
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-22
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-21
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	6e-17
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-15
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	4e-15
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	5e-13
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	8e-13
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	9e-13
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	1e-12
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	1e-12
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	3e-11
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	3e-11
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	3e-11
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	2e-10
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	6e-10
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	6e-10
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-09
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-09
pfam00571	57	pfam00571, CBS, CBS domain	2e-09
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	3e-09
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	6e-09
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	7e-09
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	7e-09
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	8e-09
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	1e-08
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	1e-08
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-08
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	3e-08
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	3e-08
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	5e-08
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	6e-08
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	9e-08
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	2e-07
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	8e-07
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	1e-06
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-06
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	1e-06
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	1e-06
pfam00571	57	pfam00571, CBS, CBS domain	3e-06
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	4e-06
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	5e-06
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	8e-06
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	8e-06
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	1e-05
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	2e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	2e-05
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	4e-05
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	7e-05
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	1e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	1e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	1e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-04
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	4e-04
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	5e-04
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	6e-04
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	6e-04
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	7e-04
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	8e-04
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	0.001
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	0.002
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	0.002
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.003
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	0.003
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	0.004

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  164 bits (418), Expect = 8e-52
 Identities = 65/113 (57%), Positives = 82/113 (72%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
           +K  T+SPT TV  A K M E R+S  +V   NK  GI TSKDI +RV++Q L  +STLV
Sbjct: 1   TKPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLV 60

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
           E+VMTPNP CAT DTP+++ALH+M  GKF HLPVVD+ G VV ++DV  +THA
Sbjct: 61  ERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 92.2 bits (230), Expect = 1e-23
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
             VT SP  T+  A + M E R+SS +V  + +  GI+T +D+  RV+++ L  D T V 
Sbjct: 2   PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDPD-TPVS 60

Query: 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           +VMT  P     D  + +AL +M +    HLPVVD DG +V V+
Sbjct: 61  EVMTAPPITIPPDATVFEALLLMLERGIHHLPVVD-DGRLVGVI 103

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 91.0 bits (227), Expect = 3e-23
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 112
            V+T+ P  TV  A K M E  + + VV     +  GI + +DI+ +V  +   A  T V
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPV 61

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
            ++MT N    T D  + +A+ +M + +F HLPVVD  G +V +V
Sbjct: 62  SEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD-GGKLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 89.1 bits (222), Expect = 1e-22
 Identities = 36/105 (34%), Positives = 58/105 (55%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
             VVT+SP DT+  A + M E  + +  V   ++  GI+T +DI++R +++    D+T V
Sbjct: 1   RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTV 60

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
             VMT      T D  + +A  +M + +   LPVVD DG +V +V
Sbjct: 61  GDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.9 bits (213), Expect = 3e-21
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 111
             VVT+SP DTV  A + MLE  +S   V  ++ +  GI+T +D+ +R +++        
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDL-LRALAEGGLDPLVT 59

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           V  VMT +    + DT + +A  +M +     LPVVD +G +V +V
Sbjct: 60  VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 74.4 bits (183), Expect = 6e-17
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 111
              V+T+ P  +V  A   M E  +S+  V  + K  GI+T +DIL  + +         
Sbjct: 6   TKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGG--KRLLP 63

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDG-KFLHLPVVDRDGDVVDVVDVIHIT 163
           V++VMT        DTP+ +AL +M +  K   LPVVD DG    +V +I ++
Sbjct: 64  VKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGG--KLVGIITLS 114

Length = 117

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 69.9 bits (172), Expect = 2e-15
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 114
           ++T  P  ++  A  +M E R+SS VV  + +P GI+T +DIL R+++      + + E 
Sbjct: 3   ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPDLQTPVGE- 60

Query: 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 161
           VM+        DT + DA  +M +    HL VVD DG+++ ++   D++ 
Sbjct: 61  VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---------Q 103
             V+T+SP D V  A + ML+  +S   V    K  GI+T KDI   + S         Q
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQ 60

Query: 104 NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                +  V  +MT        DT + D   +M +     LPVVD DG +V +V
Sbjct: 61  ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-DGKLVGIV 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 63.8 bits (156), Expect = 5e-13
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL 111
             VVT+ P  ++  A K M E  + S VV   + +P GI+T +DI+ R ++  +    T 
Sbjct: 1   RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGID-LDTP 58

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           V ++MT +      D P+ +A  +M      H  VVD+ G++V V+
Sbjct: 59  VSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 63.5 bits (155), Expect = 8e-13
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 24/130 (18%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL- 111
            V+T+   DT+    + +L  ++S   VV  E +  GI++  D++ ++         TL 
Sbjct: 2   DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLL 61

Query: 112 ------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 153
                             VE++MT        DT I D   IM       LPVVD DG +
Sbjct: 62  YSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGKL 120

Query: 154 VDVV---DVI 160
           V ++   D+I
Sbjct: 121 VGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 63.0 bits (154), Expect = 9e-13
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ---------N 104
             +T++P  +++ A K M E  +    V    K  GI+T +D+ +   S+          
Sbjct: 2   NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELY 61

Query: 105 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                  V  +MT +P   + D  + +A  +M + K   LPVVD  G +V ++
Sbjct: 62  YLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGII 114

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 62.9 bits (154), Expect = 1e-12
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 56  VTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTLVEK 114
           + +SP  ++L A +K+ +  L   +V  EN +  G +T  DI  R + + L  D   V +
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDI-RRALLKGLSLDDP-VSE 62

Query: 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV 156
           VM  NP  A + +   + L +M +    HLP++D +G VV +
Sbjct: 63  VMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGL 104

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 114
           V+T+ P  TV  A   M E  +   +V    KP GI+T +D++ +V+S+NL      V +
Sbjct: 3   VITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGE 62

Query: 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 163
           VM+        +  + +A  +M       LPVVD D ++V +V    I 
Sbjct: 63  VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVD-DDELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV 112
             VT+SP  ++  A +KM +  +SS VV        GI+T KD+  RVI+         V
Sbjct: 158 PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQK-V 216

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 162
            +VMT           + +A+ +M   +  HLPV + DG  + ++ +  I
Sbjct: 217 SEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDI 265

Length = 610

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPAD--- 108
           S VVT+S  D++  A + M E R+    VV  + K  G+LT +D+L   +S         
Sbjct: 1   SPVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEES 60

Query: 109 -----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                   V +VM  +    T DTP+ +A  IM + K   LPVVD  G +V ++
Sbjct: 61  LTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 62  DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 121
           D +L  ++K L +   +AVV  + +  GI T  D L R + + L   +  V  VMT NP+
Sbjct: 15  DALLEMSRKGLGM---TAVVDEDGRLVGIFTDGD-LRRALEKGLDILTLPVADVMTRNPK 70

Query: 122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 161
               D    +AL +M + K   LPVVD +G  V V+  IH
Sbjct: 71  TIDPDALAAEALELMEENKITALPVVDDNGRPVGVLH-IH 109

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
            +T+SP  TV  A + M E  +S   VV  + K  GI+T++D  +R  +         V 
Sbjct: 4   PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRD--LRFETD----LDKPVS 57

Query: 114 KVMTPNPECAT-IDTPIVDALHIMHDGKFLHLPVVDRDG 151
           +VMTP     T   T + +AL ++H+ K   LPVVD +G
Sbjct: 58  EVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG 96

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL------PA 107
           +VVT+   D +    +   + +    +V  +N+  G+++ +D L + IS  L        
Sbjct: 2   RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEK 60

Query: 108 D----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           D    +    ++MT +P   + DTP+ +A  ++ +     LPVVD +G ++ ++
Sbjct: 61  DLATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
             + +  + ++  A + M E    + +V   +   GI+T  D+L  V+   LP+ ST V 
Sbjct: 2   PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPS-STPVG 60

Query: 114 KVMTPNPECATIDTPIVDALHIM--HDGKFLHLPVVDRDGDVVDVVD 158
           ++ T        D  + +AL +M  H    +H  VV   G+VV V++
Sbjct: 61  EIATFPLITVDPDDFLFNALLLMTRHR---IHRVVVREGGEVVGVLE 104

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRV-------ISQNLP 106
           VVT++P  ++  A   +   R+ +  VV  + +  GI+T +D+L          +   L 
Sbjct: 4   VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLR 63

Query: 107 ADST--LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                  V  +M+P       DTPI + + ++ DG   H+PVVD D  +V +V
Sbjct: 64  GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIV 116

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 23/127 (18%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 111
           + VVT+SP  +V  A + ML+  +S   VV  + +  GI++  D+L R         +  
Sbjct: 2   TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARW 61

Query: 112 ---------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 150
                                V  VMT        DTP+ +   +M + +   +PVV R 
Sbjct: 62  LDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVV-RG 120

Query: 151 GDVVDVV 157
           G +V +V
Sbjct: 121 GRLVGIV 127

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
           V+ +MTP+      DT + +AL +M +     LPVVD DG +V +V +  +  A
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL---------MRVIS 102
             VVTI+PT T+  A + M E ++    VV  E +  GI+T +D+          +    
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHE 60

Query: 103 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV--VDVVDVI 160
             L      V+++MT +         + +A  +M + +   LPVV+    V  +   D++
Sbjct: 61  LYLLLKMP-VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119

Query: 161 HI 162
             
Sbjct: 120 RT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 57  TISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 116
           T++P   +  A   M E  L S VV    +  G+LT +++L  +         T V  +M
Sbjct: 5   TVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIM 64

Query: 117 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
            P P  A+ D  I +   +M +    +LPV+D  G ++ V+
Sbjct: 65  NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTL 111
             VVTIS   ++  A K M+E  ++   VV  + +  GI+TS D     IS+ +  D   
Sbjct: 2   RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWD-----ISKAVARDKKS 56

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 163
           VE +MT N   AT D PI  A   M       LPVVD +  V+ ++    I+
Sbjct: 57  VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 111
             K++T+ P DT+  A K   E  +  A V  ++K  GI+T  DI   + + NL A    
Sbjct: 179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAK--- 235

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           V   M  N      D  I DA+ +M+      L V D +G  V ++
Sbjct: 236 VSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGII 281

Length = 294

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 20/112 (17%)

Query: 56  VTISPTDTVLMATKKMLELR----LSSAVVTVENKPR----GILTSKDILMRVISQNLPA 107
             +SP  TV      +LE++     SS ++TV+ K      GI+TS+DI        +  
Sbjct: 107 YVLSPNHTV----ADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID------FVKD 156

Query: 108 DSTLVEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 157
            ST V +VMTP  +    +TPI   +A  ++ + +   LP+V+ +G++V +V
Sbjct: 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV 208

Length = 495

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 112
             VTI+P  T+  A K M + ++ S +V   +NK  GI++ + +      +    ++  +
Sbjct: 3   NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESL------EQAYKEAKSL 56

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           E +M  +      D  + D L ++      ++PVVD DG +V ++
Sbjct: 57  EDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLI 101

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 57  TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVISQNLPADSTLVEKV 115
           T++P   V  A   M +   SS V+ VE     GI T +DI+ R+ +         + +V
Sbjct: 5   TVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEV 63

Query: 116 MTPNPECATI----DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           MT      T+       I  AL +    +  HLPV+D  G ++ +V
Sbjct: 64  MTQP--VVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLV 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
             VVT+    TV      M   R     V  + +  GI+T  DI  R +       + LV
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADI--RRVPAEGREATVLV 58

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
             VMT +P  A+ D  + DAL  M +     LPVVD  G +V +V
Sbjct: 59  GDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIV 103

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMR--------VISQN 104
           + VT +P D V      MLE   +   VV    +  GI+T +DI+             + 
Sbjct: 2   EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRT 61

Query: 105 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 158
               S  VEK+M+      T D  I  A+ +M +     LPVV+    +V +VD
Sbjct: 62  QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVD 115

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-----GILTSKDILMRVISQNLPAD 108
            VVTI    TV  A + M E  +SS VV    K R     GI+T +DIL +V+++    D
Sbjct: 2   NVVTIDGLATVAEALQLMKEHGVSSLVV---EKRRESDAYGIVTMRDILKKVVAEGRDPD 58

Query: 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
              V ++MT      + D  I     +M        PVV+ + +++ ++ +  I  A
Sbjct: 59  RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-NNELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPAD 108
           S  VTISP  TV    + M    +S   V  +        GI+T +DI      + +   
Sbjct: 88  SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDI------RFVKDK 141

Query: 109 STLVEKVMTP-NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
              V +VMT            + +AL ++H+ +   LPVVD++G++V ++
Sbjct: 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLI 191

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 16/103 (15%)

Query: 55  VVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
            VT++P  T+  A   M    +S   VV    K  GI+T++D  +R  +      S  V 
Sbjct: 97  PVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRD--VRFETD----LSQPVS 150

Query: 114 KVMTPN-----PECATIDTPIVDALHIMHDGKFLHLPVVDRDG 151
           +VMT       PE  T++    +AL ++H+ +   LPVVD +G
Sbjct: 151 EVMTKERLVTVPEGTTLE----EALELLHEHRIEKLPVVDDNG 189

Length = 486

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
            V+T+SP +TV    K + E       V    K  GI++++D+L +            VE
Sbjct: 3   DVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK-------DPDETVE 55

Query: 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 160
           ++M+ +   A  +  I+DA  +M       LPVVD + ++V ++   DVI
Sbjct: 56  EIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL---MRVISQNLPADS- 109
           VVT+S   ++  A K + E R+ +  V  E+ +  GI+T +D+L        Q L     
Sbjct: 255 VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRP 314

Query: 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 161
             V+ +MT        DTP V+ +  + D     LPV+D  G +V +V   D+I 
Sbjct: 315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIA 369

Length = 382

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 46.3 bits (111), Expect = 8e-07
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 57  TISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDILMRVISQNLPADST 110
            +    TV  A + +              VV  E +  G+++ +D+L+           T
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------DPDT 53

Query: 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVI 160
            V  +M  +    + D    +   +      L LPVVD +G +V      DV+DVI
Sbjct: 54  PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 56  VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADST-LVE 113
           VT +P  +V  A +K+L+ ++S   VV       G L+ +D L +++  +   D    V 
Sbjct: 4   VTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVR 63

Query: 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
            +MT      + D  IVD   +M   K    PVVD DG +V  +
Sbjct: 64  DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-DGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVT--VENKPRGILTSKDILMRVISQN------- 104
            VVT+ PT  ++ A K M+        V      K  GI+T+ DIL  +           
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKT 61

Query: 105 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
              L A +  V  +MT N    T D  I DA  +M + +   LPVVD DG +V +V
Sbjct: 62  GNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIV 117

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV---VDVIHI 162
            A  DTP++D L ++ + +   LP+VD +G VVDV    DVI++
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 114
           VV+++P DTV  A ++M E  +S   V  + +  G +   D+L  +I       S  V +
Sbjct: 3   VVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK-AKFSLPVRE 61

Query: 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 160
           VM         D PI +   ++  G      VVD  G  V ++   D++
Sbjct: 62  VMGEPLPTVDPDAPIEELSELLDRG--NVAVVVDEGGKFVGIITRADLL 108

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVIS 102
             VVT+ P  ++  A + M E  +S   V  E+ K  GI+T +D+L  ++ 
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
               ++ TDTV    +   E   S   VV  +NK  GI+TSKD+  +          T +
Sbjct: 3   DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK-------DPDTTI 55

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 160
           EKVMT NP      T +    H+M       LPVVD +  ++ ++   DV+
Sbjct: 56  EKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
           +  VT+SP  TV  A +      +S   VT + K  G L        +           V
Sbjct: 90  TDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDI----DFLSKVSV 145

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
              MT +   A     + +A  I+H+ K   LP+VD DG++V ++
Sbjct: 146 VMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLI 190

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 57  TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDI---LMRVISQNLPADSTLV 112
            I+PT +   A  +M E RL SA+V  EN    G+ T  D+   L+   S         V
Sbjct: 168 LIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSE-----V 222

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
              MT  P+   +D  +++AL  +   K   L VVD    V+ V+
Sbjct: 223 RDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 56  VTISPTDTV--LMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADS 109
             +SP  TV  ++  K+  +   S   VT + K      GI+TS+DI        L    
Sbjct: 5   SVLSPDHTVADVLEIKE--KKGFSGIPVTEDGKSGGKLLGIVTSRDI------DFLTDSE 56

Query: 110 TLVEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 157
           T + +VMTP        T I   +A  I+ + K   LP+V+ DG++V +V
Sbjct: 57  TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALV 106

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
            ++T++P  T+  A +      +  A V  + K  GI+T  DI    I++ L      V+
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AIARGLE--LAKVK 58

Query: 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 162
            VMT +      D  + DA+ +M+      L V D +G  V ++   D++  
Sbjct: 59  DVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDIL 97
             +T+SP   V  A+K +LE  +S   VV    +  GI+T KD+L
Sbjct: 76  DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 35/143 (24%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN------LP 106
              +T +  DT+  A + + E ++S A V    K  GI++  DIL  +++ +      LP
Sbjct: 1   KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLP 60

Query: 107 -------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 141
                                    A    V  +MT      + D  I DA  +M   K 
Sbjct: 61  SPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKI 120

Query: 142 LHLPVVDRDGDVVDVV---DVIH 161
             LPVV+ DG +V +V   D+I 
Sbjct: 121 KRLPVVE-DGRLVGIVTRGDIIE 142

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 38  ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSK 94
           ERM    +   +   S V+T SP D+V  A  +MLE   SS VV     + K  GILT K
Sbjct: 66  ERMLDLPVYDAM--SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKK 123

Query: 95  DILMR 99
           D+L  
Sbjct: 124 DVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR--GILTSKDILMRVISQNLPADST 110
            K   +     +  A  +M      +  V V++K R  GI+T  D+L   +      D  
Sbjct: 1   MKPSCVVLNTDIARAVAEMYTSGSRALPV-VDDKKRLVGIITRYDVLSYALESEELKD-A 58

Query: 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
            V +VM         +  I  A  +M +     LPV+D  G V  +V
Sbjct: 59  KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
            VVTI     +      +     ++  VV  + +  GI++  DI   ++      D  + 
Sbjct: 2   DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVA 60

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 152
             +MT  P     +  + DAL    D  +  LPVVD D  
Sbjct: 61  SDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG 100

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 55 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 97
          VVT+SP  T+  A + + E  +    VV  E +  GI+T +DI+
Sbjct: 2  VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
           VV ++   T     + + E ++S   VV    +  GI+T KD+L          +   + 
Sbjct: 3   VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN-------PEEEQLA 55

Query: 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
            +MT +P   + D  + +A  +M +     +PVVD DG +V +V V  I  A
Sbjct: 56  LLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSN 177
            +    + D  + +AL +M +     LPVVD DG +V +V    +  A      +   + 
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 178 NEAAST 183
            +  + 
Sbjct: 61  GDVMTR 66

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 162
           +    + DT + +AL ++ +     LPVVD +G +V +V   D+I  
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKA 47

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 97
           V+TI+P D++  A + MLE R+    VV  + K  GI+T +D+L
Sbjct: 80  VITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 97
             +VVTISP  ++L A + M E ++    V  E K  GI+T   I 
Sbjct: 58  TREVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
             +TI P D+V  A + M + R+    V  + K  GI+TS+D + R     L AD+ +  
Sbjct: 2   DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRD-VRRAHPNRLVADA-MTR 59

Query: 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 150
           +V+T +PE +     +++A  +M + K   LPV+   
Sbjct: 60  EVVTISPEAS-----LLEAKRLMEEKKIERLPVLRER 91

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNL----PA 107
            +V  +  T+T+  A   + +   S+  V+  E K  G ++  DIL ++           
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERL 60

Query: 108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 151
               V  VM  +      D  I + LH++ D  F  LPVVD DG
Sbjct: 61  VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQPF--LPVVDDDG 102

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 80  VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 139
           VV  + K  G+++ +D+L             L++ +M  +      D    +   +    
Sbjct: 173 VVDEKGKLLGVVSLRDLLTA-------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKY 225

Query: 140 KFLHLPVVDRDG------DVVDVVDVI 160
             L +PVVD D        + D++DVI
Sbjct: 226 DLLAVPVVDEDNRLIGIITIDDIIDVI 252

Length = 451

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 150
           V+ +MT +      DT + DAL +M +     +PVVD  
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG 39

Length = 117

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 10  AIAAAVEGVEKHWGTSISGPNTFIET---LRERMFRPSLSTIIPEK----SKVVTISPTD 62
           A     EGV        SGP   I T   LR R+     S          S V+++   D
Sbjct: 172 ARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVISVDRGD 231

Query: 63  TVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 105
            +  A   ML  R+    VT + +P GILT  DIL R+ SQN 
Sbjct: 232 FLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL-RLFSQNS 273

Length = 610

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 56  VTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADS-TLV 112
           VT+SP DTV  A   +L  R   AVV V  E +P G++T  D            D  T V
Sbjct: 100 VTLSPDDTVGDALA-LLPKRAHGAVVVVDEEGRPVGVVTEADCAGV--------DRFTQV 150

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
             VM+ +       T   +A  ++   +    PVVD DG +V V+
Sbjct: 151 RDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVL 195

Length = 479

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 56  VTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 114
             +  TDTV      + +   S   VV    K  G++T +D+L +         ST +EK
Sbjct: 201 SYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK-------KPSTTIEK 253

Query: 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           VMT NP      T +     +M       LPVVD +  ++ ++
Sbjct: 254 VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGII 296

Length = 432

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDIL 97
             VVT+SP  ++  A + MLE  +    VV  E +  GI+T  DIL
Sbjct: 66  RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 117 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT-HAAVATVG 171
           + +    T DT + +A  ++   +   LPVVD D  +V +V    +  HA      
Sbjct: 1   SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR 56

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 163
           V  +    P   + DT + +A ++M +     LPVVD +G ++ +V +  + 
Sbjct: 70  VRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLA 121

Length = 546

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.87
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.86
COG2524	294	Predicted transcriptional regulator, contains C-te	99.84
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.83
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.82
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.81
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.81
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.79
COG3620	187	Predicted transcriptional regulator with C-termina	99.79
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.78
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.76
PRK11573	413	hypothetical protein; Provisional	99.75
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.74
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.73
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.72
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.72
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.72
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.72
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.71
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.71
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.71
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.7
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.7
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.69
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.69
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.69
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.69
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.69
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.69
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.68
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.68
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.68
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.68
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.67
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.67
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.67
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.67
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.67
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.67
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.67
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.67
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.66
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.66
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.66
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.66
COG2905	610	Predicted signal-transduction protein containing c	99.66
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.66
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.66
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.66
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.66
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.66
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.65
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.65
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.65
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.65
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.65
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.65
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.64
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.64
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.64
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.64
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.64
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.64
COG4109	432	Predicted transcriptional regulator containing CBS	99.64
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.63
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.63
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.63
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.63
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.62
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.62
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.62
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.62
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.62
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.6
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.6
COG0517	117	FOG: CBS domain [General function prediction only]	99.59
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.59
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.58
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.58
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.58
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.58
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.57
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.56
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.55
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.55
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.53
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.49
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.48
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.47
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.43
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.43
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.41
COG2524	294	Predicted transcriptional regulator, contains C-te	99.37
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.34
COG3620	187	Predicted transcriptional regulator with C-termina	99.3
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.25
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.24
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.21
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.19
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.18
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.18
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.16
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.12
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.11
PRK11573	413	hypothetical protein; Provisional	99.04
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.01
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.01
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.01
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.01
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.98
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.96
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.94
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.92
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.92
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.91
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.9
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.9
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.9
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.89
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.88
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.88
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.87
COG4109	432	Predicted transcriptional regulator containing CBS	98.87
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.87
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.85
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.85
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.85
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.85
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.85
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.83
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.82
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.82
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.82
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.82
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.81
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.81
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.81
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.79
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.79
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.78
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.78
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.76
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.76
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.76
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.76
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.76
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.76
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.75
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.74
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.74
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.72
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.72
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.72
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.71
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.71
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.7
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.7
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.69
COG2905	610	Predicted signal-transduction protein containing c	98.68
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.68
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.68
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.68
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.68
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.67
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.67
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.67
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.66
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.66
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.66
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.65
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.64
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.64
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.63
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.61
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.6
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.58
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.58
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.56
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.54
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.53
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.52
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.52
COG0517	117	FOG: CBS domain [General function prediction only]	98.49
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.49
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.49
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.48
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.44
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.44
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.36
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.36
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.31
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.3
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.24
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.24
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.22
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.19
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.09
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.83
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.33
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.23
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.08
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.03
KOG2118	498	consensus Predicted membrane protein, contains two	96.85
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.77
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.96
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	95.32
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	94.9
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.47
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.38
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	89.18
COG0516	170	GuaB IMP dehydrogenase/GMP reductase [Nucleotide t	84.6
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	80.39

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.87  E-value=1.6e-21  Score=178.45  Aligned_cols=151  Identities=24%  Similarity=0.302  Sum_probs=139.2

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAV   80 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~   80 (270)
                      ||+++|.+||+++|+.|     |++++|+|.-++...+.+.+.++.++|.  ++++++.+++|+.+++++|.+++.+.+|
T Consensus        51 mdtvTe~~MAi~~A~~G-----GigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~v  123 (475)
T TIGR01303        51 MTAVAGRRMAETVARRG-----GIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAV  123 (475)
T ss_pred             chhhHHHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEE
Confidence            89999999999999999     9999999977888888888889999998  6889999999999999999999999999


Q ss_pred             EEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHH
Q 024256           81 VTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI  160 (270)
Q Consensus        81 Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~  160 (270)
                      |+++++++|+||.+|+. .     ... ..++.++|+++++++++++++.+|+++|.+++.+.+||+|++|+++|+||.+
T Consensus       124 VvD~gklvGIVT~rDL~-~-----~~~-~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~  196 (475)
T TIGR01303       124 VILEDRPVGLVTDSDLL-G-----VDR-FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRT  196 (475)
T ss_pred             EEECCEEEEEEEHHHhh-c-----CCC-CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence            99988999999999984 2     222 3579999999999999999999999999999999999999889999999999


Q ss_pred             HHHHH
Q 024256          161 HITHA  165 (270)
Q Consensus       161 dll~~  165 (270)
                      ||++.
T Consensus       197 DLl~~  201 (475)
T TIGR01303       197 GALRA  201 (475)
T ss_pred             HHHHH
Confidence            99986

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.86  E-value=7.4e-21  Score=174.33  Aligned_cols=151  Identities=25%  Similarity=0.272  Sum_probs=139.3

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAV   80 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~   80 (270)
                      |+++++.+|++++++.|     |++++|.+...+...+.+.+.+++++|.  ++++++++++|+.++++.|.+++++++|
T Consensus        52 Mdtvt~~~MAiaLAr~G-----GiGvih~nl~~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~  124 (479)
T PRK07807         52 MTAVAGRRMAETVARRG-----GLVVLPQDIPIDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVV  124 (479)
T ss_pred             CcchhHHHHHHHHHHCC-----CceEeeCCCCHHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEE
Confidence            89999999999999999     9999999977888878788888999998  7899999999999999999999999999


Q ss_pred             EEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeH
Q 024256           81 VTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV  159 (270)
Q Consensus        81 Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~  159 (270)
                      |++ +++++|+||.+|+. .     ... ..++.++|+++++++++++++.+|++.|.+++.+.+||+|++|+++|+||.
T Consensus       125 VVD~~gklvGIVT~rDL~-~-----~~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~  197 (479)
T PRK07807        125 VVDEEGRPVGVVTEADCA-G-----VDR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTR  197 (479)
T ss_pred             EECCCCeEEEEEeHHHHh-c-----Ccc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEH
Confidence            998 88999999999994 2     122 357999999999999999999999999999999999999988999999999


Q ss_pred             HHHHHH
Q 024256          160 IHITHA  165 (270)
Q Consensus       160 ~dll~~  165 (270)
                      +||++.
T Consensus       198 ~DIl~~  203 (479)
T PRK07807        198 TGALRA  203 (479)
T ss_pred             HHHHHH
Confidence            999986

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.84  E-value=2.1e-20  Score=153.08  Aligned_cols=121  Identities=26%  Similarity=0.333  Sum_probs=113.9

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      .+.+|.++|+  +++.++.+++|+.+|.++|.++++++.||+|+++++|++|..|+. .+++++.  .+.+|+++|.+++
T Consensus       170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~--~~~kV~~~M~k~v  244 (294)
T COG2524         170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGN--LDAKVSDYMRKNV  244 (294)
T ss_pred             Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCC--ccccHHHHhccCC
Confidence            5778999999  789999999999999999999999999999988999999999998 8888773  3579999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      +++++|+.+.||+++|..++++++.|+|.+|+++|+||++|+|..+
T Consensus       245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i  290 (294)
T COG2524         245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI  290 (294)
T ss_pred             ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence            9999999999999999999999999999999999999999999863

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.83  E-value=6.6e-20  Score=169.20  Aligned_cols=152  Identities=27%  Similarity=0.345  Sum_probs=134.2

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCC-CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRP-SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA   79 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i   79 (270)
                      |+.+++.+||+++|+.|     |+|++|.+..++...+...+. +.++.|.  .+++++++++|+.+++++|.+++++.+
T Consensus        58 M~~vt~~~ma~a~a~~G-----glGvi~~~~~~e~~~~~v~kvk~~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~v  130 (495)
T PTZ00314         58 MDTVTEHKMAIAMALMG-----GIGVIHNNCSIEEQVEEVRKVKRFENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSI  130 (495)
T ss_pred             ccccccHHHHHHHHHCC-----CeEEecCCCCHHHHHHHHhhccccccccc--cCCeecCCCCCHHHHHHHHHHcCCcEE
Confidence            88999999999999999     999999986666666655343 4778888  688999999999999999999999999


Q ss_pred             EEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcE
Q 024256           80 VVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV  153 (270)
Q Consensus        80 ~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~  153 (270)
                      ||+++    ++++|+++.+|+.  ...    ....+++++|++  ++++++++.++.+++++|.+++.+.+||+|+++++
T Consensus       131 pVvd~~~~~gkLvGIVt~~DL~--~~~----~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~l  204 (495)
T PTZ00314        131 LITVDGKVGGKLLGIVTSRDID--FVK----DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGEL  204 (495)
T ss_pred             EEEeCCccCCeEEEEEEHHHHh--hcc----cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence            99984    7999999999994  221    224689999997  88999999999999999999999999999999999


Q ss_pred             EEEEeHHHHHHH
Q 024256          154 VDVVDVIHITHA  165 (270)
Q Consensus       154 ~Givt~~dll~~  165 (270)
                      +|+||.+||++.
T Consensus       205 iGIIT~~DIl~~  216 (495)
T PTZ00314        205 VALVSRSDLKKN  216 (495)
T ss_pred             EEEEEehHhhhc
Confidence            999999999986

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.82  E-value=3e-19  Score=154.88  Aligned_cols=206  Identities=16%  Similarity=0.203  Sum_probs=152.3

Q ss_pred             ChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCC
Q 024256           28 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNL  105 (270)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~  105 (270)
                      .....+..+.+. ...+|+++|+|+.+++++++++|+.++++.+.+++++++||++ + ++++|+++.+|++ .......
T Consensus        53 ~e~~~i~~vl~l-~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll-~~~~~~~  130 (292)
T PRK15094         53 DTRDMLEGVMDI-ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDA  130 (292)
T ss_pred             HHHHHHHHHhcc-CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHH-hHhhccC
Confidence            344777777664 5889999999877899999999999999999999999999998 4 7899999999997 5443221


Q ss_pred             CCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHH------
Q 024256          106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE------  179 (270)
Q Consensus       106 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~------  179 (270)
                      .  ...+.++|.+ ++++++++++.++++.|.+++.+.+||+|+.|.++|+||..||++.++..+.+..+...+      
T Consensus       131 ~--~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~  207 (292)
T PRK15094        131 E--AFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL  207 (292)
T ss_pred             C--cCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEe
Confidence            1  2458899965 458999999999999999999999999999999999999999999987665443321110      


Q ss_pred             -------HHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCe
Q 024256          180 -------AASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM  247 (270)
Q Consensus       180 -------~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l  247 (270)
                             .+.....++.+.+-.-. +...+.|..+++-...+..|..++...+.        .+.|+|.+.+|+-
T Consensus       208 ~~~~~~v~G~~~l~dl~~~l~~~l-~~~~~~Tl~G~i~~~l~~iP~~Gd~i~~~--------~~~f~V~~~~~~r  273 (292)
T PRK15094        208 SRHTWTVRALASIEDFNEAFGTHF-SDEEVDTIGGLVMQAFGHLPARGETIDID--------GYQFKVAMADSRR  273 (292)
T ss_pred             CCCeEEEEeccCHHHHHHHhCCCC-CCCCCccHHHHHHHHhCcCCCCCCEEEEC--------CEEEEEEEccCCe
Confidence                   11112223333332211 22345788888877777777776654443        3458898876554

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.81  E-value=7.2e-19  Score=159.37  Aligned_cols=205  Identities=13%  Similarity=0.159  Sum_probs=149.8

Q ss_pred             ChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCC
Q 024256           28 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNL  105 (270)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~  105 (270)
                      .+.++++++.+. ...+++++|+|+.++++++.++++.++++.+.+++++++||++  .++++|+++.+|++ .....  
T Consensus       177 ~E~~~i~~vl~l-~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll-~~~~~--  252 (408)
T TIGR03520       177 EEQKILQGIVSF-GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLL-PHLNK--  252 (408)
T ss_pred             HHHHHHHHHhcc-CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHH-hHhcc--
Confidence            345777777655 4779999999988999999999999999999999999999998  36899999999998 54432  


Q ss_pred             CCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHH------
Q 024256          106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE------  179 (270)
Q Consensus       106 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~------  179 (270)
                        ...++.++|+ ++.++++++++.++++.|++++.+.++|+|+.|..+|+||..||++.++..+.++.+...+      
T Consensus       253 --~~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~  329 (408)
T TIGR03520       253 --KNFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKID  329 (408)
T ss_pred             --CCCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeC
Confidence              1246888985 5789999999999999999999999999999999999999999999987655443221110      


Q ss_pred             ------HHHHHHHHHHHHhhccC----CCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCe
Q 024256          180 ------AASTMMQKFWDSAMALS----PNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM  247 (270)
Q Consensus       180 ------~~~~~~~~~~~~~~~~~----~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l  247 (270)
                            .......+..+.+-.-.    ..++.+.|...++-...+..|+.++...+..        +.|+|.+.+|+-
T Consensus       330 ~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~--------~~f~V~~~~~~r  399 (408)
T TIGR03520       330 DNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFEN--------FEFTIEAMDKKR  399 (408)
T ss_pred             CCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECC--------EEEEEEEccCCe
Confidence                  01112222222221110    0112346777777666677776666544333        348888876554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.81  E-value=3e-19  Score=164.62  Aligned_cols=153  Identities=26%  Similarity=0.255  Sum_probs=127.4

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCCCccccccCC-CceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSA   79 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~-~~~~~v~~~~tv~~a~~~m~~~~~~~i   79 (270)
                      |+.|++.++|+++++.|     |++++|.+-.++...+..  .+|+++|... .+++++++++|+.+|++.|.+++++.+
T Consensus        59 mdtvtgdalAiala~~g-----G~g~Ih~n~sie~qa~lV--~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~v  131 (502)
T PRK07107         59 MQSVSDDNMAIALAREG-----GLSFIFGSQSIESEAAMV--RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTV  131 (502)
T ss_pred             HHHHhhHHHHHHHHHcC-----CCeEeeCCCCHHHHHHHH--HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeE
Confidence            67889999999999999     999999774444433221  2455555421 245799999999999999999999999


Q ss_pred             EEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcE
Q 024256           80 VVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV  153 (270)
Q Consensus        80 ~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~  153 (270)
                      ||+++    ++++|+||.+|+. +. .   ...+.+++++|++  +++++++++++.+|+++|.+++++.+||+|++|++
T Consensus       132 pVVD~~~~~gkLvGIVT~~DLr-~~-~---~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~L  206 (502)
T PRK07107        132 AVTEDGTAHGKLLGIVTSRDYR-IS-R---MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNL  206 (502)
T ss_pred             EEEeCCCcCCEEEEEEEcHHhh-cc-c---cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence            99984    7999999999994 32 1   1235689999996  78899999999999999999999999999988999


Q ss_pred             EEEEeHHHHHHH
Q 024256          154 VDVVDVIHITHA  165 (270)
Q Consensus       154 ~Givt~~dll~~  165 (270)
                      +|+||.+|+++.
T Consensus       207 vGIIT~~Dilk~  218 (502)
T PRK07107        207 VYLVFRKDYDSH  218 (502)
T ss_pred             EEEEEhHHHHhc
Confidence            999999999986

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.79  E-value=2.6e-18  Score=157.61  Aligned_cols=152  Identities=31%  Similarity=0.357  Sum_probs=130.9

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh-CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM-FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA   79 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i   79 (270)
                      |+.+++.++++++++.|     |+|++|+|..++.-.+.+ .-.+.++.|.  ++++++++++|+.+++++|.+++++.+
T Consensus        42 mdtvTe~ema~~ma~~g-----g~GvI~~n~~~e~q~~~V~~Vk~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~l  114 (450)
T TIGR01302        42 MDTVTESRMAIAMAREG-----GIGVIHRNMSIEEQAEQVKRVKRAENGII--SDPVTISPETTVADVLELMERKGISGI  114 (450)
T ss_pred             CCccCHHHHHHHHHhcC-----CCceeecCCCHHHHHHHHhhhccccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEE
Confidence            88899999999999999     999999863343332222 2336788888  689999999999999999999999999


Q ss_pred             EEEe-C---CEEEEEeeHHHHHHHHHhcCCCCCccchhhccC-CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEE
Q 024256           80 VVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV  154 (270)
Q Consensus        80 ~Vv~-~---~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~  154 (270)
                      ||++ +   ++++|+++.+|++ ...    . ...++.++|+ .+++++++++++.++++.|.+++.+.+||+|++|+++
T Consensus       115 pVvd~~~~~~~lvGIVt~rDL~-~~~----~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lv  188 (450)
T TIGR01302       115 PVVEDGDMTGKLVGIITKRDIR-FVK----D-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELV  188 (450)
T ss_pred             EEEeCCCCCCeEEEEEEHHHHh-hhh----c-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEE
Confidence            9999 5   6999999999996 321    1 2468999998 4899999999999999999999999999999999999


Q ss_pred             EEEeHHHHHHH
Q 024256          155 DVVDVIHITHA  165 (270)
Q Consensus       155 Givt~~dll~~  165 (270)
                      |+||.+||++.
T Consensus       189 GiVT~~DIl~~  199 (450)
T TIGR01302       189 GLITMKDIVKR  199 (450)
T ss_pred             EEEEhHHhhhc
Confidence            99999999987

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.79  E-value=4.3e-18  Score=129.83  Aligned_cols=118  Identities=24%  Similarity=0.280  Sum_probs=104.3

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCee
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  122 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~  122 (270)
                      .+...+|+  ++++.++|++++.+++.+|.+++++.+||+++++++|-||..++.+..+....+.....++++|..++++
T Consensus        65 ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~  142 (187)
T COG3620          65 ITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT  142 (187)
T ss_pred             EeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence            46789999  8999999999999999999999999999999999999999999984444433555568999999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          123 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       123 v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++++.++..+.+++..++  .+.|+ ++|+++||||+.|+++.
T Consensus       143 Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~  182 (187)
T COG3620         143 VSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKL  182 (187)
T ss_pred             CCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHH
Confidence            999999999999888754  67777 58999999999999986

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.78  E-value=6.7e-18  Score=156.01  Aligned_cols=151  Identities=28%  Similarity=0.276  Sum_probs=126.7

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHH---hhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCc
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRE---RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS   77 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~   77 (270)
                      |+.+++..+++++++.|     |+|+++.+...+...+   ...  .....|.  ++++++++++|+.+++++|.+++++
T Consensus        62 M~~vt~~~lA~Ama~aG-----GiGfI~~~as~E~q~~~Irkvk--~~~~gmi--~dpvtV~pd~tV~dA~~lm~~~~~~  132 (505)
T PLN02274         62 MDTVTESDMAIAMAALG-----GIGIVHYNNTAEEQAAIVRKAK--SRRVGFV--SDPVVKSPSSTISSLDELKASRGFS  132 (505)
T ss_pred             CcccchHHHHHHHHhCC-----CeEEEcCCCCHHHHHHHHHHhh--ccccccc--CCCeeeCCCCcHHHHHHHHHhcCCc
Confidence            78899999999999999     9988886522232222   222  2344466  6899999999999999999999999


Q ss_pred             EEEEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC--CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC
Q 024256           78 SAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATIDTPIVDALHIMHDGKFLHLPVVDRDG  151 (270)
Q Consensus        78 ~i~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g  151 (270)
                      .+||+++    ++++|+||.+|+. ...     ..+.++.++|+++  ++++++++++.+|+++|.+++.+.+||+|+++
T Consensus       133 ~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g  206 (505)
T PLN02274        133 SVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG  206 (505)
T ss_pred             eEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC
Confidence            9999984    7999999999994 321     2356899999976  78999999999999999999999999999889


Q ss_pred             cEEEEEeHHHHHHHH
Q 024256          152 DVVDVVDVIHITHAA  166 (270)
Q Consensus       152 ~~~Givt~~dll~~~  166 (270)
                      +++|+||++||++..
T Consensus       207 ~LvGvITr~DIlk~~  221 (505)
T PLN02274        207 ELVDLVTRTDVKRVK  221 (505)
T ss_pred             eEEEEEEHHHHHHHh
Confidence            999999999999873

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.76  E-value=1.9e-17  Score=153.38  Aligned_cols=153  Identities=29%  Similarity=0.337  Sum_probs=131.3

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh-CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM-FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA   79 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i   79 (270)
                      |+..++.++++++++.|     |+|++|.+...+...+.+ .-..++++|.  ++++++++++|+.++++.|.+++++.+
T Consensus        49 m~~vT~~ela~ava~~G-----glG~i~~~~~~e~~~~~I~~vk~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~l  121 (486)
T PRK05567         49 MDTVTEARMAIAMAREG-----GIGVIHKNMSIEEQAEEVRKVKRSESGVV--TDPVTVTPDTTLAEALALMARYGISGV  121 (486)
T ss_pred             CCCcCHHHHHHHHHhCC-----CCCEecCCCCHHHHHHHHHHhhhhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEE
Confidence            78889999999999999     999999653333333322 2235788998  789999999999999999999999999


Q ss_pred             EEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccC-CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEE
Q 024256           80 VVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV  157 (270)
Q Consensus        80 ~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Giv  157 (270)
                      ||++ +++++|+++.+|+. ...    . ...++.++|+ ++++++++++++.++++.|.+++.+.+||+|++|+++|+|
T Consensus       122 pVvd~~g~lvGiVt~~DL~-~~~----~-~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI  195 (486)
T PRK05567        122 PVVDENGKLVGIITNRDVR-FET----D-LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI  195 (486)
T ss_pred             EEEccCCEEEEEEEHHHhh-hcc----c-CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            9999 89999999999995 321    1 2358999998 6889999999999999999999999999999999999999


Q ss_pred             eHHHHHHHH
Q 024256          158 DVIHITHAA  166 (270)
Q Consensus       158 t~~dll~~~  166 (270)
                      |.+||++..
T Consensus       196 T~~DLl~~~  204 (486)
T PRK05567        196 TVKDIEKAE  204 (486)
T ss_pred             EhHHhhhhh
Confidence            999999863

>PRK11573 hypothetical protein; Provisional

Probab=99.75  E-value=4.6e-17  Score=147.64  Aligned_cols=205  Identities=12%  Similarity=0.109  Sum_probs=150.2

Q ss_pred             hHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCC
Q 024256           30 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPA  107 (270)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~  107 (270)
                      .+++.++.+. ...+++++|+|+.++++++.++++.++++.+.+++++++||++  .+.++|+++.+|++ .....+...
T Consensus       175 ~~mi~~vl~l-~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll-~~~~~~~~~  252 (413)
T PRK11573        175 QDMLLSVLDL-EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEF  252 (413)
T ss_pred             HHHHHHHhcc-CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHH-HHhhccCcC
Confidence            3677777655 5789999999999999999999999999999999999999998  37899999999998 544332221


Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChH-H-------
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-E-------  179 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~-~-------  179 (270)
                      ....+.+++ +++.+|++++++.++++.|++++.+.+.|+|+.|...|+||..||++.++..+.++.+... .       
T Consensus       253 ~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~  331 (413)
T PRK11573        253 TKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQND  331 (413)
T ss_pred             CHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecC
Confidence            223455666 4778999999999999999999999999999999999999999999998876654432210 0       


Q ss_pred             -----HHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCC
Q 024256          180 -----AASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL  246 (270)
Q Consensus       180 -----~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~  246 (270)
                           .+....++..+.+-.-. +++.+.|..+++-...+..|+.++...+..        +.|+|.+.+|+
T Consensus       332 ~~~~v~G~~~l~d~~~~l~~~l-~~~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~--------~~f~V~~~~~~  394 (413)
T PRK11573        332 GSVIIDGTANVREINKAFNWHL-PEDDARTVNGVILEALEEIPVAGTRVRIGE--------YDIDILDVQDN  394 (413)
T ss_pred             CEEEEEeeeEHHHHHHHhCCCC-CCCCCeeHHHHHHHHhCcCCCCCCEEEECC--------EEEEEEEecCC
Confidence                 01112222223322211 123457777777777777777666544443        45888886544

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.74  E-value=8.5e-17  Score=120.30  Aligned_cols=109  Identities=24%  Similarity=0.308  Sum_probs=97.0

Q ss_pred             eeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-CCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           55 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        55 ~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~-~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +.++++++++.+|++.|.+++...+||++ +|+++|+++..|+. +.... .......++.++|..++.++++++++.++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   81 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV   81 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHH-HHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHH
Confidence            67899999999999999999999999998 88999999999997 55543 22233468999999999999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++.+++||+|++|+++|+|+.+|+++
T Consensus        82 ~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          82 WQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            99999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.73  E-value=1.7e-16  Score=118.60  Aligned_cols=110  Identities=28%  Similarity=0.343  Sum_probs=96.5

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      +++++.+++++.++++.|.+++.+.+||++ + ++++|+++.+|+++.+..........++.++|..++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            578999999999999999999999999998 5 89999999999983344433333346799999889999999999999


Q ss_pred             HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus        82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.72  E-value=7.8e-17  Score=142.62  Aligned_cols=123  Identities=22%  Similarity=0.279  Sum_probs=107.9

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  119 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~  119 (270)
                      ...+|+++|++.++++++++++|+.+|++.|.+++.+.+||++ +|+++|++|.+|+. +....+......++.++|+++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~  278 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG  278 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence            3447999999323899999999999999999998888888888 89999999999996 666554344456899999999


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +.++.+++++.+|++.|.+++.+++||++ +|+++|+||..|++++
T Consensus       279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            99999999999999999999999999998 6899999999999975

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.72  E-value=1.5e-16  Score=118.38  Aligned_cols=108  Identities=23%  Similarity=0.268  Sum_probs=94.9

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      ++.++++++++.+|++.|.+++.+.+||++ +|+++|+++..|+. +....  .....++.++|..++.++++++++.+|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~a   78 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDL   78 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHH
Confidence            367899999999999999989999999998 78999999999996 43211  112357999998889999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus        79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            99999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.72  E-value=1.1e-16  Score=133.69  Aligned_cols=128  Identities=26%  Similarity=0.316  Sum_probs=111.6

Q ss_pred             hhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHH----HhcCCCCCccchh
Q 024256           39 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV----ISQNLPADSTLVE  113 (270)
Q Consensus        39 ~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~----~~~~~~~~~~~v~  113 (270)
                      .+..-+..+||+  ++++++++++|+.+|.++|.++++..+||+| +.+++|+|+.+|+...+    .++-......+++
T Consensus       241 ~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk  318 (382)
T COG3448         241 RMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVK  318 (382)
T ss_pred             HhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCccc
Confidence            445668899999  8999999999999999999999999999999 78999999999998311    1111122346899


Q ss_pred             hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       114 ~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      .+|++++.++.++++..+++..|.+.+.+++||+|++|+++||||.+|++.++..
T Consensus       319 ~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         319 GIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             ccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987543

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.72  E-value=3.4e-16  Score=143.07  Aligned_cols=206  Identities=17%  Similarity=0.175  Sum_probs=154.7

Q ss_pred             ChhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCC
Q 024256           28 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNL  105 (270)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~  105 (270)
                      .++.+++++.+. ...+++++|+|++++.+++.+.++.++.+.+.+++++++||++  .+.++|+++.+|++ .....+.
T Consensus       192 ~E~~mi~~v~~l-~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll-~~~~~~~  269 (429)
T COG1253         192 EEREMINNVLDL-DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLL-RALLDGQ  269 (429)
T ss_pred             HHHHHHHHHhcc-CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHH-HHHhcCc
Confidence            344778887654 5788999999999999999999999999999999999999998  57899999999999 5444332


Q ss_pred             CCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHH------
Q 024256          106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE------  179 (270)
Q Consensus       106 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~------  179 (270)
                      .  .......+ .+++++++++++.++++.|++.+.+.+.|+|+.|.+.|+||..|+++.++..+.++.+...+      
T Consensus       270 ~--~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~  346 (429)
T COG1253         270 S--DLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQR  346 (429)
T ss_pred             c--ccchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEe
Confidence            1  11222233 28889999999999999999999999999999999999999999999988765544432110      


Q ss_pred             -------HHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCC
Q 024256          180 -------AASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL  246 (270)
Q Consensus       180 -------~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~  246 (270)
                             .......+..+.+-.-.+.+..+.|...++....++.|..++...++...        |+|+|.+|+
T Consensus       347 ~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~~--------~~V~~~~~~  412 (429)
T COG1253         347 DDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLR--------FEVLDMDGR  412 (429)
T ss_pred             cCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCCe--------EEEEEccCC
Confidence                   11112233333332211333346899999888888888877776666666        888886543

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.71  E-value=3.7e-16  Score=116.82  Aligned_cols=110  Identities=27%  Similarity=0.397  Sum_probs=97.4

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +++++.+++++.++++.|.+.+.+.+||++ +|+++|+++.+|+. +...+.......++.++|.+++.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-RALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA   80 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHH-HHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence            467899999999999999999999999999 79999999999997 6555443333456899999999999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCC--CcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~--g~~~Givt~~dll~  164 (270)
                      ++.|.+++..++||+|++  |+++|+||.+|+++
T Consensus        81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            999999999999999977  79999999999985

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=3.6e-16  Score=117.65  Aligned_cols=110  Identities=20%  Similarity=0.254  Sum_probs=95.5

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV  130 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~  130 (270)
                      ++.++++++++.+|++.|.+++.+++||++ +++++|+++..|+. +...........++.++|.+  ++.++++++++.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   80 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLL-KASIGGADLQKVPVGVIMTRMPNITTTTPEESVL   80 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-HHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence            468899999999999999999999999999 68999999999997 55443333334678899974  688999999999


Q ss_pred             HHHHHhHhCCCCEEEEEeCC---CcEEEEEeHHHHHH
Q 024256          131 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH  164 (270)
Q Consensus       131 ~a~~~~~~~~~~~lpVvd~~---g~~~Givt~~dll~  164 (270)
                      ++++.|.+++.+.+||+|++   |+++|+||.+|+++
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            99999999999999999976   69999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=4.5e-16  Score=117.36  Aligned_cols=110  Identities=14%  Similarity=0.189  Sum_probs=92.2

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-CCccchh------hccCCCCeeecC
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-ADSTLVE------KVMTPNPECATI  125 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~-~~~~~v~------~im~~~~~~v~~  125 (270)
                      ++.++++++++.+|++.|.+++.+.+||++ +|+++|+++.+|++ ++...+.. ....++.      .+|..++.++++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVI-NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP   80 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHH-HHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence            578999999999999999999999999998 89999999999997 55433211 1112233      344456789999


Q ss_pred             CCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          126 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       126 ~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.70  E-value=2.1e-16  Score=139.61  Aligned_cols=122  Identities=19%  Similarity=0.275  Sum_probs=107.5

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      ..+|+++|.+..+++++++++|+.+|++.|.+++...+||++ +|+++|+|+..|+. +.+..+... ..++.++|++++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence            457999999322299999999999999999988889999999 89999999999996 655443322 457999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .++.+++++.+|++.|.+++..++||+|++|+++|+||..|++++
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            999999999999999999999999999988999999999999975

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.70  E-value=2.9e-16  Score=114.58  Aligned_cols=93  Identities=22%  Similarity=0.267  Sum_probs=84.8

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      +++++++++|+.+|.+.|.+++++++||++ + |+++|++|..|+. +...                 +.++++++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~-~~~~-----------------~~~v~~~~~l~~   63 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI-LILR-----------------LVSIHPERSLFD   63 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh-hhee-----------------eEEeCCCCcHHH
Confidence            478999999999999999999999999998 4 7999999999996 3221                 778999999999


Q ss_pred             HHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHH
Q 024256          132 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH  164 (270)
Q Consensus       132 a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~  164 (270)
                      |++.|.+++.+++||+|++ |+++|++|.+|++.
T Consensus        64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            9999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=7.3e-16  Score=115.12  Aligned_cols=110  Identities=25%  Similarity=0.345  Sum_probs=95.1

Q ss_pred             ceeEECCCCCHHHHHHHHHHCC-CcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCC--CCHH
Q 024256           54 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV  130 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~-~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~--~~l~  130 (270)
                      +++++++++++.++++.|.+++ ...+||+++|+++|+++..|++ +...........++.++|.+++.+++++  +++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHH-HHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            4678999999999999998888 6778888888999999999997 6655433333467999998888889887  6899


Q ss_pred             HHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          131 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       131 ~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.69  E-value=8.2e-16  Score=114.31  Aligned_cols=111  Identities=58%  Similarity=0.840  Sum_probs=96.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++++.+++++.++++.|.+++.+.+||+++++++|+++..|++++....+......++.++|.+++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~   81 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL   81 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence            57889999999999999998889999999889999999999997444433322222579999988999999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|.+++.+++||++++|+++|+||..|++.
T Consensus        82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            9999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.69  E-value=6.2e-16  Score=117.01  Aligned_cols=111  Identities=27%  Similarity=0.417  Sum_probs=97.8

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC----------CCccchhhccCCCCe
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE  121 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~im~~~~~  121 (270)
                      ++++++++++++.++.+.|.+++++++||++ +|+++|+++..+++ +.......          ....++.++|.+++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLL-RHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHH-hhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            5688999999999999999999999999998 69999999999997 55433221          123478999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++++++.++++.|.+.+.+.+||+|++|+++|+||..|++.
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999999999999998899999999999985

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.69  E-value=1.5e-15  Score=112.41  Aligned_cols=109  Identities=31%  Similarity=0.481  Sum_probs=97.3

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++++++++++.++++.|.+.+.+.+||+++++++|+++.+|++ +....... ...++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l   79 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR   79 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHH-HHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence            47789999999999999999889999999989999999999997 55544332 34689999998999999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus        80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            9999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.69  E-value=2.6e-16  Score=119.73  Aligned_cols=112  Identities=17%  Similarity=0.123  Sum_probs=95.7

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      ++++++++++|+.++++.|.+++.+++||++ +++++|+++..+++ +....+....+.++.++|++++.++.+++++.+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~-~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLL-SSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-HHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence            4588999999999999999999999999998 78999999999998 444433333357999999999999999999999


Q ss_pred             HHHHhH---------hCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          132 ALHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       132 a~~~~~---------~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +.+++.         +.+...+||++++|+++|+||.+|++++
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            999653         2356778899988999999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=1.2e-15  Score=113.29  Aligned_cols=109  Identities=33%  Similarity=0.481  Sum_probs=95.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-CCCccchhhccCCCCeeecCCCCHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~-~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      ++.++++++++.++.+.|.+++++.+||++ +++++|+++.++++ +.+.... .....++.++|.+++.++++++++.+
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   80 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIV-RKVALRGASALDTPVSEIMTRNVITVTPDDTVDE   80 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHH-HHHhhcCCCccccCHHHhcCCCcEEECCCCcHHH
Confidence            577899999999999999999999999998 69999999999998 5544322 22245799999889999999999999


Q ss_pred             HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +++.|.+.+.+++||+++ |+++|+||..|+++
T Consensus        81 ~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          81 AMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.68  E-value=8.6e-16  Score=114.19  Aligned_cols=110  Identities=21%  Similarity=0.286  Sum_probs=98.2

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +++++++++++.++++.|.+.+++.+||++ +|+++|+++..++. ++..+.......++.++|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   80 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA   80 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence            578899999999999999999999999999 68999999999997 6665443333368999999999999999999999


Q ss_pred             HHHhHhCCCCEEEEEeC-CCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~-~g~~~Givt~~dll~  164 (270)
                      ++.|.+.+.+.+||+++ +|+++|+++..|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999997 789999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.68  E-value=1.5e-15  Score=113.11  Aligned_cols=109  Identities=27%  Similarity=0.412  Sum_probs=96.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      .+.++++++++.++++.|.+.+...+||++ +|+++|+++..|+. +.+.+.... ..++.++|.+++.++++++++.++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSL-DDPVSEVMNRNPITAKVGSSREEI   80 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHH-HHHhcCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence            367899999999999999999999999998 78999999999997 555444333 357999999889999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++.+++||+|++|+++|+||.+|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            99999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=2e-15  Score=112.22  Aligned_cols=111  Identities=32%  Similarity=0.478  Sum_probs=97.3

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++++++++++.+|++.|.+.+.+++||+++|+++|+++..+++.+....+......++.++|.+.+.++.+++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence            57889999999999999999999999999999999999999986344444443333359999998999999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|...+.+++||++++|+++|+++..|+++
T Consensus        82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=1.3e-15  Score=113.37  Aligned_cols=109  Identities=20%  Similarity=0.225  Sum_probs=95.8

Q ss_pred             eeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           55 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        55 ~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +..+.+++++.++++.|.+.+.+.+||++ +++++|+++.+|+. +...........++.++|.+++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVL-SYALESEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHH-HhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            67889999999999999999999999998 78999999999997 54333322234679999988999999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.2e-15  Score=115.58  Aligned_cols=110  Identities=32%  Similarity=0.388  Sum_probs=96.6

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCC-----------CccchhhccCCCC
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP  120 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~-----------~~~~v~~im~~~~  120 (270)
                      +++++++++++.++++.|.+.+.+.+||++ + |+++|+++..+++ +++......           ...++.++|.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDIL-KYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHH-HHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            578899999999999999999999999998 5 8999999999997 655433211           1347889998899


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      .++++++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999997799999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.67  E-value=1.2e-15  Score=113.60  Aligned_cols=111  Identities=28%  Similarity=0.390  Sum_probs=98.6

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      .+++++++++++.++++.|.+.+.+.+||++ +|+++|+++..++. +.+.........++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            3578899999999999999888889999998 78999999999997 666554443345799999999999999999999


Q ss_pred             HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +++.|.+++.+.+||++++|+++|+|+..||++
T Consensus        81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.67  E-value=2.7e-15  Score=111.01  Aligned_cols=108  Identities=26%  Similarity=0.341  Sum_probs=96.5

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++++++++++.++++.|.+.+++++||+++++++|+++..+++ +....+..  ..++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIA-HAIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence            57889999999999999999999999999889999999999997 65544322  2578999988999999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|.+.+.+++||++++|+++|+|+..|+++
T Consensus        79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            9999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.3e-15  Score=113.71  Aligned_cols=108  Identities=27%  Similarity=0.285  Sum_probs=93.5

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCC-----ccchhhccCCCCeeecCCC
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD-----STLVEKVMTPNPECATIDT  127 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~-----~~~v~~im~~~~~~v~~~~  127 (270)
                      +++++++++++.++++.|.+++.+.+||++ +|+++|+++.++++ +.........     ..++.++|.+++.++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   80 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA   80 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHH-HHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence            578999999999999999999999999999 78999999999997 5554322111     3579999998999999999


Q ss_pred             CHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          128 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       128 ~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.++++.|.+.+  .+||+|++|+++|++|..|+++
T Consensus        81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            9999999998754  6999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.67  E-value=2.9e-15  Score=110.98  Aligned_cols=108  Identities=23%  Similarity=0.381  Sum_probs=97.0

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +++++++++.++.++.+.|.+.+.+++||+++|+++|+++..|+. +......  ...++.++|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~   78 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV   78 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence            467899999999999999998899999999889999999999997 5554332  3468999999999999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++.+.+||++ +|+++|+||..|+++
T Consensus        79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            9999999999999999 899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2.8e-15  Score=111.34  Aligned_cols=109  Identities=30%  Similarity=0.511  Sum_probs=97.1

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      ++.++++++++.++++.|.+.+.+++||++ +++++|+++..+++ +.+..+... ..++.++|.+++.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGIDL-DTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHH-HHHhccCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence            467899999999999999999999999999 79999999999997 655544333 457899998999999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++...+||++++|+++|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            99999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.6e-15  Score=112.53  Aligned_cols=108  Identities=24%  Similarity=0.342  Sum_probs=96.1

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      ++.++++++++.++++.|.+.+.+.+||++ +|+++|+++..++. +.+....  ...++.++|..++.++++++++.++
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~   78 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI-RALAEGG--PDAPVRGVMRRDFPTVSPSATLDAV   78 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHH-HHHHhcC--CCCcHHHHhcCCCcEECCCCcHHHH
Confidence            477899999999999999988899999999 69999999999997 6554332  2357999998899999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++..++||+|++|+++|++|..|+.+
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.67  E-value=3.3e-15  Score=110.78  Aligned_cols=109  Identities=35%  Similarity=0.490  Sum_probs=95.6

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++++++++++.++.+.|.+++.+.+||+++++++|+++..++++.+...+.. ...++.++|..++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence            57889999999999999999889999999989999999999997333333222 23579999988999999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|.+.+.+++||+++ |+++|++|.+|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            9999999999999996 99999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.66  E-value=3.5e-15  Score=110.66  Aligned_cols=109  Identities=20%  Similarity=0.231  Sum_probs=95.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++++++++++.++++.|.+++...++|++++++.|+++..++. +....+......++.++|.+++..+++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLL-DAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHH-HHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            46789999999999999999899999999878999999999997 55543322234679999998999999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|.+++.+.+||+| +|+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~  110 (111)
T cd04589          81 LLMTRHRIHRVVVRE-GGEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHhCccEEEEee-CCEEEEEEEhHHhhc
Confidence            999999999999998 489999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=3.9e-15  Score=110.54  Aligned_cols=109  Identities=27%  Similarity=0.419  Sum_probs=94.1

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcC-CCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~-~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +++++++++++.++++.|.+++...++|.++|+++|+++..|++ +..... ......++.++|..++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   80 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVL-QAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV   80 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHH-HHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence            57889999999999999988888888777789999999999997 554432 2222457999998888999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++...+||++ +|+++|++|.+|+++
T Consensus        81 ~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          81 RRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            9999999999999998 689999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=1.7e-15  Score=115.21  Aligned_cols=110  Identities=22%  Similarity=0.208  Sum_probs=92.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCc-------------cchhhccCCC
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-------------TLVEKVMTPN  119 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~-------------~~v~~im~~~  119 (270)
                      +++++++++++.++++.|.+++++.+||++ +|+++|+++..|++ +..........             ....+.|..+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLK-GLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP   80 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhh-hhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence            578899999999999999999999999998 78999999999997 55433221111             1123467778


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.66  E-value=4.4e-15  Score=109.88  Aligned_cols=107  Identities=33%  Similarity=0.395  Sum_probs=95.7

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      ++++++++++++.++++.|.+++.+.+||++ +|+++|+++..+++ +......    .++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~----~~~~~~~~~~~~~v~~~~~l~~   76 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARDK----KSVEDIMTRNVITATPDEPIDV   76 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHH-HHHhhCc----cCHHHhcCCCCeEECCCCcHHH
Confidence            4688999999999999999999999999999 78999999999997 5544321    3588999889999999999999


Q ss_pred             HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +++.|.+++...+||++++|+++|+||..|+++
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          77 AARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            999999999999999998899999999999964

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.66  E-value=5.5e-16  Score=139.89  Aligned_cols=122  Identities=26%  Similarity=0.357  Sum_probs=112.7

Q ss_pred             hCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC
Q 024256           40 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  118 (270)
Q Consensus        40 ~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~  118 (270)
                      +..+++.++++  .+++++++.+|+.+|...|.+.|.+.+.+++ ++...||+|.+|+..+.+.++.+. ..+|+++||.
T Consensus       146 ~~~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~  222 (610)
T COG2905         146 FILTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTS  222 (610)
T ss_pred             HHHHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhcc
Confidence            34667899999  7899999999999999999999999888888 899999999999997777777665 5899999999


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++++..++.+.+|+-.|.+++++++||++ +|+++|+||..||++.
T Consensus       223 p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l  268 (610)
T COG2905         223 PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRL  268 (610)
T ss_pred             CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHh
Confidence            999999999999999999999999999997 8999999999999987

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.66  E-value=3.9e-15  Score=110.33  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=93.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      ++.++++++++.++++.|.+.+.+.+||++ + |+++|+++..+++ +.......  ..++.++| .++.++++++++.+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~   77 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLL-RALAEGEE--DLDLRDLL-RPPLFVPESTPLDD   77 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHH-HHHHcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence            578999999999999999998999999998 6 8999999999997 66554332  14577777 46788999999999


Q ss_pred             HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            999999999999999998899999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=5.3e-15  Score=109.79  Aligned_cols=110  Identities=30%  Similarity=0.459  Sum_probs=94.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++++++++++.++++.|.+.+.+.+||+++++++|+++..|+++............++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   81 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA   81 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence            46789999999999999999999999999977999999999998333333222234679999988899999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|.+++.+.+||+|++ +++|+|+.+|+++
T Consensus        82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            99999999999999965 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=3e-15  Score=115.59  Aligned_cols=109  Identities=23%  Similarity=0.370  Sum_probs=95.3

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCC-----------------------Cc
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-----------------------DS  109 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~-----------------------~~  109 (270)
                      +++++++++++.+|++.|.+.+.+.+||++ +|+++|+++..|++ +........                       ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLA-FAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHH-HHhhcccccccchhhhhhhhhccccccccccccc
Confidence            477899999999999999999999999999 79999999999998 554322111                       13


Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      .++.++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4799999989999999999999999999999999999996 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.5e-15  Score=113.31  Aligned_cols=110  Identities=33%  Similarity=0.428  Sum_probs=96.6

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC---------CCccchhhccCCCCeee
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECA  123 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~---------~~~~~v~~im~~~~~~v  123 (270)
                      +++++.+++++.++.+.|.+.+++.+||++ +|+++|+++..+++ +.......         ....++.++|..++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v   80 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL-RAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHH-HHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence            478899999999999999999999999999 69999999999997 55443221         12457899998899999


Q ss_pred             cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999999999998799999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.7e-15  Score=113.59  Aligned_cols=109  Identities=21%  Similarity=0.335  Sum_probs=91.4

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCC---------CccchhhccCCCCee
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA---------DSTLVEKVMTPNPEC  122 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~---------~~~~v~~im~~~~~~  122 (270)
                      ++.++++++++.+|++.|.+++++++||++ + |+++|+++..|++ +++..+...         ....+.++|.+++.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLV-EFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHH-HHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            478899999999999999998999999999 5 8999999999997 544322110         001223578888999


Q ss_pred             ecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHH
Q 024256          123 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  163 (270)
Q Consensus       123 v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll  163 (270)
                      +++++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            99999999999999999999999999889999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.65  E-value=3.1e-16  Score=136.19  Aligned_cols=151  Identities=30%  Similarity=0.351  Sum_probs=127.8

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh--CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM--FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS   78 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~   78 (270)
                      |++++|.+||+++|+-|     ||+++|.|.-.+.-....  .+..-..+++   ++++++|+.++.++++....++++.
T Consensus        70 MDTVtes~MAiaMAl~g-----gIg~IHhNctpe~QA~~v~~vK~~~~g~~~---~p~v~sp~~tvg~v~~~k~~~gF~g  141 (503)
T KOG2550|consen   70 MDTVTESEMAIAMALLG-----GIGFIHHNCTPEDQADMVRRVKNYENGFIN---NPIVISPTTTVGEVKEAKEKHGFSG  141 (503)
T ss_pred             CcccchhHHHHHHHhcC-----CceeeecCCCHHHHHHHHHHHHHhhccccc---CCcccCCcccchhhhhhcccccccc
Confidence            89999999999999999     999999984333322221  2222333443   5889999999999999999999999


Q ss_pred             EEEEe----CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEE
Q 024256           79 AVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV  154 (270)
Q Consensus        79 i~Vv~----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~  154 (270)
                      +||.+    ..+++|+||.+|+  .++.+    ....+.++|++.+++.+.+.++.++-+++++.+...+||||++|+++
T Consensus       142 ~pvTe~g~~~~KLvG~vtsrdi--~f~~~----~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelv  215 (503)
T KOG2550|consen  142 IPVTEDGKRGSKLVGIITSRDI--QFLED----NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELV  215 (503)
T ss_pred             cccccCCcccceeEEEEehhhh--hhhhc----ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCcee
Confidence            99996    4789999999999  55522    35789999999989999999999999999999999999999999999


Q ss_pred             EEEeHHHHHHH
Q 024256          155 DVVDVIHITHA  165 (270)
Q Consensus       155 Givt~~dll~~  165 (270)
                      .+|++.||.+.
T Consensus       216 a~~~rtDl~k~  226 (503)
T KOG2550|consen  216 AMLSRTDLMKN  226 (503)
T ss_pred             eeeehhhhhhh
Confidence            99999999986

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.65  E-value=1.8e-15  Score=112.90  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=92.5

Q ss_pred             ceeEECCCCCHHHHHHHHHHCC-CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCH
Q 024256           54 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI  129 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~-~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l  129 (270)
                      +++++++++++.+|++.|.+++ .+.+||++ +|+++|+++..|++ +......  ...++.++|.+  +++++.+++++
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l   78 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLR-AIPTSQW--AQTTVIQVMTPAAKLVTVLSEESL   78 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHH-HHHHhhc--cccchhhhhcccccceEECCCCcH
Confidence            5788999999999999997765 88999998 78999999999997 5443221  23578899975  36789999999


Q ss_pred             HHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          130 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       130 ~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      .++++.|.+++.+++||+|++|+++|++|.+|+++
T Consensus        79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            99999999999999999997799999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.65  E-value=3.5e-15  Score=109.68  Aligned_cols=103  Identities=23%  Similarity=0.289  Sum_probs=92.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +++++++++++.+|++.|.+++.+.+||++ +|+++|+++..|+. +..       ..++.++|.+.+..+.+++++.++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   73 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAA-RAS-------GGCCGDHAEPFKVTVSVDDDLRIV   73 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHH-Hhc-------ccchhhhcccCCEEECCCCCHHHH
Confidence            578899999999999999998999999998 79999999999996 431       135789998888889999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++.+.+||+|++|+++|+|+.+|++.
T Consensus        74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3.7e-15  Score=110.57  Aligned_cols=108  Identities=25%  Similarity=0.293  Sum_probs=95.3

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +++++++++++.++++.|.+++.+.+||++ +|+++|+++..|++ ++...... ...++.++|.+++.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            578899999999999999999999999998 79999999999997 55433222 2357899999999999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++.+.+||+|+ |+++|+||..|++.
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            99999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2.9e-15  Score=114.92  Aligned_cols=109  Identities=28%  Similarity=0.356  Sum_probs=95.4

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCc--------------------cch
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV  112 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~--------------------~~v  112 (270)
                      +++++.+++++.++++.|.+.+++++||++ +++++|+++..++. ++.........                    .++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHH-HHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            478899999999999999998999999999 78999999999997 55543322211                    178


Q ss_pred             hhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       113 ~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      .++|.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            8999889999999999999999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.65  E-value=4.6e-15  Score=109.65  Aligned_cols=105  Identities=30%  Similarity=0.291  Sum_probs=95.0

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      .++.++++++++.++++.|.+++.+.+||++ +|+++|+++..+++ ..     . ...++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~v~~~~~l~~   74 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA-GK-----D-PDTTIEKVMTKNPITVNPKTSVAS   74 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh-cc-----c-ccccHHHHhcCCCeEECCCCCHHH
Confidence            4688999999999999999999999999999 79999999999996 21     1 235799999889999999999999


Q ss_pred             HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +++.|.+++...+||+|++|+++|++|..|+++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            999999999999999998899999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=3.2e-15  Score=111.30  Aligned_cols=109  Identities=26%  Similarity=0.344  Sum_probs=94.9

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC--CCCccchhhccCCCCeeecCCCCHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL--PADSTLVEKVMTPNPECATIDTPIV  130 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~--~~~~~~v~~im~~~~~~v~~~~~l~  130 (270)
                      ++.++++++++.++++.|.+++.+.+||++ +++++|+++..+++ +.+....  .....++.++|.+++.++.+++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCL-KQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIV   80 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHH-HHhhhhhhccCCCccHHHHhccCceEECCCCcHH
Confidence            467899999999999999988888999998 78999999999997 4443211  1124679999998999999999999


Q ss_pred             HHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          131 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       131 ~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus        81 ~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          81 DLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            9999999999999999996 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.64  E-value=7.3e-15  Score=108.72  Aligned_cols=109  Identities=33%  Similarity=0.367  Sum_probs=96.0

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++.+++++++.++++.|.+.+.+.+||+++++++|+++..|+. +........ ..++.++|.+++.++.+++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~   79 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIR-RVPAEGREA-TVLVGDVMTRDPVTASPDETLRDAL   79 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHH-HHHhcCccc-ccCHHHhccCCCeEECCCCCHHHHH
Confidence            57889999999999999999889999999889999999999997 555433221 2368899999999999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            9999999999999998799999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.64  E-value=5.1e-15  Score=109.20  Aligned_cols=106  Identities=25%  Similarity=0.339  Sum_probs=94.8

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      +++.++++++++.++++.|.++++.++||++ +++++|+++..|+. +....     ..++.++|.+.+.++++++++.+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~-----~~~v~~~~~~~~~~v~~~~~~~~   75 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-QAYKE-----AKSLEDIMLEDVFTVQPDASLRD   75 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHH-HHhhc-----CCcHhHhhcCCceEECCCCcHHH
Confidence            3578899999999999999999999999999 68999999999996 44321     24788999999999999999999


Q ss_pred             HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +++.|.+.+..++||++++|+++|++|.+|+++
T Consensus        76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.64  E-value=8.1e-15  Score=110.15  Aligned_cols=110  Identities=25%  Similarity=0.361  Sum_probs=96.1

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC----------CCccchhhccCCCCeee
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA  123 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~im~~~~~~v  123 (270)
                      ++.++++++++.++++.|.+.+.+.+||+++|+++|+++..++. +.......          ....++.++|.+++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLK-LASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHH-HhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence            46789999999999999999999999999989999999999997 55432211          11356889999999999


Q ss_pred             cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++++.+++..|.+.+.+.+||++++|+++|+||..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999999999999997799999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=3.2e-15  Score=108.55  Aligned_cols=93  Identities=16%  Similarity=0.262  Sum_probs=84.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +++++.+++++.+|++.|.+++.+.+||++ +|+++|+++..|+. +..                 .+.++++++++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~-----------------~~~~v~~~~~l~~a   63 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI-AKS-----------------EVVTATKRTTVSEC   63 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHh-cCC-----------------CcEEecCCCCHHHH
Confidence            578999999999999999999999999998 79999999999996 210                 17889999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus        64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999998799999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.64  E-value=4.1e-15  Score=140.97  Aligned_cols=126  Identities=22%  Similarity=0.230  Sum_probs=109.0

Q ss_pred             HhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhcc
Q 024256           38 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM  116 (270)
Q Consensus        38 ~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im  116 (270)
                      +.+...+++|+|+  ++++++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+. +.+.......+.++.++|
T Consensus       442 ~~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~-~~l~~~~~~~~~~v~dim  518 (574)
T PRK01862        442 ERLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDIT-SDLLDKRDTTDKTAADYA  518 (574)
T ss_pred             hHHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHH-HHhhcccccccchHHHhc
Confidence            3445668999999  6788999999999999999999999999999 78999999999997 544332222246799999


Q ss_pred             CCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC--CcEEEEEeHHHHHHHH
Q 024256          117 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAA  166 (270)
Q Consensus       117 ~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--g~~~Givt~~dll~~~  166 (270)
                      ++++.++++++++.++++.|.+++.+.+||+|++  ++++|+||++|+++++
T Consensus       519 ~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        519 HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999976  4899999999999874

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.64  E-value=4.3e-15  Score=127.04  Aligned_cols=130  Identities=22%  Similarity=0.228  Sum_probs=114.7

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCe
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  121 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~  121 (270)
                      ..|.|+|+|..+..++.+++++.+..++-.+.+++++||+| ..+++|+++.+|+.      +..+ +.++..+|+++|+
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~~-~t~ieKVMtknp~  260 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKKP-STTIEKVMTKNPI  260 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCCC-CccHHHHhccCCe
Confidence            36899999988999999999999999999999999999999 89999999999997      3333 5799999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCC--CCChHH
Q 024256          122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT--AGSNNE  179 (270)
Q Consensus       122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~--~~~~~~  179 (270)
                      ++.+.+++..+.+.|.-.+++.+||+|++.+++|+||++|+++.+-....++  ....+|
T Consensus       261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpqvget~~d  320 (432)
T COG4109         261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQVGETISD  320 (432)
T ss_pred             eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCcccccHHH
Confidence            9999999999999999999999999999999999999999999854433333  344444

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=5.8e-15  Score=112.49  Aligned_cols=110  Identities=23%  Similarity=0.234  Sum_probs=94.1

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-------------CCCccchhhccCCC
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-------------PADSTLVEKVMTPN  119 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~-------------~~~~~~v~~im~~~  119 (270)
                      +++++++++++.+|+++|.+.+.+.+||++ +++++|+++..|+. +++....             .....++.++|.++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIV-DFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP   80 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHH-HHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence            577899999999999999999999999999 79999999999997 4432110             01135788999989


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEe--CCCcEEEEEeHHHHHH
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH  164 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd--~~g~~~Givt~~dll~  164 (270)
                      ++++++++++.++++.|.+.+...+||++  ++|+++|+||..|+++
T Consensus        81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            99999999999999999999999999985  4689999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=6.7e-15  Score=112.01  Aligned_cols=111  Identities=20%  Similarity=0.301  Sum_probs=91.2

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHH----HHhcC-CCCCccchhhccCCCCeee----
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR----VISQN-LPADSTLVEKVMTPNPECA----  123 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~----~~~~~-~~~~~~~v~~im~~~~~~v----  123 (270)
                      ++.++.+++++.++++.|.+++...+||++ +|+++|+++..|+.+.    ....+ ......+++++|.+++..+    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            367899999999999999989999999998 7899999999999621    12222 2223467999998755333    


Q ss_pred             --cCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHH
Q 024256          124 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH  164 (270)
Q Consensus       124 --~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~  164 (270)
                        .+++++.++++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              368899999999999999999999986 79999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.63  E-value=8.5e-15  Score=108.10  Aligned_cols=108  Identities=24%  Similarity=0.313  Sum_probs=92.8

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++++++++++.++++.|.+++.+.+||+++++++|+++..|+. +...........++.++|.+++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLL-DALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHH-HHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            46789999999999999999999999999889999999999997 55543332223579999988899999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++|.+ . ..+||++++|+++|++|.+|+++
T Consensus        81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          81 ELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence            99988 3 34789998899999999999985

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=8.9e-15  Score=110.36  Aligned_cols=110  Identities=23%  Similarity=0.400  Sum_probs=95.9

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC----------CCccchhhccCCCCeee
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA  123 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~im~~~~~~v  123 (270)
                      +++++++++++.++++.|.+++++++||+++|+++|+++..++. +.+.....          ....++.++|.++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV   80 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHH-HHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence            57889999999999999999999999999989999999999997 54432110          01246889999999999


Q ss_pred             cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            99999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=8.5e-15  Score=110.24  Aligned_cols=109  Identities=31%  Similarity=0.371  Sum_probs=95.2

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCC----------CCCccchhhccCCCCeee
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL----------PADSTLVEKVMTPNPECA  123 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~----------~~~~~~v~~im~~~~~~v  123 (270)
                      +++++++++++.++++.|.+.+.+.+||+++|+++|+++..++. +.+....          .....++.++|.+++.++
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIA-DALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI   80 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHH-HhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence            47889999999999999999999999999999999999999997 5443211          112357889998899999


Q ss_pred             cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.62  E-value=4.7e-15  Score=114.17  Aligned_cols=110  Identities=27%  Similarity=0.409  Sum_probs=95.8

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC----------------------CCCc
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------------------PADS  109 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~----------------------~~~~  109 (270)
                      ++++++++++++.++++.|.++++.++||++ +++++|+++..+++ +......                      ....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL-RRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHH-HHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            4688999999999999999999999999999 78999999999997 4432211                      0123


Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      .++.++|.+++.++++++++.++++.|.+.+.+++||+| +|+++|+||..|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            578999988999999999999999999999999999999 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=6.3e-15  Score=111.10  Aligned_cols=110  Identities=30%  Similarity=0.360  Sum_probs=95.1

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC----CC-----CCccchhhccCCCCeee
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN----LP-----ADSTLVEKVMTPNPECA  123 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~----~~-----~~~~~v~~im~~~~~~v  123 (270)
                      +++++.+++++.++++.|.+.+++++||++ +|+++|+++..+++ +.....    ..     ....++.++|.+++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDII-RAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHH-hhccccccccchhhhhhhccCcHHHHhcCCCeeE
Confidence            578899999999999999999999999999 79999999999997 432100    00     12457889998889999


Q ss_pred             cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          81 TPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            99999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.62  E-value=1.9e-14  Score=105.45  Aligned_cols=103  Identities=27%  Similarity=0.379  Sum_probs=92.6

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  133 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~  133 (270)
                      +++++++++++.++++.|.+++.+.+||+++++++|+++..++. +..      ...++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~-~~~------~~~~~~~~~~~~~~~v~~~~~l~~~~   74 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR-RAH------PNRLVADAMTREVVTISPEASLLEAK   74 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh-ccc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence            46789999999999999998898999999989999999999996 321      13578999999999999999999999


Q ss_pred             HHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          134 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       134 ~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.|.+++..++||+|+ |+++|++|..|++.
T Consensus        75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          75 RLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             HHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            9999999999999996 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.62  E-value=1.9e-14  Score=105.82  Aligned_cols=105  Identities=27%  Similarity=0.383  Sum_probs=94.2

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +++++++++.++.++++.|.+.+.+.+||+++++++|+++..+++ ..     . ...++.++|.+.+.++.+++++.++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~-~~-----~-~~~~~~~~~~~~~~~v~~~~~l~~~   74 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLL-GK-----D-PDETVEEIMSKDLVVAVPEMDIMDA   74 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh-cc-----C-ccccHHHhCCCCCeEECCCCCHHHH
Confidence            468899999999999999988888899999889999999999996 31     1 2357999998889999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+++...+||++++|+++|+++..|+++
T Consensus        75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.60  E-value=2.3e-14  Score=105.86  Aligned_cols=106  Identities=32%  Similarity=0.438  Sum_probs=92.5

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecC-CCCHH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV  130 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~-~~~l~  130 (270)
                      +++.++++++++.++.+.|.+++.+.+||++ +|+++|+++.+++. +..     ....++.++|...+..+.+ ++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~-----~~~~~v~~~~~~~~~~~~~~~~~l~   75 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR-FET-----DLDKPVSEVMTPENLLTTVEGTSLE   75 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee-ecc-----cCCCCHHHhcccCceEEecCCCCHH
Confidence            4578899999999999999999999999999 68999999999985 321     1245799999877776777 99999


Q ss_pred             HHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          131 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       131 ~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus        76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            9999999999999999998899999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.60  E-value=2.3e-14  Score=107.02  Aligned_cols=106  Identities=27%  Similarity=0.342  Sum_probs=92.0

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecC--C
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--D  126 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~--~  126 (270)
                      .+++++.+++++.++++.|.+++.+.+||+++    |+++|+++.+|+. ... .    ...++.++|.+.+..+..  +
T Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~-~----~~~~v~~~~~~~~~~~~~~~~   75 (114)
T cd04602           2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLT-D----SETPLSEVMTPREVLVVAPTG   75 (114)
T ss_pred             CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhh-c----cCCCHHHhcCCCceEEECCCC
Confidence            35788999999999999999888899999983    8999999999985 322 1    124699999887777866  9


Q ss_pred             CCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          127 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       127 ~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.59  E-value=5.8e-14  Score=104.85  Aligned_cols=109  Identities=34%  Similarity=0.444  Sum_probs=97.1

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      +.++++.++.++.+|...|.++++..+||++.++++|++|.+|++ +....+... ..++.++|+.++.++.++.++.++
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~-~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~   84 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL-RALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEA   84 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhccCCc-cccHHHhccCCcEEECCCCCHHHH
Confidence            578999999999999999999999999999977999999999998 555543322 126999999899999999999999


Q ss_pred             HHHhHh-CCCCEEEEEeCCC-cEEEEEeHHHHH
Q 024256          133 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT  163 (270)
Q Consensus       133 ~~~~~~-~~~~~lpVvd~~g-~~~Givt~~dll  163 (270)
                      ++.|.+ ++.+.+||+++++ +++|++|.+|++
T Consensus        85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            999999 6999999999885 999999999974

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.59  E-value=3.5e-14  Score=130.61  Aligned_cols=126  Identities=20%  Similarity=0.231  Sum_probs=107.6

Q ss_pred             HHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHH-----CCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC
Q 024256           32 FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNL  105 (270)
Q Consensus        32 ~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~-----~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~  105 (270)
                      .+..+.+. ...+++++|+  ++++++++++|+.++++.|.+     ++...++|++ +++++|+++.+|++ .     .
T Consensus       121 ~i~~ll~~-~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl-~-----a  191 (449)
T TIGR00400       121 AINLLLSY-SDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLI-L-----A  191 (449)
T ss_pred             HHHHHhCC-CcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHh-c-----C
Confidence            34444333 4678999999  789999999999999999986     3456788888 78999999999996 2     1


Q ss_pred             CCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       106 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      . .+.+++++|+++++++++++++.+|++.|.+++...+||+|++|+++|+||.+|+++.+.
T Consensus       192 ~-~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       192 K-PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             C-CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH
Confidence            1 246899999999999999999999999999999999999999999999999999998743

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=7.2e-14  Score=102.72  Aligned_cols=110  Identities=34%  Similarity=0.440  Sum_probs=95.7

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      ++++++++.++.++.+.|.+++.+.+||++ +++++|+++..+++ +............+.++|..++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA   80 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHH-HHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence            477899999999999999998899999999 68999999999998 5554433322233778898899999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.58  E-value=3.5e-14  Score=105.03  Aligned_cols=101  Identities=21%  Similarity=0.271  Sum_probs=89.1

Q ss_pred             ECCCCCHHHHHHHHHHCC-----CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHH
Q 024256           58 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  131 (270)
Q Consensus        58 v~~~~tv~~a~~~m~~~~-----~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~  131 (270)
                      +.+++++.++++.|.+++     +..+||++ +++++|+++.++++ +     .. ...++.++|.+++.++.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~-~-----~~-~~~~v~~~~~~~~~~i~~~~~~~~   74 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL-L-----AD-PDTPVSDIMDTDVISVSADDDQEE   74 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHh-c-----CC-CcchHHHHhCCCCeEEcCCCCHHH
Confidence            578999999999998876     46889998 78999999999996 3     11 245799999888999999999999


Q ss_pred             HHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       132 a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.|.+.+.+.+||+|++|+++|+||..|++++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            9999999999999999988999999999999874

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.58  E-value=2.1e-14  Score=123.58  Aligned_cols=113  Identities=27%  Similarity=0.352  Sum_probs=100.4

Q ss_pred             CCCccccccCCCc-eeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC
Q 024256           42 RPSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  119 (270)
Q Consensus        42 ~~~v~~im~~~~~-~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~  119 (270)
                      ..+++++|.  ++ ++++.+++++.++++.|.+.+.+++||++ +|+++|+++..|+. +....+.. ...+++++|.++
T Consensus       154 ~~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~-~~~~~~~~-~~~~v~~im~~~  229 (268)
T TIGR00393       154 LVKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR-RALLGGGS-LKSEVRDFMTLG  229 (268)
T ss_pred             hhhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHH-HHHhcCCc-ccCcHHHhCCCC
Confidence            358999998  45 89999999999999999999999999999 79999999999997 55543322 346899999999


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEe
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD  158 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt  158 (270)
                      +.++++++++.+|++.|.+++.+.+||+|++|+++|+|+
T Consensus       230 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       230 PKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.58  E-value=4e-14  Score=106.47  Aligned_cols=109  Identities=25%  Similarity=0.320  Sum_probs=94.5

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC---------CCCccchhhccCCCCeee
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECA  123 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~---------~~~~~~v~~im~~~~~~v  123 (270)
                      +++++++++++.+|++.|.+.+.+++||++ +++++|+++..++. +......         .....++.++|.+++.++
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i   80 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR-DASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV   80 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHH-HHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence            478899999999999999999999999999 69999999999997 4432110         122357899999999999


Q ss_pred             cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999986 99999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.57  E-value=6.7e-14  Score=102.76  Aligned_cols=100  Identities=26%  Similarity=0.241  Sum_probs=89.8

Q ss_pred             eEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHH
Q 024256           56 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI  135 (270)
Q Consensus        56 ~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~  135 (270)
                      .++++++++.++++.|.+.+.+.+||+++++++|+++..++. +..       ..++.++|.+.+.+++++.++.++++.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~   75 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIE-NAT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV   75 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHh-hhc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence            578999999999999999999999999889999999999996 321       135788998889999999999999999


Q ss_pred             hHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          136 MHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       136 ~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      |.+++.+.+||++ +|+++|++|..|++.
T Consensus        76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999998 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=1.2e-13  Score=107.68  Aligned_cols=109  Identities=30%  Similarity=0.378  Sum_probs=94.9

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC---------------------------
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP---------------------------  106 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~---------------------------  106 (270)
                      +++++++++++.++++.|.+.+++.+||+++++++|+++..+++ +++.....                           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDIL-KLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHH-HHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            57889999999999999999999999999889999999999997 55532210                           


Q ss_pred             -----CCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          107 -----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       107 -----~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                           ....++.++|.+++.++++++++.+++..|.+.+...+||+++ |+++|+++..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                 0235688899889999999999999999999999999999996 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.55  E-value=1.2e-13  Score=101.82  Aligned_cols=99  Identities=16%  Similarity=0.203  Sum_probs=88.7

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCC
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP  128 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~  128 (270)
                      +....+.+++++.++.+.|.+.+.+.+||+++    |+++|+++.+++. +...+           +|.+++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~-~~~~~-----------~m~~~~~~v~~~~~   69 (105)
T cd04591           2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLV-VALKN-----------YIDPSPFTVSPRTS   69 (105)
T ss_pred             CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHH-HHHHH-----------hccCCCceECCCCc
Confidence            45788999999999999999988889999985    8999999999996 44322           88888899999999


Q ss_pred             HHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          129 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       129 l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.++++.|.+++.+++||++ +|+++|+||.+|+++
T Consensus        70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            99999999999999999996 789999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.55  E-value=1.3e-13  Score=127.36  Aligned_cols=120  Identities=19%  Similarity=0.220  Sum_probs=102.1

Q ss_pred             hCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC
Q 024256           40 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  118 (270)
Q Consensus        40 ~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~  118 (270)
                      +...+++++|.  +++.++.+++++.++++.|.+++++.+||++ +++++|+|+..|++ +.+.........++.++|.+
T Consensus       332 l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~im~~  408 (454)
T TIGR01137       332 LKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELL-SALFAGKANPDDAVSKVMSK  408 (454)
T ss_pred             hccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH-HHHhccCCCcCCCHHHhcCC
Confidence            56678999998  6899999999999999999999999999998 78999999999997 55443322224579999999


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|.+++   .|||+++|+++|+||..||+++
T Consensus       409 ~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       409 KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence            9999999999999999998754   3555557999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.53  E-value=1.9e-13  Score=102.51  Aligned_cols=110  Identities=20%  Similarity=0.297  Sum_probs=92.0

Q ss_pred             ceeEECCCCCHHHHHHHHHHCC-CcEEEEEeCCEEEEEeeHHHHHHHHHhcCC---CCCccchhhccCCCCeeecCCCCH
Q 024256           54 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNL---PADSTLVEKVMTPNPECATIDTPI  129 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~-~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~im~~~~~~v~~~~~l  129 (270)
                      +++++++++++.++++.|...+ ++.+||+++|+++|+++..+++ +......   .....++.++|.+++..+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALM-ELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHH-HHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence            4678999999999999998876 8899999889999999999997 5443210   012357999999999999999999


Q ss_pred             HHHHHHhHhCCCC---EEEEEeCCCcEEEEEeHHHHHH
Q 024256          130 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       130 ~~a~~~~~~~~~~---~lpVvd~~g~~~Givt~~dll~  164 (270)
                      .++++.|.+++..   ..||++++|+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999988753   4478888899999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=1.1e-12  Score=96.47  Aligned_cols=103  Identities=28%  Similarity=0.409  Sum_probs=90.8

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      ++.++.+++++.+++..|.+.+++.+||++ +++++|+++..+++ +.    .  ...++.++|..++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~-~~----~--~~~~~~~~~~~~~~~v~~~~~l~~~   74 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-RN----P--EEEQLALLMTRDPPTVSPDDDVKEA   74 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hc----c--ccchHHHHhcCCCceECCCCCHHHH
Confidence            467899999999999999998999999998 68999999999996 31    1  1246888898889999999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +..|.+++.+.+||+| +|+++|++|..|+++
T Consensus        75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999999998 479999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.48  E-value=2.7e-13  Score=110.26  Aligned_cols=140  Identities=16%  Similarity=0.197  Sum_probs=119.5

Q ss_pred             HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCCC
Q 024256           31 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPAD  108 (270)
Q Consensus        31 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~  108 (270)
                      +.++.+.+. ...+|+|+|.|++...++..+.++.+++..+.+..++++||+.  .+.+.|++..+|++ +++.....  
T Consensus        56 ~mlEGvm~i-adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~--  131 (293)
T COG4535          56 DMLEGVMDI-ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAE--  131 (293)
T ss_pred             HHHHHHHHH-HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcc--
Confidence            444444433 3678999999999999999999999999999999999999997  57799999999999 77655433  


Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCC
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAG  175 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~  175 (270)
                      ...++++. +|.++|+++-.+...++-|+.++.+.+.|+|+.|.+.|+||..|+++.++..+.++.+
T Consensus       132 ~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~D  197 (293)
T COG4535         132 PFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYD  197 (293)
T ss_pred             cccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccc
Confidence            24688887 5778899999999999999999999999999999999999999999998877665444

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.47  E-value=4.9e-13  Score=115.63  Aligned_cols=178  Identities=16%  Similarity=0.182  Sum_probs=134.9

Q ss_pred             HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCCC
Q 024256           31 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPAD  108 (270)
Q Consensus        31 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~  108 (270)
                      +.+..+.+ +.+.+|+|+|.|+.++..++.+++.+++.+.+.+..++++|+..  -+.++|++..+|++ +++.+.....
T Consensus       189 dmL~gvLD-Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~ll-r~l~e~~~~~  266 (423)
T COG4536         189 DMLLGVLD-LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLL-RLLNEKNEFT  266 (423)
T ss_pred             HHHhcccc-cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHH-HHhhccCccc
Confidence            44444433 24679999999999999999999999999999999999999997  35699999999998 7776654333


Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKF  188 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  188 (270)
                      ...+..+. .+|+++++++++.+-+..|.+++-+...||||.|.+.|+||..||++.++..+.+.+++..+   ....+.
T Consensus       267 k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~---ev~~q~  342 (423)
T COG4536         267 KEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAK---EVIPQS  342 (423)
T ss_pred             HhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccch---hhcccC
Confidence            33344443 47889999999999999999999999999999999999999999999987666544443322   222233


Q ss_pred             HHHhhccCCCCCCCccccccccccccCCCCc
Q 024256          189 WDSAMALSPNDDEEDNRSEGSLKFASEGADT  219 (270)
Q Consensus       189 ~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~  219 (270)
                      .+++.+     ++..+.+|+.+.+.=+.|+.
T Consensus       343 dgs~ii-----dGs~~iRdlNr~l~W~Lp~e  368 (423)
T COG4536         343 DGSFII-----DGSANVRDLNRALDWNLPDE  368 (423)
T ss_pred             CCcEEE-----eCCCcHHHHHHhcCCCCCCC
Confidence            333322     12367788888776665543

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.43  E-value=2.9e-13  Score=113.39  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=54.4

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .....++|+++++++++++++.+|.+++.++++..+||+|++.+++|+||.+|+++.
T Consensus       244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~  300 (382)
T COG3448         244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH  300 (382)
T ss_pred             cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence            467899999999999999999999999999999999999999999999999999985

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.43  E-value=2.4e-12  Score=121.56  Aligned_cols=122  Identities=26%  Similarity=0.330  Sum_probs=105.9

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC---------------
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------------  105 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~---------------  105 (270)
                      ..+++++|.  ++++++++++++.+|++.|.+++++.+||++ +|+++|+++..|+.+.......               
T Consensus        67 ~~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~  144 (546)
T PRK14869         67 KPQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII  144 (546)
T ss_pred             CCcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence            368999999  6899999999999999999999999999999 7999999999999843332110               


Q ss_pred             -------------------------------------------------------------------C------------
Q 024256          106 -------------------------------------------------------------------P------------  106 (270)
Q Consensus       106 -------------------------------------------------------------------~------------  106 (270)
                                                                                         .            
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~  224 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN  224 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence                                                                               0            


Q ss_pred             ------------------CCccchhhccC-CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          107 ------------------ADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       107 ------------------~~~~~v~~im~-~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                                        ....+++++|+ +++.++++++++.++.+.|.+++.+.+||+|++|+++|+||.+|++..
T Consensus       225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~  302 (546)
T PRK14869        225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP  302 (546)
T ss_pred             CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence                              01247789999 889999999999999999999999999999999999999999999985

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.41  E-value=3.6e-12  Score=98.17  Aligned_cols=97  Identities=32%  Similarity=0.332  Sum_probs=79.3

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCc-----------cchhhcc-----
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-----------TLVEKVM-----  116 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~-----------~~v~~im-----  116 (270)
                      +++++.+++++.+|++.|.+++.+++||++ +|+++|+++..|++ +..........           ..+.++|     
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQ-RFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHH-HHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            578999999999999999999999999999 79999999999998 54433221110           1134455     


Q ss_pred             ----CCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC
Q 024256          117 ----TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG  151 (270)
Q Consensus       117 ----~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g  151 (270)
                          ..+++++++++++.+|++.|.+++.+.+||+|+++
T Consensus        81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence                46789999999999999999999999999998643

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.37  E-value=1.9e-12  Score=106.58  Aligned_cols=123  Identities=15%  Similarity=0.240  Sum_probs=89.2

Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQK  187 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  187 (270)
                      +..+++++|+++++++.+++|+.+|..+|.+++++..||+|+ ++++|++|.+|+..++.+  +......++.    |  
T Consensus       170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~--g~~~~kV~~~----M--  240 (294)
T COG2524         170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIAN--GNLDAKVSDY----M--  240 (294)
T ss_pred             CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHc--CCccccHHHH----h--
Confidence            357899999999999999999999999999999999999994 599999999999998553  2222222221    1  


Q ss_pred             HHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          188 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       188 ~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                       ...++.+.+...    ..|.++.+-          .+....        +-|+|.+|+.    +||+|+.|||..|+.
T Consensus       241 -~k~vitI~eDe~----i~dAir~M~----------~~nVGR--------LlV~ds~gkp----vGiITrTDIL~~ia~  292 (294)
T COG2524         241 -RKNVITINEDED----IYDAIRLMN----------KNNVGR--------LLVTDSNGKP----VGIITRTDILTRIAG  292 (294)
T ss_pred             -ccCCceEcCchh----HHHHHHHHH----------hcCcce--------EEEEccCCcE----EEEEehHHHHHHhhc
Confidence             223333332222    334444441          111222        5699999999    999999999999864

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.34  E-value=9.1e-12  Score=113.07  Aligned_cols=117  Identities=19%  Similarity=0.279  Sum_probs=105.1

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHC-----CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhh
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  114 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~-----~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  114 (270)
                      ...+++.+|+  ++++++.++.|+.+++..+++.     ....+.|+| ++++.|+++.++++       ...++.++++
T Consensus       130 ~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~  200 (451)
T COG2239         130 PEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKD  200 (451)
T ss_pred             Chhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHH
Confidence            3457899999  8999999999999999999964     467789999 88999999999997       2234689999


Q ss_pred             ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       115 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      +|.+.+++++++++.+++.+.|.+++.-.+||||++++++|+||..|++..+
T Consensus       201 im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi  252 (451)
T COG2239         201 LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998863

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.30  E-value=1.6e-11  Score=94.15  Aligned_cols=73  Identities=23%  Similarity=0.346  Sum_probs=60.8

Q ss_pred             eHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256           92 TSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus        92 t~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      +.+.++ +++.+... ....++.+|+.+++++++++++.++.++|.+++++.+||+++ |+++|-||..+|.+..+
T Consensus        49 t~k~Il-~aL~e~e~-~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~l  121 (187)
T COG3620          49 TVKRIL-EALEEAEK-TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALL  121 (187)
T ss_pred             HHHHHH-HHHHHhhc-ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHh
Confidence            345555 44443333 346789999999999999999999999999999999999994 99999999999999744

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.25  E-value=2.4e-11  Score=105.64  Aligned_cols=141  Identities=13%  Similarity=0.191  Sum_probs=95.4

Q ss_pred             EEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256           89 GILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA  165 (270)
Q Consensus        89 Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~  165 (270)
                      |.++..+-  .++.+-....+.+++++|++  ++.++++++++.++++.+.+.+++++||++++ ++++|+|+.+|++..
T Consensus        48 g~l~~~e~--~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~  125 (292)
T PRK15094         48 DLIDEDTR--DMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF  125 (292)
T ss_pred             CCCCHHHH--HHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence            66666554  55555556667899999998  68999999999999999999999999999876 789999999999964


Q ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCC
Q 024256          166 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG  245 (270)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g  245 (270)
                      ...  ......+.+    +    ......+.+    ..+..++++.+..+                  ......|+|++|
T Consensus       126 ~~~--~~~~~~l~~----l----~r~~~~V~e----~~~l~~~L~~m~~~------------------~~~~a~VvDe~G  173 (292)
T PRK15094        126 MRS--DAEAFSMDK----V----LRQAVVVPE----SKRVDRMLKEFRSQ------------------RYHMAIVIDEFG  173 (292)
T ss_pred             hhc--cCCcCCHHH----H----cCCCcCcCC----CCcHHHHHHHHHhc------------------CCEEEEEEeCCC
Confidence            210  011111111    1    111111110    12333333333111                  111356999999


Q ss_pred             CeeEeecCCCChHHHHHhhhhh
Q 024256          246 LMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       246 ~l~~~~vGivs~~Dil~~i~~~  267 (270)
                      .+    +|+||++||+++|..+
T Consensus       174 ~v----iGiVTleDIle~ivGe  191 (292)
T PRK15094        174 GV----SGLVTIEDILELIVGE  191 (292)
T ss_pred             CE----EEEeEHHHHHHHHhCC
Confidence            99    9999999999998653

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.24  E-value=3.3e-11  Score=78.51  Aligned_cols=55  Identities=35%  Similarity=0.570  Sum_probs=52.4

Q ss_pred             hhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       112 v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++++|+++++++++++++.++++.|.+++.+++||+|++|+++|++|.+||++++
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            5789999999999999999999999999999999999999999999999999873

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.21  E-value=1.2e-10  Score=104.35  Aligned_cols=113  Identities=28%  Similarity=0.362  Sum_probs=93.7

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCCC------ccchhhccC---CCCe
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPAD------STLVEKVMT---PNPE  121 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~------~~~v~~im~---~~~~  121 (270)
                      +.++.+.|..++.++...+.++++.++||.|  .+.+..++|.+-++ +.+.......      ..++.++-.   ..+.
T Consensus       162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl-~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~  240 (381)
T KOG1764|consen  162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRIL-KFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIA  240 (381)
T ss_pred             CCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHH-HHHHHhhcccccHHHhhCCHHHhCcchhhhhe
Confidence            3448999999999999999999999999998  68999999999998 6665433221      123333321   2578


Q ss_pred             eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      .+..++++.+|+++|..++++.+||+|++|+.+|.++..|+....
T Consensus       241 ~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~  285 (381)
T KOG1764|consen  241 SISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA  285 (381)
T ss_pred             eecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence            899999999999999999999999999999999999999998863

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.19  E-value=3.5e-11  Score=109.35  Aligned_cols=67  Identities=13%  Similarity=0.284  Sum_probs=57.5

Q ss_pred             HHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256           99 RVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA  165 (270)
Q Consensus        99 ~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~  165 (270)
                      +++.+-....+.+++++|+|  ++++++.++++.++++.+.+++++++||++++ ++++|+|+.+|++..
T Consensus       180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~  249 (408)
T TIGR03520       180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPH  249 (408)
T ss_pred             HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhH
Confidence            33444445557899999998  78999999999999999999999999999864 689999999999864

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.18  E-value=1.9e-10  Score=87.29  Aligned_cols=123  Identities=14%  Similarity=0.177  Sum_probs=76.5

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP  197 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (270)
                      +++.++++++++.++++.|.+++...+||+|++|+++|+++..|++............++.+    .+..   ....+..
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~----im~~---~~~~v~~   74 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSK----ALYK---QFKRVNK   74 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHH----Hhhc---cceecCC
Confidence            46788999999999999999999999999998899999999999998654432222223222    2211   1222221


Q ss_pred             CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256          198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVT  264 (270)
Q Consensus       198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i  264 (270)
                      .    .+..++.+.+....... ..+        .....+..|+|++|++    +||+|.+|+++.+
T Consensus        75 ~----~~~~~v~~~~~~~~~~~-~~~--------~~~~~~~~v~~~~~~~----~Givt~~Dl~~~~  124 (124)
T cd04608          75 N----DTLGKLSRILETDAFLL-VFF--------EQISSAAIGKEKQEKP----IGIVTKIDLLSYI  124 (124)
T ss_pred             C----CCHHHHHhhcccCCceE-EEe--------ccccccccccccccce----EEEEehhHhhhhC
Confidence            1    11222333221100000 000        0112235688999999    9999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=7.4e-11  Score=85.86  Aligned_cols=47  Identities=11%  Similarity=0.186  Sum_probs=43.1

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~  165 (270)
                      .++++++++++.+|.+.|.+++.+.+||+|++ |+++|++|..|+.+.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh
Confidence            46789999999999999999999999999974 899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=1.6e-10  Score=83.68  Aligned_cols=47  Identities=26%  Similarity=0.363  Sum_probs=43.6

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.+|++.|.+++++.+||+|++|+++|+++..|+...
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence            56789999999999999999999999999988999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=2e-10  Score=86.28  Aligned_cols=47  Identities=34%  Similarity=0.595  Sum_probs=44.1

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|++..
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~   48 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL   48 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHH
Confidence            56789999999999999999999999999988999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.11  E-value=9.6e-10  Score=98.65  Aligned_cols=115  Identities=21%  Similarity=0.238  Sum_probs=95.4

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-CCCCccc-hhhcc------CCCCeeec
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTL-VEKVM------TPNPECAT  124 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~-~~~~~~~-v~~im------~~~~~~v~  124 (270)
                      ++..+..++++.+|++.|...+++.+||++ .|+.+|.++..|+. .....+ ....... ++...      ...+++++
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~  316 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVI-HLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR  316 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhh-hhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence            488999999999999999999999999999 77779999999997 444332 2222223 33332      12679999


Q ss_pred             CCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHH
Q 024256          125 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  169 (270)
Q Consensus       125 ~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~  169 (270)
                      ++.++.+++..|..++++++.|||++|.++|+||..|++.++...
T Consensus       317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT  361 (381)
T ss_pred             ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999986543

>PRK11573 hypothetical protein; Provisional

Probab=99.04  E-value=2.1e-09  Score=97.91  Aligned_cols=66  Identities=12%  Similarity=0.172  Sum_probs=57.0

Q ss_pred             HHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256          100 VISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA  165 (270)
Q Consensus       100 ~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~  165 (270)
                      ++.+-....+.+++++|+|  ++.+++.+.++.++++.+.+.+++++||++++ ++++|+++.+|++..
T Consensus       177 mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~  245 (413)
T PRK11573        177 MLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRL  245 (413)
T ss_pred             HHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHH
Confidence            3334444557899999998  78999999999999999999999999999865 789999999999974

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.01  E-value=2.8e-09  Score=97.76  Aligned_cols=76  Identities=20%  Similarity=0.413  Sum_probs=66.9

Q ss_pred             EEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEe-CCCcEEEEEeHHHHHH
Q 024256           88 RGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITH  164 (270)
Q Consensus        88 ~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~g~~~Givt~~dll~  164 (270)
                      .|.+...+-  +++.+-....+.+++++|+|  ++.+++.+.+..++.+.+.+.+++++||++ +.++++|+++.+|++.
T Consensus       186 ~g~~~~~E~--~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~  263 (429)
T COG1253         186 EGVLEEEER--EMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR  263 (429)
T ss_pred             cCCcCHHHH--HHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence            577777775  67777777778999999998  678999999999999999999999999999 4478999999999999


Q ss_pred             H
Q 024256          165 A  165 (270)
Q Consensus       165 ~  165 (270)
                      +
T Consensus       264 ~  264 (429)
T COG1253         264 A  264 (429)
T ss_pred             H
Confidence            7

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.01  E-value=3.8e-10  Score=99.73  Aligned_cols=120  Identities=17%  Similarity=0.201  Sum_probs=81.2

Q ss_pred             cchhhccCCC--CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 024256          110 TLVEKVMTPN--PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQK  187 (270)
Q Consensus       110 ~~v~~im~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  187 (270)
                      .+|+++|.++  +.++++++++.+|++.|.+.+...+||+|++|+++|+|+..|+.+.+... ......+.+    .+. 
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~-~~~~~~v~~----im~-  270 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG-GALTTPVNE----AMT-  270 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC-CCcCCcHHH----hcC-
Confidence            5799999988  99999999999999999988889999999999999999999998743210 011111111    110 


Q ss_pred             HHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHh
Q 024256          188 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEV  263 (270)
Q Consensus       188 ~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~  263 (270)
                        .....+.+    ..+..+....+..          ...        ..++|+|++|++    +|+||++|++++
T Consensus       271 --~~~~~v~~----~~~l~~a~~~m~~----------~~~--------~~lpVvd~~~~l----vGvIt~~di~~~  318 (321)
T PRK11543        271 --RGGTTLQA----QSRAIDAKEILMK----------RKI--------TAAPVVDENGKL----TGAINLQDFYQA  318 (321)
T ss_pred             --CCCEEECC----CCCHHHHHHHHHH----------cCC--------CEEEEEcCCCeE----EEEEEHHHHHhc
Confidence              01111111    1233334443321          111        137899999999    999999999974

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.01  E-value=1.4e-09  Score=80.98  Aligned_cols=47  Identities=13%  Similarity=0.195  Sum_probs=43.4

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .+.++++++++.++++.|.+.+...+||+|++|+++|+++..|+.+.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~   48 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQ   48 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHH
Confidence            35678999999999999999999999999989999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.01  E-value=1.2e-09  Score=70.99  Aligned_cols=54  Identities=26%  Similarity=0.397  Sum_probs=50.0

Q ss_pred             ccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHH
Q 024256           45 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  101 (270)
Q Consensus        45 v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~  101 (270)
                      |+++|+  ++++++++++++.++++.|.+++.+++||+| +|+++|++|.+|++ +++
T Consensus         1 v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~-~~l   55 (57)
T PF00571_consen    1 VGDIMT--PPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLL-KAL   55 (57)
T ss_dssp             HHHHSB--SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHH-HHH
T ss_pred             CeECCc--CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHH-hhh
Confidence            568899  6899999999999999999999999999998 99999999999998 554

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.98  E-value=7.1e-10  Score=102.19  Aligned_cols=141  Identities=17%  Similarity=0.201  Sum_probs=94.0

Q ss_pred             EEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHh-----CCCCEEEEEeCCCcEEEEEeHH
Q 024256           86 KPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHD-----GKFLHLPVVDRDGDVVDVVDVI  160 (270)
Q Consensus        86 ~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~-----~~~~~lpVvd~~g~~~Givt~~  160 (270)
                      ++++.+...+-  +.+.+-....+.+++++|++++.++++++++.++++.|++     .+...+||+|++++++|+|+.+
T Consensus       109 ~lL~~l~~~er--~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~  186 (449)
T TIGR00400       109 QLLASSTEEER--KAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIR  186 (449)
T ss_pred             HHHHcCCHHHH--HHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHH
Confidence            34556666554  3333334445678999999999999999999999999975     3456789999889999999999


Q ss_pred             HHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEe
Q 024256          161 HITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKV  240 (270)
Q Consensus       161 dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~V  240 (270)
                      |++..      ....+..+    .+.   .....+.+    ..+..+..+.+...          .        ....+|
T Consensus       187 dLl~a------~~~~~v~~----im~---~~~~~v~~----~~~~~eal~~m~~~----------~--------~~~lpV  231 (449)
T TIGR00400       187 DLILA------KPEEILSS----IMR---SSVFSIVG----VNDQEEVARLIQKY----------D--------FLAVPV  231 (449)
T ss_pred             HHhcC------CCCCcHHH----HhC---CCCeeECC----CCCHHHHHHHHHHc----------C--------CCEEeE
Confidence            99853      11111111    111   01111111    12344445444211          1        113789


Q ss_pred             ecCCCCeeEeecCCCChHHHHHhhhhh
Q 024256          241 QDNKGLMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       241 vD~~g~l~~~~vGivs~~Dil~~i~~~  267 (270)
                      +|++|++    +|++|.+|+++.+..+
T Consensus       232 VD~~g~l----vGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       232 VDNEGRL----VGIVTVDDIIDVIQSE  254 (449)
T ss_pred             EcCCCeE----EEEEEHHHHHHHHHhh
Confidence            9999999    9999999999998654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.96  E-value=2.8e-09  Score=79.28  Aligned_cols=48  Identities=31%  Similarity=0.488  Sum_probs=44.1

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      |++.++++++++.++++.|.+.+...+||+|++|+++|+++..||+..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~   48 (115)
T cd04593           1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRA   48 (115)
T ss_pred             CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHH
Confidence            456789999999999999999999999999988999999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.94  E-value=1.3e-09  Score=80.74  Aligned_cols=47  Identities=15%  Similarity=0.292  Sum_probs=42.8

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.+|++.|.+++.+.+||+|++|+++|+|+..|+.+.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~   48 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI   48 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence            45788999999999999999999999999988999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.92  E-value=3e-08  Score=88.74  Aligned_cols=107  Identities=19%  Similarity=0.194  Sum_probs=92.2

Q ss_pred             ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHH
Q 024256           54 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  132 (270)
Q Consensus        54 ~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  132 (270)
                      ..+...++.+..++++.|...+.+.+.|++ ++++.|.++..++. ++....     ..+.+.+.+.+.++++++++.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  324 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKKA-----QGLQDVLIDDIYTVDAGTLLRET  324 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhcC-----CchhhhhccCCceECCCCcHHHH
Confidence            334567788999999999999999999998 89999999999985 554322     35778888888899999999999


Q ss_pred             HHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       133 ~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      +..|.+++.. +||+|++|+++|+||..+++.++.
T Consensus       325 ~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       325 VRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             HHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            9999999988 999999999999999999998743

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.92  E-value=4.3e-09  Score=79.22  Aligned_cols=48  Identities=25%  Similarity=0.346  Sum_probs=44.5

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..||+..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~   49 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRH   49 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhh
Confidence            577889999999999999999999999999988999999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.91  E-value=2.9e-09  Score=101.21  Aligned_cols=125  Identities=14%  Similarity=0.230  Sum_probs=83.6

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKF  188 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  188 (270)
                      ..+++++|++++.++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+.+..............+    .+.  
T Consensus       446 ~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~d----im~--  519 (574)
T PRK01862        446 TTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAAD----YAH--  519 (574)
T ss_pred             hCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHH----hcc--
Confidence            46899999999999999999999999999999999999998899999999999987532110000011111    110  


Q ss_pred             HHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCC--CCeeEeecCCCChHHHHHhhhh
Q 024256          189 WDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK--GLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       189 ~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~--g~l~~~~vGivs~~Dil~~i~~  266 (270)
                       .....+.+    ..+..+..+.+.+          ....        ..+|+|++  |++    +|++|++|+++++..
T Consensus       520 -~~~~~v~~----d~~L~~al~~m~~----------~~~~--------~lpVVd~~~~~~l----iGvIt~~DIl~~l~~  572 (574)
T PRK01862        520 -TPFPLLTP----DMPLGDALEHFMA----------FQGE--------RLPVVESEASPTL----AGVVYKTSLLDAYRR  572 (574)
T ss_pred             -CCCeeECC----CCCHHHHHHHHHh----------cCCC--------eeeeEeCCCCCeE----EEEEEHHHHHHHHHh
Confidence             01111111    1233444444411          1111        37899886  589    999999999998754

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.90  E-value=2.8e-09  Score=94.43  Aligned_cols=57  Identities=11%  Similarity=0.074  Sum_probs=51.4

Q ss_pred             ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|++  ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+.+.
T Consensus       201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~  259 (326)
T PRK10892        201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRV  259 (326)
T ss_pred             cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHH
Confidence            3468999987  89999999999999999999888888888988999999999999764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.90  E-value=3.3e-08  Score=89.58  Aligned_cols=116  Identities=18%  Similarity=0.203  Sum_probs=95.0

Q ss_pred             CccccccCCC-ceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCe
Q 024256           44 SLSTIIPEKS-KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  121 (270)
Q Consensus        44 ~v~~im~~~~-~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~  121 (270)
                      ++.++|.+.. ..+...++.+..+++..|...+.+.++|++ ++++.|+++..++. +....     ..++.+.+.+...
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~  348 (400)
T PRK10070        275 SAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQ-----QQGLDAALIDAPL  348 (400)
T ss_pred             chhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhc-----CCchhhhhccCCc
Confidence            5567775311 112345778899999999999999999999 89999999999996 44432     1357777878888


Q ss_pred             eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++++++++.+++..+.+.... +||+|++|+++|+|+..++++.+
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~  392 (400)
T PRK10070        349 AVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRAL  392 (400)
T ss_pred             eeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHH
Confidence            999999999999999987766 99999999999999999999874

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.90  E-value=5.1e-09  Score=77.79  Aligned_cols=48  Identities=17%  Similarity=0.333  Sum_probs=44.1

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~   49 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKL   49 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHh
Confidence            467899999999999999999999999999889999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.89  E-value=2.4e-08  Score=75.20  Aligned_cols=47  Identities=13%  Similarity=0.282  Sum_probs=43.2

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|.+++..++||+|++ |+++|+|+..|+++.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~   49 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEF   49 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHH
Confidence            56789999999999999998889999999987 899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.88  E-value=4.1e-09  Score=97.09  Aligned_cols=119  Identities=16%  Similarity=0.317  Sum_probs=82.0

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC---CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQK  187 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  187 (270)
                      ...+.|.+++.++++++++.++++.|.+++++.+||+|++   ++++|+||.+|++..     .....++.+.    +..
T Consensus        81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~-----~~~~~~V~dv----m~~  151 (450)
T TIGR01302        81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV-----KDKGKPVSEV----MTR  151 (450)
T ss_pred             cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh-----hcCCCCHHHh----hCC
Confidence            5667788899999999999999999999999999999977   799999999999753     1111222221    100


Q ss_pred             HHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          188 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       188 ~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                        ..+..+.+    ..+..++.+.+....          .        ..++|+|++|++    +|+||++||++.+++
T Consensus       152 --~~~~~V~~----~~sl~eal~~m~~~~----------~--------~~lpVVDe~G~l----vGiVT~~DIl~~~~~  202 (450)
T TIGR01302       152 --EEVITVPE----GIDLEEALKVLHEHR----------I--------EKLPVVDKNGEL----VGLITMKDIVKRRKF  202 (450)
T ss_pred             --CCCEEECC----CCcHHHHHHHHHHcC----------C--------CeEEEEcCCCcE----EEEEEhHHhhhcccC
Confidence              01111111    123334444442111          1        137899999999    999999999999865

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.88  E-value=8.8e-09  Score=75.92  Aligned_cols=109  Identities=15%  Similarity=0.223  Sum_probs=72.7

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP  197 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (270)
                      ++.+++++.++.++++.|.+.+.+.+||+|++ |+++|+++..|+++......  ......    .+.    .....+..
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~--~~~~~~----~~~----~~~~~v~~   71 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE--EDLDLR----DLL----RPPLFVPE   71 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC--CcCCHH----HHh----cCCeecCC
Confidence            46789999999999999999889999999987 99999999999998633211  000111    111    11211111


Q ss_pred             CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHh
Q 024256          198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEV  263 (270)
Q Consensus       198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~  263 (270)
                          ..+..++.+.+....                  .-.++|+|++|++    +|++|++|++++
T Consensus        72 ----~~~l~~~~~~~~~~~------------------~~~~~Vv~~~~~~----~Gvit~~di~~~  111 (111)
T cd04590          72 ----STPLDDLLEEMRKER------------------SHMAIVVDEYGGT----AGLVTLEDILEE  111 (111)
T ss_pred             ----CCcHHHHHHHHHhcC------------------CcEEEEEECCCCE----EEEeEHHHhhcC
Confidence                123344444442111                  1136799999999    999999999863

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=4.9e-09  Score=78.48  Aligned_cols=48  Identities=31%  Similarity=0.369  Sum_probs=44.1

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.++++++++.++++.|.+++...+||+|++|+++|+++..|+.+..
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~   49 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKAS   49 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            567899999999999999989999999999889999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.87  E-value=2e-08  Score=86.68  Aligned_cols=170  Identities=15%  Similarity=0.227  Sum_probs=108.8

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCC-CccchhhccCC--CCeeecCCCCH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPA-DSTLVEKVMTP--NPECATIDTPI  129 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~-~~~~v~~im~~--~~~~v~~~~~l  129 (270)
                      ...+-+.....+.+-+..+.+  -.++||....  .-.+|...++++++.+..-. +-..+.++|+|  ...++.+++++
T Consensus       134 ~~AVLvTGGF~~s~evi~lAn--e~~lPvlsts--YDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v  209 (432)
T COG4109         134 GNAVLVTGGFDVSDEVIKLAN--EKGLPVLSTS--YDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTV  209 (432)
T ss_pred             CCeEEEeCCCCccHHHHHhhc--ccCCceEEec--ccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccH
Confidence            344555555555443333332  2457888722  13457777777777654322 23579999995  77889999999


Q ss_pred             HHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccc
Q 024256          130 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGS  209 (270)
Q Consensus       130 ~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~  209 (270)
                      .+-.++..+.+.+++||+|...+++|+||.+|++..      ..+.++......       ..+.+..    .-|...+.
T Consensus       210 ~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~------~~~t~ieKVMtk-------np~tv~~----~tsVAsva  272 (432)
T COG4109         210 EDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK------KPSTTIEKVMTK-------NPITVRA----KTSVASVA  272 (432)
T ss_pred             HHHHHHHHHcCCCccceecccceEEEEEEehhhhcC------CCCccHHHHhcc-------CCeeecc----cchHHHHH
Confidence            999999999999999999999999999999999974      222222211000       0000000    01111111


Q ss_pred             cccccCCCCccccccCCCCCCCCCCce-eEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          210 LKFASEGADTARYLSYPSPSPGVPSAF-AFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       210 ~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      ..+           .+        +++ ..||+|++.++    +|++|++|+++++..
T Consensus       273 q~M-----------iw--------E~iem~PVv~~n~~l----lGiitR~dvlk~lq~  307 (432)
T COG4109         273 QMM-----------IW--------EGIEMLPVVDSNNTL----LGIITRQDVLKSLQM  307 (432)
T ss_pred             HHH-----------Hh--------ccceeeeEEcCCceE----EEEEEHHHHHHHHHH
Confidence            111           11        122 57899999999    999999999999864

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.87  E-value=5.1e-09  Score=96.62  Aligned_cols=118  Identities=19%  Similarity=0.211  Sum_probs=83.0

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFW  189 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (270)
                      .++.++|.++++++++++++.++++.|.+++++.+||+|++++++|+||.+|+...      .....+.+    .+.   
T Consensus        89 VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~------~~~~~V~d----iMt---  155 (479)
T PRK07807         89 VKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV------DRFTQVRD----VMS---  155 (479)
T ss_pred             cccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC------ccCCCHHH----hcc---
Confidence            46678999999999999999999999999999999999988999999999998532      11111221    111   


Q ss_pred             HHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          190 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       190 ~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      ..+..+.    ...+..+....+.....                  -.++|+|++|++    +|+||++||++...+
T Consensus       156 ~~~itV~----~d~sL~eAl~lM~~~~i------------------~~LPVVD~~g~l----vGIIT~~DIl~~~~~  206 (479)
T PRK07807        156 TDLVTLP----AGTDPREAFDLLEAARV------------------KLAPVVDADGRL----VGVLTRTGALRATIY  206 (479)
T ss_pred             CCceEEC----CCCcHHHHHHHHHhcCC------------------CEEEEEcCCCeE----EEEEEHHHHHHHhhC
Confidence            1111111    11334444444421111                  137899999999    999999999997654

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.85  E-value=6.2e-09  Score=94.77  Aligned_cols=130  Identities=21%  Similarity=0.293  Sum_probs=91.0

Q ss_pred             HHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCC-----CCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCC
Q 024256          100 VISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA  174 (270)
Q Consensus       100 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~-----~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~  174 (270)
                      .+....+++...++.+|+.++++++++.|+.+++..+++.+     ..++.|+|+++++.|+++.++++.+      +..
T Consensus       122 ~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a------~~~  195 (451)
T COG2239         122 RVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA------EPD  195 (451)
T ss_pred             HHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC------CcH
Confidence            33444555667899999999999999999999999999543     5788999999999999999999964      211


Q ss_pred             CChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCC
Q 024256          175 GSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGM  254 (270)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGi  254 (270)
                      ..+    ...+.+   ....+...    .++.+..+.+.          .+...        +.+|||++|++    +|+
T Consensus       196 ~~i----~~im~~---~~~~V~~~----~dqeevA~~~~----------~ydl~--------a~PVVd~~~~L----iG~  242 (451)
T COG2239         196 ELL----KDLMED---DVVSVLAD----DDQEEVARLFE----------KYDLL--------AVPVVDEDNRL----IGI  242 (451)
T ss_pred             hHH----HHHhcc---cceeeccc----CCHHHHHHHHH----------HhCCe--------ecceECCCCce----eee
Confidence            111    112211   11111111    22344444441          22233        37899999999    999


Q ss_pred             CChHHHHHhhhhhc
Q 024256          255 LPFPNFIEVTNYEY  268 (270)
Q Consensus       255 vs~~Dil~~i~~~~  268 (270)
                      +|.+|+++.++.|.
T Consensus       243 itiDDiidvi~eEa  256 (451)
T COG2239         243 ITIDDIIDVIEEEA  256 (451)
T ss_pred             eeHHHHHHHHHHHH
Confidence            99999999998764

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=1.2e-08  Score=75.74  Aligned_cols=50  Identities=24%  Similarity=0.289  Sum_probs=44.9

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHAAV  167 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~  167 (270)
                      +++.++++++++.++++.|.+++.+.+||+|++ |+++|+++..|+++.+.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~   51 (114)
T cd04630           1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVV   51 (114)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHH
Confidence            357789999999999999999999999999987 89999999999998644

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.85  E-value=7.4e-09  Score=95.80  Aligned_cols=58  Identities=26%  Similarity=0.398  Sum_probs=53.6

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ..+++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus       334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~  391 (454)
T TIGR01137       334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSAL  391 (454)
T ss_pred             cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            4679999999999999999999999999999999999999889999999999999864

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.85  E-value=8.1e-09  Score=75.45  Aligned_cols=47  Identities=34%  Similarity=0.484  Sum_probs=43.1

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.+++++.++.++++.|.+++...+||+|++|+++|+++..|++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~   48 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA   48 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence            56789999999999999999999999999988999999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.85  E-value=9.5e-09  Score=75.60  Aligned_cols=48  Identities=33%  Similarity=0.477  Sum_probs=44.3

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++..+++++++.++++.|.+++...+||+|++|+++|+++..|++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   49 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKA   49 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHH
Confidence            567889999999999999999999999999988999999999999865

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.83  E-value=9.4e-09  Score=75.36  Aligned_cols=48  Identities=31%  Similarity=0.496  Sum_probs=43.7

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++..++++.++.++++.|.+.+...+||+|++|+++|+++..|++..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~   49 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQA   49 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHH
Confidence            456789999999999999999899999999988999999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.82  E-value=1.7e-08  Score=74.66  Aligned_cols=47  Identities=26%  Similarity=0.410  Sum_probs=43.1

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~   48 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSY   48 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHh
Confidence            46788999999999999999999999999988999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.82  E-value=1.7e-09  Score=93.92  Aligned_cols=58  Identities=17%  Similarity=0.346  Sum_probs=52.2

Q ss_pred             CccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256          108 DSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA  165 (270)
Q Consensus       108 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~  165 (270)
                      ...+|+|+|.|  ++..++.+++.+++.+.+.+....++|+..++ ++++|++..+|+++.
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~  258 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRL  258 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHH
Confidence            35689999998  67899999999999999999999999999755 679999999999997

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.82  E-value=8.9e-09  Score=77.99  Aligned_cols=47  Identities=21%  Similarity=0.400  Sum_probs=43.5

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .+.++++++++.++++.|.++++..+||+|++|+++|+++..|+++.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~   48 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGL   48 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhh
Confidence            46789999999999999999999999999988999999999999885

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.82  E-value=6.5e-09  Score=77.03  Aligned_cols=110  Identities=17%  Similarity=0.255  Sum_probs=71.3

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCC
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPN  198 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (270)
                      .+.++++++++.++++.|.+.+...+||+|++|+++|+++.+|+++...... .....+.+.    +.   .....+.+ 
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~-~~~~~v~~~----~~---~~~~~v~~-   73 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGL-SLDDPVSEV----MN---RNPITAKV-   73 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCC-CcCCCHHHh----hc---CCCEEEcC-
Confidence            4567899999999999999989999999998899999999999987533111 111112111    10   01111111 


Q ss_pred             CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256          199 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE  262 (270)
Q Consensus       199 ~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~  262 (270)
                         ..+..++.+.+...          ...        .++|+|++|++    +|++|.+|+++
T Consensus        74 ---~~~l~~~~~~~~~~----------~~~--------~~~Vv~~~~~~----~Gvit~~di~~  112 (113)
T cd04607          74 ---GSSREEILALMRER----------SIR--------HLPILDEEGRV----VGLATLDDLLS  112 (113)
T ss_pred             ---CCCHHHHHHHHHHC----------CCC--------EEEEECCCCCE----EEEEEhHHhcc
Confidence               12333444444211          111        37799999999    99999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.81  E-value=1.6e-08  Score=76.65  Aligned_cols=46  Identities=28%  Similarity=0.398  Sum_probs=42.5

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+..
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~   47 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG   47 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence            4678999999999999999899999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.81  E-value=2.1e-08  Score=73.98  Aligned_cols=48  Identities=25%  Similarity=0.254  Sum_probs=43.8

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.+++++.++.++++.|.+.+...+||+|++|+++|+++..|+++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~   49 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAV   49 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHH
Confidence            567899999999999999998999999999889999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.81  E-value=1.1e-08  Score=75.96  Aligned_cols=47  Identities=13%  Similarity=0.184  Sum_probs=42.1

Q ss_pred             CCeeecCCCCHHHHHHHhHhCC-CCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGK-FLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~-~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|.+++ ...+||+|++|+++|+++..||+..
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~   49 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAI   49 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHH
Confidence            5678999999999999997665 7899999988999999999999976

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.79  E-value=1.3e-08  Score=74.77  Aligned_cols=106  Identities=13%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP  197 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (270)
                      .++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|++..      ....++.+    .+.   .....+..
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~------~~~~~v~~----~~~---~~~~~v~~   68 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK------DPDTTIEK----VMT---KNPITVNP   68 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc------cccccHHH----Hhc---CCCeEECC
Confidence            367889999999999999999888899999988999999999999853      11111111    110   01111111


Q ss_pred             CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256          198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE  262 (270)
Q Consensus       198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~  262 (270)
                          ..+..++.+.+..          +...        .++|+|++|++    +|++|.+|+++
T Consensus        69 ----~~~l~~~~~~~~~----------~~~~--------~~~Vv~~~~~~----~G~it~~di~~  107 (108)
T cd04596          69 ----KTSVASVAHMMIW----------EGIE--------MLPVVDDNKKL----LGIISRQDVLK  107 (108)
T ss_pred             ----CCCHHHHHHHHHH----------cCCC--------eeeEEcCCCCE----EEEEEHHHhhc
Confidence                1233444444421          1112        27799999999    99999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=5.9e-08  Score=72.78  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=43.3

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      ++.++++++++.++++.|.+.+++.+||+|+ |+++|+++..|+++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~   49 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAIS   49 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHH
Confidence            5678999999999999999999999999996 99999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.78  E-value=1.6e-08  Score=76.10  Aligned_cols=48  Identities=31%  Similarity=0.477  Sum_probs=43.5

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~~  166 (270)
                      ++.+++++.++.+++++|.+.+...+||+|++ |+++|+|+..|++...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~   50 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL   50 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHh
Confidence            56788999999999999999998999999987 9999999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.78  E-value=1.7e-08  Score=77.75  Aligned_cols=48  Identities=17%  Similarity=0.245  Sum_probs=44.0

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~   49 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAE   49 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHh
Confidence            467799999999999999999999999999889999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.76  E-value=1.9e-08  Score=93.57  Aligned_cols=120  Identities=18%  Similarity=0.285  Sum_probs=82.5

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFW  189 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (270)
                      ..++++|.+++.++++++++.++++.|.+++++.+||+|++++++|+||.+|+...     ......+.+    .+.  .
T Consensus        87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~-----~~~~~~V~d----im~--~  155 (486)
T PRK05567         87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFE-----TDLSQPVSE----VMT--K  155 (486)
T ss_pred             hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhc-----ccCCCcHHH----HcC--C
Confidence            35778899999999999999999999999999999999988999999999999753     111111111    110  0


Q ss_pred             HHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          190 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       190 ~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      ..+..+..    ..+..++...+...          ...        .++|+|++|++    +|++|.+||++.+.+
T Consensus       156 ~~~v~v~~----~~sl~eal~~m~~~----------~~~--------~lpVVDe~g~l----vGiIT~~DLl~~~~~  206 (486)
T PRK05567        156 ERLVTVPE----GTTLEEALELLHEH----------RIE--------KLPVVDDNGRL----KGLITVKDIEKAEEF  206 (486)
T ss_pred             CCCEEECC----CCCHHHHHHHHHHc----------CCC--------EEEEEcCCCcE----EEEEEhHHhhhhhhC
Confidence            01111111    12333444433111          111        37899999999    999999999998754

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.76  E-value=1.7e-08  Score=93.13  Aligned_cols=157  Identities=11%  Similarity=0.122  Sum_probs=97.5

Q ss_pred             ECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhH
Q 024256           58 ISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMH  137 (270)
Q Consensus        58 v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~  137 (270)
                      -.+-+|+.+..--..=.+.+.+-|++.+.     +..+.. ..+.      ..++.++|.++++++++++++.++++.|.
T Consensus        48 sa~mdtvTe~~MAi~~A~~GGigvIh~n~-----~i~~qa-e~v~------~VKv~eim~~~pvtv~p~~tI~eA~~lm~  115 (475)
T TIGR01303        48 VANMTAVAGRRMAETVARRGGIVILPQDL-----PIPAVK-QTVA------FVKSRDLVLDTPITLAPHDTVSDAMALIH  115 (475)
T ss_pred             eccchhhHHHHHHHHHHHCCCEEEEeCCC-----CHHHHH-HHHh------hcchhhccccCCeEECCCCCHHHHHHHHH
Confidence            34455555443322223456777777543     233332 2221      24667889999999999999999999999


Q ss_pred             hCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCC
Q 024256          138 DGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGA  217 (270)
Q Consensus       138 ~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~  217 (270)
                      +++.+.+||+| +++++|+||.+|+...      .....+.+    .+.   ..+..+.    ...+..+....+.... 
T Consensus       116 ~~~~~~~vVvD-~gklvGIVT~rDL~~~------~~~~~V~d----IMt---~~litv~----~~~sL~eAl~lM~~~~-  176 (475)
T TIGR01303       116 KRAHGAAVVIL-EDRPVGLVTDSDLLGV------DRFTQVRD----IMS---TDLVTAP----ADTEPRKAFDLLEHAP-  176 (475)
T ss_pred             hcCCeEEEEEE-CCEEEEEEEHHHhhcC------CCCCCHHH----Hcc---CCceEeC----CCCcHHHHHHHHHHcC-
Confidence            99999999998 5799999999998532      11111221    111   1111111    1133444444442111 


Q ss_pred             CccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          218 DTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       218 ~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                               ..        .++|+|++|++    +|+||++||++...+
T Consensus       177 ---------i~--------~LPVVD~~g~L----vGIIT~~DLl~~~~~  204 (475)
T TIGR01303       177 ---------RD--------VAPLVDADGTL----AGILTRTGALRATIY  204 (475)
T ss_pred             ---------CC--------EEEEEcCCCeE----EEEEEHHHHHHHHhC
Confidence                     11        37899999999    999999999987654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.76  E-value=3.7e-08  Score=72.57  Aligned_cols=48  Identities=19%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.+++++.++.++++.|.+.+.+.+||+|++++++|+++..|+++..
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~   49 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKV   49 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHH
Confidence            467889999999999999999999999999889999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.76  E-value=9.5e-09  Score=77.08  Aligned_cols=47  Identities=28%  Similarity=0.549  Sum_probs=43.4

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence            56789999999999999998889999999988999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.76  E-value=3e-08  Score=74.34  Aligned_cols=48  Identities=29%  Similarity=0.465  Sum_probs=44.0

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.++.+++++.++++.|.+.+++.+||++++|+++|+++..|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~   49 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAA   49 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHh
Confidence            467899999999999999999999999999889999999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.76  E-value=1.9e-08  Score=92.50  Aligned_cols=122  Identities=12%  Similarity=0.197  Sum_probs=103.1

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--C----CEEEEEeeHHHHHHHHHhcCCCC-------
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--E----NKPRGILTSKDILMRVISQNLPA-------  107 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~----~~~~Givt~~dl~~~~~~~~~~~-------  107 (270)
                      .+.+++++|.  +++++++.-..+....+.++...++.+||+|  .    +++.|+|-+..++ .++.+....       
T Consensus       580 r~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~~~  656 (762)
T KOG0474|consen  580 RNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRSTF  656 (762)
T ss_pred             hhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcccc
Confidence            4457899999  6899999999999999999999999999998  2    4788999999887 444321000       


Q ss_pred             -------------------------------CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEE
Q 024256          108 -------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV  156 (270)
Q Consensus       108 -------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Gi  156 (270)
                                                     .-..+..+|.+.|+++++++++..++.+|+.-+.+++.|++..++.+|+
T Consensus       657 ~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi  736 (762)
T KOG0474|consen  657 DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI  736 (762)
T ss_pred             CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence                                           0134567788999999999999999999999999999999988899999


Q ss_pred             EeHHHHHHH
Q 024256          157 VDVIHITHA  165 (270)
Q Consensus       157 vt~~dll~~  165 (270)
                      +|++|+..+
T Consensus       737 lTR~D~~~~  745 (762)
T KOG0474|consen  737 LTRKDLARY  745 (762)
T ss_pred             EehhhhhhH
Confidence            999999976

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.75  E-value=1.1e-07  Score=69.89  Aligned_cols=48  Identities=23%  Similarity=0.267  Sum_probs=43.2

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+.+..
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~   49 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRAL   49 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHH
Confidence            466789999999999999988889999999889999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=2.4e-08  Score=73.83  Aligned_cols=49  Identities=24%  Similarity=0.343  Sum_probs=44.2

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      ++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~   50 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL   50 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence            5678999999999999999888889999998899999999999997643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.74  E-value=4.1e-08  Score=72.50  Aligned_cols=111  Identities=19%  Similarity=0.197  Sum_probs=71.7

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCC
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPN  198 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (270)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..++++..............+    .+..   ....+.  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~----~~~~---~~~~v~--   73 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVAD----VMTR---NPKTID--   73 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHH----hhcc---CCeEEC--
Confidence            4567899999999999999888899999998899999999999997643221100011111    1100   111111  


Q ss_pred             CCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256          199 DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE  262 (270)
Q Consensus       199 ~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~  262 (270)
                        ...+..++.+.+..          .+.        ..+.|+|++|++    +|++|..||++
T Consensus        74 --~~~~~~~~~~~~~~----------~~~--------~~~~Vv~~~~~~----iG~it~~di~~  113 (114)
T cd04604          74 --PDALAAEALELMEE----------NKI--------TALPVVDDNGRP----VGVLHIHDLLR  113 (114)
T ss_pred             --CCCcHHHHHHHHHH----------cCC--------CEEEEECCCCCE----EEEEEHHHhhc
Confidence              11334444444421          111        137899989999    99999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.72  E-value=4.1e-08  Score=72.85  Aligned_cols=46  Identities=26%  Similarity=0.395  Sum_probs=39.7

Q ss_pred             CCeeecCCCCHHHHHHHhHhCC-CCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGK-FLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~-~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.+++++.++.++++.|.+++ ...+||+| +|+++|+++..|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~   48 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRL   48 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHH
Confidence            4667899999999999998887 56777777 6899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.72  E-value=5.6e-08  Score=71.73  Aligned_cols=47  Identities=21%  Similarity=0.270  Sum_probs=42.3

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~   47 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVR   47 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHH
Confidence            35678999999999999999999999999997 999999999999743

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.72  E-value=5.3e-08  Score=71.55  Aligned_cols=47  Identities=23%  Similarity=0.358  Sum_probs=42.9

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.++++++++.++++.|.+++++.+||+|+ |+++|+++..|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~   47 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHA   47 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHH
Confidence            35678999999999999999999999999997 999999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.71  E-value=1.8e-08  Score=74.19  Aligned_cols=103  Identities=21%  Similarity=0.384  Sum_probs=65.7

Q ss_pred             ecCCCCHHHHHHHhHhCC-----CCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256          123 ATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP  197 (270)
Q Consensus       123 v~~~~~l~~a~~~~~~~~-----~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (270)
                      +++++++.++++.|.+++     +..+||+|++|+++|+++.+|+++.      ....++.+    .+.   .....+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~------~~~~~v~~----~~~---~~~~~i~~   68 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA------DPDTPVSD----IMD---TDVISVSA   68 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC------CCcchHHH----HhC---CCCeEEcC
Confidence            578899999999998776     4689999988999999999999862      11111111    110   01111110


Q ss_pred             CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256          198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVT  264 (270)
Q Consensus       198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i  264 (270)
                          ..+..+....+...                  ....++|+|++|++    +|++|.+|+++++
T Consensus        69 ----~~~~~~~~~~~~~~------------------~~~~~~Vv~~~~~~----~Gvit~~dll~~~  109 (109)
T cd04606          69 ----DDDQEEVARLFEKY------------------DLLALPVVDEEGRL----VGIITVDDVIDVI  109 (109)
T ss_pred             ----CCCHHHHHHHHHHc------------------CCceeeeECCCCcE----EEEEEhHHhhhhC
Confidence                12333344433111                  11137899999999    9999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.71  E-value=5e-08  Score=71.50  Aligned_cols=47  Identities=28%  Similarity=0.370  Sum_probs=42.9

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~   48 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDAL   48 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHH
Confidence            4678899999999999999999999999997 9999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.70  E-value=2.7e-08  Score=76.30  Aligned_cols=48  Identities=27%  Similarity=0.421  Sum_probs=44.4

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.++++++++.++++.|.+.+..++||+|++|+++|+++..|+++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~   49 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRR   49 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHH
Confidence            567889999999999999999999999999988999999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.70  E-value=5.5e-08  Score=72.57  Aligned_cols=46  Identities=39%  Similarity=0.619  Sum_probs=42.5

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.+++++.++.++++.|.+.+...+||+|+ |+++|+++..|++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~   47 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLA   47 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHh
Confidence            5678999999999999999999999999997 999999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.69  E-value=4.1e-08  Score=91.29  Aligned_cols=116  Identities=10%  Similarity=0.138  Sum_probs=78.8

Q ss_pred             ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Q 024256          115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDS  191 (270)
Q Consensus       115 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (270)
                      .|.++++++++++++.+++++|.+++++.+||+|+   +|+++|+||.+|+...     .....++.+    .+... ..
T Consensus       105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v-----~~~~~~V~e----IMt~~-~~  174 (505)
T PLN02274        105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFV-----NDRETKLSE----VMTSD-DD  174 (505)
T ss_pred             cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhc-----cccCCcHHH----HhccC-CC
Confidence            36789999999999999999999999999999996   3799999999999653     111111221    11100 00


Q ss_pred             hhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          192 AMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       192 ~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      +..+.    ...+..+..+.+.....          .        .++|+|++|++    +|+||++||++.+++
T Consensus       175 lvtv~----~~~sL~eAl~~m~~~~~----------~--------~LPVVD~~g~L----vGvITr~DIlk~~~~  223 (505)
T PLN02274        175 LVTAP----AGIDLEEAEAVLKDSKK----------G--------KLPLVNEDGEL----VDLVTRTDVKRVKGY  223 (505)
T ss_pred             cEEEC----CCCCHHHHHHHHHHcCC----------C--------EEEEEcCCCeE----EEEEEHHHHHHHhhC
Confidence            11111    11334444444422111          1        37899999999    999999999999876

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.68  E-value=5.9e-08  Score=88.53  Aligned_cols=111  Identities=18%  Similarity=0.200  Sum_probs=84.6

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFW  189 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (270)
                      ..+.++++.++++++++.++.+|...|.+.+.+.+.++++++...||||.+|+...++....+...+             
T Consensus       149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~-------------  215 (610)
T COG2905         149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQK-------------  215 (610)
T ss_pred             HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccc-------------
Confidence            5788999999999999999999999999999999999999999999999999999855432221111             


Q ss_pred             HHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCce------------eEEeecCCCCeeEeecCCCCh
Q 024256          190 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAF------------AFKVQDNKGLMHRFTCGMLPF  257 (270)
Q Consensus       190 ~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------~~~VvD~~g~l~~~~vGivs~  257 (270)
                                                   .++.|+.|+.+.......            ..-+|-++|++    +||||.
T Consensus       216 -----------------------------V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~----~Gilt~  262 (610)
T COG2905         216 -----------------------------VSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQP----LGILTL  262 (610)
T ss_pred             -----------------------------hhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecCCee----eEEeeH
Confidence                                         134456666663222211            11166678999    999999


Q ss_pred             HHHHHhhhh
Q 024256          258 PNFIEVTNY  266 (270)
Q Consensus       258 ~Dil~~i~~  266 (270)
                      .||++...+
T Consensus       263 ~dIl~l~s~  271 (610)
T COG2905         263 TDILRLFSQ  271 (610)
T ss_pred             HHHHHhhCC
Confidence            999987654

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.68  E-value=4.5e-08  Score=74.70  Aligned_cols=48  Identities=27%  Similarity=0.416  Sum_probs=44.0

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|++...
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~   49 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKI   49 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHH
Confidence            567899999999999999988899999999889999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.68  E-value=3.1e-08  Score=73.54  Aligned_cols=46  Identities=24%  Similarity=0.464  Sum_probs=41.6

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITH  164 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~  164 (270)
                      ++.++++++++.++++.|.+++...+||+|+   +|+++|+++..|++.
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~   51 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF   51 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence            5678899999999999999888899999997   689999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.68  E-value=1.4e-07  Score=68.71  Aligned_cols=49  Identities=29%  Similarity=0.428  Sum_probs=44.1

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      ++.+++++.++.++++.|.+.+...+||+|++++++|+++..|++....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~   50 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALA   50 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHH
Confidence            4677899999999999999988899999998899999999999998643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.68  E-value=6.6e-08  Score=71.35  Aligned_cols=47  Identities=17%  Similarity=0.295  Sum_probs=42.2

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.++++++++.++++.|.+++.+.+||+++ |+++|+++..|++...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~   48 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRV   48 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence            5678999999999999999888899999996 9999999999998653

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.67  E-value=7.6e-08  Score=70.70  Aligned_cols=47  Identities=21%  Similarity=0.248  Sum_probs=42.3

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~   48 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLL   48 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHH
Confidence            4567999999999999999888899999986 9999999999998763

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.67  E-value=3.5e-08  Score=72.42  Aligned_cols=108  Identities=19%  Similarity=0.301  Sum_probs=70.6

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCC
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSP  197 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (270)
                      +++..++++.++.++++.|.+.+...+||+|++|+++|+++..+++..     .....++.+.    +.   .....+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~-----~~~~~~v~~~----~~---~~~~~~~~   69 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE-----TDLDKPVSEV----MT---PENLLTTV   69 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec-----ccCCCCHHHh----cc---cCceEEec
Confidence            456789999999999999998899999999988999999999998743     1111121111    10   00111111


Q ss_pred             CCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256          198 NDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE  262 (270)
Q Consensus       198 ~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~  262 (270)
                      .   ..+..++++.+....          ..        .+.|+|++|++    +|++|++|+++
T Consensus        70 ~---~~~l~~~~~~~~~~~----------~~--------~~~Vv~~~~~~----~Gvi~~~dil~  109 (110)
T cd04601          70 E---GTSLEEALELLHEHK----------IE--------KLPVVDDEGKL----KGLITVKDIEK  109 (110)
T ss_pred             C---CCCHHHHHHHHHHhC----------CC--------eeeEEcCCCCE----EEEEEhhhhhc
Confidence            0   123344444442111          11        26799999999    99999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.67  E-value=6.7e-08  Score=71.31  Aligned_cols=47  Identities=28%  Similarity=0.434  Sum_probs=43.3

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~   48 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI   48 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHH
Confidence            56789999999999999999899999999988999999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=1e-07  Score=72.24  Aligned_cols=47  Identities=21%  Similarity=0.364  Sum_probs=43.3

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++..+++++++.+++++|.+.+.+.+||+|++|+++|++|..|+...
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~   48 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDF   48 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHH
Confidence            45678999999999999999999999999988999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.66  E-value=7e-08  Score=70.44  Aligned_cols=44  Identities=27%  Similarity=0.313  Sum_probs=40.4

Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+...
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~   47 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA   47 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence            46899999999999999999999999997 999999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.66  E-value=7.8e-08  Score=70.65  Aligned_cols=47  Identities=26%  Similarity=0.474  Sum_probs=43.1

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.++++++++.++++.|.+.+...+||+|+ |+++|+++..|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~   47 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRV   47 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHH
Confidence            46788999999999999999988999999997 999999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.65  E-value=1.1e-07  Score=70.13  Aligned_cols=46  Identities=24%  Similarity=0.216  Sum_probs=41.9

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++++++++.++.++++.|.+.+...+||+|+ |++.|+++..|++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~   47 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDA   47 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHH
Confidence            4678899999999999999988899999997 899999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.64  E-value=1.1e-07  Score=69.98  Aligned_cols=47  Identities=28%  Similarity=0.388  Sum_probs=42.6

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.+++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..|++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~   47 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNR   47 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence            35678999999999999999988899999996 999999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.64  E-value=1.1e-07  Score=69.89  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=42.9

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.+++.+.++.++.+.|.+.+...+||+|+ |+++|+++..|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~   48 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKA   48 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHH
Confidence            46778999999999999999888899999997 999999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.63  E-value=4.7e-08  Score=72.03  Aligned_cols=47  Identities=23%  Similarity=0.193  Sum_probs=43.2

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~   48 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDL   48 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHH
Confidence            46789999999999999999999999999988999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.61  E-value=6.9e-08  Score=89.73  Aligned_cols=120  Identities=12%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC---CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQK  187 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  187 (270)
                      ...+.|..+++++++++++.+++++|.+++++.+||+|++   ++++|+||.+|+...     ......+.+    .+..
T Consensus        97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-----~~~~~~V~d----iMt~  167 (495)
T PTZ00314         97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-----KDKSTPVSE----VMTP  167 (495)
T ss_pred             ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-----ccCCCCHHH----hhCC
Confidence            4556788899999999999999999999999999999963   799999999999742     111112221    1100


Q ss_pred             HHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          188 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       188 ~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                       ...+..+.    ...+..+..+.+......                  .++|+|++|++    +|+||++||++...+
T Consensus       168 -~~~lvtv~----~~~sl~eAl~lm~e~~i~------------------~LPVVd~~g~l----iGIIT~~DIl~~~~~  219 (495)
T PTZ00314        168 -REKLVVGN----TPISLEEANEVLRESRKG------------------KLPIVNDNGEL----VALVSRSDLKKNRGY  219 (495)
T ss_pred             -cCCceEeC----CCCCHHHHHHHHHHcCCC------------------eEEEEcCCCcE----EEEEEehHhhhcccC
Confidence             00111111    113334444444221111                  37899999999    999999999988654

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.60  E-value=4.1e-08  Score=91.21  Aligned_cols=119  Identities=11%  Similarity=0.124  Sum_probs=76.7

Q ss_pred             chhhccC---CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHH
Q 024256          111 LVEKVMT---PNPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTM  184 (270)
Q Consensus       111 ~v~~im~---~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~  184 (270)
                      .++++|.   ..++++++++++.+|++.|.+++.+.+||+|+   +|+++|+||..|+...    ......++.+    .
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~----~~~~~~~V~d----I  166 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS----RMSLDTKVKD----F  166 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc----ccCCCCCHHH----H
Confidence            4555654   34568999999999999999999999999996   5899999999998642    0011111111    1


Q ss_pred             HHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256          185 MQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVT  264 (270)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i  264 (270)
                      +... ..++.+.+    ..+..+..+.+....          ..        .++|+|++|++    +|+||.+|+++.-
T Consensus       167 Mt~~-~~~itv~~----d~~l~eAl~lM~e~~----------i~--------~LPVVD~~g~L----vGIIT~~Dilk~~  219 (502)
T PRK07107        167 MTPF-EKLVTANE----GTTLKEANDIIWDHK----------LN--------TLPIVDKNGNL----VYLVFRKDYDSHK  219 (502)
T ss_pred             hCCC-CCeEEECC----CCcHHHHHHHHHHcC----------CC--------EEEEEcCCCeE----EEEEEhHHHHhcc
Confidence            1000 01111111    133444444442211          11        38899999999    9999999999864

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.58  E-value=1.1e-07  Score=71.03  Aligned_cols=47  Identities=36%  Similarity=0.533  Sum_probs=43.1

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.+++++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+...
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDA   48 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHH
Confidence            56789999999999999999998999999988999999999999865

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.58  E-value=9.1e-08  Score=69.61  Aligned_cols=46  Identities=24%  Similarity=0.383  Sum_probs=41.7

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|.+++...+||+| +|+++|+++..|+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~   47 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA   47 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence            567899999999999999988889999998 6999999999999863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.56  E-value=1.2e-07  Score=69.16  Aligned_cols=46  Identities=22%  Similarity=0.376  Sum_probs=41.7

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +++++++.+.++.++++.|.+.+...+||+|+ ++++|+++..||+.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~   47 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG   47 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            46778999999999999999888889999996 99999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=3e-07  Score=68.73  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=42.2

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|.+.+...+||+|+ |+++|+++..|++..
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~   47 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADA   47 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHh
Confidence            5678999999999999999989999999996 999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.53  E-value=9.8e-08  Score=82.12  Aligned_cols=56  Identities=21%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             cchhhccCCC-CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          110 TLVEKVMTPN-PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       110 ~~v~~im~~~-~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .+++++|.++ +.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~  211 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRA  211 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHH
Confidence            5788999888 9999999999999999999899999999988999999999999874

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.52  E-value=6.5e-08  Score=91.55  Aligned_cols=140  Identities=16%  Similarity=0.176  Sum_probs=101.6

Q ss_pred             CCCCCCh-hHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 024256           23 GTSISGP-NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  100 (270)
Q Consensus        23 g~~~~~~-~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~  100 (270)
                      |+.++.. .+..+.........+|+++|+. ++++++++++++.++.+.|.+++++.+||++ +|+++|+++..|++ +.
T Consensus       225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~-~~  302 (546)
T PRK14869        225 GVTVISTPYDTFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLL-SP  302 (546)
T ss_pred             CCeEEEecccHHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhh-cc
Confidence            4444332 2344444444456789999983 4799999999999999999999999999999 89999999999998 43


Q ss_pred             Hhc---------------CCCC-------CccchhhccCCCCeee---cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEE
Q 024256          101 ISQ---------------NLPA-------DSTLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD  155 (270)
Q Consensus       101 ~~~---------------~~~~-------~~~~v~~im~~~~~~v---~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~G  155 (270)
                      ...               +...       +..+++++|+..++.+   +...+..-+.++|.+.++...|++. ..-+.|
T Consensus       303 ~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~g  381 (546)
T PRK14869        303 VRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAA  381 (546)
T ss_pred             ccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Confidence            321               0000       1124567777766544   3456777889999999988888876 456889


Q ss_pred             EEeHHHHHHH
Q 024256          156 VVDVIHITHA  165 (270)
Q Consensus       156 ivt~~dll~~  165 (270)
                      |++-++.+++
T Consensus       382 IlsDT~~f~~  391 (546)
T PRK14869        382 ILSDTLLFKS  391 (546)
T ss_pred             HHHHhcCccC
Confidence            9988887764

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=3.7e-07  Score=67.24  Aligned_cols=48  Identities=25%  Similarity=0.302  Sum_probs=42.6

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      ++.+++++.++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~   49 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVV   49 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHh
Confidence            5677899999999999999988999999995 59999999999998643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.49  E-value=4.3e-07  Score=67.27  Aligned_cols=53  Identities=32%  Similarity=0.463  Sum_probs=47.2

Q ss_pred             hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       114 ~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      +.|.+.+.++.++.++.+|+..|.++++..+||++ .++++|++|.+|++++..
T Consensus         3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~   55 (117)
T COG0517           3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALA   55 (117)
T ss_pred             ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHh
Confidence            34557889999999999999999999999999998 458999999999999844

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.49  E-value=3.6e-07  Score=68.09  Aligned_cols=46  Identities=22%  Similarity=0.248  Sum_probs=41.4

Q ss_pred             CCeeecCCCCHHHHHHHhHhCC-CCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGK-FLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~-~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.++++++++.++++.|...+ .+.+||+|+ |+++|+++..|++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~   48 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMEL   48 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHH
Confidence            4567899999999999998876 889999998 999999999999865

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.49  E-value=3.6e-07  Score=68.05  Aligned_cols=55  Identities=29%  Similarity=0.579  Sum_probs=51.5

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      .++.++|.+++.++++++++.++++.|.+.+...+||+|++|+++|+|+..||.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            5799999999999999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.48  E-value=4.2e-08  Score=80.30  Aligned_cols=90  Identities=9%  Similarity=0.159  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCC
Q 024256           63 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGK  140 (270)
Q Consensus        63 tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~  140 (270)
                      +-.+.+.+++......+.           ....+  ..+..-....+..++++|.|  ..++++.+.++.+.+..+.+..
T Consensus        33 nr~eLl~liRdse~n~Li-----------D~dt~--~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesa   99 (293)
T COG4535          33 NREELLELIRDSEQNELI-----------DADTL--DMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESA   99 (293)
T ss_pred             CHHHHHHHHHHhhhcccc-----------ChhHH--HHHHHHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhc
Confidence            447778877766544322           21111  22222112224679999988  6789999999999999999999


Q ss_pred             CCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256          141 FLHLPVVDRD-GDVVDVVDVIHITHA  165 (270)
Q Consensus       141 ~~~lpVvd~~-g~~~Givt~~dll~~  165 (270)
                      .+++||+.++ +.+.||+-.+||+++
T Consensus       100 HSRfPVi~edkD~v~GIL~AKDLL~~  125 (293)
T COG4535         100 HSRFPVISEDKDHVEGILLAKDLLPF  125 (293)
T ss_pred             cccCCcccCCchhhhhhhhHHHHHHH
Confidence            9999999865 679999999999997

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=1.6e-06  Score=67.17  Aligned_cols=47  Identities=30%  Similarity=0.462  Sum_probs=43.2

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      +++++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~   48 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLL   48 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHH
Confidence            5678999999999999999999999999997 9999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.44  E-value=4.4e-07  Score=66.56  Aligned_cols=47  Identities=15%  Similarity=0.092  Sum_probs=42.2

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~~  165 (270)
                      ....+++++++.++.+.+.+.+...+||+|+   +|+++|+|+.+|+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~   52 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVA   52 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHH
Confidence            4567899999999999999988889999997   6899999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.36  E-value=1.4e-06  Score=63.53  Aligned_cols=46  Identities=22%  Similarity=0.371  Sum_probs=41.6

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      ++.++.+++++.+++..|.+.+.+.+||++++++++|+++..+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~   47 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR   47 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHh
Confidence            4567889999999999999888899999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.36  E-value=6.9e-06  Score=76.05  Aligned_cols=111  Identities=11%  Similarity=0.167  Sum_probs=89.0

Q ss_pred             ceeEECCC-CCHHHHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcC----------------------CCC
Q 024256           54 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN----------------------LPA  107 (270)
Q Consensus        54 ~~~~v~~~-~tv~~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~~~~----------------------~~~  107 (270)
                      .+.+++.+ +++.+...+|.+..++.+||+-   .++++|++.++++...+....                      ...
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP  636 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence            35555555 8999999999999999999874   578999999999973333110                      001


Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .....+++|...|+++...++.+-++++|++-+...+.|.. +|++.|+||.+|+++.
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRH  693 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHh
Confidence            12457888988999999999999999999999998886664 8999999999999985

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.31  E-value=3.8e-06  Score=64.53  Aligned_cols=49  Identities=22%  Similarity=0.182  Sum_probs=45.2

Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++++..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~   50 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF   50 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence            5678999999999999999999999999998899999999999998754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=9e-06  Score=73.81  Aligned_cols=153  Identities=15%  Similarity=0.115  Sum_probs=91.2

Q ss_pred             cEEEEEeCCEEEEEeeHHHHHH--------HHHhcCCCCCccchhhccCCCC---eeecCCCCHHHHHHHhHhCCCCEEE
Q 024256           77 SSAVVTVENKPRGILTSKDILM--------RVISQNLPADSTLVEKVMTPNP---ECATIDTPIVDALHIMHDGKFLHLP  145 (270)
Q Consensus        77 ~~i~Vv~~~~~~Givt~~dl~~--------~~~~~~~~~~~~~v~~im~~~~---~~v~~~~~l~~a~~~~~~~~~~~lp  145 (270)
                      +.+.++++|+++..-+..+++.        .++.......-.++.++|.+.+   +...++.+..+++..|...+.+.++
T Consensus       233 Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (400)
T PRK10070        233 DRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGY  312 (400)
T ss_pred             CEEEEEECCEEEecCCHHHHHhCcccHHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEE
Confidence            4455555666665555566541        1111111111245667775432   2334667889999999999999999


Q ss_pred             EEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccC
Q 024256          146 VVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY  225 (270)
Q Consensus       146 Vvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~  225 (270)
                      |+|+++++.|+++..++....-     ......+.    .   ......+.    ...+.++++..+..           
T Consensus       313 ~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~----~---~~~~~~~~----~~~~~~~~~~~~~~-----------  365 (400)
T PRK10070        313 VIERGNKFVGAVSIDSLKTALT-----QQQGLDAA----L---IDAPLAVD----AQTPLSELLSHVGQ-----------  365 (400)
T ss_pred             EEcCCCcEEEEEeHHHHHhhhh-----cCCchhhh----h---ccCCceeC----CCCCHHHHHHHHHh-----------
Confidence            9999999999999999976411     11111110    0   00011111    11333444443311           


Q ss_pred             CCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhhhc
Q 024256          226 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEY  268 (270)
Q Consensus       226 p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~~  268 (270)
                              .....+|+|++|++    +|+||..++++++...-
T Consensus       366 --------~~~~~~v~~~~~~~----~g~~~~~~~~~~~~~~~  396 (400)
T PRK10070        366 --------APCAVPVVDEDQQY----VGIISKGMLLRALDREG  396 (400)
T ss_pred             --------CCCcEEEECCCCcE----EEEEEHHHHHHHHHhcC
Confidence                    11127899999999    99999999999997643

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.24  E-value=4.3e-06  Score=61.46  Aligned_cols=70  Identities=14%  Similarity=0.258  Sum_probs=56.2

Q ss_pred             CCChhHHHHHHHHh---hCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHH
Q 024256           26 ISGPNTFIETLRER---MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL   97 (270)
Q Consensus        26 ~~~~~~~~~~~~~~---~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~   97 (270)
                      ..+..+......+.   ....++.++|.  .++.++.+++++.++++.|.+++...+||+++|+++|++|.+|++
T Consensus        38 ~v~~~dl~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~  110 (112)
T cd04625          38 LLTFREVLQAMAQHGAGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA  110 (112)
T ss_pred             EEEHHHHHHHHHhcCCchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence            34555555444321   12357999998  678899999999999999999999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.24  E-value=4.2e-06  Score=62.27  Aligned_cols=53  Identities=30%  Similarity=0.415  Sum_probs=49.2

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHH
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL   97 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~   97 (270)
                      .+++++|.  +++.++++++++.++++.|.+++...+||++ +|+++|+++..|+.
T Consensus        58 ~~v~dim~--~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVIN--RKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcC--CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence            56999998  6789999999999999999999999999999 78999999999984

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.22  E-value=8e-07  Score=76.40  Aligned_cols=148  Identities=19%  Similarity=0.262  Sum_probs=113.0

Q ss_pred             hhhhhhhHHHHHHHhhhHHhhCCCC----CChhHHHHHHHHhhCC---CCccccccCCCceeE-ECCCCCHHHHHHHHHH
Q 024256            2 ERAAEKGKAIAAAVEGVEKHWGTSI----SGPNTFIETLRERMFR---PSLSTIIPEKSKVVT-ISPTDTVLMATKKMLE   73 (270)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~---~~v~~im~~~~~~~~-v~~~~tv~~a~~~m~~   73 (270)
                      +.|..+|..++..+.|-.-+.|.+.    .+.++|+..+.+.+..   .+..++|.+ .+... -.+...-..+++.+.+
T Consensus       226 dEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~  304 (386)
T COG4175         226 DEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRD  304 (386)
T ss_pred             HHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhh
Confidence            5678888888888988777777542    4456888888765533   357999985 33332 2334445678888888


Q ss_pred             CCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCc
Q 024256           74 LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  152 (270)
Q Consensus        74 ~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~  152 (270)
                      ...+.+.+++ .++.+|+++..+.. .          .    .+.+++.++..++++.+.+....+... .+||+|++|+
T Consensus       305 ~~~~~~~~~~~~~~~~g~v~~~~~~-~----------~----~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r  368 (386)
T COG4175         305 EGREYGYAVDRGNKFVGVVSIDSLV-K----------A----ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGR  368 (386)
T ss_pred             ccchhhHHHhccCceeeEEeccchh-c----------c----cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCc
Confidence            8777777777 77899999998875 1          1    455678889999999999999887764 6789999999


Q ss_pred             EEEEEeHHHHHHHH
Q 024256          153 VVDVVDVIHITHAA  166 (270)
Q Consensus       153 ~~Givt~~dll~~~  166 (270)
                      ++|+++...++.++
T Consensus       369 ~vG~i~~~~vl~aL  382 (386)
T COG4175         369 YVGIISRGELLEAL  382 (386)
T ss_pred             EEEEecHHHHHHHH
Confidence            99999999999874

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.19  E-value=3.1e-05  Score=69.51  Aligned_cols=151  Identities=22%  Similarity=0.236  Sum_probs=91.7

Q ss_pred             cEEEEEeCCEEEEEeeHHHHHHH--------HHhcCCC---CCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEE
Q 024256           77 SSAVVTVENKPRGILTSKDILMR--------VISQNLP---ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP  145 (270)
Q Consensus        77 ~~i~Vv~~~~~~Givt~~dl~~~--------~~~~~~~---~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lp  145 (270)
                      +.+.+.++|+++..-+..+++.+        ++.....   .....+.+.|........++.+..++++.|...+.+.+.
T Consensus       198 drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (363)
T TIGR01186       198 DRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSLY  277 (363)
T ss_pred             CEEEEEeCCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCceEE
Confidence            56777778888877787777521        1111000   001122223333444566777899999999999999999


Q ss_pred             EEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccC
Q 024256          146 VVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSY  225 (270)
Q Consensus       146 Vvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~  225 (270)
                      |+|+++++.|+++..++..+.-.     .....+.    .   ......+.    ...+.++++..+..           
T Consensus       278 ~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~----~---~~~~~~~~----~~~~~~~~~~~~~~-----------  330 (363)
T TIGR01186       278 VVDRQNKLVGVVDVESIKQARKK-----AQGLQDV----L---IDDIYTVD----AGTLLRETVRKVLK-----------  330 (363)
T ss_pred             EEcCCCCEEEEEeHHHHHHHhhc-----CCchhhh----h---ccCCceEC----CCCcHHHHHHHHHh-----------
Confidence            99999999999999998865211     0111110    0   00011111    11334444444411           


Q ss_pred             CCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          226 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       226 p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                              .....+|+|++|++    +|+||..++++++..
T Consensus       331 --------~~~~~~v~~~~~~~----~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       331 --------AGIKVPVVDEDQRL----VGIVTRGSLVDALYD  359 (363)
T ss_pred             --------CCCCEEEECCCCcE----EEEEEHHHHHHHHHh
Confidence                    11127899999999    999999999999865

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.09  E-value=1.3e-05  Score=48.83  Aligned_cols=46  Identities=30%  Similarity=0.472  Sum_probs=41.9

Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +.++++++++.++++.|.+.+.+.+||++++++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            5678999999999999999999999999987899999999999764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.83  E-value=7.2e-05  Score=45.42  Aligned_cols=43  Identities=35%  Similarity=0.423  Sum_probs=39.9

Q ss_pred             eeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHH
Q 024256           55 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL   97 (270)
Q Consensus        55 ~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~   97 (270)
                      ++++.+++++.++++.|.+.+...+||++ +++++|+++..++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~   45 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDII   45 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHH
Confidence            57789999999999999999999999999 68999999999996

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.33  E-value=0.0012  Score=59.74  Aligned_cols=105  Identities=18%  Similarity=0.130  Sum_probs=73.4

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeee
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  123 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v  123 (270)
                      +..++|.+  ....... +.. .+++.   ++.+.+.|++.    |+++..+.. .+....   ....+.+ +.....++
T Consensus       275 ~a~~~m~~--~~~~~~~-~~~-~~~~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~---~~~~~~~-~~~~~~~~  338 (382)
T TIGR03415       275 TARSLMRP--LTDLEHV-DGG-WCVSD---RRDTWLFTIDK----QVRRRDAKL-PVQAWA---AEQEVES-LEAAPTVI  338 (382)
T ss_pred             eHHHHhcc--ccccccc-Ccc-hhhhh---cccceeEeecc----ceecccchH-hHhhcc---cccchhh-hcccCccc
Confidence            56888863  2222222 223 44444   67888888877    788877764 433311   1234666 55678889


Q ss_pred             cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++++++.+++..+.+.+. -+||+|+ |+++|+|+..+++.++
T Consensus       339 ~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       339 NPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHAL  379 (382)
T ss_pred             CCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHH
Confidence            999999999999988765 5788885 9999999999999863

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.23  E-value=0.0011  Score=57.50  Aligned_cols=101  Identities=17%  Similarity=0.056  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHH--------HHHHhcCCCCCccchhhccCC--CCeeecCCCCH
Q 024256           60 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQNLPADSTLVEKVMTP--NPECATIDTPI  129 (270)
Q Consensus        60 ~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~--------~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l  129 (270)
                      -+..+.||+++     -+++.+..+|+++-+=|..+|+        +.++.+-....-.+.+++|.+  ....-.+....
T Consensus       221 itHDLdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~  295 (386)
T COG4175         221 ITHDLDEALRI-----GDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGP  295 (386)
T ss_pred             EecCHHHHHhc-----cceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhccccccccccccccc
Confidence            35667777776     2678888899999999999987        122222111222467888874  22222233344


Q ss_pred             HHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          130 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       130 ~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..++..+.+...+.+.+++..++.+|+++..++...
T Consensus       296 ~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~  331 (386)
T COG4175         296 RVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA  331 (386)
T ss_pred             chhhhhhhhccchhhHHHhccCceeeEEeccchhcc
Confidence            567888888887788888877789999999888764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.08  E-value=0.0062  Score=51.44  Aligned_cols=103  Identities=19%  Similarity=0.072  Sum_probs=71.2

Q ss_pred             ECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHH--------HHHHhcC----CCCCccchhhccCCCC----e
Q 024256           58 ISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQN----LPADSTLVEKVMTPNP----E  121 (270)
Q Consensus        58 v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~--------~~~~~~~----~~~~~~~v~~im~~~~----~  121 (270)
                      +.-+..+.||+++     -+.+.|.++|+++-+=++.+++        +.++..+    .......+.+.|.+..    -
T Consensus       190 vfVTHDidEA~kL-----adri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~  264 (309)
T COG1125         190 VFVTHDIDEALKL-----ADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGE  264 (309)
T ss_pred             EEEecCHHHHHhh-----hceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCC
Confidence            3345677888887     3678889999999999987776        2222211    1112345555554422    1


Q ss_pred             eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .+.......+++..+...+...+||+|++|+++|.+|..+|+..
T Consensus       265 ~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         265 PLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             ccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            23344455668888888899999999999999999999999864

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.00046  Score=61.24  Aligned_cols=110  Identities=15%  Similarity=0.196  Sum_probs=71.7

Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhc
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMA  194 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (270)
                      .+|+++.|+.++.++++....+++..+||..+   .++++|+||.+|+-..     ++....+++    ++.    ...+
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-----~~~~~~~~~----vmt----~~~~  182 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-----EDNSLLVSD----VMT----KNPV  182 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----hcccchhhh----hcc----cccc
Confidence            36778999999999999999999999999963   2589999999998753     222222221    110    0001


Q ss_pred             cCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhh
Q 024256          195 LSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTN  265 (270)
Q Consensus       195 ~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~  265 (270)
                      ..   ..+++..+....+....--                  -++|||++|.+    |-++++.|+.++-.
T Consensus       183 ~~---~~gi~l~~~neiL~~~kkG------------------kl~iv~~~gel----va~~~rtDl~k~~~  228 (503)
T KOG2550|consen  183 TG---AQGITLKEANEILKKIKKG------------------KLPVVDDKGEL----VAMLSRTDLMKNRD  228 (503)
T ss_pred             cc---cccccHHHHHHHHHhhhcC------------------CcceeccCCce----eeeeehhhhhhhcC
Confidence            11   1123343333333211110                  27799999999    99999999988654

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=96.85  E-value=0.0033  Score=58.74  Aligned_cols=125  Identities=14%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             hhCCCCccccccCCCceeEECCCCCHH-HHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCCCccchhh
Q 024256           39 RMFRPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEK  114 (270)
Q Consensus        39 ~~~~~~v~~im~~~~~~~~v~~~~tv~-~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  114 (270)
                      .+....++++|+|..+++.++.+..+. +......+++++++||.+   ...+.|.+....+  ++..........++..
T Consensus       200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~  277 (498)
T KOG2118|consen  200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSE  277 (498)
T ss_pred             HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchh
Confidence            344667999999988999999999998 555566689999999998   2334444444443  5554433445678899


Q ss_pred             ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       115 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      .+......+++++++.+.++.|++.+.+.+.|.+ ...-+|+++..|+ ....
T Consensus       278 ~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~  328 (498)
T KOG2118|consen  278 SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV  328 (498)
T ss_pred             hhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence            9988999999999999999999988766666655 6678999999998 6544

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.77  E-value=0.0011  Score=62.00  Aligned_cols=58  Identities=16%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-----CcEEEEEeHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD-----GDVVDVVDVIHITHAA  166 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----g~~~Givt~~dll~~~  166 (270)
                      ...++++|.+++++++.-+.+..+.+.++..+.+..||+|+.     +++.|+|-++.++..+
T Consensus       581 ~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL  643 (762)
T KOG0474|consen  581 NLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL  643 (762)
T ss_pred             hhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999953     4789999888877654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.96  E-value=0.049  Score=49.37  Aligned_cols=78  Identities=12%  Similarity=0.089  Sum_probs=45.3

Q ss_pred             cEEEEEeCCEEEEEeeHHHHHH--------HHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEe
Q 024256           77 SSAVVTVENKPRGILTSKDILM--------RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD  148 (270)
Q Consensus        77 ~~i~Vv~~~~~~Givt~~dl~~--------~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd  148 (270)
                      +.+.++++|+++..-+..+++.        .+........-.++.++|.+.......+-+  .+++.   ++...+.|+|
T Consensus       233 DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~  307 (382)
T TIGR03415       233 NRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTID  307 (382)
T ss_pred             CEEEEEECCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEeec
Confidence            4566666778777767776641        111111112234678899544333343333  44444   6788999998


Q ss_pred             CCCcEEEEEeHHHHHH
Q 024256          149 RDGDVVDVVDVIHITH  164 (270)
Q Consensus       149 ~~g~~~Givt~~dll~  164 (270)
                      .     |+++..+...
T Consensus       308 ~-----~~~~~~~~~~  318 (382)
T TIGR03415       308 K-----QVRRRDAKLP  318 (382)
T ss_pred             c-----ceecccchHh
Confidence            5     8888766544

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.32  E-value=0.074  Score=50.09  Aligned_cols=49  Identities=24%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             CeeecCC-CCHHHHHHHhHhCCCCEEEEEeC--CCcEEEEEeHHHHHHHHHH
Q 024256          120 PECATID-TPIVDALHIMHDGKFLHLPVVDR--DGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       120 ~~~v~~~-~~l~~a~~~~~~~~~~~lpVvd~--~g~~~Givt~~dll~~~~~  168 (270)
                      ...++.+ +++++...+|.+..++..||+-+  ..+++|++.++|+...+..
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~  609 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILN  609 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhh
Confidence            4556655 89999999999999988888742  4689999999999987543

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.90  E-value=0.23  Score=47.99  Aligned_cols=58  Identities=12%  Similarity=0.076  Sum_probs=50.0

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHH
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVI  101 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~  101 (270)
                      +...|+++|.  +++..+..+.|..|..+.+.......+|+++   +..++|.|.++.+. .++
T Consensus       586 h~v~VE~iMV--~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~-~ll  646 (931)
T KOG0476|consen  586 HTVKVEHIMV--TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLT-ALL  646 (931)
T ss_pred             eEEEeeeecc--ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHH-HHH
Confidence            4457899999  8999999999999999998877799999998   35689999999987 444

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.47  E-value=0.061  Score=37.74  Aligned_cols=32  Identities=31%  Similarity=0.502  Sum_probs=28.6

Q ss_pred             eeEEeecCCCCeeEeecC-CCChHHHHHhhhhh
Q 024256          236 FAFKVQDNKGLMHRFTCG-MLPFPNFIEVTNYE  267 (270)
Q Consensus       236 ~~~~VvD~~g~l~~~~vG-ivs~~Dil~~i~~~  267 (270)
                      |.||..+.+|++|||+++ --++.++.++|...
T Consensus         1 f~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~R   33 (86)
T cd06409           1 FAFKFKDPKGRVHRFRLRPSESLEELRTLISQR   33 (86)
T ss_pred             CcEEeeCCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence            358999999999999999 99999999998764

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.38  E-value=0.053  Score=45.96  Aligned_cols=97  Identities=19%  Similarity=0.172  Sum_probs=66.6

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCC----CCChhHHHHHHHHh-------hCCCCccccccCCC--ceeEECCCCCHHHH
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTS----ISGPNTFIETLRER-------MFRPSLSTIIPEKS--KVVTISPTDTVLMA   67 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~-------~~~~~v~~im~~~~--~~~~v~~~~tv~~a   67 (270)
                      |+.|...++.+++..+|-..+++..    ..+.+++.+.+...       +...++.+.|.+..  +--.+....+-.++
T Consensus       196 idEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (309)
T COG1125         196 IDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDA  275 (309)
T ss_pred             HHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHH
Confidence            5677778888888888877777642    34456777776421       12335666666311  11223444555678


Q ss_pred             HHHHHHCCCcEEEEEe-CCEEEEEeeHHHHH
Q 024256           68 TKKMLELRLSSAVVTV-ENKPRGILTSKDIL   97 (270)
Q Consensus        68 ~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~   97 (270)
                      +..+...+.+.+||+| +|+++|.+|..+++
T Consensus       276 ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~  306 (309)
T COG1125         276 LSDFLARGRSVLPVVDEDGRPLGTVTRADLL  306 (309)
T ss_pred             HHHHHhcCCceeEEECCCCcEeeEEEHHHHh
Confidence            8888888999999999 99999999999986

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=89.18  E-value=0.59  Score=45.26  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC--cEEEEEeHHHHHHHHHHHhCCCC
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG--DVVDVVDVIHITHAAVATVGNTA  174 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g--~~~Givt~~dll~~~~~~~~~~~  174 (270)
                      ...+.++|.+++.++..++|..|.-+.+.....+.+|+||..+  -++|.|.++.|...+-..++.++
T Consensus       587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~~  654 (931)
T KOG0476|consen  587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPEP  654 (931)
T ss_pred             EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCccH
Confidence            3578999999999999999999999888887789999998543  58999999999988766665433

>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=84.60  E-value=0.3  Score=39.04  Aligned_cols=31  Identities=32%  Similarity=0.399  Sum_probs=27.4

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHH
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETL   36 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   36 (270)
                      |+.+++.+|+++++++|     |+|++|.|-++++-
T Consensus        55 MDtVtea~mAi~ma~~G-----GIGVih~nm~~~e~   85 (170)
T COG0516          55 MDTVTEARMAIAMARDG-----GIGVMHGNMLAEES   85 (170)
T ss_pred             HHHHHHHHHhHHHHHcC-----CeEEEeccccHhhC
Confidence            78999999999999999     99999999776433

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=80.39  E-value=15  Score=32.58  Aligned_cols=35  Identities=9%  Similarity=-0.040  Sum_probs=28.1

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM   40 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   40 (270)
                      |+++.+.+|+.+++..|     +.+.+|.+--+++..++.
T Consensus        53 Mdtv~~~~mA~~la~~g-----~~~~iHk~~~~e~~~~~v   87 (343)
T TIGR01305        53 MDTVGTFEMAAALSQHS-----IFTAIHKHYSVDEWKAFA   87 (343)
T ss_pred             CCcccCHHHHHHHHHCC-----CeEEEeeCCCHHHHHHHH
Confidence            89999999999999999     999999864444444433

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	4e-30
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	7e-04
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	6e-30
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-04
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-28
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-05
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-28
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-05
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	5e-27
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	3e-05
1pvm_A	184	Conserved hypothetical protein TA0289; structural	8e-27
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-06
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-04
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	7e-26
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	2e-06
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-24
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-05
1pbj_A	125	Hypothetical protein; structural genomics, domain,	6e-05
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	6e-23
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	3e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-22
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	4e-22
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	7e-22
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-21
3fio_A	70	A cystathionine beta-synthase domain protein fused	2e-21
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	5e-21
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-07
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	8e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	9e-21
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	6e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-20
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-20
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-17
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-08
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-04
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-19
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	8e-09
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-18
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-18
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-17
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-04
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-18
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	7e-18
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	6e-08
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	6e-04
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	7e-18
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	9e-18
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-15
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	5e-08
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-06
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-17
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	8e-08
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	4e-17
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-06
1vr9_A	213	CBS domain protein/ACT domain protein; structural	8e-17
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-07
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-16
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-15
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-14
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-12
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-04
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	6e-14
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-12
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-11
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	6e-12
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-09
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	1e-10
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	1e-09
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	3e-09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	3e-08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	8e-08
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	2e-07
2oux_A	286	Magnesium transporter; 10001B, structural genomics	2e-07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	4e-07
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	4e-07
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	5e-07
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	6e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	6e-07
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	9e-07
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-04
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	9e-04

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  110 bits (276), Expect = 4e-30
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 27  SGPNTFIETLRERMFRPSLSTIIPE-----KSKVVTISPTDTVLMATKKMLELRLSSAVV 81
           S  +    + RE ++   ++T + +        VVT+ P  ++  A   +   ++ + VV
Sbjct: 4   SHHHHHHSSGRENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVV 63

Query: 82  T-VENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGK 140
           T  +    GI T +D++  V  Q   +    V   MT N      ++     + IM  G+
Sbjct: 64  TDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGR 123

Query: 141 FLHLPVVDRDGDVVDVVDVIHITHAAVA 168
           F H+PV + +G +  ++ +  +  A + 
Sbjct: 124 FRHVPVEE-NGRLAGIISIGDVVKARIG 150

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 10/59 (16%), Positives = 18/59 (30%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 111
             VV      T     + M   R     V    +  GI++  D++   I +       +
Sbjct: 101 KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHI 159

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  108 bits (272), Expect = 6e-30
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 114
           VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V++
Sbjct: 19  VVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKE 78

Query: 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 168
           +MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 79  IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 104
            +V  +   +T       + E+R+    V  + K  G+L+  D++   ISQ+
Sbjct: 82  RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQH 133

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  106 bits (266), Expect = 1e-28
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 28  GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKP 87
           GP +   T+ + +     S        + T++  D V  A K M E  + + +V   +  
Sbjct: 1   GPGSMSTTVAQILKAKPDSG-----RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDI 55

Query: 88  RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 147
            GI+T +D   +V+ Q   + +T VE++MT             + + +M + +  HLPV+
Sbjct: 56  AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVL 115

Query: 148 DRDGDVVDVVDVIHITHAAVA 168
           D  G ++ ++ +  +  + +A
Sbjct: 116 D-GGKLIGLISIGDLVKSVIA 135

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
           +KV  + P+ +       M E R+    V    K  G+++  D++ + +  +     + +
Sbjct: 86  AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLV-KSVIADQQFTISQL 144

Query: 113 EKVMTPNPECATI 125
           E  +   P   ++
Sbjct: 145 EHYIHGTPSVTSV 157

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  104 bits (263), Expect = 2e-28
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 111
            K++ + P+ +V  A++ M+E  + S VV  ++    G  T  DI+ RVI   LP D   
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IP 73

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 171
           VE++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+   + 
Sbjct: 74  VERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRLE 132

Query: 172 NTAGS 176
               +
Sbjct: 133 TAISA 137

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 154
              ++  MT         T + +A  +M +     L V++ DG+VV
Sbjct: 6   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVV 51

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score =  100 bits (252), Expect = 5e-27
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
           ++V++++    +    K M E  + S +V   NKP GI+T +DI+ + I +    + T  
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSLE-TKA 69

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           E+ MT +      D+PI  AL +M      HLPVVD  G++  ++
Sbjct: 70  EEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGII 114

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 17/96 (17%)

Query: 108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 161
           +  +V++ M       T D  + D   +M +     + VVD     V      D+V  I 
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIG 60

Query: 162 ITHAAVATVGN-------TAGSN---NEAASTMMQK 187
              +              T   +     A + M Q 
Sbjct: 61  KGKSLETKAEEFMTASLITIREDSPITGALALMRQF 96

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score =  102 bits (255), Expect = 8e-27
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 111
           S   T++   TV  A K M E  L   VV  +N    G+L+ + I+ R I +N   D   
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 76

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 154
           +  VM         D  + D    + +       VVD  G VV
Sbjct: 77  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVV 119

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           VEK+M  N +    +T + DA+ IM++     L V D +G+ V ++
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLL 56

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 111
             +  +     V      + E  L    VV    +  GI+T  D+  R +S+    D  L
Sbjct: 83  KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS-RYLSRASITDILL 141

Query: 112 VEKV 115
             + 
Sbjct: 142 SHRT 145

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 98.0 bits (245), Expect = 7e-26
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 111
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 76  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 120

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 9/52 (17%), Positives = 16/52 (30%)

Query: 106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           P   T    +M     C      +  A   M +     LP+   D  +  ++
Sbjct: 4   PFTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGML 55

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 104
             +  +    ++      M E ++    V  E++  GI+T  DI  R + ++
Sbjct: 82  DSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA-RHLPEH 132

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 93.3 bits (233), Expect = 3e-24
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+L   I++        V
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKV 67

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
            +VM  +    +    I +A   M       L V + D +++ V+
Sbjct: 68  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVI 111

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 31/51 (60%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 103
             +VTISP  T+  A +KM++  +   +V  +++  G++++ DIL   +++
Sbjct: 73  RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAK 123

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 154
            VE VM  + +   I   + D L    +       VV  +G  V
Sbjct: 2   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRV 44

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 90.4 bits (225), Expect = 6e-23
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---KPRGILTSKDILMRVISQNLPAD 108
           K   V++  T T+     ++ + R+  AV+T  +   +P  +++ +DIL R ++Q L  D
Sbjct: 12  KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDLD 70

Query: 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                 +   +P       P+  A   M      H+ VV+++G++V V+
Sbjct: 71  -GPAMPIAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVL 117

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 4/44 (9%), Positives = 12/44 (27%)

Query: 109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 152
           +    +++   P        I +    +   +     +  RD  
Sbjct: 4   AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNP 47

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 88.5 bits (220), Expect = 4e-22
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 111
           S  V I    +V  A   M    + +  V   +    G+L+ KD+L   I Q     S  
Sbjct: 24  SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQEL-TSVP 82

Query: 112 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 163
           V  +MT  P       +  ++D    + + +   LPV+       +V+  +  T
Sbjct: 83  VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT 136

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 87.8 bits (218), Expect = 7e-22
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 30  NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPR 88
           N  I   ++   +  +  ++    KV  +   + +  A   +++   S+  V+    K  
Sbjct: 2   NAMISIPKDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLH 61

Query: 89  GILTSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 144
           G++++  IL  ++          +   VE+VM  +     ++     AL +  D  F  +
Sbjct: 62  GLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--I 119

Query: 145 PVVDRDGDVV 154
             V+ DG   
Sbjct: 120 CAVNEDGYFE 129

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 87.5 bits (217), Expect = 1e-21
 Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 33  IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 91
           +        + ++   +    KV  + P + +  A   + +   S+  V+    K  G++
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 92  TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 147
           +   ++  ++          ++  VE+VM  N     +D  ++ A+ ++ +  F  + V 
Sbjct: 61  SMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVE 118

Query: 148 DRDGDVV 154
           + DG   
Sbjct: 119 NDDGYFA 125

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 85.4 bits (212), Expect = 5e-21
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 111
             V+T    + V+ A +KML+ ++SS  V+  ENK  GI+T+ DI   +I      ++T 
Sbjct: 16  KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETT- 74

Query: 112 VEKVMTPNPECATIDTPIVDALHIM-----HDGKFLHLPVVDRDGDVV 154
           +  VMT +      D  I++A+  M      +     LPVVD++  +V
Sbjct: 75  IGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLV 122

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
            +  V+ VMT N   A     +V+A   M   K   LPV+D +  V+ +V
Sbjct: 6   KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIV 55

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDILMRVISQ 103
             V+TI    ++L A KKM              VV   NK  GI++  DI+ R IS+
Sbjct: 81  KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII-RTISK 136

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 85.2 bits (211), Expect = 9e-21
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 33  IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 91
           I    +++   ++   + E  KV  +   + +  A   + +   ++  V+    +  G++
Sbjct: 4   ISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63

Query: 92  TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 147
            +  I+  +           D   VE+VM  +     I+ PI+    ++ +  F  + V 
Sbjct: 64  GTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVE 121

Query: 148 DRDGDVVDVV 157
           + +     + 
Sbjct: 122 NDEQVFEGIF 131

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 112 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
           V + M    + A +     +  AL ++    +  +PV+D    +  ++    I ++
Sbjct: 16  VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNS 71

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 86.4 bits (214), Expect = 4e-20
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---------Q 103
                +S  D +  A KK+ E  +   +V    K  G+LT++D+L  V S          
Sbjct: 28  KNPPILSKEDRLGSAFKKINEGGIGRIIV-ANEKIEGLLTTRDLLSTVESYCKDSCSQGD 86

Query: 104 NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                +T +   MTPNP      +    A++IM    F  LPVVD +   V +V
Sbjct: 87  LYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIV 140

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 86.0 bits (213), Expect = 6e-20
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 111
              VT+  T     A   M+     S  VV + +KP GI+T ++ L+     +   +   
Sbjct: 101 PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD---EIFP 157

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAVA 168
           V+  M+   +    +  +  A+ +M    F  LPV+D D  VV +V   + I     AV 
Sbjct: 158 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD 217

Query: 169 TVGNTAGSNNEAASTM 184
            +             M
Sbjct: 218 KLDPDYFYGKVVKDVM 233

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 78.7 bits (194), Expect = 3e-17
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD--- 108
           +KV TI     +  A K ML        V+  +NK  GI+T  + + ++       D   
Sbjct: 164 TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDY 223

Query: 109 --STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
               +V+ VM  N         +  A   M   +   L ++++D  +  ++    +  A
Sbjct: 224 FYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA 282

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 91  LTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 150
           + S  I      +NL      +E +M  NP   + +  +  A   +++G    + V   +
Sbjct: 1   MGSDKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA--N 58

Query: 151 GDVV------DVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEED 203
             +       D++  +        + G+    +       M     + + +    DE  
Sbjct: 59  EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP---NPVTVYNTSDEFT 114

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDIL 97
            + +VTI    +V  A  +M+  R+ S  ++  +N  RGI+T +D+L
Sbjct: 234 VTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 280

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 79.9 bits (198), Expect = 4e-19
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 111
              +T     +++ A K +++  ++   +V    K  GI+TS DI   +           
Sbjct: 9   KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKT----- 63

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 161
           +E++MT N   A  D P+      M       +PVVD    VV      D+  +  
Sbjct: 64  IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG 119

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 51.7 bits (125), Expect = 8e-09
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 154
           TLV+ +++  P  A  +  I++A  I+      HLP+VD  G +V
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLV 45

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 7/140 (5%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 111
             V+T+     +  A +  L   +  A +V  EN+   ++T +D++  ++ +    +   
Sbjct: 92  ENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV-- 149

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAVA 168
           ++  +T +   AT    + D    M    F  LPVV  +G +V ++   D I +  +  A
Sbjct: 150 IDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGSDWA 208

Query: 169 TVGNTAGSNNEAASTMMQKF 188
                 G+  E  +  M++ 
Sbjct: 209 FNHMQTGNVREITNVRMEEI 228

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 80.2 bits (198), Expect = 7e-18
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVE--NKPRGILTSKDIL------------- 97
            K+VT+ PT T+  A   M E +     V     NK  GI+TS DI+             
Sbjct: 12  KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIR 71

Query: 98  MRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
            +     L A +  V ++M  N      +  I +A+           P+V+ +  ++ ++
Sbjct: 72  EKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLI 131

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ--------- 103
             V+  +P + +    + M+        V  E +  GI+TS D +  + S          
Sbjct: 156 RDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTG 215

Query: 104 -NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                 +  +E++M  +   A     +     IM       LPVVD +  +  ++
Sbjct: 216 NVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGII 270

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD----VVDVVDVIHITH 164
           +++             T I  AL  M++ K+  LPVV+   +    ++  +D++    
Sbjct: 5   VMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMG 62

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVIS 102
           K  V+T    D +    + M+   + +  V  EN + +GI+T KD+L +  +
Sbjct: 230 KRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL-KYFA 280

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 78.4 bits (194), Expect = 2e-18
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 111
             + +   T  V+   + + + R+SS  ++        +  + D+L  +        S  
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 78

Query: 112 VEKVMT------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 160
           V + +             T +  +   +  +   +     VVD  G +V V+   D++
Sbjct: 79  VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 162
           +  +   N +   + TP++D + ++  G+   +P++D +G +++V    DV+ +
Sbjct: 13  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 77.4 bits (191), Expect = 7e-18
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL-------MRVISQN 104
               T+  T T+  A   M  L +    +V    K  GI++ +D+L        R    +
Sbjct: 13  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 72

Query: 105 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 154
             A  T + +VM  +         + ++   M   K   LPVV     +V
Sbjct: 73  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLV 121

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
            VE +MT +P        + DA H+M      H+P+VD +  ++ +V
Sbjct: 6   KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIV 52

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 9/67 (13%), Positives = 28/67 (41%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
           + V +++P   +  +   M + ++    V  ++   GI+T  D +   I+     + +  
Sbjct: 86  TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQEESEP 145

Query: 113 EKVMTPN 119
           +++    
Sbjct: 146 DELDEEQ 152

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 77.8 bits (192), Expect = 7e-18
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 30/140 (21%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP---- 106
           +  +  + P+ +V  A + ++E +++   V+       G+++  D+L             
Sbjct: 13  RQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDT 72

Query: 107 ----------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 144
                                     +V  +MTP+P      T + DA  ++ + KF  L
Sbjct: 73  NLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRL 132

Query: 145 PVVDRDGDVVDVV---DVIH 161
           PVVD DG ++ ++   +V+ 
Sbjct: 133 PVVDADGKLIGILTRGNVVR 152

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 111
              + +  +  +  A + +LE +     VV  + K  GILT  +++   +     ADS  
Sbjct: 106 PSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNADSIS 165

Query: 112 VEKVMTPN 119
                  N
Sbjct: 166 GRSQNDTN 173

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 79.8 bits (197), Expect = 9e-18
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
            VTI+   T   A +   + ++ S  VV  E K  GI++ K IL       +  D   + 
Sbjct: 11  PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-------VNPDEEQLA 63

Query: 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 154
            ++  +      +  +  A  +M +  +  + VVD  G  V
Sbjct: 64  MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPV 104

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 71.7 bits (176), Expect = 8e-15
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 4/136 (2%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADST 110
           K  V  +   DT+  A K MLE       VV  + KP GILT  DI+ R  +++      
Sbjct: 67  KRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGV 126

Query: 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD---VVDVVDVIHITHAAV 167
            +E             TP+  AL  +     + LPVVD +G+   +VD  D++  +    
Sbjct: 127 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 186

Query: 168 ATVGNTAGSNNEAAST 183
                   +++E    
Sbjct: 187 IMKSTELAASSEEEWI 202

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 30/131 (22%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVV-TVENKPRGILTSKDIL--------------- 97
            V  +     +  A K +L     +  V   E    GI+   D+L               
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELA 194

Query: 98  --------------MRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLH 143
                         +      L   +  V ++MT +   AT    + +    M       
Sbjct: 195 ASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQ 254

Query: 144 LPVVDRDGDVV 154
           LPV+  +GD++
Sbjct: 255 LPVIRGEGDLI 265

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           V+ +MT NP   T+      AL +    K    PVV+++G +V ++
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGII 48

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 76.9 bits (190), Expect = 1e-17
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP----- 106
            K   +     +     ++LE  ++    V  +NK  G++    +L              
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 83

Query: 107 ---------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V  +
Sbjct: 84  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 142

Query: 158 ---DVIH 161
              +++ 
Sbjct: 143 NSLEILL 149

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 162
           V K+++  P     DTPI + +  + +        V RD  +V ++    ++ +
Sbjct: 18  VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV 71

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 75.9 bits (187), Expect = 8e-17
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 21/145 (14%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
               +  + TV     +M + + +   V   E   RG++  +D+L            + V
Sbjct: 22  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSV 74

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHAA 166
              ++        +  I  AL +  + +  +LPVVD +  +       D ++ +    A 
Sbjct: 75  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAM 134

Query: 167 -------VATVGNTAGSNNEAASTM 184
                     + +  G   +    +
Sbjct: 135 DVPGIRFSVLLEDKPGELRKVVDAL 159

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
            V+K +T +         + + LH M   +     V DR+G    VV
Sbjct: 14  KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVV 60

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 71.7 bits (176), Expect = 5e-16
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 111
           ++     +   +   A +++     + A V    +  G++    +L     +  P     
Sbjct: 12  ETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE--GRKGWPTVKEK 69

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           + + +            + D L  +   K   +P+ D DG    VV
Sbjct: 70  LGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVV 115

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 72.7 bits (178), Expect = 5e-15
 Identities = 16/118 (13%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLP----- 106
           + +  +  T  V +A    ++ R+S+  VV  + +   I +  D++     +        
Sbjct: 201 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS 260

Query: 107 -ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 160
              +               +   +   ++ + + +   L VVD    V  +V   D++
Sbjct: 261 VTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 70.0 bits (171), Expect = 5e-14
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 29  PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENK 86
           P +        M       +IP  SK+V    +  V  A   ++   + +A +  + +  
Sbjct: 21  PESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS 80

Query: 87  PRGILTSKDILMR--------------VISQNLPADSTLVEKVMTPNPECATIDTPIVDA 132
             G+LT  D +                +    +     +  +       C + +  + DA
Sbjct: 81  FVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDA 140

Query: 133 LHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 165
           +  +   K   LPV+D + G+ + ++    I   
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 174

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 63.4 bits (154), Expect = 7e-12
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENKPRGILTSKDILMRV--------I 101
              +V ISP  ++  A   ++  ++    V          ILT K IL  +         
Sbjct: 125 FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPK 184

Query: 102 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 161
            + +      ++     N       TP+  AL I    +   LPVVD  G VVD+     
Sbjct: 185 PEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFD 244

Query: 162 ITHAA 166
           + + A
Sbjct: 245 VINLA 249

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 44  SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVIS 102
           +L         V+     +T+     +++E  +    VV   +  +GI++  DIL  ++ 
Sbjct: 264 ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL 323

Query: 103 QNLPAD 108
                 
Sbjct: 324 TGGEKK 329

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 69.6 bits (170), Expect = 6e-14
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 10/133 (7%)

Query: 38  ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDI 96
             +  P     I  +  + +   T  V+   + + + R+SS  ++        +  + D+
Sbjct: 183 HFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 242

Query: 97  LMRVISQNLPADSTLVEKVMT------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 150
           L  +        S  V + +             T +  +   +  +   +     VVD  
Sbjct: 243 LGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV 302

Query: 151 GDVVDVV---DVI 160
           G +V V+   D++
Sbjct: 303 GRLVGVLTLSDIL 315

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 65.7 bits (160), Expect = 1e-12
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 19/153 (12%)

Query: 30  NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR- 88
              +E++R+ +   +   ++P   +++ +  +  V  +   +L+  + SA +      R 
Sbjct: 17  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76

Query: 89  -GILTSKDILMRVISQNLPADSTL----------------VEKVMTPNPECATIDTPIVD 131
            G+LT+ D +  VI                             V   +        P+ +
Sbjct: 77  AGLLTTTDFI-NVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFE 135

Query: 132 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164
           A   M + +   +P++D+D +    + V  +T 
Sbjct: 136 ACLKMLESRSGRIPLIDQDEETHREIVVSVLTQ 168

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 61.5 bits (149), Expect = 4e-11
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 21  HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAV 80
            +  S       ++ L+    +     +  ++    +I P+  +  A  KMLE R     
Sbjct: 90  QYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIP 149

Query: 81  V------TVENKPRGILTSKDILMRVIS-----QNLPADSTLVEKVMTPNPECATIDTPI 129
           +      T       +LT   IL  V         L      +  +   N +   + TP+
Sbjct: 150 LIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPV 209

Query: 130 VDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHA 165
           +D + ++  G+   +P++D +G +++V    DV+ +   
Sbjct: 210 IDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 248

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 63.7 bits (155), Expect = 6e-12
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTL 111
           S + T S    V    K + E  +S+  +V  E     +  S D++  +   +       
Sbjct: 193 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLS 252

Query: 112 VEKVMTPNPE------CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
           V + +   P              +      +   +   L VVD +  +  ++
Sbjct: 253 VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGIL 304

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 16/158 (10%)

Query: 21  HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR----- 75
           +  +S       I+  R    R     I     + + + P  +++ A   M + R     
Sbjct: 85  YQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIP 144

Query: 76  -LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV------MTPNPECATIDTP 128
            +     T       +LT   IL + IS N    + L   +         N   A+++T 
Sbjct: 145 LIDVDGETGSEMIVSVLTQYRIL-KFISMNCKETAMLRVPLNQMTIGTWSNLATASMETK 203

Query: 129 IVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 163
           + D + ++ +     +P+V+ +G +++V    DV+H+ 
Sbjct: 204 VYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI 241

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 48  IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENKPRGILTSKDILMRVI---- 101
           ++P   +++    T  V  +   +    + SA +  +  NK  G+LT  D +  +     
Sbjct: 27  VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQ 86

Query: 102 SQNLPADSTLVEK--------------VMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 147
           S + P     ++K               + P          ++DA   M   +   +P++
Sbjct: 87  SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146

Query: 148 DRDGDVVDVVDVIHITHAAV 167
           D DG+    + V  +T   +
Sbjct: 147 DVDGETGSEMIVSVLTQYRI 166

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 58  ISPTDTVLMATKKMLELRL-SSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 116
           +    T+  A  ++    L  +A+   +    GI T  D L RV    +      +  VM
Sbjct: 43  VGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGD-LRRVFDTGVDMRDASIADVM 101

Query: 117 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 162
           T         T  VDAL++M       + V D D     ++ V+H+
Sbjct: 102 TRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDH----LLGVVHM 143

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 56  VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV 115
           +TI+P +TV  A   M +  +    V  + K  GI+T KD  +         +  LV+++
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKD--IAAR------EGKLVKEL 155

Query: 116 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 151
           MT           + +AL IM + +   LPVVD  G
Sbjct: 156 MTKEVITVPESIEVEEALKIMIENRIDRLPVVDERG 191

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 56  VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 111
             + P  T             ++  VT +  P     G++T +D    +         T 
Sbjct: 108 SNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRD--YPIDLTQT---ETK 162

Query: 112 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 151
           V  +MTP  +  T   DT + +A  I+ + K   LP++D D 
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ 204

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 56  VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 114
           VT+ P  T+    +       +   VVT  N+  GI+T +D  +R ++      +  V  
Sbjct: 100 VTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRD--VRFVTD----LTKSVAA 153

Query: 115 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 151
           VMTP    AT+       +    MH  +   + VV+ + 
Sbjct: 154 VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF 192

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 56  VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 114
           +T++P  TV  A   M E ++    VV  E +  G+LT++D  +R         S  ++ 
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRD--VRFEKN----LSKKIKD 159

Query: 115 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 151
           +MTP  +      D  +  A  I+H  +   LP+V +D 
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN 198

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 56  VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 111
           V +SP+ TV    +  +    S   +T          GI+TS+D  +  +++     +TL
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD--IDFLAEK--DHTTL 174

Query: 112 VEKVMTPNPECAT--IDTPIVDALHIMHDGKFLHLPVVDRDGDVV 154
           + +VMTP  E         + +A  I+   K   LP+V+   ++V
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELV 219

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 25/122 (20%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSA---------VVTVENKPRGILTSKDILMRVISQNL 105
            V +    TV      +  LR ++          VV  + + +G+L+ +D+++       
Sbjct: 165 YVAVREGMTVEEV---LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------ 215

Query: 106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDV 159
               T V ++M P       DT   +   +M D  F  LPVVD +G +V      DV+DV
Sbjct: 216 -DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV 274

Query: 160 IH 161
           + 
Sbjct: 275 LE 276

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSA---------VVTVENKPRGILTSKDILMRVISQNL 105
            V+I    TV  A   M  L+  +          VV  EN   G+++ +D+++       
Sbjct: 147 FVSIVANQTVRSA---MYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------ 197

Query: 106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDV 159
             D TL+  ++        +     D    + D  FL +PV D D  ++      D++DV
Sbjct: 198 -DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV 256

Query: 160 IH 161
           I 
Sbjct: 257 ID 258

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 15/137 (10%), Positives = 41/137 (29%), Gaps = 13/137 (9%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNLPADS 109
            +  V +    TV  A   M + R+    V  ++     G++  + ++ +++S N     
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD-------VVDVVDVI-H 161
               K +            +     ++       + ++ ++         +   +DV   
Sbjct: 452 P-AIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTF 508

Query: 162 ITHAAVATVGNTAGSNN 178
           I         N   +  
Sbjct: 509 IAAGKQKPKANGTTNGG 525

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 25/122 (20%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSA---------VVTVENKPRGILTSKDILMRVISQNL 105
            V +    TV      +  LR ++          VV  + + +G+L+ +D+++       
Sbjct: 145 YVAVREGMTVEEV---LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------ 195

Query: 106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDV 159
               T V ++M P       DT   +   +M D  F  LPVVD +G +V      DV+DV
Sbjct: 196 -DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV 254

Query: 160 IH 161
           + 
Sbjct: 255 LE 256

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 23/120 (19%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSA-------VVTVENKPRGILTSKDILMRVISQNLPA 107
           ++ +S   TV  A       R           +V   +K  G +   DI           
Sbjct: 64  MLVLSDKATVAQA---QRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH-------E 113

Query: 108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 161
               +  +++ +    T +T ++DA   +   + + LPV+D  G+++          ++ 
Sbjct: 114 PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVR 173

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 48.4 bits (114), Expect = 6e-07
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 171
           VE +          +  +  A +IM D     +PV D +  ++ ++   +IT   +    
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 172 NTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTA 220
           +   + +  +   +        A + N +EE     G +  A+  A++ 
Sbjct: 69  SNILAKSATSLDNILDT---LSAEAQNINEERKVFPGKVVVAAMQAESL 114

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 49.0 bits (118), Expect = 6e-07
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 56  VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 112
             ++P   V  A + M   R+S   +       K  GI+T++D  MR IS      +  +
Sbjct: 101 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRD--MRFISD----YNAPI 154

Query: 113 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 151
            + MT      A + T +  A  I+H+ +   LP+VD  G
Sbjct: 155 SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG 194

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 56  VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 112
             ++P   V  A   M + R+S   V     E K  GI+T++D  MR I       S  +
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD--MRFIQD----YSIKI 177

Query: 113 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 151
             VMT      A + T + +A  I+   K   LP+VD +G
Sbjct: 178 SDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG 217

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 99  RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDV 156
           R++ +N+ +    VE  M  +      DTP+ + + ++        P+V+      +V +
Sbjct: 2   RILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGI 61

Query: 157 VDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMA 194
           V    +  A  A   + A  + +    ++ +   +   
Sbjct: 62  VQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPV 99

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 13/117 (11%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVV---TVENKPRGILTSKDIL---------MRV 100
             + T++    +    K +    ++   +   T      GI+    ++            
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 101 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
             Q    D         P       +T +  A ++        L V    G  V  V
Sbjct: 81  GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCV 136

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 37  RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 96
            ++  +  L+   P +   +T+    T+  A      L L S  VT   +  G ++  ++
Sbjct: 82  HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEM 141

Query: 97  LMRVISQ--NLPADSTLVE 113
             + IS   N PA    +E
Sbjct: 142 K-KAISNLTNPPAPKEFLE 159

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 38.3 bits (89), Expect = 9e-04
 Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 33/151 (21%)

Query: 46  STIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPR--GILTSKDILMRVIS 102
                +    V    + TV      + E   S   VV      R  G +  +D+++ + +
Sbjct: 18  KPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN 77

Query: 103 QNLPADSTL-----------------------VEKVMTPNPECATIDTPIVDALHIMHDG 139
                D  +                       +  ++  +P   T  TP+   + I    
Sbjct: 78  ARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKL 137

Query: 140 KFLHLPVVDRDGDVV------DVVDVIHITH 164
                 V   +G ++      DV+  I    
Sbjct: 138 GLRQCLVTH-NGRLLGIITKKDVLKHIAQMA 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
3ddj_A	296	CBS domain-containing protein; structural genomics	99.91
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.91
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.91
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.9
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.89
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.88
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.88
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.88
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.88
4esy_A	170	CBS domain containing membrane protein; structural	99.88
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.87
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.87
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.87
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.86
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.86
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.86
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.86
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.86
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.86
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.86
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.86
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.86
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.86
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.85
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.85
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.85
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.84
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.84
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.84
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.84
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.84
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.83
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.83
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.83
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.83
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.83
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.83
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.83
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.82
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.82
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.82
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.82
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.82
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.81
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.81
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.81
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.8
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.79
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.79
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.78
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.78
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.78
3ddj_A	296	CBS domain-containing protein; structural genomics	99.78
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.77
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.75
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.75
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.75
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.73
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.73
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.72
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.71
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.7
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.7
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.69
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.68
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.66
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.63
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.58
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.58
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.56
4esy_A	170	CBS domain containing membrane protein; structural	99.56
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.53
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.53
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.48
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.47
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.47
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.46
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.46
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.46
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.45
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.45
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.43
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.43
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.41
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.41
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.4
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.39
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.39
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.39
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.39
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.37
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.37
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.37
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.37
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.36
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.36
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.35
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.35
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.34
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.34
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.34
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.33
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.33
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.31
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.3
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.28
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.27
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.27
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.26
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.26
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.24
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.21
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.21
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.21
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.2
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.15
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.98
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.97
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.9
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.88
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.85
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.82
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.82
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.81
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.66
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.59
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.58
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.44

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.91  E-value=6.8e-25  Score=189.72  Aligned_cols=219  Identities=16%  Similarity=0.169  Sum_probs=169.7

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC----------CCcc
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADST  110 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~----------~~~~  110 (270)
                      ..++|+++|+  ++++++++++|+.+|++.|.+++++++||++ |+++|++|..|++ +.+..+..          ....
T Consensus        18 ~~~~V~dim~--~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~~l~GivT~~Di~-~~~~~~~~~~~~~~~~~~~~~~   93 (296)
T 3ddj_A           18 QGMNIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLL-STVESYCKDSCSQGDLYHISTT   93 (296)
T ss_dssp             CCSSGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHH-GGGTTCC---CCHHHHHHHHTS
T ss_pred             cccCHHHhcc--CCCcEECCCccHHHHHHHHHHCCCceEEEEC-CeEEEEEeHHHHH-HHhcccccccccchhhHHHhcc
Confidence            5789999999  6899999999999999999999999999999 9999999999998 55532211          1146


Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH--------HHhC-------CCCC
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV--------ATVG-------NTAG  175 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~--------~~~~-------~~~~  175 (270)
                      +++++|+++++++++++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+.        ..+.       ....
T Consensus        94 ~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~  173 (296)
T 3ddj_A           94 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEV  173 (296)
T ss_dssp             BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTS
T ss_pred             cHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCC
Confidence            899999999999999999999999999999999999998899999999999987421        1111       1234


Q ss_pred             ChHHHHHHHHHHHHHHhhccCCCCC--CCccccccccccccC----------CCCccccccCCCCCCCCCCce-------
Q 024256          176 SNNEAASTMMQKFWDSAMALSPNDD--EEDNRSEGSLKFASE----------GADTARYLSYPSPSPGVPSAF-------  236 (270)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~di~~~~~~~----------~~~~~~~~~~p~~~~~~~~~~-------  236 (270)
                      ++.++...|.......++++.+.+.  +.+|..|+.+.+...          .......|..+..+.....+.       
T Consensus       174 ~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m  253 (296)
T 3ddj_A          174 RLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEM  253 (296)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhCCCCeEECCCCcHHHHHHHH
Confidence            4566777777776777777764443  339999998877521          111244555555542233222       


Q ss_pred             ------eEEeecCCCCeeEeecCCCChHHHHHhhhhh
Q 024256          237 ------AFKVQDNKGLMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       237 ------~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~  267 (270)
                            .++|+|++|++    +|+||++||++.+..+
T Consensus       254 ~~~~~~~l~Vvd~~g~~----~Giit~~Dil~~l~~~  286 (296)
T 3ddj_A          254 IVKRIGSLLILNKDNTI----RGIITERDLLIALHHI  286 (296)
T ss_dssp             HHHTCSEEEEECTTSCE----EEEEEHHHHHHHHHHH
T ss_pred             HHcCCCEEEEECCCCeE----EEEEcHHHHHHHHHHH
Confidence                  46699999999    9999999999998654

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.91  E-value=2.2e-24  Score=184.44  Aligned_cols=215  Identities=17%  Similarity=0.177  Sum_probs=162.9

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCC--------------C
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLP--------------A  107 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~--------------~  107 (270)
                      ++++.|.. ++++++++++|+.+|++.|.+++++++||++  +|+++|++|.+|++ +.+..+..              .
T Consensus         4 ~v~~~i~~-~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~-~~~~~~~~~~~~~~~~~~~~~~~   81 (280)
T 3kh5_A            4 RVMKIAQN-KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV-DFMGGGSKYNLIREKHERNFLAA   81 (280)
T ss_dssp             BGGGTSCC-SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHH-HHTTTSGGGHHHHTTSTTCHHHH
T ss_pred             hHHHHhcC-CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHH-HHhcccchhhhhhhccccchhHH
Confidence            44444432 5899999999999999999999999999999  59999999999998 55422110              0


Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhC----------------
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG----------------  171 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~----------------  171 (270)
                      ...+++++|+++++++++++++.+|++.|.+++++++||+|++|+++|++|.+|+++.......                
T Consensus        82 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v  161 (280)
T 3kh5_A           82 INEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVA  161 (280)
T ss_dssp             TTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCB
T ss_pred             hhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEE
Confidence            1358999999999999999999999999999999999999989999999999999987533211                


Q ss_pred             CCCCChHHHHHHHHHHHHHHhhccCCCCC-CCccccccccccccCC---------------CCccccccCCCCCCCCCCc
Q 024256          172 NTAGSNNEAASTMMQKFWDSAMALSPNDD-EEDNRSEGSLKFASEG---------------ADTARYLSYPSPSPGVPSA  235 (270)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~di~~~~~~~~---------------~~~~~~~~~p~~~~~~~~~  235 (270)
                      ....++.++...|.+.....++++.++.- +.+|.+|+.+.+..+.               ....+.++.+..+.....+
T Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~  241 (280)
T 3kh5_A          162 TPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDK  241 (280)
T ss_dssp             CTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHSBSSCCCBCTTCB
T ss_pred             CCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHhcCCCEEECCCCC
Confidence            12234556777777776777777732222 3399999998875421               1124555556555323332


Q ss_pred             e-------------eEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256          236 F-------------AFKVQDNKGLMHRFTCGMLPFPNFIEVT  264 (270)
Q Consensus       236 ~-------------~~~VvD~~g~l~~~~vGivs~~Dil~~i  264 (270)
                      .             .++|+|++|++    +|+||++||++.+
T Consensus       242 l~~a~~~m~~~~~~~l~Vvd~~g~~----~Givt~~dil~~l  279 (280)
T 3kh5_A          242 LKKIAEIMVTNDIGALPVVDENLRI----KGIITEKDVLKYF  279 (280)
T ss_dssp             HHHHHHHHHHHTCCEEEEECTTCBE----EEEEEHHHHGGGG
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCeE----EEEEeHHHHHHhh
Confidence            2             46699999999    9999999999886

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.91  E-value=8.5e-24  Score=185.61  Aligned_cols=226  Identities=14%  Similarity=0.122  Sum_probs=167.2

Q ss_pred             HhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCC--------CC
Q 024256           38 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNL--------PA  107 (270)
Q Consensus        38 ~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~--------~~  107 (270)
                      +++...+++++|+|+++++++++++|+.+|++.|.+++++++||++ + ++++|+++.+|++ ..+....        ..
T Consensus        30 ~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll-~~l~~~~~~~~~~~~~l  108 (330)
T 2v8q_E           30 TFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI-NILHRYYKSALVQIYEL  108 (330)
T ss_dssp             HHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHH-HHHHHHHHHHTTTCCCG
T ss_pred             HHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHH-HHHHHHHhccccchhHH
Confidence            3345568999997768999999999999999999999999999999 5 7999999999998 4432110        00


Q ss_pred             Ccc-------chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC-CCcEEEEEeHHHHHHHHHHHhC--------
Q 024256          108 DST-------LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHAAVATVG--------  171 (270)
Q Consensus       108 ~~~-------~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~~~~~--------  171 (270)
                      ...       +++++|.++++++++++++.+|++.|.+++.+++||+|+ +|+++|+||.+|+++++.....        
T Consensus       109 ~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~  188 (330)
T 2v8q_E          109 EEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFM  188 (330)
T ss_dssp             GGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGG
T ss_pred             hhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhh
Confidence            011       235678999999999999999999999999999999998 8999999999999987643211        


Q ss_pred             ------------C------CCCChHHHHHHHHHHHHHHhhccCCCCC--CCccccccccccccCCC-----Cccccc---
Q 024256          172 ------------N------TAGSNNEAASTMMQKFWDSAMALSPNDD--EEDNRSEGSLKFASEGA-----DTARYL---  223 (270)
Q Consensus       172 ------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~di~~~~~~~~~-----~~~~~~---  223 (270)
                                  .      ...++.++...|.......++++.+.+.  +.+|.+|+.+.+.....     .....+   
T Consensus       189 ~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~  268 (330)
T 2v8q_E          189 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHR  268 (330)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGC
T ss_pred             cCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhcc
Confidence                        1      1233456666666666666777664333  33899999988765421     113333   


Q ss_pred             ---cCCCCCCCCCCce-------------eEEeecCCCCeeEeecCCCChHHHHHhhhhhc
Q 024256          224 ---SYPSPSPGVPSAF-------------AFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEY  268 (270)
Q Consensus       224 ---~~p~~~~~~~~~~-------------~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~~  268 (270)
                         +.+..+.......             .++|+|++|++    +|+||++||++.+..++
T Consensus       269 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l----~Giit~~Dil~~~~~~~  325 (330)
T 2v8q_E          269 SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVV----KGIVSLSDILQALVLTG  325 (330)
T ss_dssp             CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBE----EEEEEHHHHHHHHHSSC
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcE----EEEEeHHHHHHHHHhhc
Confidence               2344432222222             45699999999    99999999999987653

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.90  E-value=1.5e-23  Score=165.04  Aligned_cols=139  Identities=19%  Similarity=0.241  Sum_probs=118.0

Q ss_pred             HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCC--
Q 024256           31 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA--  107 (270)
Q Consensus        31 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~--  107 (270)
                      ..+....+.+...+++++|+|..+++++++++|+.+|+++|.+++++++||++ +|+++|++|.+|+++.........  
T Consensus         3 ami~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~   82 (156)
T 3k6e_A            3 AMIAKEFETFLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEI   82 (156)
T ss_dssp             HHHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHH
T ss_pred             chHHHHHHHHhhccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccccccc
Confidence            45556665555778999999988999999999999999999999999999999 799999999999984444333221  


Q ss_pred             -CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhC
Q 024256          108 -DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  171 (270)
Q Consensus       108 -~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~  171 (270)
                       ...+++++|++++.++++++++.+|++.|.+++  .+||+|++|+++|+||.+||++++...+.
T Consensus        83 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~  145 (156)
T 3k6e_A           83 MADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLH  145 (156)
T ss_dssp             HTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSC
T ss_pred             ccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhc
Confidence             246899999999999999999999999998765  59999999999999999999998665543

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.89  E-value=1.2e-22  Score=162.33  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=111.3

Q ss_pred             hHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCC
Q 024256           30 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA  107 (270)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~  107 (270)
                      ..++..+.. +...+++++|+|.++++++++++|+.+|+++|.+++++++||++ + ++++|+||.+|++ +....+.  
T Consensus        30 ~~~i~~~~~-l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~-~~~~~~~--  105 (172)
T 3lhh_A           30 HAMVKNVFR-LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLL-SESIAGE--  105 (172)
T ss_dssp             --------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHH-HHHHTTC--
T ss_pred             HHHHHHHhc-cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHH-HHHhhcC--
Confidence            355555533 34678999999766889999999999999999999999999999 5 8999999999998 6655442  


Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                       ..+++++| ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||+++++..+
T Consensus       106 -~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~  166 (172)
T 3lhh_A          106 -RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEF  166 (172)
T ss_dssp             -CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTC
T ss_pred             -cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCC
Confidence             46899999 89999999999999999999999999999998899999999999999866544

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.88  E-value=1.3e-22  Score=154.74  Aligned_cols=123  Identities=17%  Similarity=0.189  Sum_probs=110.1

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      .+++++|+++++++++++++|+.+|++.|.+++++++||++  +|+++|++|.+|++ +.+..+......+++++| +++
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~-~~~~~~~~~~~~~v~~~m-~~~   79 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEFTKEIMLRAA-DEI   79 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHH-HHHTSSSCCCHHHHHHHS-BCC
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHH-HHHhccCccchhhHHHhc-cCC
Confidence            46899998656899999999999999999999999999996  48999999999998 776655444457899999 678


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      +++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++++++
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           80 YFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             CEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             eEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence            89999999999999999999999999998999999999999999754

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.88  E-value=3.3e-22  Score=175.65  Aligned_cols=232  Identities=14%  Similarity=0.139  Sum_probs=169.9

Q ss_pred             HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcC----
Q 024256           31 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQN----  104 (270)
Q Consensus        31 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~----  104 (270)
                      ..+..+.+++...+++++|+++.+++++++++|+.+|++.|.+++++++||++ + ++++|+++.+|++ .++...    
T Consensus        10 ~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~-~~~~~~~~~~   88 (334)
T 2qrd_G           10 GALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFV-NVIKYYYQSS   88 (334)
T ss_dssp             HHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHH-HHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHH-HHHHHHhhcc
Confidence            56677777776689999999877899999999999999999999999999999 4 7999999999998 544211    


Q ss_pred             CCCC------ccchh-------hccCCCC--eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCc-----EEEEEeHHHHHH
Q 024256          105 LPAD------STLVE-------KVMTPNP--ECATIDTPIVDALHIMHDGKFLHLPVVDRDGD-----VVDVVDVIHITH  164 (270)
Q Consensus       105 ~~~~------~~~v~-------~im~~~~--~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~-----~~Givt~~dll~  164 (270)
                      ....      ..++.       ++|.+++  +++++++++.++++.|.+++.+++||+|++|.     ++|++|.+|+++
T Consensus        89 ~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~  168 (334)
T 2qrd_G           89 SFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILK  168 (334)
T ss_dssp             SCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHH
T ss_pred             CCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHH
Confidence            0110      12233       3466667  99999999999999999999999999997654     999999999998


Q ss_pred             HHHHHh----------C-------C------CCCChHHHHHHHHHHHHHHhhccCCCCC--CCccccccccccccCCC--
Q 024256          165 AAVATV----------G-------N------TAGSNNEAASTMMQKFWDSAMALSPNDD--EEDNRSEGSLKFASEGA--  217 (270)
Q Consensus       165 ~~~~~~----------~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~di~~~~~~~~~--  217 (270)
                      ......          .       .      ...++.++...|.......++++.+.+.  +.+|.+|+.+.+..+..  
T Consensus       169 ~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~  248 (334)
T 2qrd_G          169 FISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN  248 (334)
T ss_dssp             HHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGG
T ss_pred             HHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhcccccc
Confidence            764311          0       0      1234456777777666666777764333  33999999987765431  


Q ss_pred             ---CccccccC------CCCCCCCCCce-------------eEEeecCCCCeeEeecCCCChHHHHHhhhhh
Q 024256          218 ---DTARYLSY------PSPSPGVPSAF-------------AFKVQDNKGLMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       218 ---~~~~~~~~------p~~~~~~~~~~-------------~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~  267 (270)
                         ...+.+..      +..+.......             .++|+|++|++    +|+||++||++.+...
T Consensus       249 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l----~Giit~~dil~~~~~~  316 (334)
T 2qrd_G          249 LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKL----EGILSLADILNYIIYD  316 (334)
T ss_dssp             GGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBE----EEEEEHHHHHHHHHSC
T ss_pred             ccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeE----EEEEeHHHHHHHHHhc
Confidence               11334442      33331122221             45699999999    9999999999988653

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.88  E-value=1.2e-22  Score=177.77  Aligned_cols=232  Identities=15%  Similarity=0.158  Sum_probs=170.9

Q ss_pred             hHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhc---C
Q 024256           30 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQ---N  104 (270)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~---~  104 (270)
                      .+.+.++.+++...++.++|.++.++++++.++|+.+|++.|.+++++++||++ + ++++|++|..|++ ..+..   .
T Consensus        17 ~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~-~~l~~~~~~   95 (323)
T 3t4n_C           17 QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFI-NVIQYYFSN   95 (323)
T ss_dssp             HHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHH-HHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHH-HHHHHHHcC
Confidence            366777888878889999999988999999999999999999999999999999 3 5999999999998 54421   0


Q ss_pred             CC-------CCccchhh------ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCc-----EEEEEeHHHHHHHH
Q 024256          105 LP-------ADSTLVEK------VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD-----VVDVVDVIHITHAA  166 (270)
Q Consensus       105 ~~-------~~~~~v~~------im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~-----~~Givt~~dll~~~  166 (270)
                      ..       .....+.+      +|.++++++++++++.+|++.|.+++++++||+|+++.     ++|++|.+|+++.+
T Consensus        96 ~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l  175 (323)
T 3t4n_C           96 PDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFV  175 (323)
T ss_dssp             GGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHH
Confidence            00       00123333      45788999999999999999999999999999998775     99999999999875


Q ss_pred             HHHh----------------C-------CCCCChHHHHHHHHHHHHHHhhccCCCCC--CCccccccccccccCCC----
Q 024256          167 VATV----------------G-------NTAGSNNEAASTMMQKFWDSAMALSPNDD--EEDNRSEGSLKFASEGA----  217 (270)
Q Consensus       167 ~~~~----------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~di~~~~~~~~~----  217 (270)
                      ....                .       ....++.++...|.+.....++++.+.+.  +.+|.+|+.+.+.....    
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~  255 (323)
T 3t4n_C          176 ALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLS  255 (323)
T ss_dssp             HHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTT
T ss_pred             HhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhcc
Confidence            4221                0       12234556777777777777777765433  33999999988765431    


Q ss_pred             -CccccccC------CCCCCCCCCce-------------eEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          218 -DTARYLSY------PSPSPGVPSAF-------------AFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       218 -~~~~~~~~------p~~~~~~~~~~-------------~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                       ...+.+..      +..+.......             .++|+|++|++    +|+||++||++.+..
T Consensus       256 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l----~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          256 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRL----VGVLTLSDILKYILL  320 (323)
T ss_dssp             SBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBE----EEEEEHHHHHHHHHH
T ss_pred             CCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcE----EEEEEHHHHHHHHHh
Confidence             11344443      33331122221             46699999999    999999999999854

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.88  E-value=3.9e-22  Score=155.14  Aligned_cols=134  Identities=16%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             hhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCC
Q 024256           29 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLP  106 (270)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~  106 (270)
                      +..++..... +...+++++|++..+++++++++|+.+|++.|.+++++++||++ + |+++|++|.+|++ +.+..+. 
T Consensus        10 e~~~i~~~~~-l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~-~~~~~~~-   86 (148)
T 3lv9_A           10 EQRLVDNIFE-FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLY-NQKINEN-   86 (148)
T ss_dssp             --------CG-GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHH-HHHHHHS-
T ss_pred             HHHHHHHHhc-cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHhcCC-
Confidence            3355555533 35778999999655899999999999999999999999999999 5 8999999999998 5544332 


Q ss_pred             CCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          107 ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       107 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                        ..+++++| ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++++++.
T Consensus        87 --~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           87 --KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             --CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             --CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence              46899999 889999999999999999999999999999988999999999999998654

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.88  E-value=1.3e-22  Score=161.63  Aligned_cols=128  Identities=24%  Similarity=0.266  Sum_probs=110.2

Q ss_pred             HHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC--------
Q 024256           35 TLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL--------  105 (270)
Q Consensus        35 ~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~--------  105 (270)
                      ++...+...+|+++|+  ++++++++++|+.+|++.|.+++++++||+| +|+++|+||.+|++ +......        
T Consensus        10 ~~~~~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll-~~~~~~~~~~~~~~~   86 (170)
T 4esy_A           10 AIARAIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFL-RGSIPFWIYEASEIL   86 (170)
T ss_dssp             HHHHHHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGG-GGTCCTTHHHHHHHH
T ss_pred             HHHHHHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHH-HHHhhccccchhhhh
Confidence            3344456678999999  7899999999999999999999999999999 89999999999997 3221110        


Q ss_pred             --------------CCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          106 --------------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       106 --------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                                    .....+++++|+++++++++++++.+|+++|.+++++++||+| +|+++|+||.+||++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A           87 SRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             TTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred             hhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                          0113579999999999999999999999999999999999998 69999999999999863

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.87  E-value=7.9e-23  Score=175.20  Aligned_cols=210  Identities=16%  Similarity=0.142  Sum_probs=140.4

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCee
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  122 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~  122 (270)
                      +++++|+  ++++++++++|+.+|++.|.+++++++||++ +|+++|+++..|++ +..      ...+++++|.+++++
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~-~~~------~~~~v~~~m~~~~~~   72 (282)
T 2yzq_A            2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-VNP------DEEQLAMLVKRDVPV   72 (282)
T ss_dssp             BHHHHSE--ESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCE
T ss_pred             chHHhcc--CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hhh------ccCCHHHHcCCCCcE
Confidence            5789998  6899999999999999999999999999999 89999999999997 333      146899999998999


Q ss_pred             ecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH-HHHHH-------hCC----------CCCChHHHHHHH
Q 024256          123 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH-AAVAT-------VGN----------TAGSNNEAASTM  184 (270)
Q Consensus       123 v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~-~~~~~-------~~~----------~~~~~~~~~~~~  184 (270)
                      +++++++.++++.|.+++.+.+||+|++|+++|++|..|+++ .+...       ...          ...++.++...+
T Consensus        73 v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~  152 (282)
T 2yzq_A           73 VKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKAL  152 (282)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBSCCCCEETTSBHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCCCCEEECCCCCHHHHHHHH
Confidence            999999999999999999999999998899999999999998 43210       000          112334555555


Q ss_pred             HHHHHHHhhccCCCCC--CCccccccc------cccc------cC----------------------CCCccccccCCCC
Q 024256          185 MQKFWDSAMALSPNDD--EEDNRSEGS------LKFA------SE----------------------GADTARYLSYPSP  228 (270)
Q Consensus       185 ~~~~~~~~~~~~~~~~--~~~t~~di~------~~~~------~~----------------------~~~~~~~~~~p~~  228 (270)
                      .......++++.+.+.  +.+|..|+.      +.+.      ..                      ....+..|+.+..
T Consensus       153 ~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~  232 (282)
T 2yzq_A          153 LLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVI  232 (282)
T ss_dssp             HTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGGTCBSSCC
T ss_pred             HHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCc
Confidence            5544555666653332  238999998      5542      10                      0112556666666


Q ss_pred             CCCCCCce-------------eEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          229 SPGVPSAF-------------AFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       229 ~~~~~~~~-------------~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      +.....+.             .++|+|++|++    +|+||++|+++.+..
T Consensus       233 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~l----vGiit~~Dil~~~~~  279 (282)
T 2yzq_A          233 VATPHMTVHEVALKMAKYSIEQLPVIRGEGDL----IGLIRDFDLLKVLVK  279 (282)
T ss_dssp             CBCTTSBHHHHHHHHHHHTCSEEEEEETTTEE----EEEEEHHHHGGGGCC
T ss_pred             eeCCCCCHHHHHHHHHHcCcceeEEECCCCCE----EEEEeHHHHHHHHHh
Confidence            53333322             56699999999    999999999998764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.87  E-value=6.5e-22  Score=150.58  Aligned_cols=124  Identities=15%  Similarity=0.184  Sum_probs=108.3

Q ss_pred             hCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccC
Q 024256           40 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  117 (270)
Q Consensus        40 ~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~  117 (270)
                      +...+++++|++..+++++++++|+.+|++.|.+++++++||++ + |+++|++|.+|++ +....+.  ...+++++|+
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~-~~~~~~~--~~~~v~~~m~   79 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELF-KMQQSGS--GQKQLGAVMR   79 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHH-HHHHTTT--TTSBHHHHSE
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHH-HHHhcCC--CcCCHHHHhc
Confidence            34668999999766788999999999999999999999999999 5 8999999999998 6665443  2468999995


Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                       ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++++++
T Consensus        80 -~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           80 -PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             -ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence             5789999999999999999999999999998999999999999998743

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.87  E-value=6.5e-22  Score=155.49  Aligned_cols=128  Identities=15%  Similarity=0.204  Sum_probs=111.9

Q ss_pred             hHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCC
Q 024256           30 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA  107 (270)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~  107 (270)
                      ..++..+.+ +...+++++|+++++++++++++|+.+|++.|.+++++++||++ + ++++|+||.+|++ +.+..+   
T Consensus        26 ~~~i~~~~~-l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~-~~~~~~---  100 (156)
T 3oi8_A           26 LLRLEKVLD-FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLL-KYMFNP---  100 (156)
T ss_dssp             HHHHHHHHH-HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGSSCG---
T ss_pred             HHHHHHHhc-cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHHcC---
Confidence            466666654 45789999999655899999999999999999999999999999 5 5999999999997 544332   


Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHH
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  163 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll  163 (270)
                      ...+++++|++ ++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||+
T Consensus       101 ~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            35789999975 88999999999999999999999999999999999999999986

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.86  E-value=2.4e-22  Score=154.29  Aligned_cols=123  Identities=20%  Similarity=0.233  Sum_probs=108.2

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      .+++++|+|.++++++++++|+.+|+++|.+++++++||++ + |+++|+||.+|++ +.+.... ....+++++|++ +
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~-~~~~~~~-~~~~~v~~~m~~-~   79 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLL-PLILKAD-GDSDDVKKLLRP-A   79 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGGGSSS-GGGCCGGGTCBC-C
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHHhcc-CCCcCHHHHcCC-C
Confidence            47899999766789999999999999999999999999999 5 7999999999997 5554322 235789999976 8


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      +++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++++..
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            899999999999999999999999999989999999999999987543

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.86  E-value=9.1e-21  Score=144.45  Aligned_cols=125  Identities=28%  Similarity=0.407  Sum_probs=112.5

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      ...+++++|.  ++++++++++|+.+|++.|.+++.+++||+++|+++|+++.+|++ +.+..+... ..+++++|.+++
T Consensus         2 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~~~~~~   77 (133)
T 2ef7_A            2 EEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSL-ETKAEEFMTASL   77 (133)
T ss_dssp             CCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCCT-TCBGGGTSEECC
T ss_pred             CcccHHHhcc--CCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHH-HHHhcCCCc-ccCHHHHcCCCC
Confidence            3568999999  579999999999999999999999999999999999999999997 666655433 478999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  169 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~  169 (270)
                      .++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++...
T Consensus        78 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           78 ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999999889999999999999875543

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.86  E-value=1.2e-21  Score=148.90  Aligned_cols=121  Identities=16%  Similarity=0.204  Sum_probs=107.4

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  119 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~  119 (270)
                      ..+++++|+|.++++++++++|+.+|++.|.+++++++||++ + |+++|++|.+|++ +....    ...+++++|++ 
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~-~~~~~----~~~~v~~~m~~-   77 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLL-RYMLE----PALDIRSLVRP-   77 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGG-GGGTC----TTSCGGGGCBC-
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHH-hHhcc----CCcCHHHHhCC-
Confidence            457999999766789999999999999999999999999999 4 8999999999997 54432    24689999965 


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      ++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++++++.
T Consensus        78 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           78 AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            7899999999999999999999999999988999999999999998654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.86  E-value=2.8e-21  Score=154.68  Aligned_cols=135  Identities=13%  Similarity=0.122  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCC
Q 024256           29 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLP  106 (270)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~  106 (270)
                      +..++..+... ...+|+++|+|+++++++++++|+.+|++.|.+++++++||++ + ++++|+|+.+|++ +....+. 
T Consensus        23 e~~~i~~~l~l-~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~-~~~~~~~-   99 (173)
T 3ocm_A           23 ERNMVSGVLTL-AERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLV-ADLITEG-   99 (173)
T ss_dssp             HHHHHHHHHHH-TTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHH-HHHHHHS-
T ss_pred             HHHHHHHHhcc-CCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHH-HHHhcCC-
Confidence            34666666544 5779999998766899999999999999999999999999998 5 7999999999998 5544321 


Q ss_pred             CCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          107 ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       107 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                        ..+++ + .++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||++.+...+
T Consensus       100 --~~~v~-~-~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i  159 (173)
T 3ocm_A          100 --RVRRN-R-LRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF  159 (173)
T ss_dssp             --SCCGG-G-SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred             --cchhH-h-cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence              35677 4 477889999999999999999999999999998999999999999999865433

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.86  E-value=8.6e-21  Score=149.38  Aligned_cols=135  Identities=20%  Similarity=0.227  Sum_probs=117.6

Q ss_pred             HHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccch
Q 024256           34 ETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV  112 (270)
Q Consensus        34 ~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v  112 (270)
                      ..+.+.+...+++++|+  + ++++++++|+.+|++.|.+++++++||++ +|+++|+||.+|++ +.+..+......++
T Consensus         8 ~~l~~~l~~~~v~~im~--~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v   83 (159)
T 3fv6_A            8 QLLADKLKKLQVKDFQS--I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL-RASIGQQELTSVPV   83 (159)
T ss_dssp             HHHHHHHTTCBGGGSCB--C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HHHTSCSCTTTCBG
T ss_pred             HHHHHHHhhCCHHHHcC--C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH-HHhhccCcccCcCH
Confidence            34455666779999999  4 45999999999999999999999999999 89999999999998 65544444446799


Q ss_pred             hhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC---cEEEEEeHHHHHHHHHHHhCC
Q 024256          113 EKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDG---DVVDVVDVIHITHAAVATVGN  172 (270)
Q Consensus       113 ~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g---~~~Givt~~dll~~~~~~~~~  172 (270)
                      .++|++  +++++++++++.+|++.|.+++++++||+|++|   +++|+||..||++++......
T Consensus        84 ~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~~  148 (159)
T 3fv6_A           84 HIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSEN  148 (159)
T ss_dssp             GGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhhc
Confidence            999998  889999999999999999999999999999888   999999999999987665543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.86  E-value=1.1e-21  Score=148.79  Aligned_cols=120  Identities=18%  Similarity=0.261  Sum_probs=106.6

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      .+++++|++.++++++++++|+.+|++.|.+++++++||++ + |+++|++|.+|++ +.+....  ...+++++|++ +
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~-~~~~~~~--~~~~v~~~m~~-~   78 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDA--EAFSMDKVLRT-A   78 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGGSTTC--CCCCHHHHCBC-C
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHhccC--CCCCHHHHcCC-C
Confidence            47899999645699999999999999999999999999999 5 7999999999997 5543322  35689999965 7


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      .++++++++.+|++.|.+++.+++||+|++|+++|+||..|+++++
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            7999999999999999999999999999999999999999999873

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.86  E-value=8.8e-21  Score=142.77  Aligned_cols=119  Identities=22%  Similarity=0.233  Sum_probs=109.2

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeee
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  123 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v  123 (270)
                      +++++|.  ++++++++++|+.+|++.|.+++.+++||+++|+++|+++.+|++ +.+.++......+++++|.+++.++
T Consensus         2 ~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~-~~~~~~~~~~~~~v~~~m~~~~~~v   78 (125)
T 1pbj_A            2 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTI   78 (125)
T ss_dssp             CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             CHHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHH-HHHhcCCcccccCHHHHcCCCCeEE
Confidence            6789999  689999999999999999999999999999999999999999998 6666555444678999999999999


Q ss_pred             cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++++++.++++.|.+++.+.+||+|+ |+++|+||..|+++++
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           79 SPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAK  120 (125)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            99999999999999999999999997 9999999999999863

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.86  E-value=2.5e-21  Score=151.53  Aligned_cols=133  Identities=16%  Similarity=0.166  Sum_probs=114.4

Q ss_pred             HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEE-e--CCEEEEEeeHHHHHHHHHhcCCCC
Q 024256           31 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT-V--ENKPRGILTSKDILMRVISQNLPA  107 (270)
Q Consensus        31 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv-~--~~~~~Givt~~dl~~~~~~~~~~~  107 (270)
                      .++.+..+. ...+++++|+++++++++++++|+.+|++.|.+++++++||+ +  +|+++|+||.+|++ +.+..+.  
T Consensus         9 ~~i~~~~~l-~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~-~~~~~~~--   84 (153)
T 3oco_A            9 NFMQRAFEM-NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIV-RQARIDD--   84 (153)
T ss_dssp             CHHHHHHHH-HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHH-HHHHHHT--
T ss_pred             HHHHHhccc-CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHH-hHHhcCC--
Confidence            455555433 456899999954589999999999999999999999999999 5  48999999999998 5544332  


Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHH
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  169 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~  169 (270)
                       ..+++++| ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||++++...
T Consensus        85 -~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~  144 (153)
T 3oco_A           85 -KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGN  144 (153)
T ss_dssp             -TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC-
T ss_pred             -CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhcc
Confidence             46899999 8999999999999999999999999999999889999999999999986543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.86  E-value=2.8e-21  Score=146.53  Aligned_cols=121  Identities=13%  Similarity=0.082  Sum_probs=109.1

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCe
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  121 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~  121 (270)
                      ..+++++|.  ++++++++++++.+|++.|.+++++++||+++|+++|++|.+|++ +.+..+.. ...+++++|.+++.
T Consensus         4 s~~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~-~~~~v~~~m~~~~~   79 (128)
T 3gby_A            4 SVTFSYLAE--TDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLL-EGRKGWPT-VKEKLGEELLETVR   79 (128)
T ss_dssp             TCBGGGGCB--CCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-TTCSSSCC-TTCBCCGGGCBCCC
T ss_pred             ceEHHHhhc--CCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHH-HHHhhCCc-ccCcHHHHccCCCc
Confidence            457999999  689999999999999999999999999999999999999999997 55443322 12679999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..|+++++
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL  124 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            999999999999999999999999999899999999999999874

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.85  E-value=9.1e-21  Score=142.18  Aligned_cols=116  Identities=25%  Similarity=0.307  Sum_probs=106.7

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCee
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  122 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~  122 (270)
                      +++++|.  ++++++++++|+.+|++.|.+++.+++||++ +|+++|+++.+|++ +.+..+    ..+++++|.+++.+
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~-~~~~~~----~~~v~~~~~~~~~~   74 (122)
T 3kpb_A            2 LVKDILS--KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA-KALAQN----KKTIEEIMTRNVIT   74 (122)
T ss_dssp             BHHHHCC--SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHH-HHHHTT----CCBGGGTSBSSCCC
T ss_pred             chHHhhC--CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHH-HHHHhc----ccCHHHHhcCCCeE
Confidence            6889999  6799999999999999999999999999999 89999999999998 666543    23899999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          123 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       123 v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      +++++++.++++.|.+++.+++||+|++|+++|+||..||++++
T Consensus        75 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           75 AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence            99999999999999999999999999889999999999999863

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.85  E-value=3.7e-21  Score=149.73  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=112.6

Q ss_pred             HhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-----CCCccc
Q 024256           38 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTL  111 (270)
Q Consensus        38 ~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~-----~~~~~~  111 (270)
                      +.+...+++++|++.++++++++++|+.+|++.|.+++++++||++ +|+++|+||.+|++ +.+....     .....+
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~   88 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMIL-DGILGLERIEFERLEEMK   88 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHTBCSSSBCGGGGGGCB
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHH-HHHHhhcccchhHHhcCC
Confidence            4445668999999655699999999999999999999999999999 89999999999998 6554221     123578


Q ss_pred             hhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       112 v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                      ++++|.+++.++++++++.+|++.|.++++  +||+|++|+++|+||..||++++...+
T Consensus        89 v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~  145 (150)
T 3lqn_A           89 VEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKV  145 (150)
T ss_dssp             GGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             HHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHh
Confidence            999999999999999999999999999886  999998999999999999999865543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.85  E-value=7.2e-21  Score=145.46  Aligned_cols=123  Identities=27%  Similarity=0.465  Sum_probs=109.3

Q ss_pred             CccccccCC-CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCee
Q 024256           44 SLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  122 (270)
Q Consensus        44 ~v~~im~~~-~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~  122 (270)
                      +++++|+|+ ++++++++++|+.+|++.|.+++.+++||+++|+++|+++.+|+++++..++......++.++|.+++.+
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~   86 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAY   86 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCeE
Confidence            689999843 4789999999999999999999999999999999999999999973355444334467899999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          123 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       123 v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      +++++++.++++.|.+++.+++||+| +|+++|+||..|+++++.
T Consensus        87 v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           87 VDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence            99999999999999999999999999 799999999999998743

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.84  E-value=2.1e-20  Score=143.23  Aligned_cols=125  Identities=27%  Similarity=0.361  Sum_probs=110.7

Q ss_pred             hhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHH-HHHHHhcCCCCCccchhhcc
Q 024256           39 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI-LMRVISQNLPADSTLVEKVM  116 (270)
Q Consensus        39 ~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl-~~~~~~~~~~~~~~~v~~im  116 (270)
                      .+...+++++|+  ++++++++++|+.+|++.|.+++.+++||++ +|+++|+++.+|+ + +.+..+.. ...+++++|
T Consensus         4 ~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~-~~~~~~~~-~~~~v~~~m   79 (138)
T 2p9m_A            4 TLKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY-NLIRDKYT-LETTIGDVM   79 (138)
T ss_dssp             -CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHH-HHTTTCCC-SSCBHHHHS
T ss_pred             ccccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHH-HHHhhccc-CCcCHHHHh
Confidence            455778999998  6789999999999999999999999999999 8999999999999 7 65554333 357899999


Q ss_pred             CCCCeeecCCCCHHHHHHHhHhCC-----CCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          117 TPNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       117 ~~~~~~v~~~~~l~~a~~~~~~~~-----~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      .+++.++++++++.++++.|.+++     .+++||+|++|+++|+||..|+++++.
T Consensus        80 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           80 TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             CSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            999999999999999999999999     999999998899999999999998743

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.84  E-value=2.1e-20  Score=143.27  Aligned_cols=124  Identities=25%  Similarity=0.463  Sum_probs=110.9

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  119 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~  119 (270)
                      ...+++++|+  ++++++++++|+.+|++.|.+++++++||++ +|+++|+|+..|++++++..+. ....++.++|.++
T Consensus         5 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~   81 (138)
T 2yzi_A            5 MKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRN   81 (138)
T ss_dssp             TTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCS
T ss_pred             hhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhCC
Confidence            4568999999  6899999999999999999999999999999 8999999999999734444433 3357899999999


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      +.++++++++.++++.|.+++.+++ |+|++|+++|+||..||++++..
T Consensus        82 ~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           82 LITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred             CeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999 99988999999999999997553

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.84  E-value=1.4e-20  Score=146.54  Aligned_cols=122  Identities=20%  Similarity=0.235  Sum_probs=110.3

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  119 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~  119 (270)
                      ...+++++|.+..+++++++++|+.+|++.|.+++++++||++ +|+++|+||..|++ +.+..+......+++++|+++
T Consensus        26 l~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~~m~~~  104 (149)
T 3k2v_A           26 LLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVMTRG  104 (149)
T ss_dssp             TTSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHH-HHHCSSSCCTTCBHHHHSEES
T ss_pred             cccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHH-HHHhcCCCcccCcHHHHcCCC
Confidence            3568999999323899999999999999999999999999999 89999999999998 777665554568999999999


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHH
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  164 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~  164 (270)
                      +.++++++++.+|++.|.+++.+.+||+|++ +++|+||..||++
T Consensus       105 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          105 GIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             CCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             CeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            9999999999999999999999999999965 9999999999974

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.84  E-value=3.3e-20  Score=142.90  Aligned_cols=119  Identities=22%  Similarity=0.360  Sum_probs=108.0

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CC--EEEEEeeHHHHHHHHHhcCCCCCccchhhccCC
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN--KPRGILTSKDILMRVISQNLPADSTLVEKVMTP  118 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~--~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~  118 (270)
                      ..+++++|+  ++++++++++|+.+|++.|.+++++++||++ ++  +++|+++.+|++ +.+.++... ..+++++|.+
T Consensus         4 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~m~~   79 (141)
T 2rih_A            4 AIRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDL-DGPAMPIANS   79 (141)
T ss_dssp             -CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHH-HHHHTTCCT-TSBSGGGCBC
T ss_pred             ceEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHH-HHHhcCCCC-CCCHHHHcCC
Confidence            457999999  6899999999999999999999999999999 56  899999999998 666554333 5789999999


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++.+++++ ++.+|++.|.+++.+++||+|++|+++|+||..||+++
T Consensus        80 ~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~  125 (141)
T 2rih_A           80 PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  125 (141)
T ss_dssp             CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHH
Confidence            99999999 99999999999999999999988999999999999976

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.84  E-value=1.1e-20  Score=148.32  Aligned_cols=127  Identities=23%  Similarity=0.388  Sum_probs=111.2

Q ss_pred             CCccccccCC----CceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC
Q 024256           43 PSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  118 (270)
Q Consensus        43 ~~v~~im~~~----~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~  118 (270)
                      .+++++|.++    ++++++++++|+.+|++.|.+++++++||.++|+++|+++.+|+++.+..........+++++|++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~   86 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA   86 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC
Confidence            4799999865    567999999999999999999999999997799999999999998333333333346799999999


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                      ++.++++++++.++++.|.+++++++||+| +|+++|+||..||++++....
T Consensus        87 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A           87 KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC
T ss_pred             CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence            999999999999999999999999999999 799999999999999865443

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.83  E-value=1.6e-22  Score=183.10  Aligned_cols=151  Identities=23%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCC-CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFR-PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA   79 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i   79 (270)
                      ||+++|.+||+++|++|     |+|++|.|.-+++-.+...+ ++-...|.  .+++++.|++|+.+|+++|.+++++.+
T Consensus       100 MDTVTe~~MAIamAr~G-----GiGvIH~n~sie~Qa~~V~~VKr~e~g~i--~dPvtl~P~~Tv~da~~l~~~~~isgv  172 (556)
T 4af0_A          100 MDTVTEDRMAIALALHG-----GLGIIHHNCSAEEQAAMVRRVKKYENGFI--TDPLCLGPDATVGDVLEIKAKFGFCGV  172 (556)
T ss_dssp             CTTTCSHHHHHHHHHTT-----CEEEECCSSCHHHHHHHHHHHHHCCC--------------------------------
T ss_pred             cccccCHHHHHHHHHCC-----CeEEEcCCCCHHHHHHHHHHHHhcccCcc--CCCeEcCCCCCHHHHHHHHHHhCCCcc
Confidence            89999999999999999     99999998444444332211 12234555  579999999999999999999999999


Q ss_pred             EEEe----CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEE
Q 024256           80 VVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD  155 (270)
Q Consensus        80 ~Vv~----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~G  155 (270)
                      ||++    +++++||||.+|+  ++.     ..+.+++++|++++++++++.++++|.++|.+++++.+||||++|+++|
T Consensus       173 pVvd~g~~~~kLvGIvT~RD~--rf~-----d~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvG  245 (556)
T 4af0_A          173 PITETGEPDSKLLGIVTGRDV--QFQ-----DAETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVS  245 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCcCCEEEEEEecccc--ccc-----ccceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEE
Confidence            9998    4689999999998  331     2357999999999999999999999999999999999999999999999


Q ss_pred             EEeHHHHHHH
Q 024256          156 VVDVIHITHA  165 (270)
Q Consensus       156 ivt~~dll~~  165 (270)
                      +||.+|+++.
T Consensus       246 lIT~kDi~k~  255 (556)
T 4af0_A          246 LVARSDLLKN  255 (556)
T ss_dssp             ----------
T ss_pred             EEEechhhhh
Confidence            9999999986

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.83  E-value=1.6e-20  Score=145.91  Aligned_cols=126  Identities=28%  Similarity=0.402  Sum_probs=108.3

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-------------CCC
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------LPA  107 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~-------------~~~  107 (270)
                      ..+++++|++..+++++++++|+.+|++.|.+++++++||++ +|+++|+++..|++ ++....             ...
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~-~~~~~~~~~~~~~~~~~~~~~~   82 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL-ALDSGDSTWKTFNAVQKLLSKT   82 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHT-TCC----CCHHHHHHHTC----
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHH-HhhcccCcccchHHHHHHHHHh
Confidence            357999999544899999999999999999999999999999 78999999999996 321110             112


Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      ...++.++|.++++++++++++.+|++.|.+++.+++||+|++|+++|+||.+||++++..
T Consensus        83 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           83 NGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             -CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            2468999999999999999999999999999999999999988999999999999998553

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.83  E-value=1.3e-20  Score=143.64  Aligned_cols=121  Identities=17%  Similarity=0.319  Sum_probs=108.4

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      ..+++++|.  ++++++++++|+.+|++.|.+++.+++||++ +|+++|+++.+|++++++..+......+++++|.+++
T Consensus         7 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~   84 (133)
T 1y5h_A            7 MTTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSI   84 (133)
T ss_dssp             -CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCC
T ss_pred             hcCHHHHhc--CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCC
Confidence            458999998  5789999999999999999999999999997 8999999999999733555544434578999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .++++++++.++++.|.+++.+++||+|+ |+++|+||..||+++
T Consensus        85 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           85 YYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             CCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            99999999999999999999999999997 999999999999985

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.83  E-value=5.1e-20  Score=145.16  Aligned_cols=123  Identities=19%  Similarity=0.197  Sum_probs=108.1

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc--------CCCCCccch
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ--------NLPADSTLV  112 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~--------~~~~~~~~v  112 (270)
                      ..+++++|.  ++++++++++|+.+|++.|.+++++++||++ +|+++|+|+.+|++ +.+..        .......++
T Consensus         4 ~~~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~-~~~~~~~~~~~~~~~~~~~~~v   80 (160)
T 2o16_A            4 MIKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL-AAQESSLQRSAQGDSLAFETPL   80 (160)
T ss_dssp             CCBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHHHHHCC---------CCCBH
T ss_pred             cCcHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH-HHHHHhhcccccccchhcccCH
Confidence            457999998  6789999999999999999999999999999 79999999999998 55432        111235789


Q ss_pred             hhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       113 ~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      .++|.++++++++++++.+|++.|.+++.+.+||+|+ |+++|+||..||++++..
T Consensus        81 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           81 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             HHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999999999999997 999999999999987543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=1.8e-20  Score=148.50  Aligned_cols=126  Identities=21%  Similarity=0.351  Sum_probs=111.4

Q ss_pred             hhCCCCccccccCC-CceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-CCCCccchhhc
Q 024256           39 RMFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKV  115 (270)
Q Consensus        39 ~~~~~~v~~im~~~-~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~-~~~~~~~v~~i  115 (270)
                      .+...+|+++|.++ .+++++++++|+.+|++.|.+++++++||++ +|+++|+||.+|++ +.+... ......+++++
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~v~~~   98 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV-KAVAGQGAASLQQSVSVA   98 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HHHHHHGGGGGTSBGGGT
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH-HHHHhcCCccccCCHHHH
Confidence            45667899999952 3689999999999999999999999999999 89999999999998 544432 12335789999


Q ss_pred             cCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          116 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       116 m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      |.++++++++++++.++++.|.+++.+++||+|+ |+++|+||..||++++
T Consensus        99 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~  148 (165)
T 3fhm_A           99 MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKAR  148 (165)
T ss_dssp             SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHT
T ss_pred             hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999998 9999999999999974

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.83  E-value=5.5e-20  Score=144.04  Aligned_cols=129  Identities=16%  Similarity=0.198  Sum_probs=110.1

Q ss_pred             hhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-----CCCccch
Q 024256           39 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLV  112 (270)
Q Consensus        39 ~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~-----~~~~~~v  112 (270)
                      .+...+++++|.+.++++++++++|+.+|++.|.+++++++||++ +|+++|+++..|++ +.+....     .....++
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~v   85 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM-DAILGLERIEFERLETMKV   85 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHH-HHSBCSSSBCGGGGGTCBG
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHH-HHHhcccccchHHhcCCcH
Confidence            345778999999433799999999999999999999999999999 79999999999997 5554321     1135689


Q ss_pred             hhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       113 ~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                      .++|.+++.++++++++.+|++.|.++++  +||+|++|+++|+||..||++++....
T Consensus        86 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~  141 (157)
T 2emq_A           86 EEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQL  141 (157)
T ss_dssp             GGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTT
T ss_pred             HHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            99999999999999999999999999886  999998899999999999999866544

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.83  E-value=1.5e-19  Score=141.86  Aligned_cols=122  Identities=22%  Similarity=0.343  Sum_probs=107.2

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcE-EEEEeCCEEEEEeeHHHHHHHHHhc---------------CCC
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQ---------------NLP  106 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~-i~Vv~~~~~~Givt~~dl~~~~~~~---------------~~~  106 (270)
                      .+++++|+  ++++++++++|+.+|++.|.++++++ +||+++++++|++|..|++ +.+..               ...
T Consensus        16 ~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~-~~~~~~~~~~~~~~~~~~~~~~~   92 (157)
T 1o50_A           16 KDVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL-KVSGFHFFGFIPKEELIRSSMKR   92 (157)
T ss_dssp             HHHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHH-HHHHHHHHCCCC-------CCCC
T ss_pred             ccHhhccc--CCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHH-HHHhhhHHhhhccHHHHHHHHHH
Confidence            36899999  68999999999999999999999999 9999944999999999998 54321               112


Q ss_pred             CCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          107 ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       107 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      ....+++++|.+ ++++++++++.+|++.|.+++.+++||+|++|+++|+||..||++++..
T Consensus        93 ~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           93 LIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            235789999999 9999999999999999999999999999988999999999999987543

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.82  E-value=7.2e-20  Score=143.94  Aligned_cols=130  Identities=14%  Similarity=0.188  Sum_probs=111.4

Q ss_pred             HhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-----CCccc
Q 024256           38 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-----ADSTL  111 (270)
Q Consensus        38 ~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~-----~~~~~  111 (270)
                      +.+...+++++|.++.+++++++++|+.+|++.|.+++++++||++ +|+++|+|+..|++ +.+.....     ....+
T Consensus         9 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~-~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A            9 DQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM-NSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             --CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHH-HHHBCSSSBCGGGTTTSB
T ss_pred             HHHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHH-HHhhhhcccchhhhccCC
Confidence            3456778999999433899999999999999999999999999999 78999999999997 66644221     23578


Q ss_pred             hhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       112 v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                      +.++|.+++.++++++++.+|++.|.++++  +||+|++|+++|+||..||++++...+
T Consensus        88 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~  144 (159)
T 1yav_A           88 VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHI  144 (159)
T ss_dssp             HHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             HHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHH
Confidence            999999999999999999999999998876  999998899999999999999865543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.82  E-value=2.3e-20  Score=149.34  Aligned_cols=127  Identities=22%  Similarity=0.347  Sum_probs=109.3

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHh-cC----------------
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS-QN----------------  104 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~-~~----------------  104 (270)
                      .+++++|.+..+++++++++|+.+|+++|.+++++++||++ +|+++|+|+.+|++ ++.. .+                
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLL-ALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHT-CC-------------------CC
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHH-hhhhhccccCCcccccccccchh
Confidence            47899999533899999999999999999999999999999 89999999999996 3211 00                


Q ss_pred             ----------CCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          105 ----------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       105 ----------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                                ......+++++|+++++++++++++.+|+++|.+++++++||+|++|+++|+||.+||++++....
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~  158 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIK  158 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHh
Confidence                      012246899999999999999999999999999999999999998999999999999999866543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.82  E-value=4.7e-19  Score=145.47  Aligned_cols=128  Identities=16%  Similarity=0.233  Sum_probs=112.3

Q ss_pred             HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHC---CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC
Q 024256           31 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTV-ENKPRGILTSKDILMRVISQNLP  106 (270)
Q Consensus        31 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~---~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~  106 (270)
                      ..+.++.. +...+++++|+  ++++++++++|+.+|++.|.++   +++++||++ +|+++|+|+.+|++ .     . 
T Consensus        43 ~~i~~~l~-~~~~~v~~iM~--~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll-~-----~-  112 (205)
T 3kxr_A           43 QRFELYDQ-YSENEIGRYTD--HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIF-K-----H-  112 (205)
T ss_dssp             HHHHHHHH-SCTTCGGGGCB--CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHT-T-----S-
T ss_pred             HHHHHHhC-CCcchHHhhcc--CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHH-h-----C-
Confidence            44444443 35678999999  6899999999999999999997   789999999 89999999999996 2     1 


Q ss_pred             CCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          107 ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       107 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      ....+++++|+++++++++++++.++++.|.++++..+||+|++|+++|+||..|+++.+..
T Consensus       113 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          113 EPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             CTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            23578999999999999999999999999999999999999999999999999999997543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.82  E-value=5.3e-20  Score=170.10  Aligned_cols=151  Identities=27%  Similarity=0.322  Sum_probs=131.1

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHH----HHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCC
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIE----TLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL   76 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~   76 (270)
                      |+.+++.+++++++++|     |++++|.+..++    .+.+.+   +..+.|.  ++++++++++|+.+++++|.++++
T Consensus        75 MdtvTe~~lAia~a~~G-----giGvIh~~~~~~~q~~~V~~V~---~~~~~m~--~d~v~l~~~~tv~ea~~~m~~~~~  144 (511)
T 3usb_A           75 MDTVTEADMAIAMARQG-----GLGIIHKNMSIEQQAEQVDKVK---RSESGVI--SDPFFLTPEHQVYDAEHLMGKYRI  144 (511)
T ss_dssp             CTTTCSHHHHHHHHHHT-----CEEEECSSSCHHHHHHHHHHHH---TSSSCSS--SSCCCBCTTSBHHHHHHHHHHHCC
T ss_pred             chhhcHHHHHHHHHhcC-----CceeecccCCHHHHHHHHHHhh---ccccccc--cCCEEECCCCCHHHHHHHHHHcCC
Confidence            78899999999999999     999998762222    233333   4567888  689999999999999999999999


Q ss_pred             cEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC-CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCc
Q 024256           77 SSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  152 (270)
Q Consensus        77 ~~i~Vv~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~  152 (270)
                      +++||++   +++++|+||.+|+. .     ......+++++|++ +++++++++++.+++++|.+++.+.+||+|++|+
T Consensus       145 s~~pVvd~g~~~~lvGiVt~rDl~-~-----~~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~  218 (511)
T 3usb_A          145 SGVPVVNNLDERKLVGIITNRDMR-F-----IQDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGV  218 (511)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHT-T-----CCCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSB
T ss_pred             cEEEEEecCCCCEEEEEEEehHhh-h-----hccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence            9999998   57999999999995 2     22335789999998 9999999999999999999999999999999999


Q ss_pred             EEEEEeHHHHHHHHH
Q 024256          153 VVDVVDVIHITHAAV  167 (270)
Q Consensus       153 ~~Givt~~dll~~~~  167 (270)
                      ++|+||.+|+++...
T Consensus       219 l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          219 LQGLITIKDIEKVIE  233 (511)
T ss_dssp             EEEEEEHHHHHHHHH
T ss_pred             EeeeccHHHHHHhhh
Confidence            999999999999753

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.82  E-value=1.6e-19  Score=139.10  Aligned_cols=124  Identities=15%  Similarity=0.181  Sum_probs=106.5

Q ss_pred             CCCCccc---cccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-CCCccchhhc
Q 024256           41 FRPSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLVEKV  115 (270)
Q Consensus        41 ~~~~v~~---im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~-~~~~~~v~~i  115 (270)
                      ...++++   +|.  ++++++++++|+.+|++.|.+++++++||++ +|+++|+++..|++ +.+..+. .....++.++
T Consensus         6 ~~~~v~~~~~~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~v~~~   82 (144)
T 2nyc_A            6 LKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL-GLIKGGIYNDLSLSVGEA   82 (144)
T ss_dssp             GGSBGGGSSCCBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHHHTC----CCSBHHHH
T ss_pred             hhcchhhcCCCCC--CCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHH-HHhcccccccCCccHHHH
Confidence            3556788   887  6899999999999999999999999999999 89999999999998 6555432 1235689999


Q ss_pred             cCC------CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          116 MTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       116 m~~------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      |.+      ++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus        83 m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           83 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            976      6889999999999999999999999999998899999999999998754

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.81  E-value=1.6e-19  Score=145.48  Aligned_cols=122  Identities=23%  Similarity=0.260  Sum_probs=109.5

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-CCCCCccchhhccCC
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTP  118 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~-~~~~~~~~v~~im~~  118 (270)
                      ...+++++|+  ++++++++++|+.+|+++|.+++++++||++ +|+++|+++.+|++ +.+.. .......+++++|.+
T Consensus         7 ~~~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~-~~~~~~~~~~~~~~v~~im~~   83 (184)
T 1pvm_A            7 MFMRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII-KRFIPRNKKPDEVPIRLVMRK   83 (184)
T ss_dssp             CCCBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHH-HHTGGGCCCGGGSBGGGTSBS
T ss_pred             cccCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH-HHHhhcccCcccCCHHHHhCC
Confidence            3468999999  6899999999999999999999999999998 79999999999998 55442 223345789999999


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++++++++++.+|++.|.+++.+++||+|++|+++|+||..||+++
T Consensus        84 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~  130 (184)
T 1pvm_A           84 PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY  130 (184)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence            99999999999999999999999999999988999999999999985

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.81  E-value=6.4e-21  Score=175.66  Aligned_cols=152  Identities=21%  Similarity=0.225  Sum_probs=117.5

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh-CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM-FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA   79 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i   79 (270)
                      |+++++.++++++++.|     |+|++|.+...+...+.+ .-.++.++|.  ++++++++++|+.+++++|.+++++++
T Consensus        51 MdtVTe~~ma~a~a~~G-----GiGvI~~n~s~e~qa~~V~~Vk~~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~  123 (496)
T 4fxs_A           51 MDTVTEARLAIALAQEG-----GIGFIHKNMSIEQQAAQVHQVKIFEAGVV--THPVTVRPEQTIADVMELTHYHGFAGF  123 (496)
T ss_dssp             CTTTCSHHHHHHHHHHT-----CEEEECSSSCHHHHHHHHHHHHHCCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEE
T ss_pred             cchhhHHHHHHHHHHcC-----CcceecCCCCHHHHHHHHHhccccccccc--cCceEECCCCCHHHHHHHHHHcCCcEE
Confidence            88899999999999999     999998763333322211 1135678898  789999999999999999999999999


Q ss_pred             EEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEE
Q 024256           80 VVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV  156 (270)
Q Consensus        80 ~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Gi  156 (270)
                      ||++ +++++|+||.+|+.      .......+++++|++  +++++++++++.+++++|.+++++.+||+|++|+++|+
T Consensus       124 PVvd~~~~lvGiVt~rDL~------~~~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~Gi  197 (496)
T 4fxs_A          124 PVVTENNELVGIITGRDVR------FVTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGM  197 (496)
T ss_dssp             EEECSSSBEEEEEEHHHHT------TCCCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEE
T ss_pred             EEEccCCEEEEEEEHHHHh------hcccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEe
Confidence            9999 89999999999994      122335789999984  58999999999999999999999999999999999999


Q ss_pred             EeHHHHHHH
Q 024256          157 VDVIHITHA  165 (270)
Q Consensus       157 vt~~dll~~  165 (270)
                      ||.+|+++.
T Consensus       198 IT~~DIl~~  206 (496)
T 4fxs_A          198 ITAKDFHKA  206 (496)
T ss_dssp             ECCC-----
T ss_pred             ehHhHHHHh
Confidence            999999986

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.81  E-value=2.6e-19  Score=143.93  Aligned_cols=131  Identities=13%  Similarity=0.166  Sum_probs=110.8

Q ss_pred             HhhCCCCccccccCCCc--eeEE--CCCCCHHHHHHHHHHCCCcEEEEE--e-CCEEEEEeeHHHHHHHHHhcC------
Q 024256           38 ERMFRPSLSTIIPEKSK--VVTI--SPTDTVLMATKKMLELRLSSAVVT--V-ENKPRGILTSKDILMRVISQN------  104 (270)
Q Consensus        38 ~~~~~~~v~~im~~~~~--~~~v--~~~~tv~~a~~~m~~~~~~~i~Vv--~-~~~~~Givt~~dl~~~~~~~~------  104 (270)
                      +.+...+++++|++..+  ++++  ++++|+.+|++.|.+++++++||+  + +|+++|+|+..|++ +.+...      
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~-~~~~~~~~~~~~   84 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLI-ISIENARKKQDG   84 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHH-HHHHHHHTSCSC
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHH-HHHHhhcccCCC
Confidence            45567899999995322  7788  999999999999999999999999  6 89999999999998 554321      


Q ss_pred             ------------------CCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          105 ------------------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       105 ------------------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                                        ......+++++|.++++++++++++.+|++.|.+++.+++||+| +|+++|+||..||++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l  163 (185)
T 2j9l_A           85 VVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHI  163 (185)
T ss_dssp             CCTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                              11235789999999999999999999999999999999999999 89999999999999986


Q ss_pred             HHHh
Q 024256          167 VATV  170 (270)
Q Consensus       167 ~~~~  170 (270)
                      ....
T Consensus       164 ~~~~  167 (185)
T 2j9l_A          164 AQMA  167 (185)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            5543

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.80  E-value=1.2e-18  Score=137.27  Aligned_cols=126  Identities=10%  Similarity=0.159  Sum_probs=108.7

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCC----CCccchh
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLP----ADSTLVE  113 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~  113 (270)
                      ...+++++|.  ++++++++++|+.+|++.|.+++++++||++   +|+++|+||..|++ +.+..+..    ....++.
T Consensus        11 ~~~~v~dim~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~v~   87 (164)
T 2pfi_A           11 HHVRVEHFMN--HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLV-QALQAEPPSRAPGHQQCLQ   87 (164)
T ss_dssp             CSCBHHHHCB--CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHH-HHHHC-------CCCCBHH
T ss_pred             cCCCHHHHcC--CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHH-HHHHhhccccCCcccchhh
Confidence            4568999999  6899999999999999999999999999998   48999999999998 65543321    1235799


Q ss_pred             hccCCC------CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          114 KVMTPN------PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       114 ~im~~~------~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                      ++|.++      ++++++++++.+|++.|.+++.+++||+| +|+++|+||..||++++....
T Consensus        88 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A           88 DILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             HHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHH
T ss_pred             hhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhh
Confidence            999876      78999999999999999999999999999 799999999999999855443

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.79  E-value=6.1e-19  Score=148.48  Aligned_cols=122  Identities=22%  Similarity=0.307  Sum_probs=103.7

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-------------
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-------------  106 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~-------------  106 (270)
                      ...+|+++|+  ++++++++++++.+|+++|.+++++++||+| +|+++|++|..|++ +.+.....             
T Consensus         5 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~-~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            5 VKLKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNIT-ATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CCCBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHH-HHHHCCCCTTHHHHTTCCHHH
T ss_pred             ccCcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHH-HHHHHhhhhhhhhhccCCHHH
Confidence            3678999999  6799999999999999999999999999999 79999999999998 55432210             


Q ss_pred             --------------------------------------------------------------------------------
Q 024256          107 --------------------------------------------------------------------------------  106 (270)
Q Consensus       107 --------------------------------------------------------------------------------  106 (270)
                                                                                                      
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------CCccchhhccC-CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          107 --------------------ADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       107 --------------------~~~~~v~~im~-~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                                          ....+++++|+ +++.++++++++.+|+++|.+++++++||+|++|+++|+||.+|++++
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST  241 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred             HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence                                01346889999 899999999999999999999999999999989999999999999975

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.78  E-value=2.2e-18  Score=147.10  Aligned_cols=166  Identities=16%  Similarity=0.232  Sum_probs=136.4

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      ..+++++|+  ++++++++++++.+|++.|.+++++++||++ +|+++|++|..|++ +.+...... ..+++++|++++
T Consensus        83 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~m~~~~  158 (280)
T 3kh5_A           83 NEPVREIME--ENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI-RALLDKIDE-NEVIDDYITRDV  158 (280)
T ss_dssp             TSBGGGTSB--CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHH-HHHGGGSCT-TCBSGGGCBCSC
T ss_pred             hhhHHHhcC--CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHH-HHHhhcCCC-CCCHHHHhCCCC
Confidence            568999999  6899999999999999999999999999998 89999999999998 666554433 358999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH---------------------HhC-------C
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA---------------------TVG-------N  172 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~---------------------~~~-------~  172 (270)
                      .++++++++.++++.|.+++.+.+||+ ++|+++|+||.+|+++....                     .+.       .
T Consensus       159 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~  237 (280)
T 3kh5_A          159 IVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAK  237 (280)
T ss_dssp             CCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHSBSSCCCBC
T ss_pred             eEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHhcCCCEEEC
Confidence            999999999999999999999999999 58999999999999987521                     110       1


Q ss_pred             CCCChHHHHHHHHHHHHHHhhccCCCCC--CCcccccccccc
Q 024256          173 TAGSNNEAASTMMQKFWDSAMALSPNDD--EEDNRSEGSLKF  212 (270)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~di~~~~  212 (270)
                      ...++.+++..|.......++++.+.+.  +.+|..|+++.+
T Consensus       238 ~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          238 EGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             TTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence            3345567777777777777777765433  238888887765

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.78  E-value=1.1e-20  Score=174.04  Aligned_cols=152  Identities=26%  Similarity=0.281  Sum_probs=29.3

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhh-CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM-FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA   79 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i   79 (270)
                      |+.+++.++++++++.|     |+|++|.+...+...+.. .-.+++++|.  ++++++++++|+.+++++|.+++++++
T Consensus        50 M~tVTe~~lA~ala~~G-----GiGvI~~~~~~e~~a~~v~~vk~~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~  122 (490)
T 4avf_A           50 MDTVTEARLAIAMAQEG-----GIGIIHKNMGIEQQAAEVRKVKKHETAIV--RDPVTVTPSTKIIELLQMAREYGFSGF  122 (490)
T ss_dssp             CTTTCSHHHHHHHHHHT-----SEEEECCSSCHHHHHHHHHHHHHCCC--------------------------------
T ss_pred             hhhhCHHHHHHHHHHcC-----CCccccCCCCHHHHHHHhhhhcccccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEE
Confidence            78899999999999999     999888653333322211 1235788999  689999999999999999999999999


Q ss_pred             EEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEE
Q 024256           80 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV  157 (270)
Q Consensus        80 ~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Giv  157 (270)
                      ||+++++++|+||.+|+. ..     .....+++++|++  +++++++++++.+++++|.+++++.+||+|++|+++|+|
T Consensus       123 pVvd~g~lvGIVt~rDl~-~~-----~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiI  196 (490)
T 4avf_A          123 PVVEQGELVGIVTGRDLR-VK-----PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLV  196 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCEEEEEEEhHHhh-hc-----cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            999999999999999994 21     1235789999994  689999999999999999999999999999999999999


Q ss_pred             eHHHHHHH
Q 024256          158 DVIHITHA  165 (270)
Q Consensus       158 t~~dll~~  165 (270)
                      |.+|+++.
T Consensus       197 T~~Dil~~  204 (490)
T 4avf_A          197 TFRDIEKA  204 (490)
T ss_dssp             --------
T ss_pred             ehHHhhhh
Confidence            99999986

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.78  E-value=1.6e-18  Score=151.34  Aligned_cols=141  Identities=13%  Similarity=0.163  Sum_probs=119.4

Q ss_pred             CCCChhHHHHHHHH-----hhCCCCcccc---ccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHH
Q 024256           25 SISGPNTFIETLRE-----RMFRPSLSTI---IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD   95 (270)
Q Consensus        25 ~~~~~~~~~~~~~~-----~~~~~~v~~i---m~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~d   95 (270)
                      |..+..+.+..+..     .....+++++   |.  ++++++++++++.+|++.|.+++++++||++ +|+++|++|.+|
T Consensus       164 Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~d  241 (323)
T 3t4n_C          164 SVLTQYRILKFVALNCRETHFLKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYD  241 (323)
T ss_dssp             EEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBC--TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTH
T ss_pred             EEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCC--CCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHH
Confidence            44555566655542     2345689999   87  6899999999999999999999999999999 799999999999


Q ss_pred             HHHHHHhcCC-CCCccchhhccCC------CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256           96 ILMRVISQNL-PADSTLVEKVMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus        96 l~~~~~~~~~-~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      ++ +++..+. .....+++++|++      +++++++++++.++++.|.+++++++||+|++|+++|+||.+||++++..
T Consensus       242 l~-~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          242 VL-GLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             HH-HHHHTTHHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             HH-HHHhhchhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            98 6665432 1224689999998      78999999999999999999999999999989999999999999998553

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.78  E-value=7.8e-19  Score=151.56  Aligned_cols=169  Identities=21%  Similarity=0.249  Sum_probs=140.0

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      ..+++++|+  ++++++.+++++.+|++.|.+++++++||++ +|+++|++|.+|++ +.+.....  ..+++++|.+++
T Consensus        92 ~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~-~~~~~~~~--~~~v~~~m~~~~  166 (296)
T 3ddj_A           92 TTPIIDYMT--PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL-LLYKDLDE--IFPVKVFMSTKV  166 (296)
T ss_dssp             TSBGGGTSE--ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHG-GGGGGSCC--CCBHHHHSBCSC
T ss_pred             cccHHHhcc--CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH-Hhhhcccc--cccHHHhhcCCC
Confidence            668999999  5789999999999999999999999999998 89999999999997 55543332  458999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh----------------C-------CCCCCh
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV----------------G-------NTAGSN  177 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~----------------~-------~~~~~~  177 (270)
                      .++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+...+                .       ....++
T Consensus       167 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l  246 (296)
T 3ddj_A          167 QTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASV  246 (296)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCTTSBH
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhCCCCeEECCCCcH
Confidence            99999999999999999999999999998999999999999998754211                0       133456


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCC--CCccccccccccccC
Q 024256          178 NEAASTMMQKFWDSAMALSPNDD--EEDNRSEGSLKFASE  215 (270)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~di~~~~~~~  215 (270)
                      .+++..|.......++++.+.+.  +.+|..|+++.+...
T Consensus       247 ~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~  286 (296)
T 3ddj_A          247 NRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  286 (296)
T ss_dssp             HHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHH
Confidence            67888888777777777764433  338999988877543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.77  E-value=5.3e-18  Score=139.95  Aligned_cols=119  Identities=17%  Similarity=0.198  Sum_probs=107.0

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  119 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~  119 (270)
                      ...+++++|.  ++++++++++|+.+|+++|.+++++++||++ +++++|+||.+|+. +..      ...+++++|+++
T Consensus        11 ~~~~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~-~~~------~~~~v~~im~~~   81 (213)
T 1vr9_A           11 HHMKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL-DLD------LDSSVFNKVSLP   81 (213)
T ss_dssp             --CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT-TSC------TTSBSGGGCBCT
T ss_pred             cccCHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHH-hhc------CCCcHHHHccCC
Confidence            4567899999  7899999999999999999999999999999 89999999999996 322      146899999999


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      ++++++++++.+|++.|.+++++++||+|++|+++|+||.+|+++....
T Consensus        82 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           82 DFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             TCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999999988999999999999987543

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.75  E-value=1e-17  Score=144.33  Aligned_cols=119  Identities=21%  Similarity=0.292  Sum_probs=108.0

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHC-----CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhh
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  114 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~-----~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  114 (270)
                      ...+++++|+  ++++++++++|+.+|++.|.++     +++++||++ +|+++|+||.+|++ +.      ....++++
T Consensus       135 ~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll-~~------~~~~~v~~  205 (286)
T 2oux_A          135 EDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI-VN------DDDTLIAD  205 (286)
T ss_dssp             CTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT-TS------CTTSBHHH
T ss_pred             ChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHH-cC------CCCCcHHH
Confidence            4568999999  6899999999999999999987     788999999 89999999999997 21      23578999


Q ss_pred             ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       115 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      +|+++++++++++++.++++.|.+++.+.+||+|++|+++|+||..|++..+..
T Consensus       206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999999989999999999999987543

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.75  E-value=1.5e-17  Score=142.77  Aligned_cols=117  Identities=21%  Similarity=0.299  Sum_probs=107.0

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHC-----CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhh
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  114 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~-----~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  114 (270)
                      ...+++++|+  ++++++++++|+.+|++.|.++     +++++||++ +|+++|+||.+|++ ..      ....++++
T Consensus       133 ~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll-~~------~~~~~v~~  203 (278)
T 2yvy_A          133 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-VA------DPRTRVAE  203 (278)
T ss_dssp             CTTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHH-HS------CTTCBSTT
T ss_pred             CcchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHh-cC------CCCCcHHH
Confidence            4678999999  6899999999999999999987     789999999 89999999999997 32      13578999


Q ss_pred             ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       115 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      +|.++++++++++++.++++.|.+++...+||+|++|+++|+||..|+++.+
T Consensus       204 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i  255 (278)
T 2yvy_A          204 IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  255 (278)
T ss_dssp             TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred             HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999899999999999999873

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.75  E-value=5.5e-20  Score=170.04  Aligned_cols=155  Identities=23%  Similarity=0.195  Sum_probs=25.7

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChhHHHHHHHHhhCCCCcccc-ccCCCceeEECCCCCHHHHHHHHHHCCCcEE
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTI-IPEKSKVVTISPTDTVLMATKKMLELRLSSA   79 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~i-m~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i   79 (270)
                      |+.+++.++++++++.|     |+++++.+...+...+.+.+.+..++ |+  ++++++++++|+.+++++|.+++++++
T Consensus        59 m~~vt~~~la~~la~~g-----g~G~I~~~~~~e~~~~~v~~V~~~e~gM~--~~~~~v~~~~tv~eal~~m~~~~~s~~  131 (503)
T 1me8_A           59 MQSVSGEKMAIALAREG-----GISFIFGSQSIESQAAMVHAVKNFKAGFV--VSDSNVKPDQTFADVLAISQRTTHNTV  131 (503)
T ss_dssp             CTTTCSHHHHHHHHHTT-----CEEEECCSSCHHHHHHHHHHHHTTTC--------------------------------
T ss_pred             chhhhHHHHHHHHHhCC-----CcceeeCCCCHHHHHHHHhhhhhcccCcc--cCCeEECCCCcHHHHHHHHHHcCceEE
Confidence            67778889999999999     88777754222222222222233455 88  689999999999999999999999999


Q ss_pred             EEEe-C---CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCC--CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcE
Q 024256           80 VVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV  153 (270)
Q Consensus        80 ~Vv~-~---~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~  153 (270)
                      ||++ +   ++++|+||.+|++ +.    ......+++++|+++  ++++++++++.+|+++|.+++++.+||+|++|++
T Consensus       132 pVvd~~~~~g~lvGiVt~~Dl~-~~----~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~l  206 (503)
T 1me8_A          132 AVTDDGTPHGVLLGLVTQRDYP-ID----LTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHL  206 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCcCCeEEEEEEHHHHH-hh----hccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence            9999 5   8999999999996 33    122357899999987  9999999999999999999999999999999999


Q ss_pred             EEEEeHHHHHHHHH
Q 024256          154 VDVVDVIHITHAAV  167 (270)
Q Consensus       154 ~Givt~~dll~~~~  167 (270)
                      +|+||.+||++...
T Consensus       207 vGiIT~~Dil~~~~  220 (503)
T 1me8_A          207 RYIVFRKDYDRSQV  220 (503)
T ss_dssp             --------------
T ss_pred             EEEEEecHHHHhhh
Confidence            99999999999754

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.73  E-value=9.6e-18  Score=143.41  Aligned_cols=170  Identities=22%  Similarity=0.244  Sum_probs=130.9

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHH-HHhcCCCCCccchhhccCCC
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR-VISQNLPADSTLVEKVMTPN  119 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~-~~~~~~~~~~~~v~~im~~~  119 (270)
                      ..+++++|.  ++++++++++++.+|++.|.+++.+++||++ +|+++|++|..|++ + .+..+......+++++|.++
T Consensus        59 ~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~-~~~~~~~~~~~~~~v~~~m~~~  135 (282)
T 2yzq_A           59 EEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII-RRYFAKSEKYKGVEIEPYYQRY  135 (282)
T ss_dssp             -----CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HHTTTTCSGGGGCBSTTTSBSC
T ss_pred             cCCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHH-HHHHhccCCcccCcHHHHhCCC
Confidence            467999999  5689999999999999999999999999999 78999999999998 5 55433222356899999999


Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHH------HHHH------H-------------------
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT------HAAV------A-------------------  168 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll------~~~~------~-------------------  168 (270)
                      ++++++++++.++++.|.+++++.+||+|++|+++|++|..|++      +...      .                   
T Consensus       136 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (282)
T 2yzq_A          136 VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFE  215 (282)
T ss_dssp             CCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-----------------------------
T ss_pred             CEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhh
Confidence            99999999999999999999999999999889999999999998      4321      0                   


Q ss_pred             ---------HhC-------CCCCChHHHHHHHHHHHHHHhhccCCCCC--CCcccccccccccc
Q 024256          169 ---------TVG-------NTAGSNNEAASTMMQKFWDSAMALSPNDD--EEDNRSEGSLKFAS  214 (270)
Q Consensus       169 ---------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~di~~~~~~  214 (270)
                               .+.       ....++.+++..|.......++++.+.+.  +.+|..|+++.+..
T Consensus       216 ~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          216 LQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             ---CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             hhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence                     000       12244556777777777777777764322  33888888887754

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.73  E-value=4.4e-17  Score=142.89  Aligned_cols=140  Identities=15%  Similarity=0.175  Sum_probs=117.7

Q ss_pred             CCCChhHHHHHHHHh-----hCCCCcccc---ccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHH
Q 024256           25 SISGPNTFIETLRER-----MFRPSLSTI---IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD   95 (270)
Q Consensus        25 ~~~~~~~~~~~~~~~-----~~~~~v~~i---m~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~d   95 (270)
                      |.++..+.+..+...     ....+++++   |.  ++++++++++++.+|++.|.+++.+++||++ +|+++|+||..|
T Consensus       159 Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~d  236 (334)
T 2qrd_G          159 SVLTQYRILKFISMNCKETAMLRVPLNQMTIGTW--SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVD  236 (334)
T ss_dssp             EEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHH
T ss_pred             EEeeHHHHHHHHHhhccchhhhhCcHHHhCCccc--CCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHH
Confidence            455566666555432     135678884   87  6889999999999999999999999999999 789999999999


Q ss_pred             HHHHHHhcCC-CCCccchhhccCC------CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256           96 ILMRVISQNL-PADSTLVEKVMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus        96 l~~~~~~~~~-~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      ++ +.+..+. .....++.++|++      +++++++++++.+|++.|.+++++++||+|++|+++|+||..||++++.
T Consensus       237 l~-~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~  314 (334)
T 2qrd_G          237 VM-HLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  314 (334)
T ss_dssp             HH-HHHTTSCGGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HH-HHhhccccccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            98 6665432 2235789999984      8899999999999999999999999999998899999999999999754

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.72  E-value=3.2e-17  Score=138.27  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=103.4

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeC---CEEEEEeeHHHHHHHHHhcC----CC-------
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQN----LP-------  106 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~---~~~~Givt~~dl~~~~~~~~----~~-------  106 (270)
                      ...+|+|+|+  ++++++.+++++.+|.++|.+++++++||+++   ++++|+|+..||+ +++...    ..       
T Consensus        11 ~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~-~~l~~~~~~~~~~~~~~~~   87 (250)
T 2d4z_A           11 YNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVE-GLLQRRISAYRRQPAAAAE   87 (250)
T ss_dssp             SSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHH-HHHHHHHHTTSSSCCCCCC
T ss_pred             CCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHH-HHHHHhhhhhhhhhhhhhc
Confidence            4568999999  78999999999999999999999999999983   6899999999998 443211    00       


Q ss_pred             -----------------------C--------------------------------------------------------
Q 024256          107 -----------------------A--------------------------------------------------------  107 (270)
Q Consensus       107 -----------------------~--------------------------------------------------------  107 (270)
                                             .                                                        
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (250)
T 2d4z_A           88 ADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRF  167 (250)
T ss_dssp             BCCC---------------------------------------------------------------------------C
T ss_pred             ccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccc
Confidence                                   0                                                        


Q ss_pred             ----------------Cccch--h-hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          108 ----------------DSTLV--E-KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       108 ----------------~~~~v--~-~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                                      ...++  . .+|++.++++.+++++.++..+|...+++++||++ .|+++||||++||++++.
T Consensus       168 ~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          168 EEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence                            01122  2 36899999999999999999999999999999998 799999999999999743

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.71  E-value=1.3e-16  Score=147.37  Aligned_cols=151  Identities=22%  Similarity=0.291  Sum_probs=125.7

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCCh----hHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCC
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGP----NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL   76 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~   76 (270)
                      |+.+++.+++.++++.|     |.|.++.    .+..+.+....   .+.++|.  ++++++++++|+.++++.|.++++
T Consensus        52 M~~vt~~eLa~av~~~G-----g~G~i~~~~~~e~~~~~i~~v~---~~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~  121 (491)
T 1zfj_A           52 MDTVTGSKMAIAIARAG-----GLGVIHKNMSITEQAEEVRKVK---RSENGVI--IDPFFLTPEHKVSEAEELMQRYRI  121 (491)
T ss_dssp             CTTTCSHHHHHHHHHTT-----CEEEECCSSCHHHHHHHHHHHH---HHTTTTS--SSCCCBCSSSBHHHHHHHHHHTTC
T ss_pred             chhccHHHHHHHHHHcC-----CceEEeCCCCHHHHHHHHHHHh---hHHhcCc--CCCeEECCCCcHHHHHHHHHHcCC
Confidence            56667778888888888     7665542    23333333222   3578999  689999999999999999999999


Q ss_pred             cEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC-CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCc
Q 024256           77 SSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  152 (270)
Q Consensus        77 ~~i~Vv~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~  152 (270)
                      +.+||++   +++++|+||.+|++ ..    . ....+++++|++ +++++++++++.++++.|.+++.+.+||+|++|+
T Consensus       122 ~~~pVvd~~~~~~lvGivt~~Dl~-~~----~-~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~  195 (491)
T 1zfj_A          122 SGVPIVETLANRKLVGIITNRDMR-FI----S-DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGR  195 (491)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHH-HC----S-CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSB
T ss_pred             CEEEEEEeCCCCEEEEEEEHHHHh-hh----c-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence            9999997   68999999999996 32    1 235789999998 8999999999999999999999999999999999


Q ss_pred             EEEEEeHHHHHHHHH
Q 024256          153 VVDVVDVIHITHAAV  167 (270)
Q Consensus       153 ~~Givt~~dll~~~~  167 (270)
                      ++|++|..||++...
T Consensus       196 lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          196 LSGLITIKDIEKVIE  210 (491)
T ss_dssp             EEEEEEHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHh
Confidence            999999999999754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.70  E-value=7.4e-19  Score=162.52  Aligned_cols=151  Identities=26%  Similarity=0.311  Sum_probs=27.7

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChh----HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCC
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPN----TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL   76 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~   76 (270)
                      |+.+++..+++++++.|     |+++++.+    +....+...   .++.++|+  ++++++++++|+.+|+++|.++++
T Consensus        57 m~~v~~~~lA~al~~~G-----glG~i~~~~~~e~~~~~v~~v---~~~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~  126 (494)
T 1vrd_A           57 MDTVTEAALAKALAREG-----GIGIIHKNLTPDEQARQVSIV---KKTENGII--YDPITVTPDMTVKEAIDLMAEYKI  126 (494)
T ss_dssp             CTTTCSHHHHHHHHTTT-----CEEEECSSSCHHHHHHHHHHH---HTC-------------------------------
T ss_pred             hHHHhHHHHHHHHHHcC-----CceEEecCCChHHHHHHHHhh---hhHhhcCc--cCCeEECCCCCHHHHHHHHHHcCc
Confidence            67778888888999999     87666644    222222222   25788999  689999999999999999999999


Q ss_pred             cEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcE
Q 024256           77 SSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV  153 (270)
Q Consensus        77 ~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~  153 (270)
                      +.+||++ +++++|+||.+|+. +.  .   ....++.++|++  +++++++++++.+++++|.+++++.+||+|++|++
T Consensus       127 ~~~pVvd~~~~lvGivt~~Dl~-~~--~---~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~l  200 (494)
T 1vrd_A          127 GGLPVVDEEGRLVGLLTNRDVR-FE--K---NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKL  200 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEcCCCEEEEEEEHHHHH-hh--c---CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence            9999999 78999999999996 32  1   135789999998  99999999999999999999999999999999999


Q ss_pred             EEEEeHHHHHHHHH
Q 024256          154 VDVVDVIHITHAAV  167 (270)
Q Consensus       154 ~Givt~~dll~~~~  167 (270)
                      +|+||..|+++...
T Consensus       201 vGiIt~~Dll~~~~  214 (494)
T 1vrd_A          201 VGLITIKDIMSVIE  214 (494)
T ss_dssp             --------CHHHHT
T ss_pred             EEEEEHHHHHhhhc
Confidence            99999999999743

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.70  E-value=5.6e-17  Score=151.03  Aligned_cols=122  Identities=11%  Similarity=0.073  Sum_probs=107.0

Q ss_pred             CCCccccccCCCceeEECCC-CCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC
Q 024256           42 RPSLSTIIPEKSKVVTISPT-DTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  118 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~-~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~  118 (270)
                      ..+|+++|+  ++++++.++ +|+.+|+++|.+++++++||++  +++++|+||.+|++ +.+..+......+++++|++
T Consensus       383 ~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll-~~l~~~~~~~~~~V~~im~~  459 (527)
T 3pc3_A          383 SLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLI-TQIVSMNRQQSDPAIKALNK  459 (527)
T ss_dssp             TSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHH-HHHHHHCCCTTSBGGGGEET
T ss_pred             CCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHH-HHHHhccCcCCCcHHHHhcC
Confidence            467999999  789999999 9999999999999999999998  78999999999998 44443333345799999999


Q ss_pred             CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC----CcEEEEEeHHHHHHHHHH
Q 024256          119 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD----GDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       119 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~----g~~~Givt~~dll~~~~~  168 (270)
                      +++++++++++.+++++|.+++  .+||+|++    |+++|+||..||++++..
T Consensus       460 ~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          460 RVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             TCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             CCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence            9999999999999999997765  57999974    899999999999998553

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.69  E-value=2.7e-16  Score=144.42  Aligned_cols=118  Identities=21%  Similarity=0.291  Sum_probs=107.1

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHC-----CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhh
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  114 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~-----~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  114 (270)
                      ...+++++|+  ++++++++++|+.+|++.|.++     +++++||+| +++++|++|.+|++ ..      ..+.++++
T Consensus       153 ~~~~v~~iM~--~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll-~~------~~~~~v~d  223 (473)
T 2zy9_A          153 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-VA------DPRTRVAE  223 (473)
T ss_dssp             CTTBSTTTCB--SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHH-HS------CTTSBGGG
T ss_pred             CCCCHHHhCC--CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHh-cC------CCCCcHHH
Confidence            4668999999  6899999999999999999986     578999999 79999999999997 31      13578999


Q ss_pred             ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       115 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      +|+++++++++++++.++++.|.+++...+||+|++|+++|+||..|+++...
T Consensus       224 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          224 IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHH
Confidence            99999999999999999999999999999999999999999999999998743

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.68  E-value=2.1e-17  Score=156.84  Aligned_cols=123  Identities=11%  Similarity=0.003  Sum_probs=105.1

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHH-HCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC------------
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKML-ELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP------------  106 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~-~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~------------  106 (270)
                      ...+|+|+|+|+++++++++++|+.++.+.|. +++++.+||+| +++++|+|+.+|+. +.+.+...            
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~-~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIV-DRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHT-TTTTTC--------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHH-HHHHHHhhhcccccccccce
Confidence            45689999998788999999999999999999 79999999999 79999999999997 44432210            


Q ss_pred             -----------------------------------CCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC
Q 024256          107 -----------------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG  151 (270)
Q Consensus       107 -----------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g  151 (270)
                                                         ....+++++|+++++++++++++.++++.|.+++.+++||+ ++|
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G  608 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG  608 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence                                               00013788999999999999999999999999999999999 689


Q ss_pred             cEEEEEeHHHHHHH
Q 024256          152 DVVDVVDVIHITHA  165 (270)
Q Consensus       152 ~~~Givt~~dll~~  165 (270)
                      +++|+||.+|++++
T Consensus       609 ~lvGIVT~~Dll~~  622 (632)
T 3org_A          609 KLVGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEEEGGGTEEC
T ss_pred             EEEEEEehhhHHHH
Confidence            99999999999874

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.66  E-value=4.2e-16  Score=136.46  Aligned_cols=141  Identities=16%  Similarity=0.182  Sum_probs=113.8

Q ss_pred             CCCChhHHHHHHHHhhCC--------CCcccc--ccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeH
Q 024256           25 SISGPNTFIETLRERMFR--------PSLSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS   93 (270)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~--------~~v~~i--m~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~   93 (270)
                      |.++..+.+..+......        .+++++  |. .++++++++++++.++++.|.+++++++||++ +|+++|++|.
T Consensus       164 Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~  242 (330)
T 2v8q_E          164 YILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSK  242 (330)
T ss_dssp             EEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEG
T ss_pred             EEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccC-cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEH
Confidence            455666666666543222        334444  32 14688999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHHhcC-CCCCccchhhcc------CCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256           94 KDILMRVISQN-LPADSTLVEKVM------TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus        94 ~dl~~~~~~~~-~~~~~~~v~~im------~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      .|++ +.+... ......++.++|      +++++++++++++.++++.|.+++++++||+|++|+++|+||..||++++
T Consensus       243 ~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~  321 (330)
T 2v8q_E          243 FDVI-NLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL  321 (330)
T ss_dssp             GGTG-GGGGSSCCCCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHH-HHHhccccccccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Confidence            9998 555432 222246899998      47899999999999999999999999999999889999999999999975


Q ss_pred             H
Q 024256          167 V  167 (270)
Q Consensus       167 ~  167 (270)
                      .
T Consensus       322 ~  322 (330)
T 2v8q_E          322 V  322 (330)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.63  E-value=5e-17  Score=149.79  Aligned_cols=147  Identities=29%  Similarity=0.391  Sum_probs=23.3

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChh----HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCC
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPN----TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL   76 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~   76 (270)
                      |...++.+++.++++.|     |+|.++.+    +..+.+....   ...+.|.  .+++++++++|+.++++.|.++++
T Consensus        55 m~~vt~~ela~ava~~G-----glG~i~~~~~~e~~~~~I~~v~---~~~~~m~--~~~~~v~~~~tv~ea~~~~~~~~~  124 (486)
T 2cu0_A           55 MDTVTEWEMAVAMAREG-----GLGVIHRNMGIEEQVEQVKRVK---RAERLIV--EDVITIAPDETVDFALFLMEKHGI  124 (486)
T ss_dssp             CTTTCSHHHHHHHHHTT-----CEEEECSSSCHHHHHHHHHHHH---TCC------------------------------
T ss_pred             ceeecHHHHHHHHHhcC-----CceeecCCCCHHHHHHHHHhhc---chhhccc--cCceEECCCCCHHHHHHHHHHcCC
Confidence            56667788899999988     77766632    2233333222   3467888  789999999999999999999999


Q ss_pred             cEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEE
Q 024256           77 SSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV  156 (270)
Q Consensus        77 ~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Gi  156 (270)
                      +.+||+++++++|+|+.+|++ .       ....++.++|+++++++++++++.++++.|.+++.+.+||+|++|+++|+
T Consensus       125 ~~~pVvd~~~lvGivt~~Dl~-~-------~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGi  196 (486)
T 2cu0_A          125 DGLPVVEDEKVVGIITKKDIA-A-------REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGL  196 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEECCEEEEEEEHHHhc-c-------CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEE
Confidence            999999989999999999996 3       13568999999899999999999999999999999999999999999999


Q ss_pred             EeHHHHHHH
Q 024256          157 VDVIHITHA  165 (270)
Q Consensus       157 vt~~dll~~  165 (270)
                      ||.+||++.
T Consensus       197 iT~~Dil~~  205 (486)
T 2cu0_A          197 ITMSDLVAR  205 (486)
T ss_dssp             ---------
T ss_pred             EEHHHHHHh
Confidence            999999987

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.58  E-value=1.8e-17  Score=153.91  Aligned_cols=151  Identities=25%  Similarity=0.310  Sum_probs=91.7

Q ss_pred             ChhhhhhhHHHHHHHhhhHHhhCCCCCChh----HHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCC
Q 024256            1 MERAAEKGKAIAAAVEGVEKHWGTSISGPN----TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL   76 (270)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~   76 (270)
                      |+.+++.+++.++++.|     |.++++.+    +..+.+...   .++.++|.  ++++++++++|+.+|+++|.++++
T Consensus        70 md~~t~~~la~~ia~~g-----g~gii~~~~t~e~~~~~v~~v---~~~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~  139 (514)
T 1jcn_A           70 MDTVTEADMAIAMALMG-----GIGFIHHNCTPEFQANEVRKV---KNFEQGFI--TDPVVLSPSHTVGDVLEAKMRHGF  139 (514)
T ss_dssp             CTTTCSHHHHHHHHHTT-----CEEEECCSSCHHHHHHHHHHH---HTCCTTSC--SSCCCCCC----------------
T ss_pred             hhhhhhhhHHHHHHhcC-----CeeEEecCCCHHHHHHHHHhh---hhhhhccc--cCCEEECCCCCHHHHHHHHHhcCC
Confidence            67778888899999888     76665432    222222222   26889998  678999999999999999999999


Q ss_pred             cEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC
Q 024256           77 SSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD  150 (270)
Q Consensus        77 ~~i~Vv~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~  150 (270)
                      +.+||+++    ++++|+||.+|+. +...   .....++.++|++  +++++++++++.+++++|.+++.+.+||+|++
T Consensus       140 ~~~pVvd~~~~~~~lvGiVt~~Dl~-~~~~---~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~  215 (514)
T 1jcn_A          140 SGIPITETGTMGSKLVGIVTSRDID-FLAE---KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDC  215 (514)
T ss_dssp             -CEESCC--------CCEECTTTTC--------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSS
T ss_pred             CEEEEEeCCCcCCEEEEEEEHHHHH-hhhh---ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCC
Confidence            99999984    7999999999995 3211   1234689999998  99999999999999999999999999999999


Q ss_pred             CcEEEEEeHHHHHHH
Q 024256          151 GDVVDVVDVIHITHA  165 (270)
Q Consensus       151 g~~~Givt~~dll~~  165 (270)
                      |+++|+||.+|+++.
T Consensus       216 g~lvGiIt~~Dll~~  230 (514)
T 1jcn_A          216 DELVAIIARTDLKKN  230 (514)
T ss_dssp             SCCC----CCCCSSC
T ss_pred             CeEEEEEEHHHHHHH
Confidence            999999999998875

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.58  E-value=7.9e-15  Score=113.53  Aligned_cols=140  Identities=15%  Similarity=0.236  Sum_probs=86.3

Q ss_pred             EEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256           89 GILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA  165 (270)
Q Consensus        89 Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~  165 (270)
                      |.++..+-  +.+.+.......+++++|++  +++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.
T Consensus         4 g~l~~~e~--~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   81 (148)
T 3lv9_A            4 GLIDESEQ--RLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ   81 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred             CccCHHHH--HHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            44444332  44444444556899999998  89999999999999999999999999999987 899999999999986


Q ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCC
Q 024256          166 AVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG  245 (270)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g  245 (270)
                      .....   ..++.+.        ......+.    ...+..++...+...          ..        ...+|+|++|
T Consensus        82 ~~~~~---~~~v~~~--------m~~~~~v~----~~~~l~~~~~~m~~~----------~~--------~~l~Vvd~~g  128 (148)
T 3lv9_A           82 KINEN---KIELEEI--------LRDIIYIS----ENLTIDKALERIRKE----------KL--------QLAIVVDEYG  128 (148)
T ss_dssp             HHHHS---CCCGGGT--------CBCCEEEE----TTSBHHHHHHHHHHH----------TC--------SEEEEECTTS
T ss_pred             HhcCC---CccHHHh--------cCCCeEEC----CCCCHHHHHHHHHhc----------CC--------eEEEEEeCCC
Confidence            33210   0000000        00000000    001222222222100          11        1377999999


Q ss_pred             CeeEeecCCCChHHHHHhhhhh
Q 024256          246 LMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       246 ~l~~~~vGivs~~Dil~~i~~~  267 (270)
                      ++    +|+||++|+++++..+
T Consensus       129 ~~----~Giit~~dil~~l~~~  146 (148)
T 3lv9_A          129 GT----SGVVTIEDILEEIVGE  146 (148)
T ss_dssp             SE----EEEEEHHHHHHHHHHT
T ss_pred             CE----EEEEEHHHHHHHHhCc
Confidence            99    9999999999998664

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.56  E-value=1.2e-14  Score=113.88  Aligned_cols=58  Identities=17%  Similarity=0.213  Sum_probs=52.9

Q ss_pred             cchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          110 TLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       110 ~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      .+++++|+|  ++.++++++|+.+|+++|.+++++++||+|++|+++|+||.+|++++..
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~   74 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQM   74 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHH
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhh
Confidence            478999987  7899999999999999999999999999998899999999999998744

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.56  E-value=2.9e-15  Score=118.88  Aligned_cols=57  Identities=16%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+|+++|+++++++++++++.+|++.|.+++++.+||+|++|+++|+||.+||++.
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~   73 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRG   73 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGG
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999875

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.53  E-value=2.4e-14  Score=96.70  Aligned_cols=69  Identities=30%  Similarity=0.415  Sum_probs=62.3

Q ss_pred             eeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeee
Q 024256           55 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  123 (270)
Q Consensus        55 ~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v  123 (270)
                      +++++|++|+.+|+++|.+++++++||+++|+++|++|.+|+++++..++.+..+.+++++|+++++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            689999999999999999999999999999999999999999866676666666789999999988764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.53  E-value=3.9e-14  Score=112.65  Aligned_cols=142  Identities=13%  Similarity=0.204  Sum_probs=82.0

Q ss_pred             EEEEeeHHHHHHHHHhcCCCCCccchhhccC--CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHH
Q 024256           87 PRGILTSKDILMRVISQNLPADSTLVEKVMT--PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHIT  163 (270)
Q Consensus        87 ~~Givt~~dl~~~~~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll  163 (270)
                      -.|.++..+-  +.+.+.......+++++|+  ++++++++++++.+|++.|.+++++++||+|++ |+++|+||.+||+
T Consensus        21 ~~g~l~~~e~--~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~   98 (172)
T 3lhh_A           21 SAGVIEHNEH--AMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLL   98 (172)
T ss_dssp             ------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHH
T ss_pred             HcCCCCHHHH--HHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHH
Confidence            3456655442  3343334445678999999  678999999999999999999999999999987 9999999999999


Q ss_pred             HHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecC
Q 024256          164 HAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDN  243 (270)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~  243 (270)
                      +....   ....++.+.        ......+.+    ..+..++...+...          ..        -..+|+|+
T Consensus        99 ~~~~~---~~~~~v~~i--------m~~~~~v~~----~~~l~~a~~~m~~~----------~~--------~~~pVvd~  145 (172)
T 3lhh_A           99 SESIA---GERLELVDL--------VKNCNFVPN----SLSGMELLEHFRTT----------GS--------QMVFVVDE  145 (172)
T ss_dssp             HHHHT---TCCCCGGGG--------CBCCEEEET----TCCHHHHHHHHHHH----------TC--------SEEEEECT
T ss_pred             HHHhh---cCcccHHHH--------hcCCeEeCC----CCCHHHHHHHHHHc----------CC--------eEEEEEeC
Confidence            86321   101111100        000000000    01222222222100          11        13679999


Q ss_pred             CCCeeEeecCCCChHHHHHhhhhh
Q 024256          244 KGLMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       244 ~g~l~~~~vGivs~~Dil~~i~~~  267 (270)
                      +|++    +|+||++|+++++..+
T Consensus       146 ~g~l----vGiit~~Dil~~l~~~  165 (172)
T 3lhh_A          146 YGDL----KGLVTLQDMMDALTGE  165 (172)
T ss_dssp             TSCE----EEEEEHHHHHHHHHTT
T ss_pred             CCCE----EEEeeHHHHHHHHhCC
Confidence            9999    9999999999998654

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.48  E-value=1e-13  Score=104.90  Aligned_cols=122  Identities=14%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 024256          109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMM  185 (270)
Q Consensus       109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~  185 (270)
                      ..+++++|++  +++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.....  .....+.+    .+
T Consensus         5 ~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--~~~~~v~~----~m   78 (130)
T 3i8n_A            5 DVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG--SGQKQLGA----VM   78 (130)
T ss_dssp             --CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT--TTTSBHHH----HS
T ss_pred             cCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC--CCcCCHHH----Hh
Confidence            4689999995  56689999999999999999999999999987 8999999999999874321  01111111    11


Q ss_pred             HHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhh
Q 024256          186 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTN  265 (270)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~  265 (270)
                          .....+.+    ..+..++.+.+...          ..        ...+|+|++|++    +|++|++|+++++.
T Consensus        79 ----~~~~~v~~----~~~l~~~~~~m~~~----------~~--------~~~~Vvd~~g~~----vGivt~~dil~~l~  128 (130)
T 3i8n_A           79 ----RPIQVVLN----NTALPKVFDQMMTH----------RL--------QLALVVDEYGTV----LGLVTLEDIFEHLV  128 (130)
T ss_dssp             ----EECCEEET----TSCHHHHHHHHHHH----------TC--------CEEEEECTTSCE----EEEEEHHHHHHHHH
T ss_pred             ----cCCcCcCC----CCcHHHHHHHHHHc----------CC--------eEEEEEcCCCCE----EEEEEHHHHHHHHc
Confidence                11111111    12233333333111          11        137799999999    99999999999886


Q ss_pred             h
Q 024256          266 Y  266 (270)
Q Consensus       266 ~  266 (270)
                      .
T Consensus       129 g  129 (130)
T 3i8n_A          129 G  129 (130)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.47  E-value=1.8e-13  Score=109.07  Aligned_cols=141  Identities=13%  Similarity=0.133  Sum_probs=90.8

Q ss_pred             EEEEeeHHHHHHHHHhcCCCCCccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHH
Q 024256           87 PRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHIT  163 (270)
Q Consensus        87 ~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll  163 (270)
                      --|.++..+-  +.+.+.......+++++|++  +++++++++++.+|++.|.+++++++||+|++ |+++|+||.+||+
T Consensus        15 ~~g~l~~~e~--~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~   92 (173)
T 3ocm_A           15 AVPAFGVEER--NMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLV   92 (173)
T ss_dssp             ---CCCHHHH--HHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHH
T ss_pred             hcCCcCHHHH--HHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHH
Confidence            3478885553  33332223345789999975  68899999999999999999999999999976 8999999999999


Q ss_pred             HHHHHHhCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecC
Q 024256          164 HAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDN  243 (270)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~  243 (270)
                      .......   ..++.     ++    ..+..+.    ...+..++...+..          ....        ..+|+|+
T Consensus        93 ~~~~~~~---~~~v~-----~~----~~~~~v~----~~~~l~~al~~m~~----------~~~~--------~~~Vvde  138 (173)
T 3ocm_A           93 ADLITEG---RVRRN-----RL----RDPIIVH----ESIGILRLMDTLKR----------SRGQ--------LVLVADE  138 (173)
T ss_dssp             HHHHHHS---SCCGG-----GS----BCCCEEC----GGGCHHHHHHHHHH----------STTC--------CEEEECT
T ss_pred             HHHhcCC---cchhH-----hc----CCCeEEC----CCCcHHHHHHHHHH----------cCCe--------EEEEEeC
Confidence            8743210   00000     00    0000000    01222333333311          1111        3679999


Q ss_pred             CCCeeEeecCCCChHHHHHhhhhh
Q 024256          244 KGLMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       244 ~g~l~~~~vGivs~~Dil~~i~~~  267 (270)
                      +|++    +||||++||++++..+
T Consensus       139 ~g~l----vGiIT~~Dil~~l~~~  158 (173)
T 3ocm_A          139 FGAI----EGLVTPIDVFEAIAGE  158 (173)
T ss_dssp             TCCE----EEEECHHHHHHHHHCC
T ss_pred             CCCE----EEEEeHHHHHHHHhCc
Confidence            9999    9999999999998643

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.47  E-value=4.5e-14  Score=106.44  Aligned_cols=122  Identities=15%  Similarity=0.212  Sum_probs=82.3

Q ss_pred             ccchhhccCCC--CeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 024256          109 STLVEKVMTPN--PECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMM  185 (270)
Q Consensus       109 ~~~v~~im~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~  185 (270)
                      +.+++++|+++  ++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++....  .....++.+.    +
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~--~~~~~~v~~~----m   75 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS--DAEAFSMDKV----L   75 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST--TCCCCCHHHH----C
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc--cCCCCCHHHH----c
Confidence            35799999965  8999999999999999999999999999987 899999999999975221  1111111111    1


Q ss_pred             HHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhh
Q 024256          186 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTN  265 (270)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~  265 (270)
                          .....+.    ...+..++.+.+...          ..        -..+|+|++|++    +|++|++|+++++.
T Consensus        76 ----~~~~~v~----~~~~l~~a~~~m~~~----------~~--------~~lpVvd~~g~~----~Giit~~dll~~l~  125 (127)
T 3nqr_A           76 ----RTAVVVP----ESKRVDRMLKEFRSQ----------RY--------HMAIVIDEFGGV----SGLVTIEDILELIV  125 (127)
T ss_dssp             ----BCCCEEE----TTCBHHHHHHHHHHT----------TC--------CEEEEECTTSCE----EEEEEHHHHHHHC-
T ss_pred             ----CCCeEEC----CCCcHHHHHHHHHhc----------CC--------eEEEEEeCCCCE----EEEEEHHHHHHHHh
Confidence                1111111    012233333333111          11        137899999999    99999999999875


Q ss_pred             h
Q 024256          266 Y  266 (270)
Q Consensus       266 ~  266 (270)
                      .
T Consensus       126 g  126 (127)
T 3nqr_A          126 G  126 (127)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.46  E-value=1.6e-13  Score=102.23  Aligned_cols=118  Identities=19%  Similarity=0.289  Sum_probs=81.5

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWD  190 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (270)
                      +++++|++++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.....    ..+.            .
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~----~~~v------------~   65 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN----KKTI------------E   65 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT----CCBG------------G
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc----ccCH------------H
Confidence            68999999999999999999999999999999999999899999999999999863221    0001            0


Q ss_pred             HhhccCCCC-CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          191 SAMALSPND-DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       191 ~~~~~~~~~-~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      .++.-.... ....+..++.+.+...          ..        ..++|+|++|++    +|++|.+|+++.+..
T Consensus        66 ~~~~~~~~~v~~~~~l~~~~~~~~~~----------~~--------~~l~Vvd~~g~~----~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           66 EIMTRNVITAHEDEPVDHVAIKMSKY----------NI--------SGVPVVDDYRRV----VGIVTSEDISRLFGG  120 (122)
T ss_dssp             GTSBSSCCCEETTSBHHHHHHHHHHH----------TC--------SEEEEECTTCBE----EEEEEHHHHHHHHC-
T ss_pred             HHhcCCCeEECCCCCHHHHHHHHHHh----------CC--------CeEEEECCCCCE----EEEEeHHHHHHHhhc
Confidence            110000000 0012222333222111          11        137899999999    999999999998864

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.46  E-value=3.8e-13  Score=101.36  Aligned_cols=56  Identities=14%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|.+++.++++++++.+|++.|.+++.+.+||+|+ |+++|+||.+|+++.
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~   59 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEG   59 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTT
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHH
Confidence            46899999999999999999999999999999999999998 999999999999974

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.46  E-value=1e-13  Score=104.73  Aligned_cols=121  Identities=14%  Similarity=0.208  Sum_probs=82.3

Q ss_pred             ccchhhccC--CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 024256          109 STLVEKVMT--PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMM  185 (270)
Q Consensus       109 ~~~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~  185 (270)
                      +.+++++|+  ++++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++...    .......+.    +
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~----~~~~~v~~~----m   75 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML----EPALDIRSL----V   75 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT----CTTSCGGGG----C
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc----cCCcCHHHH----h
Confidence            468999999  577899999999999999999999999999975 89999999999997521    111111110    0


Q ss_pred             HHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhh
Q 024256          186 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTN  265 (270)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~  265 (270)
                          .....+.    ...+..++...+...          .        .-..+|+|++|++    +|++|++|+++++.
T Consensus        76 ----~~~~~v~----~~~~l~~~~~~m~~~----------~--------~~~~pVvd~~g~~----~Giit~~Dil~~l~  125 (129)
T 3jtf_A           76 ----RPAVFIP----EVKRLNVLLREFRAS----------R--------NHLAIVIDEHGGI----SGLVTMEDVLEQIV  125 (129)
T ss_dssp             ----BCCCEEE----TTCBHHHHHHHHHTS----------S--------CCEEEEECC-CCE----EEEEEHHHHHHHHH
T ss_pred             ----CCCeEeC----CCCcHHHHHHHHHhc----------C--------CeEEEEEeCCCCE----EEEEEHHHHHHHHh
Confidence                0000000    012233333333111          1        1137799999999    99999999999986


Q ss_pred             hh
Q 024256          266 YE  267 (270)
Q Consensus       266 ~~  267 (270)
                      .+
T Consensus       126 ge  127 (129)
T 3jtf_A          126 GD  127 (129)
T ss_dssp             HT
T ss_pred             CC
Confidence            54

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.45  E-value=1.8e-13  Score=112.09  Aligned_cols=121  Identities=10%  Similarity=0.061  Sum_probs=84.4

Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhC---CCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHH
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDG---KFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTM  184 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~---~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~  184 (270)
                      ...+++++|+++++++++++++.+|++.|.+.   +++++||+|++|+++|+||.+||+..      .....+       
T Consensus        52 ~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~------~~~~~v-------  118 (205)
T 3kxr_A           52 SENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH------EPHEPL-------  118 (205)
T ss_dssp             CTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS------CTTSBG-------
T ss_pred             CcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC------CCcchH-------
Confidence            35689999999999999999999999999987   78999999999999999999999853      111111       


Q ss_pred             HHHHHHHhhccCCCC-CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHh
Q 024256          185 MQKFWDSAMALSPND-DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEV  263 (270)
Q Consensus       185 ~~~~~~~~~~~~~~~-~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~  263 (270)
                           ..++.-.... ....+..++.+.+.          .+...        ..+|+|++|++    +|+||.+|+++.
T Consensus       119 -----~~im~~~~~~v~~~~~l~~a~~~m~----------~~~~~--------~lpVVD~~g~l----vGiIT~~Dil~~  171 (205)
T 3kxr_A          119 -----ISLLSEDSRALTANTTLLDAAEAIE----------HSREI--------ELPVIDDAGEL----IGRVTLRAATAL  171 (205)
T ss_dssp             -----GGGCCSSCCCEETTSCHHHHHHHHH----------TSSCS--------EEEEECTTSBE----EEEEEHHHHHHH
T ss_pred             -----HHHhcCCCeEECCCCCHHHHHHHHH----------hcCCC--------EEEEEcCCCeE----EEEEEHHHHHHH
Confidence                 1111000000 00122233333331          11111        47899999999    999999999999


Q ss_pred             hhhhc
Q 024256          264 TNYEY  268 (270)
Q Consensus       264 i~~~~  268 (270)
                      +..++
T Consensus       172 i~~e~  176 (205)
T 3kxr_A          172 VREHY  176 (205)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97654

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.45  E-value=1e-13  Score=105.04  Aligned_cols=124  Identities=13%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             cchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeC-CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 024256          110 TLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQ  186 (270)
Q Consensus       110 ~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~  186 (270)
                      .+++++|++  +++++++++++.+|++.|.+++++++||+++ +|+++|+||.+|++++...   +.... .....    
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~---~~~~~-~~~v~----   73 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---KKEFT-KEIML----   73 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTS---SSCCC-HHHHH----
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhc---cCccc-hhhHH----
Confidence            478999975  6889999999999999999999999999975 5899999999999986321   11101 11111    


Q ss_pred             HHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          187 KFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       187 ~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      +.......+.+    ..+..++.+.+....          .        -..+|+|++|++    +|++|++|+++++..
T Consensus        74 ~~m~~~~~v~~----~~~l~~~~~~m~~~~----------~--------~~~~Vvd~~g~l----vGiit~~Dil~~l~g  127 (130)
T 3hf7_A           74 RAADEIYFVPE----GTPLSTQLVKFQRNK----------K--------KVGLVVDEYGDI----QGLVTVEDILEEIVG  127 (130)
T ss_dssp             HHSBCCCEEET----TCBHHHHHHHHHHHC----------C--------CEEEEECTTSCE----EEEEEHHHHHHHHHC
T ss_pred             HhccCCeEeCC----CCcHHHHHHHHHhcC----------C--------eEEEEEcCCCCE----EEEeeHHHHHHHHhC
Confidence            11111111111    123334444442111          1        136799999999    999999999999876


Q ss_pred             h
Q 024256          267 E  267 (270)
Q Consensus       267 ~  267 (270)
                      +
T Consensus       128 ~  128 (130)
T 3hf7_A          128 D  128 (130)
T ss_dssp             -
T ss_pred             C
Confidence            5

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.43  E-value=8.2e-14  Score=109.36  Aligned_cols=60  Identities=25%  Similarity=0.363  Sum_probs=55.5

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      ..+++++|+++++++++++++.+|++.|.+++++.+||+|++|+++|+||..||++....
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   63 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES   63 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH
Confidence            368999999999999999999999999999999999999988999999999999987543

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.43  E-value=5.1e-13  Score=103.91  Aligned_cols=122  Identities=16%  Similarity=0.191  Sum_probs=82.8

Q ss_pred             ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEE-eC-CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHH
Q 024256          109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVV-DR-DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTM  184 (270)
Q Consensus       109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVv-d~-~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~  184 (270)
                      ..+++++|++  +++++++++++.+|++.|.+++++++||+ |+ +|+++|+||.+||++......   ..++.+     
T Consensus        19 ~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~---~~~v~~-----   90 (153)
T 3oco_A           19 DKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD---KAKIST-----   90 (153)
T ss_dssp             HCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT---TSBGGG-----
T ss_pred             CCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC---CCcHHH-----
Confidence            4689999997  89999999999999999999999999999 64 489999999999998633211   000000     


Q ss_pred             HHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256          185 MQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVT  264 (270)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i  264 (270)
                         .......+.    ...+..++...+.          .....        ..+|+|++|++    +|+||++|+++++
T Consensus        91 ---~m~~~~~v~----~~~~l~~~~~~m~----------~~~~~--------~lpVvd~~g~~----vGivt~~dil~~l  141 (153)
T 3oco_A           91 ---IMRDIVSVP----ENMKVPDVMEEMS----------AHRVP--------MAIVIDEYGGT----SGIITDKDVYEEL  141 (153)
T ss_dssp             ---TCBCCEEEE----TTSBHHHHHHHHH----------HTTCS--------CEEEECTTSCE----EEEECHHHHHHHH
T ss_pred             ---HhCCCeEEC----CCCCHHHHHHHHH----------HcCCc--------EEEEEeCCCCE----EEEeeHHHHHHHH
Confidence               000000000    0122223333331          11112        37899999999    9999999999998


Q ss_pred             hhh
Q 024256          265 NYE  267 (270)
Q Consensus       265 ~~~  267 (270)
                      ..+
T Consensus       142 ~~~  144 (153)
T 3oco_A          142 FGN  144 (153)
T ss_dssp             HC-
T ss_pred             hcc
Confidence            654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.41  E-value=1.1e-13  Score=105.65  Aligned_cols=57  Identities=16%  Similarity=0.169  Sum_probs=52.1

Q ss_pred             ccchhhccC--CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC-CcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMT--PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-g~~~Givt~~dll~~  165 (270)
                      +.+++++|+  ++++++++++++.+|++.|.+++++++||+|++ |+++|+||.+||+++
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~   61 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPL   61 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGG
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            357999998  568999999999999999999999999999987 899999999999975

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.41  E-value=1.5e-12  Score=98.56  Aligned_cols=56  Identities=21%  Similarity=0.276  Sum_probs=52.8

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|++++.++++++++.+|++.|.+++.+.+||+| +|+++|+||..|+++.
T Consensus         3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~   58 (133)
T 2ef7_A            3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKA   58 (133)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHH
Confidence            4689999999999999999999999999999999999999 8999999999999875

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.39  E-value=8.5e-13  Score=102.07  Aligned_cols=57  Identities=16%  Similarity=0.264  Sum_probs=53.3

Q ss_pred             ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|++  +++++++++++.+|++.|.+++++++||+|++|+++|+||.+||++.
T Consensus        14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~   72 (150)
T 3lqn_A           14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDG   72 (150)
T ss_dssp             HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHH
Confidence            4689999995  58999999999999999999999999999989999999999999986

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.39  E-value=4.9e-13  Score=99.94  Aligned_cols=121  Identities=17%  Similarity=0.182  Sum_probs=81.7

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWD  190 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (270)
                      +++++|++++.++++++++.+|++.|.+++.+.+||+| +|+++|+||.+|+++...........+..+.    +.   .
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~----m~---~   73 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEV----ME---R   73 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHH----CB---C
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCcccccCHHHH----cC---C
Confidence            57899999999999999999999999999999999999 8999999999999976432111011111111    00   0


Q ss_pred             HhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          191 SAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       191 ~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      ....+..    ..+..++.+.+....          ..        .++|+|+ |++    +|++|.+|+++.+..
T Consensus        74 ~~~~v~~----~~~l~~~~~~~~~~~----------~~--------~l~Vvd~-~~~----~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           74 DLVTISP----RATIKEAAEKMVKNV----------VW--------RLLVEED-DEI----IGVISATDILRAKMA  122 (125)
T ss_dssp             GGGEECT----TSCHHHHHHHHHHHT----------CS--------EEEEEET-TEE----EEEEEHHHHHHHHC-
T ss_pred             CCeEECC----CCCHHHHHHHHHhcC----------Cc--------EEEEEEC-CEE----EEEEEHHHHHHHHHh
Confidence            1111111    122333333331111          11        3789998 999    999999999998854

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.39  E-value=1.4e-12  Score=99.24  Aligned_cols=58  Identities=21%  Similarity=0.196  Sum_probs=54.0

Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ...+++++|+++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus         5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~   62 (138)
T 2yzi_A            5 MKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR   62 (138)
T ss_dssp             TTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             hhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence            3578999999999999999999999999999999999999988999999999999854

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.39  E-value=2.7e-13  Score=103.24  Aligned_cols=129  Identities=20%  Similarity=0.251  Sum_probs=85.3

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHH-HHHHHHHhCCCCCChHHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI-THAAVATVGNTAGSNNEAASTMMQK  187 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dl-l~~~~~~~~~~~~~~~~~~~~~~~~  187 (270)
                      ..+++++|++++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+ ++.+... .....+..+    .+. 
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-~~~~~~v~~----~m~-   80 (138)
T 2p9m_A            7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDK-YTLETTIGD----VMT-   80 (138)
T ss_dssp             TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTC-CCSSCBHHH----HSC-
T ss_pred             cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhc-ccCCcCHHH----HhC-
Confidence            468999999999999999999999999999999999999988999999999999 7642110 001111111    000 


Q ss_pred             HHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          188 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       188 ~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                        .....+.    ...+..++.+.+....+.             ......++|+|++|++    +|++|.+|+++.+..
T Consensus        81 --~~~~~v~----~~~~l~~~~~~~~~~~~~-------------~~~~~~l~Vvd~~g~~----~Giit~~dll~~~~~  136 (138)
T 2p9m_A           81 --KDVITIH----EDASILEAIKKMDISGKK-------------EEIINQLPVVDKNNKL----VGIISDGDIIRTISK  136 (138)
T ss_dssp             --SSCCCEE----TTSBHHHHHHHHTCC------------------CCCEEEEECTTSBE----EEEEEHHHHHHHHHH
T ss_pred             --CCcEEEC----CCCCHHHHHHHHHhcCCc-------------cccccEEEEECCCCeE----EEEEEHHHHHHHHHh
Confidence              0111111    113344444444221100             0001147899999999    999999999998754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.37  E-value=1.8e-12  Score=99.24  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=53.2

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC--cEEEEEeHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG--DVVDVVDVIHITHA  165 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g--~~~Givt~~dll~~  165 (270)
                      .+++++|++++.++++++++.+|++.|.+++.+.+||+|++|  +++|+||.+|+++.
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~   62 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRA   62 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHH
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHH
Confidence            589999999999999999999999999999999999999877  99999999999986

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.37  E-value=1.2e-12  Score=102.10  Aligned_cols=62  Identities=18%  Similarity=0.299  Sum_probs=56.3

Q ss_pred             CCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCE-EEEEeCCCcEEEEEeHHHHHHHH
Q 024256          104 NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLH-LPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       104 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~-lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      +......+++++|+++++++++++++.+|++.|.+++.+. +||+|++ +++|+||..||++..
T Consensus        10 ~~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~   72 (157)
T 1o50_A           10 HHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVS   72 (157)
T ss_dssp             CTTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHH
T ss_pred             hhhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHH
Confidence            3445568999999999999999999999999999999999 9999977 999999999999863

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.37  E-value=3e-14  Score=111.42  Aligned_cols=58  Identities=14%  Similarity=0.196  Sum_probs=53.3

Q ss_pred             CccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC-cEEEEEeHHHHHHH
Q 024256          108 DSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDG-DVVDVVDVIHITHA  165 (270)
Q Consensus       108 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g-~~~Givt~~dll~~  165 (270)
                      ...+++++|++  +++++++++++.+|++.|.+++++++||+|+++ +++|+||.+|++++
T Consensus        36 ~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   96 (156)
T 3oi8_A           36 SDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKY   96 (156)
T ss_dssp             TTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGG
T ss_pred             CCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            35789999997  789999999999999999999999999999774 99999999999975

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.37  E-value=9.1e-13  Score=100.87  Aligned_cols=131  Identities=15%  Similarity=0.281  Sum_probs=86.1

Q ss_pred             ccchhh---ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhC-CCCCChHHHHHHH
Q 024256          109 STLVEK---VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG-NTAGSNNEAASTM  184 (270)
Q Consensus       109 ~~~v~~---im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~-~~~~~~~~~~~~~  184 (270)
                      ..++++   +|.++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++....... ....++.+.....
T Consensus         7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   86 (144)
T 2nyc_A            7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRR   86 (144)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHC
T ss_pred             hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHHhcC
Confidence            457788   888899999999999999999999999999999988999999999999986432100 0111222211100


Q ss_pred             HHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256          185 MQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVT  264 (270)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i  264 (270)
                      .. .+..+..+..    ..+..++...+....          ..        .++|+|++|++    +|+||++|+++.+
T Consensus        87 ~~-~~~~~~~v~~----~~~l~~~~~~m~~~~----------~~--------~l~Vvd~~g~~----~Giit~~dil~~l  139 (144)
T 2nyc_A           87 SD-DFEGVYTCTK----NDKLSTIMDNIRKAR----------VH--------RFFVVDDVGRL----VGVLTLSDILKYI  139 (144)
T ss_dssp             C-------CEECT----TSBHHHHHHHHHHHT----------CS--------EEEEECTTSBE----EEEEEHHHHHHHH
T ss_pred             cc-ccCCCeEECC----CCcHHHHHHHHHHCC----------CC--------EEEEECCCCCE----EEEEEHHHHHHHH
Confidence            00 0001112211    133444444442111          11        37899999999    9999999999988


Q ss_pred             hh
Q 024256          265 NY  266 (270)
Q Consensus       265 ~~  266 (270)
                      ..
T Consensus       140 ~~  141 (144)
T 2nyc_A          140 LL  141 (144)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.36  E-value=4.3e-13  Score=104.90  Aligned_cols=57  Identities=14%  Similarity=0.249  Sum_probs=54.0

Q ss_pred             ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||..||+..
T Consensus        13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~   71 (159)
T 1yav_A           13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNS   71 (159)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             HhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHH
Confidence            4789999998  89999999999999999999999999999988999999999999986

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.36  E-value=7.2e-13  Score=102.31  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=53.2

Q ss_pred             ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|++  +++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||+..
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~   62 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL   62 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence            4689999998  89999999999999999999999999999988999999999999863

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.35  E-value=6e-13  Score=104.27  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=54.2

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC--CCcEEEEEeHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDVVDVIHITHAA  166 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~g~~~Givt~~dll~~~  166 (270)
                      ..+++++|+++++++++++++.+|++.|.+++.+.+||+|+  +|+++|+||..||++..
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~   71 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL   71 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHH
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHH
Confidence            57899999999999999999999999999999999999996  68999999999999864

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.35  E-value=2.1e-13  Score=103.31  Aligned_cols=124  Identities=13%  Similarity=0.154  Sum_probs=82.1

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCC-CCCChHHHHHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN-TAGSNNEAASTMMQKF  188 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~-~~~~~~~~~~~~~~~~  188 (270)
                      .+++++|.+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++..+..-.. ...++.+    .+.  
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~----~m~--   81 (133)
T 1y5h_A            8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGE----LAR--   81 (133)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHH----HHT--
T ss_pred             cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHH----Hhc--
Confidence            589999999999999999999999999999999999998889999999999998532111000 0111111    110  


Q ss_pred             HHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhhh
Q 024256          189 WDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       189 ~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~  267 (270)
                       .....+..    ..+..++.+.+...          ...        .++|+|+ |++    +|++|++|+++.+..+
T Consensus        82 -~~~~~v~~----~~~l~~~~~~m~~~----------~~~--------~l~Vvd~-g~~----~Giit~~dil~~l~~~  132 (133)
T 1y5h_A           82 -DSIYYVDA----NASIQEMLNVMEEH----------QVR--------RVPVISE-HRL----VGIVTEADIARHLPEH  132 (133)
T ss_dssp             -TCCCCEET----TCCHHHHHHHHHHH----------TCS--------EEEEEET-TEE----EEEEEHHHHHHTCC--
T ss_pred             -CCCEEECC----CCCHHHHHHHHHHc----------CCC--------EEEEEEC-CEE----EEEEEHHHHHHHHHhc
Confidence             01111110    12333444433211          111        3789998 999    9999999999988654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.34  E-value=4.2e-12  Score=99.34  Aligned_cols=56  Identities=25%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|++ ++++++++++.+|++.|.+++.+.+||+|++|+++|+||.+||++.
T Consensus        16 ~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~   71 (159)
T 3fv6_A           16 KLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRA   71 (159)
T ss_dssp             TCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             hCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence            4689999987 5599999999999999999999999999988999999999999986

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.34  E-value=4.2e-12  Score=98.80  Aligned_cols=57  Identities=14%  Similarity=0.251  Sum_probs=53.6

Q ss_pred             ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||..|+++.
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~   68 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDA   68 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHH
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHH
Confidence            4689999987  88999999999999999999999999999988999999999999975

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.34  E-value=1e-12  Score=110.22  Aligned_cols=59  Identities=19%  Similarity=0.256  Sum_probs=55.7

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      ..+++++|+++++++++++++.+|++.|.+++++++||+|++|+++|+||..|++++..
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~   64 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYM   64 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            46899999999999999999999999999999999999998899999999999998754

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.33  E-value=1.4e-12  Score=103.73  Aligned_cols=56  Identities=30%  Similarity=0.385  Sum_probs=52.6

Q ss_pred             cchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          110 TLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       110 ~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .+++++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+||++.
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~   61 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLAL   61 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhh
Confidence            578999998  89999999999999999999999999999988999999999999853

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.33  E-value=7.3e-12  Score=98.57  Aligned_cols=60  Identities=22%  Similarity=0.258  Sum_probs=55.0

Q ss_pred             CccchhhccCC---CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          108 DSTLVEKVMTP---NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       108 ~~~~v~~im~~---~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      ...+++++|++   +++++++++++.+|++.|.+++.+.+||+|++|+++|+||.+||++.+.
T Consensus        22 ~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~   84 (165)
T 3fhm_A           22 MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVA   84 (165)
T ss_dssp             SSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             hhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence            35789999985   6899999999999999999999999999998899999999999998743

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.31  E-value=5.9e-13  Score=103.06  Aligned_cols=57  Identities=12%  Similarity=0.160  Sum_probs=53.8

Q ss_pred             cchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          110 TLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       110 ~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      .+++++|++  +++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||++.+
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   86 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVF   86 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHH
Confidence            489999999  899999999999999999999999999999889999999999999863

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.30  E-value=4.2e-12  Score=109.13  Aligned_cols=124  Identities=14%  Similarity=0.255  Sum_probs=86.3

Q ss_pred             CCCccchhhccCCCCeeecCCCCHHHHHHHhHhC-----CCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHH
Q 024256          106 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDG-----KFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEA  180 (270)
Q Consensus       106 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~-----~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~  180 (270)
                      .....+++++|+++++++++++++.+|++.|.++     +++++||+|++|+++|+||.+|++..      ....++.+ 
T Consensus       133 ~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~------~~~~~v~~-  205 (286)
T 2oux_A          133 HYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------DDDTLIAD-  205 (286)
T ss_dssp             TSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS------CTTSBHHH-
T ss_pred             cCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC------CCCCcHHH-
Confidence            4456799999999999999999999999999987     78889999988999999999999863      11111111 


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHH
Q 024256          181 ASTMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNF  260 (270)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Di  260 (270)
                         .+.   ..+..+.    ...+..++.+.+..          +...        ..+|+|++|++    +|+||.+|+
T Consensus       206 ---im~---~~~~~v~----~~~~l~ea~~~m~~----------~~~~--------~lpVVd~~g~l----vGiIT~~Di  253 (286)
T 2oux_A          206 ---ILN---ERVISVH----VGDDQEDVAQTIRD----------YDFL--------AVPVTDYDDHL----LGIVTVDDI  253 (286)
T ss_dssp             ---HSB---SCCCCEE----TTSBHHHHHHHHHH----------HTCS--------EEEEECTTCBE----EEEEEHHHH
T ss_pred             ---HcC---CCCeeec----CCCCHHHHHHHHHH----------cCCc--------EEEEEcCCCeE----EEEEEHHHH
Confidence               000   0010110    01223333333311          1111        37899999999    999999999


Q ss_pred             HHhhhhhc
Q 024256          261 IEVTNYEY  268 (270)
Q Consensus       261 l~~i~~~~  268 (270)
                      ++.+..++
T Consensus       254 l~~i~~e~  261 (286)
T 2oux_A          254 IDVIDDEA  261 (286)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.28  E-value=1e-11  Score=99.56  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=53.8

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|+++++++++++++.+|+++|.+++.+.+||+|++|+++|+||.+||+..
T Consensus         8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~   64 (184)
T 1pvm_A            8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKR   64 (184)
T ss_dssp             CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence            368999999999999999999999999999999999999988999999999999985

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.27  E-value=1e-11  Score=106.28  Aligned_cols=120  Identities=18%  Similarity=0.286  Sum_probs=80.0

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhC-----CCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDG-----KFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAAST  183 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~-----~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~  183 (270)
                      ..+++++|+++++++++++++.+|++.|.++     ++.++||+|++|+++|+||.+|++..      ....++.+.   
T Consensus       134 ~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~------~~~~~v~~i---  204 (278)
T 2yvy_A          134 EDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------DPRTRVAEI---  204 (278)
T ss_dssp             TTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS------CTTCBSTTT---
T ss_pred             cchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC------CCCCcHHHH---
Confidence            4689999999999999999999999999986     78999999988999999999999863      100000000   


Q ss_pred             HHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHh
Q 024256          184 MMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEV  263 (270)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~  263 (270)
                       +.   ..+..+.    ...+..++.+.+..          +...        .++|+|++|++    +|+||.+|+++.
T Consensus       205 -m~---~~~~~v~----~~~~l~~a~~~m~~----------~~~~--------~lpVvd~~g~l----vGivT~~Dil~~  254 (278)
T 2yvy_A          205 -MN---PKVVYVR----TDTDQEEVARLMAD----------YDFT--------VLPVVDEEGRL----VGIVTVDDVLDV  254 (278)
T ss_dssp             -SB---SSCCCEE----TTSBHHHHHHHHHH----------HTCS--------EEEEECTTSBE----EEEEEHHHHHHH
T ss_pred             -hC---CCCeEEe----CCCCHHHHHHHHHh----------cCCC--------EEEEEeCCCeE----EEEEEHHHHHHH
Confidence             00   0000000    00122222222210          1111        47899999999    999999999999


Q ss_pred             hhhh
Q 024256          264 TNYE  267 (270)
Q Consensus       264 i~~~  267 (270)
                      +..+
T Consensus       255 i~~e  258 (278)
T 2yvy_A          255 LEAE  258 (278)
T ss_dssp             C---
T ss_pred             HHHH
Confidence            8654

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.26  E-value=1.8e-11  Score=92.77  Aligned_cols=54  Identities=15%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             chhhccC---CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          111 LVEKVMT---PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       111 ~v~~im~---~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++++|+   +++.++++++++.+|++.|.+++.+.+||+| +|+++|+||..|+++.
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~   63 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRK   63 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHH
Confidence            7999999   8899999999999999999999999999999 8999999999999964

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.26  E-value=3.7e-11  Score=101.06  Aligned_cols=61  Identities=16%  Similarity=0.273  Sum_probs=55.6

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC--CcEEEEEeHHHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAVAT  169 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--g~~~Givt~~dll~~~~~~  169 (270)
                      ..+++++|+++++++.+++++.+|.++|.+++++.+||||++  ++++|+||++||+.++...
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence            568999999999999999999999999999999999999964  6899999999999876544

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.24  E-value=3.3e-11  Score=96.19  Aligned_cols=59  Identities=20%  Similarity=0.222  Sum_probs=54.0

Q ss_pred             ccchhhccCCC----Ceee--cCCCCHHHHHHHhHhCCCCEEEEE--eCCCcEEEEEeHHHHHHHHH
Q 024256          109 STLVEKVMTPN----PECA--TIDTPIVDALHIMHDGKFLHLPVV--DRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       109 ~~~v~~im~~~----~~~v--~~~~~l~~a~~~~~~~~~~~lpVv--d~~g~~~Givt~~dll~~~~  167 (270)
                      ..+++++|++.    ++++  ++++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++...
T Consensus        10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~   76 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE   76 (185)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHH
Confidence            46899999986    7888  999999999999999999999999  77899999999999998744

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.21  E-value=5.6e-12  Score=103.65  Aligned_cols=119  Identities=22%  Similarity=0.211  Sum_probs=82.8

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKF  188 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  188 (270)
                      ...++++|.++++++++++++.+|+++|.+++.+.+||+|++|+++|+||.+|+.+..      ...+            
T Consensus        12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~------~~~~------------   73 (213)
T 1vr9_A           12 HMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD------LDSS------------   73 (213)
T ss_dssp             -CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC------TTSB------------
T ss_pred             ccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc------CCCc------------
Confidence            4578999999999999999999999999999999999999889999999999998641      0000            


Q ss_pred             HHHhhccCCCC-CCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhhh
Q 024256          189 WDSAMALSPND-DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       189 ~~~~~~~~~~~-~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~  267 (270)
                      ...++.-.... ....+..++.+.+....          ..        .++|+|++|++    +|++|.+|+++.+...
T Consensus        74 v~~im~~~~~~v~~~~~l~~a~~~m~~~~----------~~--------~lpVvd~~g~l----vGiit~~Dil~~~~~~  131 (213)
T 1vr9_A           74 VFNKVSLPDFFVHEEDNITHALLLFLEHQ----------EP--------YLPVVDEEMRL----KGAVSLHDFLEALIEA  131 (213)
T ss_dssp             SGGGCBCTTCCEETTSBHHHHHHHHHHCC----------CS--------EEEEECTTCBE----EEEEEHHHHHHHHHHS
T ss_pred             HHHHccCCCEEECCCCcHHHHHHHHHHhC----------CC--------EEEEEcCCCEE----EEEEEHHHHHHHHHHH
Confidence            11111100000 00122333333331111          11        37899999999    9999999999988653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.21  E-value=6.4e-12  Score=97.88  Aligned_cols=123  Identities=17%  Similarity=0.211  Sum_probs=80.9

Q ss_pred             cchhhccC------CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCC-CCCChHHHHH
Q 024256          110 TLVEKVMT------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN-TAGSNNEAAS  182 (270)
Q Consensus       110 ~~v~~im~------~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~-~~~~~~~~~~  182 (270)
                      .+++++|+      +++.++++++++.+|++.|.+++++.+||++ +|+++|+||..||++.+...... ...++.+.  
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~--   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEI--   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH--
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHH--
Confidence            47999998      4459999999999999999999999999965 89999999999999863321111 11111110  


Q ss_pred             HHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256          183 TMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE  262 (270)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~  262 (270)
                        +.   ..+..+.    ...+..++...+...          ...        .++|+| +|++    +|+||++||++
T Consensus        84 --m~---~~~~~v~----~~~~l~~~~~~m~~~----------~~~--------~lpVvd-~g~~----~Giit~~dil~  131 (157)
T 4fry_A           84 --MT---AKVRYVE----PSQSTDECMALMTEH----------RMR--------HLPVLD-GGKL----IGLISIGDLVK  131 (157)
T ss_dssp             --SB---SSCCCBC----TTSBHHHHHHHHHHH----------TCS--------EEEEEE-TTEE----EEEEEHHHHHH
T ss_pred             --cC---CCCcEEC----CCCcHHHHHHHHHHc----------CCC--------EEEEEE-CCEE----EEEEEHHHHHH
Confidence              00   0011111    012233333333111          111        378999 7999    99999999999


Q ss_pred             hhhhh
Q 024256          263 VTNYE  267 (270)
Q Consensus       263 ~i~~~  267 (270)
                      .+..+
T Consensus       132 ~l~~~  136 (157)
T 4fry_A          132 SVIAD  136 (157)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            98654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.20  E-value=1.1e-11  Score=115.41  Aligned_cols=124  Identities=16%  Similarity=0.188  Sum_probs=85.4

Q ss_pred             ccchhhccCCCCeeecCC-CCHHHHHHHhHhCCCCEEEEEe-CCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATID-TPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQ  186 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~-~~l~~a~~~~~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~  186 (270)
                      ..+++++|++++++++++ +++.+|+++|.+++++++||+| ++|+++|+||.+||++.+.........++.+.+.    
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~----  458 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALN----  458 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEE----
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhc----
Confidence            478999999999999999 9999999999999999999999 7899999999999998754321111111111000    


Q ss_pred             HHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecC----CCCeeEeecCCCChHHHHH
Q 024256          187 KFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDN----KGLMHRFTCGMLPFPNFIE  262 (270)
Q Consensus       187 ~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~----~g~l~~~~vGivs~~Dil~  262 (270)
                         ..+..+.    ...+..++.+.+                   .... ..+|+|+    +|++    +||||++||++
T Consensus       459 ---~~~~~v~----~~~~l~~a~~~m-------------------~~~~-~~pVVd~~~~~~g~l----vGIVT~~Dll~  507 (527)
T 3pc3_A          459 ---KRVIRLN----ESEILGKLARVL-------------------EVDP-SVLILGKNPAGKVEL----KALATKLDVTT  507 (527)
T ss_dssp             ---TTCCEEE----TTSBHHHHHHHH-------------------TTCS-EEEEEEECSSSCEEE----EEEEEHHHHHH
T ss_pred             ---CCCeEEC----CCCcHHHHHHHH-------------------hhCC-EEEEEeCCcccCCeE----EEEEEHHHHHH
Confidence               0000110    012233333333                   1111 2579998    4999    99999999999


Q ss_pred             hhhhh
Q 024256          263 VTNYE  267 (270)
Q Consensus       263 ~i~~~  267 (270)
                      .+...
T Consensus       508 ~l~~~  512 (527)
T 3pc3_A          508 FIAAG  512 (527)
T ss_dssp             HHHTC
T ss_pred             HHHhc
Confidence            98653

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.15  E-value=5.4e-11  Score=109.12  Aligned_cols=121  Identities=17%  Similarity=0.291  Sum_probs=82.6

Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhC-----CCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHH
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDG-----KFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAAS  182 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~-----~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~  182 (270)
                      ...+++++|+++++++++++++.++++.|.++     +++++||+|++++++|+||.+|++..      ....++.+.  
T Consensus       153 ~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~------~~~~~v~di--  224 (473)
T 2zy9_A          153 EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------DPRTRVAEI--  224 (473)
T ss_dssp             CTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS------CTTSBGGGT--
T ss_pred             CCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC------CCCCcHHHH--
Confidence            45789999999999999999999999999986     47899999988999999999999863      111111110  


Q ss_pred             HHHHHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHH
Q 024256          183 TMMQKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIE  262 (270)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~  262 (270)
                        +.   ..+..+.    ...+..++.+.+..          +...        ..+|+|++|++    +|+||.+|+++
T Consensus       225 --m~---~~~~~v~----~~~~l~ea~~~m~~----------~~~~--------~lpVVDe~g~l----vGiIT~~Dil~  273 (473)
T 2zy9_A          225 --MN---PKVVYVR----TDTDQEEVARLMAD----------YDFT--------VLPVVDEEGRL----VGIVTVDDVLD  273 (473)
T ss_dssp             --SB---SSCCCEE----SSSBHHHHHHHHHH----------HTCS--------EEEEECTTSBE----EEEEEHHHHHH
T ss_pred             --hC---CCCeEEe----CCCcHHHHHHHHHh----------cCCc--------EEEEEcCCCEE----EEEEehHhhHH
Confidence              00   0000000    01222233333311          1111        47899999999    99999999999


Q ss_pred             hhhhh
Q 024256          263 VTNYE  267 (270)
Q Consensus       263 ~i~~~  267 (270)
                      .+..+
T Consensus       274 ~i~~e  278 (473)
T 2zy9_A          274 VLEAE  278 (473)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.98  E-value=1.1e-10  Score=107.34  Aligned_cols=121  Identities=15%  Similarity=0.225  Sum_probs=72.9

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFW  189 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (270)
                      .++.++|+++++++++++++.+++++|.+++++.+||+|++++++|+||.+||...     .....++.+.+.+     .
T Consensus        89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~-----~~~~~~v~diM~p-----~  158 (496)
T 4fxs_A           89 KIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV-----TDLTKSVAAVMTP-----K  158 (496)
T ss_dssp             HHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC-----CCTTSBGGGTSEE-----G
T ss_pred             cccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc-----ccCCCcHHHHhcC-----C
Confidence            45678899999999999999999999999999999999988999999999999731     1111111110000     0


Q ss_pred             HHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          190 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       190 ~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      +.+..+.    ...+..++.+.+...          ...        ..+|+|++|++    +|+||++|+++...+
T Consensus       159 ~~~vtv~----~~~~l~ea~~~m~~~----------~i~--------~lpVVDe~G~l----~GiIT~~DIl~~~~~  209 (496)
T 4fxs_A          159 ERLATVK----EGATGAEVQEKMHKA----------RVE--------KILVVNDEFQL----KGMITAKDFHKAESK  209 (496)
T ss_dssp             GGCCEEE----CC----CGGGTCC-------------CC--------CEEEECTTSBC----CEEECCC-----CCC
T ss_pred             CCCEEEC----CCCCHHHHHHHHHHc----------CCC--------EEEEEcCCCCE----EEeehHhHHHHhhcc
Confidence            0011111    012233333333111          111        37899999999    999999999998754

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.97  E-value=5.6e-11  Score=112.75  Aligned_cols=57  Identities=16%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             ccchhhccC--CCCeeecCCCCHHHHHHHhH-hCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMT--PNPECATIDTPIVDALHIMH-DGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~--~~~~~v~~~~~l~~a~~~~~-~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..+++++|+  +++.++++++++.++.+.|. +++.+.+||+|++|+++|+||.+|+++.
T Consensus       452 ~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~  511 (632)
T 3org_A          452 EMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDR  511 (632)
T ss_dssp             TSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTT
T ss_pred             cCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHH
Confidence            578999999  78999999999999999999 7999999999988999999999999975

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.90  E-value=4.6e-10  Score=103.73  Aligned_cols=119  Identities=17%  Similarity=0.271  Sum_probs=80.2

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC--CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKF  188 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  188 (270)
                      ...+.|.++++++++++++.+++++|.+++++.+||+|+  +++++|+||.+|+...     .....++.+    .+.. 
T Consensus       114 ~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~-----~~~~~~V~~----vM~~-  183 (511)
T 3usb_A          114 RSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI-----QDYSIKISD----VMTK-  183 (511)
T ss_dssp             TSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC-----CCSSSBHHH----HCCC-
T ss_pred             ccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh-----ccCCCcHHH----hccc-
Confidence            345678888999999999999999999999999999998  8999999999999741     111111111    0100 


Q ss_pred             HHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          189 WDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       189 ~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                       ..+..+.    ...+..++.+.+.....          .        .++|+|++|++    +|++|++|+++.+.+
T Consensus       184 -~~~vtv~----~~~~l~eal~~m~~~~i----------~--------~lpVVDe~g~l----~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          184 -EQLITAP----VGTTLSEAEKILQKYKI----------E--------KLPLVDNNGVL----QGLITIKDIEKVIEF  234 (511)
T ss_dssp             -CCCCCEE----TTCCHHHHHHHHHHHTC----------S--------EEEEECTTSBE----EEEEEHHHHHHHHHC
T ss_pred             -CCCEEEC----CCCCHHHHHHHHHHcCC----------C--------EEEEEeCCCCE----eeeccHHHHHHhhhc
Confidence             0010000    01233333333321111          1        37899999999    999999999999865

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.88  E-value=2e-10  Score=105.96  Aligned_cols=121  Identities=16%  Similarity=0.259  Sum_probs=7.5

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWD  190 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (270)
                      .+.++|+++++++++++++.++++.|.+++++.+||+|++|+++|+||.+|+...     .....++.+    .+.. .+
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~-----~~~~~~v~~----im~~-~~  165 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE-----KNLSKKIKD----LMTP-RE  165 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh-----cCCCCcHHH----HhCC-CC
Confidence            4678899999999999999999999999999999999988999999999999863     111111111    1110 00


Q ss_pred             HhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhhh
Q 024256          191 SAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       191 ~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~  267 (270)
                      .+..+..    ..+..++.+.+....          .        ..++|+|++|++    +|++|++|+++.+...
T Consensus       166 ~~~~v~~----~~~l~ea~~~m~~~~----------~--------~~lpVVd~~g~l----vGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          166 KLIVAPP----DISLEKAKEILHQHR----------I--------EKLPLVSKDNKL----VGLITIKDIMSVIEHP  216 (494)
T ss_dssp             ---------------------------------------------------------------------CHHHHTCT
T ss_pred             CCeEECC----CCCHHHHHHHHHHcC----------C--------cEEEEEcCCCeE----EEEEEHHHHHhhhccc
Confidence            1111111    122333333331111          1        136799999999    9999999999998654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.85  E-value=2.6e-10  Score=104.85  Aligned_cols=120  Identities=19%  Similarity=0.274  Sum_probs=3.8

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFW  189 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (270)
                      ..++++|.++++++++++++.+++++|.+++++.+||+| +++++|+||.+||...     .....++.+...+   .  
T Consensus        88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~-----~~~~~~V~~vMtp---~--  156 (490)
T 4avf_A           88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVK-----PNAGDTVAAIMTP---K--  156 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhc-----cccCCcHHHHhcc---C--
Confidence            457788999999999999999999999999999999999 8999999999999642     1111111111110   0  


Q ss_pred             HHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          190 DSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       190 ~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      +.+..+.+    ..+..++.+.+.....                  -..+|+|++|++    +|+||++|+++...+
T Consensus       157 ~~~vtv~~----~~~l~ea~~~m~~~~i------------------~~lpVVDe~g~l----vGiIT~~Dil~~~~~  207 (490)
T 4avf_A          157 DKLVTARE----GTPLEEMKAKLYENRI------------------EKMLVVDENFYL----RGLVTFRDIEKAKTY  207 (490)
T ss_dssp             ----------------------------------------------------------------------------C
T ss_pred             CCCEEECC----CCcHHHHHHHHHHcCC------------------CEEEEEcCCCcE----EEEEehHHhhhhccC
Confidence            01111111    1233344444421111                  136799999999    999999999998754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.82  E-value=4.4e-10  Score=103.80  Aligned_cols=119  Identities=14%  Similarity=0.127  Sum_probs=1.3

Q ss_pred             hhc-cCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCC---CcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 024256          113 EKV-MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKF  188 (270)
Q Consensus       113 ~~i-m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  188 (270)
                      .++ |+++++++++++++.+++++|.+++++.+||+|++   |+++|+||.+|++..    ......++.+    .+...
T Consensus        99 ~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~----~~~~~~~V~d----iM~~~  170 (503)
T 1me8_A           99 FKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID----LTQTETKVSD----MMTPF  170 (503)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             cccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh----hccccCcHHH----HhCCC
Confidence            344 99999999999999999999999999999999976   899999999999863    0011111111    11100


Q ss_pred             HHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          189 WDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       189 ~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                       +.+..+.+    ..+..++.+.+.....                  -.++|+|++|++    +|+||++||++.+..
T Consensus       171 -~~~~tv~~----~~sl~ea~~~m~~~~i------------------~~lpVVDe~g~l----vGiIT~~Dil~~~~~  221 (503)
T 1me8_A          171 -SKLVTAHQ----DTKLSEANKIIWEKKL------------------NALPIIDDDQHL----RYIVFRKDYDRSQVC  221 (503)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             -CCCEEEcC----CCcHHHHHHHHHHcCC------------------CEEEEEcCCCeE----EEEEEecHHHHhhhc
Confidence             00111111    1233444444421111                  136799999999    999999999998854

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.82  E-value=1.2e-08  Score=94.07  Aligned_cols=54  Identities=15%  Similarity=0.249  Sum_probs=50.9

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEe--CCCcEEEEEeHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH  164 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd--~~g~~~Givt~~dll~  164 (270)
                      .+.++|+++++++++++++.++++.|.+++++.+||+|  ++++++|+||.+|++.
T Consensus        91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF  146 (491)
T ss_dssp             HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence            46789999999999999999999999999999999999  7899999999999985

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.81  E-value=1.3e-08  Score=68.20  Aligned_cols=45  Identities=13%  Similarity=0.123  Sum_probs=42.5

Q ss_pred             CeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          120 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       120 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++++++++++.+|+++|.+++++.+||+| +|+++|++|.+||++.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~   46 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDK   46 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHH
Confidence            57899999999999999999999999998 6899999999999976

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.59  E-value=5.1e-09  Score=95.23  Aligned_cols=114  Identities=14%  Similarity=0.268  Sum_probs=0.8

Q ss_pred             hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Q 024256          114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWD  190 (270)
Q Consensus       114 ~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (270)
                      ..|..+|+++.|+.++.+++++|.+++++.+||+++   +|+++||||.+|+-..      +....+.+    .+..   
T Consensus       142 ~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~------d~~~~V~e----vMT~---  208 (556)
T 4af0_A          142 NGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ------DAETPIKS----VMTT---  208 (556)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc------ccceEhhh----hccc---
Confidence            345678999999999999999999999999999985   5799999999997542      21222222    2211   


Q ss_pred             HhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          191 SAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       191 ~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      .++...    ...+..+..+++....-.                  .++|||++|+|    +|+||+.|+++.-.+
T Consensus       209 ~lvt~~----~~~~leeA~~iL~~~kie------------------klpVVd~~g~L----vGlIT~kDi~k~~~~  258 (556)
T 4af0_A          209 EVVTGS----SPITLEKANSLLRETKKG------------------KLPIVDSNGHL----VSLVARSDLLKNQNY  258 (556)
T ss_dssp             ---------------------------------------------------------------------------C
T ss_pred             ceEEec----CCCCHHHHHHHHHHcccc------------------ceeEEccCCcE----EEEEEechhhhhhhC
Confidence            121111    113444444444222211                  26799999999    999999999987653

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.58  E-value=1.2e-09  Score=101.20  Aligned_cols=67  Identities=15%  Similarity=0.202  Sum_probs=34.6

Q ss_pred             eHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHH
Q 024256           92 TSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITH  164 (270)
Q Consensus        92 t~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~  164 (270)
                      +..++. ..+..     -..+.++|.++++++++++++.+++++|.+++++.+||+|+   +|+++|+||.+|+..
T Consensus        96 t~e~~~-~~v~~-----v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~  165 (514)
T 1jcn_A           96 TPEFQA-NEVRK-----VKNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF  165 (514)
T ss_dssp             CHHHHH-HHHHH-----HHTCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-
T ss_pred             CHHHHH-HHHHh-----hhhhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHh
Confidence            666664 33321     23577899999999999999999999999999999999997   589999999999876

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.44  E-value=2.2e-08  Score=92.14  Aligned_cols=114  Identities=18%  Similarity=0.282  Sum_probs=1.9

Q ss_pred             hhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Q 024256          112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDS  191 (270)
Q Consensus       112 v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (270)
                      ..+.|..+++++++++++.++++.|.+++.+.+||+|+ ++++|+||.+|++.       .....+.+    .+..   .
T Consensus        95 ~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-------~~~~~v~~----im~~---~  159 (486)
T 2cu0_A           95 AERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-------REGKLVKE----LMTK---E  159 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc-------CCCCCHHH----HccC---C
Confidence            35578889999999999999999999999999999997 99999999999974       11111111    1110   1


Q ss_pred             hhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhh
Q 024256          192 AMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNY  266 (270)
Q Consensus       192 ~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~  266 (270)
                      ...+.+    ..+..+..+.+....          .        ...+|+|++|++    +|++|.+||++.+++
T Consensus       160 ~~~v~~----~~~l~eal~~m~~~~----------~--------~~lpVVde~g~l----vGiiT~~Dil~~~~~  208 (486)
T 2cu0_A          160 VITVPE----SIEVEEALKIMIENR----------I--------DRLPVVDERGKL----VGLITMSDLVARKKY  208 (486)
T ss_dssp             -------------------------------------------------------------------------CC
T ss_pred             CeEECC----cCcHHHHHHHHHHcC----------C--------CEEEEEecCCeE----EEEEEHHHHHHhhhc
Confidence            111111    122333333331111          1        136799999999    999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-15
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	3e-12
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	2e-11
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-10
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	0.002
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	5e-10
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	7e-08
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	6e-10
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-09
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	0.002
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	4e-09
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.001
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	6e-09
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	6e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	9e-09
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-08
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	0.003
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-08
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	2e-08
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	3e-08
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	3e-08
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	5e-08
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	1e-07
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	6e-04
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	2e-07
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	4e-07
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	6e-07
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-06
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	3e-06
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.002
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	5e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	0.004
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	2e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	0.002
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	0.003

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 69.4 bits (169), Expect = 2e-15
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
             VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V
Sbjct: 13  HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQV 72

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 168
           +++MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 73  KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 127

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.6 bits (146), Expect = 3e-12
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 49  IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPA 107
           I   + +  +  T  V +A    ++ R+S+  V  E  +   I +  D++     +    
Sbjct: 16  IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN 75

Query: 108 DSTL------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 161
                                  +   +   ++ + + +   L VVD    V  +V +  
Sbjct: 76  LDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSD 135

Query: 162 ITHAAVATVG 171
           I  A V T G
Sbjct: 136 ILQALVLTGG 145

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL--TSKDILMRVISQNLPADST 110
           +  V +SP D V    +           +T   +    L        +  + +       
Sbjct: 4   TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFL 63

Query: 111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                   +   A     + +A  I+   K   LP+V+ + ++V ++
Sbjct: 64  EEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAII 110

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
            K++ + P+ +V  A++ M+E  + S VV  ++       +K  ++R +          V
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 166
           E++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+
Sbjct: 73  ERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEAS 125

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
           ++  MT         T + +A  +M +     L V++ DG+VV       I   
Sbjct: 7   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR 60

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (130), Expect = 5e-10
 Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 48  IIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP 106
           II  +  + +   T  V+   + + + R+SS  ++        +  + D+L  +      
Sbjct: 13  IIT-QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 71

Query: 107 ------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 160
                  ++ +            T +  +   +  +   +     VVD  G +V V+ + 
Sbjct: 72  DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS 131

Query: 161 HITHAAV 167
            I    +
Sbjct: 132 DILKYIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (114), Expect = 7e-08
 Identities = 13/89 (14%), Positives = 36/89 (40%)

Query: 115 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA 174
           +   N +   + TP++D + ++  G+   +P++D +G +++V +   +       + N  
Sbjct: 14  ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL 73

Query: 175 GSNNEAASTMMQKFWDSAMALSPNDDEED 203
             +   A       ++     + ND    
Sbjct: 74  SLSVGEALMRRSDDFEGVYTCTKNDKLST 102

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 6e-10
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 48  IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNL 105
           +IP  SK+V    +  V  A   ++   + +A +         G+LT  D +  +     
Sbjct: 18  LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK 77

Query: 106 PADSTL--------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD- 150
            A   +                +       C + +  + DA+  +   K   LPV+D + 
Sbjct: 78  SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 137

Query: 151 GDVVDVV 157
           G+ + ++
Sbjct: 138 GNTLYIL 144

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADSTL 111
           S   T++   TV  A K M E  L   VV  +     G+L+ + I+ R I +N   D   
Sbjct: 11  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 70

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
           +  VM         D  + D    + +       VVD  G VV +V +  ++  
Sbjct: 71  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 17/82 (20%), Positives = 29/82 (35%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 171
           VEK+M  N +    +T + DA+ IM++     L V D +G+ V ++    I    +    
Sbjct: 5   VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 64

Query: 172 NTAGSNNEAASTMMQKFWDSAM 193
                              S  
Sbjct: 65  KPDEVPIRLVMRKPIPKVKSDY 86

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 51.4 bits (122), Expect = 4e-09
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 111
           K++V++++    +    K M E  + S +V   NKP GI+T +DI+  +      +  T 
Sbjct: 11  KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGK--SLETK 68

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
            E+ MT +      D+PI  AL +M      HLPVVD  G++  ++ +  IT A
Sbjct: 69  AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 147
           +  +V++ M       T D  + D   +M +     + VV
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVV 41

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.0 bits (121), Expect = 6e-09
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 111
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 69  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 113

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167
           T    +M     C      +  A   M +     LP+   D  +  ++    I    +
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGL 58

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 50.7 bits (120), Expect = 9e-09
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQNLPADSTL 111
              ++P   V  A + M   R+S   +       K  GI+T++D+           ++ +
Sbjct: 7   PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY-----NAPI 61

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHA 165
            E + + +   A + T +  A  I+H+ +   LP+VD  G +       D+  VI   HA
Sbjct: 62  SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHA 121

Query: 166 A 166
           A
Sbjct: 122 A 122

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+ +  I++        V
Sbjct: 8   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDV-LEAIAEGDDLAEVKV 66

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167
            +VM  +    +    I +A   M       L V + D +++ V+    I  A +
Sbjct: 67  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAKM 120

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 9/39 (23%), Positives = 13/39 (33%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 150
           VE VM  + +   I   + D L    +       VV   
Sbjct: 2   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEG 40

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 19/152 (12%), Positives = 50/152 (32%), Gaps = 20/152 (13%)

Query: 33  IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR--GI 90
           ++ ++  +   +   ++P   +++    T  V  +   +    + SA +      +  G+
Sbjct: 10  LKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGL 69

Query: 91  LTSKDILMRVISQNLPA------------------DSTLVEKVMTPNPECATIDTPIVDA 132
           LT  D +  +      +                  +       + P          ++DA
Sbjct: 70  LTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDA 129

Query: 133 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164
              M   +   +P++D DG+    + V  +T 
Sbjct: 130 CLAMSKSRARRIPLIDVDGETGSEMIVSVLTQ 161

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 19/121 (15%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLS------SAVVTVENKPRGILTSKDILMRVISQNLP 106
            + V +    TV    + +              VV  + + +G+L+ +D+++        
Sbjct: 9   PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD------ 62

Query: 107 ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVI 160
              T V ++M P       DT   +   +M D  F  LPVVD +G +V      DV+DV+
Sbjct: 63  -PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 121

Query: 161 H 161
            
Sbjct: 122 E 122

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 20/114 (17%), Positives = 45/114 (39%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 111
           K   V++  T T+     ++ + R+  AV+T  + P+  +        + +     D   
Sbjct: 8   KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG 67

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
               +  +P       P+  A   M      H+ VV+++G++V V+ +  +   
Sbjct: 68  PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---QNLPADS 109
           ++ V+I    TV  A   +      +  +        ++  ++ L+ VIS     +  D 
Sbjct: 9   TEFVSIVANQTVRSAMYVLKNQADMAETIYY----VYVVDQENHLVGVISLRDLIVNDDD 64

Query: 110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 161
           TL+  ++        +     D    + D  FL +PV D D  ++      D++DVI 
Sbjct: 65  TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 122

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.8 bits (115), Expect = 5e-08
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-GILTSKDILMRVISQNL------ 105
            K   +     +     ++LE  ++  V    +    G++    +L              
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 71

Query: 106 --------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V  +
Sbjct: 72  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 130

Query: 158 DVIHITHA 165
           + + I  A
Sbjct: 131 NSLEILLA 138

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 8/122 (6%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------KPRGILTSKDILMRVISQN 104
                +S  D +  A KK+ E  +   +V  E              + S           
Sbjct: 9   KNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDL 68

Query: 105 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164
               +T +   MTPNP      +    A++IM    F  LPVVD +   V +V       
Sbjct: 69  YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLL 128

Query: 165 AA 166
             
Sbjct: 129 LY 130

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 152
           +E +M  NP   + +  +  A   +++G    + V +   +
Sbjct: 3   IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIE 43

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENK-PRGILTSKDILMRVISQ-------N 104
               T+  T T+  A   M  L +    +   NK   GI++ +D+L    S        +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 105 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 164
             A  T + +VM  +         + ++   M   K   LPVV     +V ++       
Sbjct: 70  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVT 128

Query: 165 AAV 167
            A+
Sbjct: 129 IAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 18/78 (23%), Positives = 37/78 (47%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 171
           VE +MT +P        + DA H+M      H+P+VD +  ++ +V    +  A  +++ 
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 63

Query: 172 NTAGSNNEAASTMMQKFW 189
            +A  ++ A  T + +  
Sbjct: 64  RSAQGDSLAFETPLFEVM 81

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.5 bits (109), Expect = 4e-07
 Identities = 15/94 (15%), Positives = 32/94 (34%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 171
           +E             TP+  AL  +     + LPVVD +G++V +VD   +   +     
Sbjct: 6   IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRI 65

Query: 172 NTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNR 205
             +     ++           +     + +  N+
Sbjct: 66  MKSTELAASSEEEWILESHPTLLFEKFELQLPNK 99

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 30/146 (20%)

Query: 52  KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 110
           +  V  +     +  A K +L     +  V        GI+   D+L       +   + 
Sbjct: 11  QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE 70

Query: 111 L-----------------------------VEKVMTPNPECATIDTPIVDALHIMHDGKF 141
           L                             V ++MT +   AT    + +    M     
Sbjct: 71  LAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSI 130

Query: 142 LHLPVVDRDGDVVDVVDVIHITHAAV 167
             LPV+  +GD++ ++    +    V
Sbjct: 131 EQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 49  IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQN--- 104
           I   S + T S    V    K + E  +S+  +         +  S D++  +   +   
Sbjct: 8   IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN 67

Query: 105 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 161
                 ++ L                 +      +   +   L VVD +  +  ++ +  
Sbjct: 68  LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD 127

Query: 162 ITHAAV 167
           I +  +
Sbjct: 128 ILNYII 133

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 112
              VTI+   T   A +   + ++ S  V  +      + S   ++    +   A     
Sbjct: 9   QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAM---- 64

Query: 113 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 157
             ++  +      +  +  A  +M +  +  + VVD  G  V ++
Sbjct: 65  --LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL 107

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
           V+ +MT NP   T+      AL +    K    PVV+++G +V ++ V  I   
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN 56

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 53  SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPAD---- 108
           +KV TI     +  A K ML        V  ++     + +    ++ +++ +       
Sbjct: 10  TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDY 69

Query: 109 --STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
               +V+ VM  N         +  A   M   +   L ++++D  +  ++    +  A
Sbjct: 70  FYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA 128

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 151
           V+  M+   +    +  +  A+ +M    F  LPV+D D 
Sbjct: 4   VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDN 43

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 8/89 (8%), Positives = 19/89 (21%)

Query: 9   KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 68
             +   +    +     +          +                    +    ++    
Sbjct: 67  GLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTH 126

Query: 69  KKMLELRLSSAVVTVENKPRGILTSKDIL 97
                L L  A VT   K  G++   +I 
Sbjct: 127 TLFSLLGLDRAYVTSMGKLVGVVALAEIQ 155

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 54  KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 113
               +  + TV     +M + + +  +V         + +K+ L+ +   +         
Sbjct: 10  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSV------F 63

Query: 114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 167
             ++        +  I  AL +  + +  +LPVVD +  +   V +     A +
Sbjct: 64  NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 165
           V+K +T +         + + LH M   +     V DR+G    VV+   +   
Sbjct: 3   VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL 56

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 27/129 (20%)

Query: 55  VVTISPTDTVLMATKKMLELRLSSAVVTVEN---KPRGILTSKDILMRVISQNLPAD--- 108
            V    + TV      + E   S   V V     +  G +  +D+++ + +     D   
Sbjct: 19  TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV 78

Query: 109 --------------------STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD 148
                               +  +  ++  +P   T  TP+   + I          V  
Sbjct: 79  STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH 138

Query: 149 RDGDVVDVV 157
            +G ++ ++
Sbjct: 139 -NGRLLGII 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.9
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.9
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.9
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.9
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.89
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.89
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.88
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.88
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.87
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.87
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.86
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.86
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.85
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.83
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.83
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.83
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.82
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.82
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.82
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.82
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.81
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.81
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.81
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.8
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.79
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.78
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.6
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.57
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.56
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.56
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.53
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.53
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.51
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.51
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.5
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.5
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.5
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.49
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.49
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.49
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.48
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.48
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.47
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.44
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.42
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.4
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.32
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.32
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.32
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.31
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.25
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.24
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	84.75

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.90  E-value=2e-23  Score=156.90  Aligned_cols=123  Identities=28%  Similarity=0.416  Sum_probs=113.3

Q ss_pred             CCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           41 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        41 ~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      ....|+++|+  ++++++++++|+.+|+++|.+++++++||+++|+++|+++.+|++ +.+.++... ..++.++|.+++
T Consensus         2 ~~~~V~d~m~--~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~~~~~~   77 (127)
T d2ef7a1           2 EEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSL-ETKAEEFMTASL   77 (127)
T ss_dssp             CCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCCT-TCBGGGTSEECC
T ss_pred             CccCHHHhCC--CCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHH-HHHHhhccc-cchhhhhhhhhc
Confidence            4568999999  789999999999999999999999999999999999999999998 666665554 478999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      +++++++++.++++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus        78 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          78 ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999754

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=5.9e-24  Score=158.97  Aligned_cols=120  Identities=17%  Similarity=0.332  Sum_probs=110.6

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCe
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  121 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~  121 (270)
                      ++++|+|+  ++++++.+++|+.+|++.|.+++++++||++ +|+++|++|.+|++++.+.++.......++++|+++++
T Consensus         1 tt~~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   78 (123)
T d1y5ha3           1 TTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   78 (123)
T ss_dssp             CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             CCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccce
Confidence            46899999  6899999999999999999999999999998 88999999999998566667666666789999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++++++++.+|++.|.+++++++||+| +|+++|+||..||+++
T Consensus        79 ~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          79 YVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             eeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence            999999999999999999999999999 6899999999999985

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.90  E-value=1.6e-23  Score=157.49  Aligned_cols=123  Identities=26%  Similarity=0.443  Sum_probs=110.8

Q ss_pred             CCccccccC-CCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCe
Q 024256           43 PSLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  121 (270)
Q Consensus        43 ~~v~~im~~-~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~  121 (270)
                      ++|+++|.. .++++++++++|+.+|+++|.+++++++||+++++++|++|.+|++++....+......+++++|++++.
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   81 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA   81 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCC
T ss_pred             ccHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeeccceeE
Confidence            368888874 2479999999999999999999999999999999999999999998555555555556799999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++++++++.+|+++|.+++++++||+| +|+++|+||.+||++++
T Consensus        82 ~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          82 YVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             CBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             EeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            999999999999999999999999998 69999999999999974

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=3.1e-23  Score=154.35  Aligned_cols=118  Identities=23%  Similarity=0.250  Sum_probs=109.9

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeee
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  123 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v  123 (270)
                      +|+++|+  ++++++++++|+.+|++.|.+++++++||.++|+++|++|.+|++ +.+..+....+.+++++|++++.++
T Consensus         1 kV~diM~--~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~-~~l~~~~~~~~~~v~~~m~~~~~~v   77 (120)
T d1pbja3           1 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTI   77 (120)
T ss_dssp             CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             ChHHhCC--CCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecc-ccccccccccceeEeeecccccccc
Confidence            5789999  789999999999999999999999999999999999999999998 6666666666789999999999999


Q ss_pred             cCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          124 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       124 ~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++++++.+|++.|.+++.+++||++ +|+++|++|.+|++++
T Consensus        78 ~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          78 SPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             cchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence            9999999999999999999999987 7899999999999987

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=3.3e-23  Score=158.73  Aligned_cols=121  Identities=25%  Similarity=0.293  Sum_probs=112.2

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCe
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  121 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~  121 (270)
                      .+|+++|+  ++++++++++|+.+|++.|.+++++++||++ +|+++|++|.+|+++++...+......+++++|+++++
T Consensus         3 m~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~   80 (142)
T d1pvma4           3 MRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIP   80 (142)
T ss_dssp             CBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCC
T ss_pred             EEHHHhCC--CCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcccccccccccccccccc
Confidence            47999999  7899999999999999999999999999999 79999999999998555666666666789999999999


Q ss_pred             eecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          122 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       122 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++++++++.+|++.|.+++.+++||+|++|+++|+||..||+++
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~  124 (142)
T d1pvma4          81 KVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY  124 (142)
T ss_dssp             EEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             cccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHH
Confidence            99999999999999999999999999999999999999999986

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=1.3e-22  Score=153.54  Aligned_cols=123  Identities=23%  Similarity=0.395  Sum_probs=110.2

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      +.+|+++|+  ++++++++++|+.+|++.|.+++++++||++ +|+++|++|..|++ +.+..+......+++++|.+++
T Consensus         4 ~~pV~~im~--~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~-~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           4 KAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDII-RRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             TSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CCcHHHHcC--CCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHH-HHHhhccCccceeEeecccccc
Confidence            457999999  7899999999999999999999999999999 88999999999998 4444333334679999999999


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      .++++++++.++++.|.+++++++||++ +|+++|+||.+|++++...
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999876 7999999999999997543

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=1.6e-22  Score=152.91  Aligned_cols=123  Identities=14%  Similarity=0.146  Sum_probs=108.9

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-----CCccchhhcc
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-----ADSTLVEKVM  116 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~-----~~~~~v~~im  116 (270)
                      .+|+++|.|.++++++.+++|+.+|++.|.+++++++||+| +|+++|+++.+|++ +.+.....     ....+++++|
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~-~~~~~~~~~~~~~~~~~~v~~~m   80 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM-NSIFGLERIEFEKLDQITVEEVM   80 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHH-HHHBCSSSBCGGGTTTSBHHHHS
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhH-HHhhccccccccccccccccccc
Confidence            57899999888999999999999999999999999999998 89999999999998 66543211     1246899999


Q ss_pred             CCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          117 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       117 ~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      .+++.++++++++.+++.+|.+++  .+||+|++|+++|+||.+|+++++.+
T Consensus        81 ~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          81 LTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             BCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            999999999999999999998764  69999999999999999999998543

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.88  E-value=2.2e-22  Score=153.51  Aligned_cols=123  Identities=20%  Similarity=0.205  Sum_probs=109.1

Q ss_pred             CCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC--------CCCccchh
Q 024256           43 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL--------PADSTLVE  113 (270)
Q Consensus        43 ~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~--------~~~~~~v~  113 (270)
                      .+++|+|+  ++++++++++|+.+|++.|.+++++++||+| +|+++|++|.+|++ +......        .....+++
T Consensus         2 i~v~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~-~~~~~~~~~~~~~~~~~~~~~v~   78 (139)
T d2o16a3           2 IKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL-AAQESSLQRSAQGDSLAFETPLF   78 (139)
T ss_dssp             CBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHHHHHCC---------CCCBHH
T ss_pred             EEHHHhCc--CCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHH-HHHHhhhhhhhcccccccccchh
Confidence            36899999  6899999999999999999999999999999 89999999999998 5553321        12246899


Q ss_pred             hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHH
Q 024256          114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  169 (270)
Q Consensus       114 ~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~  169 (270)
                      ++|++++.++++++++.+|+++|.+++.+++||+| +|+++|+||.+||++++...
T Consensus        79 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~  133 (139)
T d2o16a3          79 EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINL  133 (139)
T ss_dssp             HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHH
T ss_pred             HhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 58999999999999986554

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.87  E-value=1.2e-21  Score=147.15  Aligned_cols=114  Identities=22%  Similarity=0.342  Sum_probs=103.9

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHC-----CCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccC
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  117 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~-----~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~  117 (270)
                      +++.+|+  ++++++++++|+.+|++.|+++     +++.+||++ +++++|+++.++++       ......+++++|+
T Consensus         2 taG~iM~--~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~-------~~~~~~~v~~im~   72 (127)
T d2ouxa2           2 TAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI-------VNDDDTLIADILN   72 (127)
T ss_dssp             BHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT-------TSCTTSBHHHHSB
T ss_pred             ChhHhCC--CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccc-------cccccEEhhhhcc
Confidence            5788999  7999999999999999999887     478999999 89999999999985       1223578999999


Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++++++++++++.+|++.|.+++++++||+|++|+++|+||..||++.+
T Consensus        73 ~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          73 ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999863

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.7e-21  Score=144.94  Aligned_cols=116  Identities=18%  Similarity=0.224  Sum_probs=107.3

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCee
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  122 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~  122 (270)
                      +++++|+  ++++++++++|+.+|++.|.+++.+++||++ +|+++|+++.+|++ +     .. ...++.++|+.++++
T Consensus         2 ~v~~~m~--~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~-~-----~~-~~~~v~~~~~~~~~~   72 (121)
T d1vr9a3           2 KVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL-D-----LD-LDSSVFNKVSLPDFF   72 (121)
T ss_dssp             BGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT-T-----SC-TTSBSGGGCBCTTCC
T ss_pred             Cchhhhc--CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhh-h-----hh-ccccccccccCccEE
Confidence            6889999  7999999999999999999999999999998 89999999999996 2     22 246899999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          123 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       123 v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      +++++++.++++.|.+++...+||+|++|+++|+||..|+++++..
T Consensus        73 v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          73 VHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             EETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998554

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=2.4e-22  Score=149.89  Aligned_cols=114  Identities=23%  Similarity=0.258  Sum_probs=88.0

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCee
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  122 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~  122 (270)
                      +|+++|+  ++++++++++|+.+|++.|.+++++++||++ +|+++|+|+.+|++ +.      ....++.++|.+++++
T Consensus         2 ~v~diM~--~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~-~~------~~~~~~~~~~~~~~~~   72 (122)
T d2yzqa2           2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-VN------PDEEQLAMLVKRDVPV   72 (122)
T ss_dssp             BHHHHSE--ESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCE
T ss_pred             CcccccC--CCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhh-hh------hcccchhhccccceee
Confidence            6889999  6899999999999999999999999999999 89999999999997 32      2246899999999999


Q ss_pred             ecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          123 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       123 v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      +++++++.+++++|.+++++++||+|++|+++|+||.+||++++
T Consensus        73 v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          73 VKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999999999873

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.86  E-value=8e-22  Score=150.50  Aligned_cols=122  Identities=19%  Similarity=0.169  Sum_probs=109.0

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC------CCCccchhhcc
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL------PADSTLVEKVM  116 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~------~~~~~~v~~im  116 (270)
                      +|+++|+  ++++++++++|+.+|++.|.+++++++||++ +++++|+++..|++ +.+....      .....+++++|
T Consensus         3 ~V~~iMt--~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~-~~~~~~~~~~~~~~~~~~~v~~im   79 (141)
T d3ddja1           3 PVKVFMS--TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAI-KQLAKAVDKLDPDYFYGKVVKDVM   79 (141)
T ss_dssp             BHHHHSB--CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HHHHHHHHHTCTHHHHTCBHHHHS
T ss_pred             eeHHhCc--CCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccch-hhhhccccccccccccCCCHHHHh
Confidence            6899999  6899999999999999999999999999999 88999999999997 5443211      11246899999


Q ss_pred             CCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          117 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       117 ~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      +++++++++++++.++++.|.+++.+++||+|++|+++|+||.+||++++..
T Consensus        80 ~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          80 VTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998544

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2.6e-21  Score=148.36  Aligned_cols=113  Identities=22%  Similarity=0.320  Sum_probs=103.4

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCC-----CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccC
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  117 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~-----~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~  117 (270)
                      +++.+|+  ++++++++++|+.+|++.|++++     ++.+||++ +|+++|+++.+|+. +     . ....++.++|+
T Consensus         2 taG~iM~--~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~-~-----~-~~~~~v~~im~   72 (144)
T d2yvxa2           2 EAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-V-----A-DPRTRVAEIMN   72 (144)
T ss_dssp             SSGGGCB--SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHT-T-----S-CTTCBSTTTSB
T ss_pred             CcccccC--CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhh-h-----c-ccccchHHhcc
Confidence            5789999  78999999999999999998764     67899999 89999999999996 2     2 23578999999


Q ss_pred             CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          118 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       118 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++++++++++++.+|++.|.+++++++||||++|+++|+||.+||+++
T Consensus        73 ~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~  120 (144)
T d2yvxa2          73 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV  120 (144)
T ss_dssp             SSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHH
T ss_pred             cCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHH
Confidence            999999999999999999999999999999999999999999999986

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.83  E-value=3.5e-20  Score=138.74  Aligned_cols=108  Identities=21%  Similarity=0.355  Sum_probs=94.4

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCCeeecCCCCH
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPI  129 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l  129 (270)
                      ++++++++++|+.+|+++|.+++++++||+|   +++++|++|.+|+. +...    ........+|.++++++++++++
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~-~~~~----~~~~~~~~~~~~~~~~~~~~~~l   79 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR-FISD----YNAPISEHMTSEHLVTAAVGTDL   79 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHH-HCSC----SSSBTTTSCCCSCCCCEETTCCH
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHH-Hhhc----cCCceeeeeeccceeecCCCCCH
Confidence            4688999999999999999999999999998   57899999999996 3321    22233445566788999999999


Q ss_pred             HHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          130 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       130 ~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .+|+++|.+++++++||+|++|+++|+||.+||+++
T Consensus        80 ~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~  115 (126)
T d1zfja4          80 ETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKV  115 (126)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence            999999999999999999999999999999999997

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=5.9e-21  Score=148.07  Aligned_cols=121  Identities=19%  Similarity=0.206  Sum_probs=106.0

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-----------------
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-----------------  103 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~-----------------  103 (270)
                      ..++.++|.  ++++++++++++.+|++.|.+++++++||++ +|+++|++|..|++ +....                 
T Consensus         3 ~~~v~~~m~--r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~-~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T d2yzqa1           3 GVEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL-RDSEIVRIMKSTELAASSEEEW   79 (156)
T ss_dssp             GCBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG-GCGGGCC---------------
T ss_pred             CCCHHHHhc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeech-hhhcccccccccccccchhhhh
Confidence            347899999  7899999999999999999999999999998 89999999999986 22111                 


Q ss_pred             -------------CCCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          104 -------------NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       104 -------------~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                                   .......++.++|++++.++++++++.++++.|.+++++++||+|++|+++|+||.+||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          80 ILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             -----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                         01122458999999999999999999999999999999999999999999999999999975

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=2.9e-20  Score=140.03  Aligned_cols=117  Identities=21%  Similarity=0.346  Sum_probs=103.7

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccCCCC
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  120 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~  120 (270)
                      +|+++|+  ++++++++++|+.+|++.|.+++++++||++   +++++|+++..|+. +.+..+...  ......|.+++
T Consensus         2 ~V~dim~--~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~-~~~~~~~~~--~~~~~~~~~~~   76 (131)
T d2riha1           2 RTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDL--DGPAMPIANSP   76 (131)
T ss_dssp             BGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHH-HHHHTTCCT--TSBSGGGCBCC
T ss_pred             CHHHhcc--CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccc-ccccccccc--ccccccccccc
Confidence            6899999  7899999999999999999999999999994   58899999999998 666655443  23445556788


Q ss_pred             eeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          121 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       121 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.+++++.+|+++|.+++++++||+|++|+++|+||..||+++
T Consensus        77 ~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          77 ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             eeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence            899999999999999999999999999999999999999999986

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=1.2e-20  Score=142.74  Aligned_cols=118  Identities=27%  Similarity=0.328  Sum_probs=104.8

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC----------CCccchh
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVE  113 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~  113 (270)
                      +|+++|.  ++++++++++|+.+|++.|.+++++++||+++ +++|+++..+++ +.+.....          ....+++
T Consensus         2 ~V~~lM~--~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~   77 (135)
T d3ddja2           2 NIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLL-STVESYCKDSCSQGDLYHISTTPII   77 (135)
T ss_dssp             SGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHH-GGGTTCC---CCHHHHHHHHTSBGG
T ss_pred             EeeEEee--CCCeEECCCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchh-hhhccccccchhhhhccccccCCHH
Confidence            6899999  68999999999999999999999999999964 699999999997 54432211          1246899


Q ss_pred             hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       114 ~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++|+++++++++++++.+|+++|.+++++++||+|++|+++|+||.+|++++
T Consensus        78 ~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~  129 (135)
T d3ddja2          78 DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL  129 (135)
T ss_dssp             GTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGG
T ss_pred             HHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.82  E-value=8.6e-20  Score=141.14  Aligned_cols=123  Identities=15%  Similarity=0.169  Sum_probs=104.2

Q ss_pred             CccccccC-CCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-CCCCccchhhccC---
Q 024256           44 SLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMT---  117 (270)
Q Consensus        44 ~v~~im~~-~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~-~~~~~~~v~~im~---  117 (270)
                      ++++++.+ .++++++.+++|+.+|+++|.+++++++||++ +|+++|+++..|++ +.+... ......++.++|+   
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~-~~~~~~~~~~~~~~v~~~~~~~~   80 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVM-HLIQDGDYSNLDLSVGEALLKRP   80 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHH-HHHGGGCGGGGGSBHHHHHHTSC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeee-ehhccccccccccchhhheeeee
Confidence            45666653 35899999999999999999999999999999 88999999999998 555432 2233456766663   


Q ss_pred             ---CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          118 ---PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       118 ---~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                         .+++++++++++.++++.|.+++++++||+|++|+++|+||.+|+++++.
T Consensus        81 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          81 ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  133 (153)
T ss_dssp             CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence               46678999999999999999999999999999999999999999999754

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=3.4e-20  Score=144.20  Aligned_cols=129  Identities=18%  Similarity=0.193  Sum_probs=108.9

Q ss_pred             hhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCC-----CC----
Q 024256           39 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNL-----PA----  107 (270)
Q Consensus        39 ~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~~~-----~~----  107 (270)
                      ++...+++|+|.+..+++++++++|+.+|++.|.+++++++||++  +++++|+++..|++ +.+....     ..    
T Consensus         9 ~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~-~~~~~~~~~~~~~~~~~~   87 (159)
T d2v8qe2           9 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI-NILHRYYKSALVQIYELE   87 (159)
T ss_dssp             HHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHH-HHHHHHHHHHTTTCCCGG
T ss_pred             HhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHH-HHHHhccccccchhhhhh
Confidence            345668999998767899999999999999999999999999997  68999999999998 4442210     00    


Q ss_pred             ------CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEe-CCCcEEEEEeHHHHHHHHHH
Q 024256          108 ------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       108 ------~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~~  168 (270)
                            ......++|.++++++++++++.+++++|.+++.+++||+| ++|+++|+||.+||++++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          88 EHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             GCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             hhhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence                  01244678888999999999999999999999999999998 46899999999999998544

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=2.6e-19  Score=136.97  Aligned_cols=121  Identities=22%  Similarity=0.370  Sum_probs=103.9

Q ss_pred             CccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC---------------CCC
Q 024256           44 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---------------LPA  107 (270)
Q Consensus        44 ~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~---------------~~~  107 (270)
                      .+.++|+  ++++++.+++|+.+|++.|.+++++++||+| +|+++|++|..|++ ++....               ...
T Consensus         5 ~v~~~m~--~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~   81 (145)
T d1o50a3           5 DVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL-KVSGFHFFGFIPKEELIRSSMKRL   81 (145)
T ss_dssp             HHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHH-HHHHHHHHCCCC-------CCCCC
T ss_pred             EhHHhCC--CCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhh-hhhhcccccccchhHHHHhhhhhc
Confidence            4677888  7899999999999999999999999999999 89999999999998 443210               112


Q ss_pred             CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          108 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       108 ~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      ...+++++|. +++++++++++.+|++.|.+++++++||+|++|+++|+||.+||++++..
T Consensus        82 ~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          82 IAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             SSCBHHHHCB-CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             cccCHHHHcC-CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            2356777774 56789999999999999999999999999999999999999999998554

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.6e-19  Score=137.55  Aligned_cols=125  Identities=15%  Similarity=0.145  Sum_probs=98.9

Q ss_pred             CCCcccc-ccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCC-Cccchh-----
Q 024256           42 RPSLSTI-IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-DSTLVE-----  113 (270)
Q Consensus        42 ~~~v~~i-m~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~-~~~~v~-----  113 (270)
                      +++++++ +...++++++.+++|+.+|++.|.+++++++||++ +|+++|++|..|++ +++...... ....+.     
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~-~~~~~~~~~~~~~~~~~~~~~   83 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL-GLIKGGIYNDLSLSVGEALMR   83 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHHHTC----CCSBHHHHHHH
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHH-HHHhhccccccccchhhhhhh
Confidence            5567665 22237899999999999999999999999999999 88999999999998 665543222 122222     


Q ss_pred             -hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          114 -KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       114 -~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                       ..+..+++++++++++.++++.|.+++++++||+|++|+++|+||.+|++++++
T Consensus        84 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          84 RSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             CC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence             334457789999999999999999999999999999999999999999999853

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.81  E-value=1.6e-19  Score=140.10  Aligned_cols=121  Identities=14%  Similarity=0.085  Sum_probs=104.9

Q ss_pred             CCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcC--------------
Q 024256           42 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN--------------  104 (270)
Q Consensus        42 ~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~~~~--------------  104 (270)
                      ..+|+|+|+  ++++++++++|+.+|+++|.+++++++||++   ++.++|+++..|++ +++...              
T Consensus        10 ~~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~-~~l~~~~~~~~~~~~~~~~~   86 (160)
T d2d4za3          10 NIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVE-GLLQRRISAYRRQPFEEMLT   86 (160)
T ss_dssp             SCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHH-HHHHHHHHTTSSSCCCSCCB
T ss_pred             ceEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHH-HHHhhccccccccchhhccc
Confidence            558999999  7999999999999999999999999999998   36899999999997 544321              


Q ss_pred             -----------CCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          105 -----------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       105 -----------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                                 .......+.++|.++++++++++++.+++++|.+++++++||++ +|+++|+||++||++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          87 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             cchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence                       01112346678999999999999999999999999999999998 69999999999999863

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3e-19  Score=140.28  Aligned_cols=128  Identities=13%  Similarity=0.158  Sum_probs=106.0

Q ss_pred             CCCccccccCCCce----eEECCCCCHHHHHHHHHHCCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcC----------
Q 024256           42 RPSLSTIIPEKSKV----VTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN----------  104 (270)
Q Consensus        42 ~~~v~~im~~~~~~----~~v~~~~tv~~a~~~m~~~~~~~i~Vv~---~~~~~Givt~~dl~~~~~~~~----------  104 (270)
                      +..++|+|.|....    +.+.+++|+.+|.++|.+++++++||++   +++++|++|.+|++ +++...          
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~-~~l~~~~~~~~~~~~~   80 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLI-ISIENARKKQDGVVST   80 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHH-HHHHHHHTSCSCCCTT
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHH-HHHhcccccccccccc
Confidence            45678999874322    4467889999999999999999999994   67899999999998 555310          


Q ss_pred             --------------CCCCccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          105 --------------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       105 --------------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                                    ......+++++|+++++++.+++++.+++++|.+++.+++||+| +|+++|+||++||++++....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~~  159 (169)
T d2j9la1          81 SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMA  159 (169)
T ss_dssp             CEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHC
T ss_pred             hhhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHh
Confidence                          11124568999999999999999999999999999999999987 789999999999999866554


Q ss_pred             C
Q 024256          171 G  171 (270)
Q Consensus       171 ~  171 (270)
                      .
T Consensus       160 ~  160 (169)
T d2j9la1         160 N  160 (169)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.80  E-value=8e-20  Score=144.80  Aligned_cols=139  Identities=18%  Similarity=0.220  Sum_probs=116.1

Q ss_pred             hHHHHHHHHhhCCCCccccccCCCceeEECCCCCHHHHHHHHHHCCCcEEEEEe--CCEEEEEeeHHHHHHHHHhc----
Q 024256           30 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQ----  103 (270)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~--~~~~~Givt~~dl~~~~~~~----  103 (270)
                      ...++++.+++...++.|+|.+..+++++++++|+.+|+..|.+++++++||++  +++++|++|..|++ +.+..    
T Consensus         7 ~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~-~~l~~~~~~   85 (179)
T d2ooxe1           7 KGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFV-NVIKYYYQS   85 (179)
T ss_dssp             HHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHH-HHHHhcccc
Confidence            355778888888889999998767899999999999999999999999999998  47999999999998 44321    


Q ss_pred             -CCCC--------------CccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCC-----cEEEEEeHHHHH
Q 024256          104 -NLPA--------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG-----DVVDVVDVIHIT  163 (270)
Q Consensus       104 -~~~~--------------~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g-----~~~Givt~~dll  163 (270)
                       ....              .......+|.++++++++++++.+|+..|.+++++++||+|++|     +++|+||.+||+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIl  165 (179)
T d2ooxe1          86 SSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL  165 (179)
T ss_dssp             CSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHH
T ss_pred             ccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHH
Confidence             0000              01234457888999999999999999999999999999999654     699999999999


Q ss_pred             HHHHHH
Q 024256          164 HAAVAT  169 (270)
Q Consensus       164 ~~~~~~  169 (270)
                      +++...
T Consensus       166 k~l~~~  171 (179)
T d2ooxe1         166 KFISMN  171 (179)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            986543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.7e-19  Score=136.99  Aligned_cols=124  Identities=16%  Similarity=0.173  Sum_probs=103.6

Q ss_pred             CCccccccC-CCceeEECCCCCHHHHHHHHHHCCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC-CCCccch------h
Q 024256           43 PSLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLV------E  113 (270)
Q Consensus        43 ~~v~~im~~-~~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~-~~~~~Givt~~dl~~~~~~~~~-~~~~~~v------~  113 (270)
                      .++++++.. .++++++.+++|+.+|++.|.+++++++||++ +|+++|++|..|++ +.+.... .....++      .
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~-~~l~~~~~~~~~~~v~~~~~~~   87 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVI-NLAAEKTYNNLDVSVTKALQHR   87 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTG-GGGGSSCCCCCSSBHHHHGGGC
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhh-hhhhcccccchhhhhhhccchh
Confidence            456666542 25789999999999999999999999999999 88999999999997 5554332 2222333      3


Q ss_pred             hccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          114 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       114 ~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      ..|.++++++.+++++.++++.|.+++++++||+|++|+++|+||.+||+++++
T Consensus        88 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          88 SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            446678889999999999999999999999999999999999999999999855

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.78  E-value=8.7e-21  Score=140.90  Aligned_cols=109  Identities=20%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             CceeEECCCCCHHHHHHHHHHCCCcEEEEEe----CCEEEEEeeHHHHHHHHHhcCCCCCccchhhccC--CCCeeecCC
Q 024256           53 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT--PNPECATID  126 (270)
Q Consensus        53 ~~~~~v~~~~tv~~a~~~m~~~~~~~i~Vv~----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~im~--~~~~~v~~~  126 (270)
                      +++++++|++|+.+|+++|.+++++++||++    +++++|++|.+|+. .......   +.++..+|.  +++++++++
T Consensus         4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~-~~~~~~~---~~~~~~~~~~~~~~~~v~~~   79 (120)
T d1jr1a4           4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID-FLKEEEH---DRFLEEIMTKREDLVVAPAG   79 (120)
T ss_dssp             CTTCC----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEETT
T ss_pred             cCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeee-ehhcccc---CceeEEEEeeccCceEECCC
Confidence            4678999999999999999999999999997    46899999999984 4433322   345666654  478899999


Q ss_pred             CCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          127 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       127 ~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++.+|+++|.+++++++||+|++|+++|+||.+||+++
T Consensus        80 ~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          80 ITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             CCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             CCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            999999999999999999999999999999999999985

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=4.6e-16  Score=119.99  Aligned_cols=57  Identities=25%  Similarity=0.331  Sum_probs=54.4

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +.++.++|.++++++++++++.+|++.|.+++++.+||+|++|+++|+||..|+++.
T Consensus         3 ~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~   59 (156)
T d2yzqa1           3 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRD   59 (156)
T ss_dssp             GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGC
T ss_pred             CCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhh
Confidence            468999999999999999999999999999999999999999999999999999874

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.57  E-value=6.7e-15  Score=109.55  Aligned_cols=125  Identities=17%  Similarity=0.209  Sum_probs=83.9

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKF  188 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  188 (270)
                      ...|+++|+++++++++++++.+|+++|.+++++.+||+| +|+++|++|..|+++....... ...++.+    .+   
T Consensus         3 ~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~-~~~~v~~----~~---   73 (127)
T d2ef7a1           3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS-LETKAEE----FM---   73 (127)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC-TTCBGGG----TS---
T ss_pred             ccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhcc-ccchhhh----hh---
Confidence            4579999999999999999999999999999999999998 5899999999999986331110 0000000    00   


Q ss_pred             HHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhhhc
Q 024256          189 WDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYEY  268 (270)
Q Consensus       189 ~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~~  268 (270)
                      ...+..+.    ...+..++.+.+....          ..        ..+|+|++|++    +|++|+.||+++|...|
T Consensus        74 ~~~~~~v~----~~~~l~~~~~~m~~~~----------~~--------~l~Vvd~~~~l----vGiit~~Dll~~i~~~~  127 (127)
T d2ef7a1          74 TASLITIR----EDSPITGALALMRQFN----------IR--------HLPVVDDKGNL----KGIISIRDITRAIDDMF  127 (127)
T ss_dssp             EECCCCEE----TTSBHHHHHHHHHHHT----------CS--------EEEEECTTSCE----EEEEEHHHHHHHHHHHC
T ss_pred             hhhccccc----cccchhHHHHHHHHcC----------ce--------EEEEEeCCCeE----EEEEEHHHHHHHHHhhC
Confidence            00000000    0012222222221110          11        36799999999    99999999999998876

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.56  E-value=9.3e-16  Score=116.13  Aligned_cols=61  Identities=25%  Similarity=0.383  Sum_probs=56.2

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHh
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  170 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~  170 (270)
                      .+++++|++++.++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++......
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~   62 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSL   62 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhh
Confidence            3689999999999999999999999999999999999999999999999999998755443

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=9.7e-16  Score=114.97  Aligned_cols=58  Identities=14%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             cchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          110 TLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       110 ~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      .+++++|.|  ++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+.
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~   61 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF   61 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhh
Confidence            578999965  8899999999999999999999999999998999999999999998743

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=1.5e-15  Score=112.46  Aligned_cols=57  Identities=16%  Similarity=0.254  Sum_probs=53.4

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~  166 (270)
                      ++++++|+++++++++++++.+|++.|.+++++.+||+|++|+++|++|.+||+...
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~   57 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKG   57 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTT
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhh
Confidence            368999999999999999999999999999999999999889999999999998753

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=4.5e-15  Score=112.36  Aligned_cols=58  Identities=24%  Similarity=0.361  Sum_probs=54.8

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      .||+++|+++++++++++|+.+|+++|.+++++++||+|++++++|+++..|+++...
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~   59 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA   59 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhh
Confidence            3799999999999999999999999999999999999999999999999999998744

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=9.7e-16  Score=113.44  Aligned_cols=55  Identities=29%  Similarity=0.443  Sum_probs=38.5

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++++|+++++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|++..
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~   56 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN   56 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC---
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh
Confidence            5889999999999999999999999999999999999999999999999999864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.51  E-value=2.8e-14  Score=105.98  Aligned_cols=50  Identities=14%  Similarity=0.280  Sum_probs=45.7

Q ss_pred             cCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC--CCcEEEEEeHHHHHHH
Q 024256          116 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDVVDVIHITHA  165 (270)
Q Consensus       116 m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~g~~~Givt~~dll~~  165 (270)
                      |..+|+++++++++.+|+++|.+++++.+||+|+  +|+++|+||.+|+...
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~   54 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI   54 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHh
Confidence            5567889999999999999999999999999996  6889999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.50  E-value=1.6e-14  Score=107.54  Aligned_cols=119  Identities=14%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCC-----CCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMM  185 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~-----~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~  185 (270)
                      +++.+|+++++++++++++.+|++.|++++     ++.+||+|++|+++|+++.++++..      ....++.+    .+
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~------~~~~~v~~----im   71 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------DDDTLIAD----IL   71 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS------CTTSBHHH----HS
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc------cccEEhhh----hc
Confidence            578999999999999999999999998774     6899999999999999999999863      11111111    00


Q ss_pred             HHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhh
Q 024256          186 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTN  265 (270)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~  265 (270)
                         ......+.+    ..+..++.+.+..          +...        ..+|+|++|++    +|+||.+||++.++
T Consensus        72 ---~~~~~~v~~----~~~l~~a~~~m~~----------~~~~--------~lPVVD~~g~l----vGiIt~~Dil~~i~  122 (127)
T d2ouxa2          72 ---NERVISVHV----GDDQEDVAQTIRD----------YDFL--------AVPVTDYDDHL----LGIVTVDDIIDVID  122 (127)
T ss_dssp             ---BSCCCCEET----TSBHHHHHHHHHH----------HTCS--------EEEEECTTCBE----EEEEEHHHHHHHHH
T ss_pred             ---cCCCccCCC----CCCHHHHHHHHHH----------hCCE--------EEEEEeCCCEE----EEEEEHHHHHHHHH
Confidence               001111111    1223333333311          1112        48899999999    99999999999998


Q ss_pred             hhc
Q 024256          266 YEY  268 (270)
Q Consensus       266 ~~~  268 (270)
                      .+-
T Consensus       123 eea  125 (127)
T d2ouxa2         123 DEA  125 (127)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            763

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=4.6e-15  Score=109.57  Aligned_cols=118  Identities=21%  Similarity=0.195  Sum_probs=82.6

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWD  190 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (270)
                      .++++|+++++++++++++.+|+++|.+++.+.+||+|++|+++|+++..|+++.      ....+..+...       .
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~------~~~~~v~~~~~-------~   68 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL------DLDSSVFNKVS-------L   68 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS------CTTSBSGGGCB-------C
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh------hcccccccccc-------C
Confidence            5889999999999999999999999999999999999999999999999999863      11111110000       0


Q ss_pred             HhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhhhh
Q 024256          191 SAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTNYE  267 (270)
Q Consensus       191 ~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~~~  267 (270)
                      ....+.    ...+..+..+.+.....                  ..++|+|++|++    +|+||.+|+++++..+
T Consensus        69 ~~~~v~----~~~~l~~~~~~~~~~~~------------------~~lpVvde~g~~----~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          69 PDFFVH----EEDNITHALLLFLEHQE------------------PYLPVVDEEMRL----KGAVSLHDFLEALIEA  119 (121)
T ss_dssp             TTCCEE----TTSBHHHHHHHHHHCCC------------------SEEEEECTTCBE----EEEEEHHHHHHHHHHS
T ss_pred             ccEEEC----CCCCHHHHHHHHHhcCc------------------eeeeeECCCCeE----EEEEEHHHHHHHHHHh
Confidence            000000    01233333333311111                  137899999999    9999999999998754

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.50  E-value=2.6e-14  Score=108.44  Aligned_cols=56  Identities=29%  Similarity=0.414  Sum_probs=53.7

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .+++++|++++.++++++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++.
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~   58 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKR   58 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhh
Confidence            47999999999999999999999999999999999999999999999999999986

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=7e-14  Score=106.11  Aligned_cols=59  Identities=22%  Similarity=0.327  Sum_probs=54.3

Q ss_pred             cchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          110 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       110 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      ..+.++|+.+++++++++++.+|++.|.+++++.+||+|++|+++|+||..||++....
T Consensus         4 ~~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~   62 (145)
T d1o50a3           4 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF   62 (145)
T ss_dssp             HHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             eEhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhc
Confidence            35778899999999999999999999999999999999989999999999999987543

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1.3e-14  Score=109.69  Aligned_cols=129  Identities=15%  Similarity=0.289  Sum_probs=81.1

Q ss_pred             cchhh---ccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 024256          110 TLVEK---VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQ  186 (270)
Q Consensus       110 ~~v~~---im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~~  186 (270)
                      .|+++   +|..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++......................
T Consensus         6 ~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~   85 (140)
T d2nyca1           6 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS   85 (140)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC
T ss_pred             CcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhh
Confidence            45554   467789999999999999999999999999999999999999999999987543221111111110000000


Q ss_pred             HHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhh
Q 024256          187 KFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVT  264 (270)
Q Consensus       187 ~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i  264 (270)
                      ........+.    ...+..++++.+....          ..        ..+|+|++|++    +|+||++||++.+
T Consensus        86 ~~~~~~~~v~----~~~~l~~~~~~~~~~~----------~~--------~l~VVd~~~~l----~GiIt~~Dii~~l  137 (140)
T d2nyca1          86 DDFEGVYTCT----KNDKLSTIMDNIRKAR----------VH--------RFFVVDDVGRL----VGVLTLSDILKYI  137 (140)
T ss_dssp             ------CEEC----TTSBHHHHHHHHHHHT----------CS--------EEEEECTTSBE----EEEEEHHHHHHHH
T ss_pred             hcccccEEEC----CCCcHHHHHHHHHhcC----------ee--------EEEEEeCCCeE----EEEEEHHHHHHHH
Confidence            0011111111    0123333333331111          11        37799999999    9999999999986

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=2.5e-14  Score=107.11  Aligned_cols=57  Identities=21%  Similarity=0.217  Sum_probs=54.6

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ..||+++|+++++++++++++.+|++.|.+++++.+||+|++|+++|+||..|+++.
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~   60 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR   60 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999986

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.48  E-value=4.3e-14  Score=105.51  Aligned_cols=56  Identities=13%  Similarity=0.074  Sum_probs=51.8

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEe--CCCcEEEEEeHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITHAA  166 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd--~~g~~~Givt~~dll~~~  166 (270)
                      +++++|+++++++++++++.+|++.|.+++++++||++  ++++++|+++..|+.+..
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~   59 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV   59 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHH
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccc
Confidence            68999999999999999999999999999999999994  458899999999999863

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.48  E-value=1.2e-13  Score=106.30  Aligned_cols=61  Identities=16%  Similarity=0.276  Sum_probs=55.6

Q ss_pred             ccchhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC--CCcEEEEEeHHHHHHHHHHH
Q 024256          109 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDVVDVIHITHAAVAT  169 (270)
Q Consensus       109 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~g~~~Givt~~dll~~~~~~  169 (270)
                      ..+++++|+++++++++++++.+|+++|.+++++.+||+|+  ++.++|+++..|++..+...
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~   72 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   72 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhc
Confidence            57999999999999999999999999999999999999984  46899999999999875543

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=1.3e-14  Score=110.36  Aligned_cols=118  Identities=17%  Similarity=0.245  Sum_probs=79.8

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCC-----CCEEEEEeCCCcEEEEEeHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMM  185 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~-----~~~lpVvd~~g~~~Givt~~dll~~~~~~~~~~~~~~~~~~~~~~  185 (270)
                      +++.+|+++++++++++++.+|++.|++++     +..+||+|++|+++|+++.+|+...      .......+.    +
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~------~~~~~v~~i----m   71 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------DPRTRVAEI----M   71 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS------CTTCBSTTT----S
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc------ccccchHHh----c
Confidence            578999999999999999999999998774     6789999999999999999999753      111111000    0


Q ss_pred             HHHHHHhhccCCCCCCCccccccccccccCCCCccccccCCCCCCCCCCceeEEeecCCCCeeEeecCCCChHHHHHhhh
Q 024256          186 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFPNFIEVTN  265 (270)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~t~~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VvD~~g~l~~~~vGivs~~Dil~~i~  265 (270)
                         ......+.    ...+..++.+.+....                  ....+|||++|++    +|+||.+||++.+.
T Consensus        72 ---~~~~~~v~----~~~~~~~a~~~m~~~~------------------~~~lPVVd~~g~l----vGiIt~~Dil~~l~  122 (144)
T d2yvxa2          72 ---NPKVVYVR----TDTDQEEVARLMADYD------------------FTVLPVVDEEGRL----VGIVTVDDVLDVLE  122 (144)
T ss_dssp             ---BSSCCCEE----SSCCHHHHHHHHHHSC------------------CSEEEEECSSCBE----EEEEEHHHHHHHHH
T ss_pred             ---ccCCccCC----CCChHHHHHHHHHHcC------------------CCEEEEEeECCEE----EEEEEHHHHHHHHH
Confidence               00000000    0122222222221111                  1147899999999    99999999999986


Q ss_pred             hh
Q 024256          266 YE  267 (270)
Q Consensus       266 ~~  267 (270)
                      .+
T Consensus       123 ~e  124 (144)
T d2yvxa2         123 AE  124 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=6.1e-14  Score=103.22  Aligned_cols=57  Identities=23%  Similarity=0.237  Sum_probs=52.5

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  168 (270)
                      +++++|+++++++++++|+.+|++.|.+++.+.+||++ +|+++|+||.+||++.+..
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~   57 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAE   57 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccc
Confidence            47899999999999999999999999999999999998 5899999999999987554

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.42  E-value=3.8e-14  Score=108.80  Aligned_cols=57  Identities=16%  Similarity=0.442  Sum_probs=50.9

Q ss_pred             chhhccC---CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHHHH
Q 024256          111 LVEKVMT---PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       111 ~v~~im~---~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  167 (270)
                      |+++++.   .+++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+.
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~   61 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQ   61 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHG
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhc
Confidence            5667654   37899999999999999999999999999999999999999999988643

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.40  E-value=2.6e-13  Score=100.77  Aligned_cols=54  Identities=15%  Similarity=0.221  Sum_probs=49.7

Q ss_pred             chhhccC---CCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          111 LVEKVMT---PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       111 ~v~~im~---~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++++|+   ++++++++++++.+|+++|.+++++.+||++ +|+++|++|.+|+++.
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~   59 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRK   59 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhh
Confidence            5788886   3789999999999999999999999999998 7899999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=8.4e-14  Score=105.76  Aligned_cols=56  Identities=29%  Similarity=0.401  Sum_probs=50.0

Q ss_pred             cchhhcc---CCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          110 TLVEKVM---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       110 ~~v~~im---~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      .++++++   ..+++++++++++.+|++.|.+++++.+||+|++|+++|+||..|++..
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~   67 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL   67 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGG
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhh
Confidence            4566664   3478999999999999999999999999999999999999999999875

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.32  E-value=3.9e-14  Score=104.33  Aligned_cols=49  Identities=14%  Similarity=0.301  Sum_probs=17.1

Q ss_pred             cCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeC---CCcEEEEEeHHHHHH
Q 024256          116 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR---DGDVVDVVDVIHITH  164 (270)
Q Consensus       116 m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~g~~~Givt~~dll~  164 (270)
                      |.++|+++++++++.+|+++|.+++++.+||+|+   +|+++|+||.+|+..
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~   53 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDF   53 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC----------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeee
Confidence            4567789999999999999999999999999985   578999999999864

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=8e-13  Score=101.70  Aligned_cols=59  Identities=8%  Similarity=0.086  Sum_probs=52.3

Q ss_pred             ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeC-CCcEEEEEeHHHHHHHHH
Q 024256          109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~  167 (270)
                      ..++.|+|.+  ++++++.++++.+|++.|.+++++.+||+|+ +++++|++|..|++....
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~   73 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH   73 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHH
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHH
Confidence            3578999965  6789999999999999999999999999985 588999999999998743

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.31  E-value=4.8e-13  Score=100.16  Aligned_cols=53  Identities=13%  Similarity=0.266  Sum_probs=49.7

Q ss_pred             chhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          111 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       111 ~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      +++++|+++++++++++++.+|++.|.+++++++||+|+  +++|+++..|++..
T Consensus         2 ~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~   54 (135)
T d3ddja2           2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLST   54 (135)
T ss_dssp             SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGG
T ss_pred             EeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhh
Confidence            589999999999999999999999999999999999973  69999999999976

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.1e-12  Score=97.72  Aligned_cols=58  Identities=21%  Similarity=0.221  Sum_probs=48.0

Q ss_pred             cchhhccCC----CC--eeecCCCCHHHHHHHhHhCCCCEEEEE--eCCCcEEEEEeHHHHHHHHH
Q 024256          110 TLVEKVMTP----NP--ECATIDTPIVDALHIMHDGKFLHLPVV--DRDGDVVDVVDVIHITHAAV  167 (270)
Q Consensus       110 ~~v~~im~~----~~--~~v~~~~~l~~a~~~~~~~~~~~lpVv--d~~g~~~Givt~~dll~~~~  167 (270)
                      ..++|+|.|    ++  +.+.+++++.+|+++|.+++++.+||+  +++++++|++|.+||+.++.
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~   68 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE   68 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHh
Confidence            357888875    22  445678899999999999999999999  45678999999999998743

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.24  E-value=6.7e-12  Score=98.28  Aligned_cols=60  Identities=8%  Similarity=0.112  Sum_probs=53.3

Q ss_pred             ccchhhccCC--CCeeecCCCCHHHHHHHhHhCCCCEEEEEeC-CCcEEEEEeHHHHHHHHHH
Q 024256          109 STLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHAAVA  168 (270)
Q Consensus       109 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~~  168 (270)
                      ...+.++|.+  ++++++++.++.+|++.|.+++++.+||+|+ +++++|++|..|+++.+..
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            3579999975  7899999999999999999999999999994 5899999999999987543

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=84.75  E-value=0.0051  Score=47.61  Aligned_cols=111  Identities=12%  Similarity=-0.020  Sum_probs=76.6

Q ss_pred             cccccCCCceeEECCCCCHHHHHHHHHHCCCcE-------------EEEEe-CCEEEEEeeHHHHHHHHHhcCCCCCccc
Q 024256           46 STIIPEKSKVVTISPTDTVLMATKKMLELRLSS-------------AVVTV-ENKPRGILTSKDILMRVISQNLPADSTL  111 (270)
Q Consensus        46 ~~im~~~~~~~~v~~~~tv~~a~~~m~~~~~~~-------------i~Vv~-~~~~~Givt~~dl~~~~~~~~~~~~~~~  111 (270)
                      +.+|.  ..........+...+.+.+.......             .++.+ .+++.|+.+..++....       ....
T Consensus        68 ~~~~~--~~~~~~~~~~~~~~v~~il~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~-------~~~~  138 (213)
T d1lkvx_          68 KKISG--FVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRS-------IQLV  138 (213)
T ss_dssp             HHHHH--HHHHHHSSCCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHH-------HHHH
T ss_pred             hcccc--ccchhhhcchHHHHHHHHHHhcccccchhheeeeeecChhhhhhHhhhccccccHHHHcccc-------HhHH
Confidence            33444  33445566667777776665432111             01123 45566666655553111       1356


Q ss_pred             hhhccCCCCeeecCCCCHHHHHHHhHhCCCCEEEEEeCCCcEEEEEeHHHHHHH
Q 024256          112 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  165 (270)
Q Consensus       112 v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~g~~~Givt~~dll~~  165 (270)
                      ++++|...+.++..+++..++.++|.+.+....||++++++.+|.|+..|+..+
T Consensus       139 l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         139 LREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             HTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             HHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            788888888889999999999999999999999999999999999999998765