Citrus Sinensis ID: 024271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MSYSRDSSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQGFHHQI
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEcccHHHHcccccccHHHccccccccccccccccccccccccccccccccccccEcccHHHHHHcccccccccccEEcccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEcccHHHHHccccccccccc
Coil and Loop (DISEMBL)
msysrdssenVVHIIVgngapehwipnpndssvwateddypddppsisnsncqsqtrsnseqppnkksrngsqdvnskSKAIGKMFFKTKlcckfrngtcpyitncnfahsieelrrpppnwQEIVAAHEEerastneipreefqipsivstnFAVETQrsykgrhckkfyteegcpygenctflhdeqsknresvaislgpggyggggaaaaaagnnigvsnvkpsnwktricnkweltgycpfgnkchfahGIQEFCIYGIQGFHHQI
Flexible Loop (DISEMBL)
msysrdssenVVHIIvgngapehwipNPNDSSVWATEDDYPDDPPSIsnsncqsqtrsnseqppnkksrngsqdvnskSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEerastneipreefqipsivstnfavetqrsykGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNnigvsnvkpsnwKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQGFHHQI
Low Complexity Region (SEG)
MSYSRDSSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLgpggyggggaaaaaagNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQGFHHQI
Disordered region (IsUnstruct)
**********VVHIIVGNGAPEHWI********************************************************IGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELR*****W**I******************FQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD*********AISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQGFH***
Disordered Region (DISOPRED)
*****************************************************************************************KLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVA****************FQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE*************
Disordered Region (DISEMBL)
*********NVVHIIVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSI******************************KSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQGFHHQI
Disordered Region (DISPRO)
*****DSSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYP*****************************************GKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAA*******************************RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGA**************KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYSRDSSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQGFHHQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q9LQM3	384	Zinc finger CCCH domain-c	yes	no	0.937	0.658	0.567	3e-80
Q84UQ3	367	Zinc finger CCCH domain-c	yes	no	0.914	0.673	0.544	8e-72
Q9LT81	386	Zinc finger CCCH domain-c	no	no	0.655	0.458	0.406	1e-31
Q5PP65	252	Zinc finger CCCH domain-c	no	no	0.596	0.638	0.430	6e-21
Q7F8R0	300	Zinc finger CCCH domain-c	no	no	0.337	0.303	0.344	1e-09
Q69XQ3	295	Zinc finger CCCH domain-c	no	no	0.337	0.308	0.38	1e-09
Q7XPK1	309	Zinc finger CCCH domain-c	no	no	0.381	0.333	0.365	9e-09
A2ZVY5	333	Zinc finger CCCH domain-c	no	no	0.070	0.057	0.410	1e-06
Q6L5G1	343	Zinc finger CCCH domain-c	no	no	0.266	0.209	0.321	9e-06
Q9C9F5	308	Zinc finger CCCH domain-c	no	no	-0.04	-0.03	0.620	1e-05

>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 169/298 (56%), Positives = 201/298 (67%), Gaps = 45/298 (15%)

Query: 3   YSRDSSENVVHII-VGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSE 61
           + RDS  +VVH+I   N  P++W PN  DS+VWATEDDY     + + +     T  ++ 
Sbjct: 4   HRRDSGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDY-----NRAWAMNPDNTSGDNN 58

Query: 62  QPPNKKSRNG--------SQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIE 113
            PPNKK+R          +   ++++KAIGKMFFKTKLCCKFR GTCPYITNCNFAH++E
Sbjct: 59  GPPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVE 118

Query: 114 ELRRPPPNWQEIVAAHEEERA--------STNEIPREEFQIPSIVSTNFAVETQRSYKGR 165
           ELRRPPPNWQEIVAAHEEER+        S  EIPREEFQIPS+VS+    E+ RS+KGR
Sbjct: 119 ELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSS--TAESGRSFKGR 176

Query: 166 HCKKFYTEEGCPYGENCTFLHDEQSKNRESVAI--------SLGPGGYGGGGAAAAAAGN 217
           HCKKFYTEEGCPYGE+CTFLHDE S+NRESVAI        S G GG GGG      + +
Sbjct: 177 HCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSS 236

Query: 218 NIGVSN-------------VKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
           N+ V               +KPSNWKTRICNKWE+TGYCPFG KCHFAHG  E   +G
Sbjct: 237 NVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFG 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=2 SV=1

 Score =  270 bits (690), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 153/281 (54%), Positives = 176/281 (62%), Gaps = 34/281 (12%)

Query: 10  NVVHIIVGNGAPEHWI---PNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNK 66
           N +HII     P+ W        D+ +WATEDDY +   +       S    + + PP K
Sbjct: 5   NAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDY-NSQWNADGGGGGSSRAGSEQPPPGK 63

Query: 67  KSRNGSQDV----NSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNW 122
           KSR G         SKS+AIGKMFFKTKLCCKFR GTCPY+TNCNFAH +EELR+PPPNW
Sbjct: 64  KSRGGGGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNW 123

Query: 123 QEIVAAHEEERASTNEIPREEFQIPSIVSTN------------FAVETQRSYKGRHCKKF 170
           QEIVAAHEE   +     REE QIP + S+                 + R+YKGRHCKKF
Sbjct: 124 QEIVAAHEEATEA-----REEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKF 178

Query: 171 YTEEGCPYGENCTFLHDEQSKNRESVAISLGPG--------GYGGGGAAAAAAGNNIGVS 222
           YT+EGCPYG+ CTFLHDEQSK RESVAISL P          Y    AAAA+A    G  
Sbjct: 179 YTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAASASAAAGNG 238

Query: 223 NV-KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
            + KPSNWKTRICNKWE+TGYCPFG+KCHFAHG  E   YG
Sbjct: 239 PMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYG 279

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 109/204 (53%), Gaps = 27/204 (13%)

Query: 80  KAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIV----AAHEEERAS 135
           K    +F+KT++C KFR GTC     CNFAH IE+LR+PP NWQEIV    A  + ER  
Sbjct: 98  KGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERER 157

Query: 136 TNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQS----- 190
             E  RE   +  +V+ N+  + +   + + C+KF   E CPYG+ C F+H++ S     
Sbjct: 158 ERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRED 217

Query: 191 --KNRESVAISLGPGGYG--------------GGGAAAAAAGNNIGVSNVKPSNWKTRIC 234
             K RES  IS+G                    G     A  NN GV  VK   WKTR+C
Sbjct: 218 SGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGV--VKTVYWKTRLC 275

Query: 235 NKWELTGYCPFGNKCHFAHGIQEF 258
            K+++TG CPFG+KCHFAHG  E 
Sbjct: 276 MKFDITGQCPFGDKCHFAHGQAEL 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana GN=At2g35430 PE=2 SV=1

 Score =  101 bits (252), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 102/193 (52%), Gaps = 32/193 (16%)

Query: 1   MSYSRDSSENVVHI-IVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSN 59
           MS+ RD   + VH+ I  +  PE+  PN  DSSVWATEDDY         S   +     
Sbjct: 1   MSHRRDYGSDAVHVRITHDPPPENCFPNSGDSSVWATEDDY---------SRVWAINSDG 51

Query: 60  SEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPY-ITNCNFAHSIEELR-- 116
           +E P  K   + S +       IGK FFKTKLC KFR GTCPY  ++C+FAHS EELR  
Sbjct: 52  AESPSKKTRSSSSSE-------IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLP 104

Query: 117 -RPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRS--YKGRHCKKFYTE 173
             PPPNWQE V       AS N   RE F +      N A +T +S  +K R C K+ T 
Sbjct: 105 PPPPPNWQETVT-----EASRN---RESFAVSLGPRGNVA-QTLKSPNWKTRICNKWQTT 155

Query: 174 EGCPYGENCTFLH 186
             CP+G +C F H
Sbjct: 156 GYCPFGSHCHFAH 168

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 25/116 (21%)

Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGG------- 207
           + +T    K + C KF++  GCP+GE C FLH               PGGY         
Sbjct: 27  SFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHF-------------PGGYQAVAKMTNL 73

Query: 208 GGAAAAAAGNNIGVSNVKPS-----NWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
           GG A A     + + N  P        KTR+CNK+     C +G+KCHFAHG +E 
Sbjct: 74  GGPAIAPPPGRMPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGEREL 129

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN=Os06g0618100 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 9/100 (9%)

Query: 163 KGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGN---NI 219
           K + C KF++  GCP+G +C FLH+     + +  ++       GG A AA  G      
Sbjct: 34  KLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQAAAKMT-----SHGGTAVAAPPGRMPLGP 88

Query: 220 GVSNVKP-SNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
           G  N  P S+ KTR+CNK+     C +G+KCHFAHG +E 
Sbjct: 89  GAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGEREL 128

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica GN=Os04g0665700 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAA 214
           + +T  S K + C KF++  GCP+GE C F H       ++VA +L  G       A A 
Sbjct: 31  SFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPG-GYQAVAKTLNLGNPAVPAPARAP 89

Query: 215 AGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
             +  G ++   S+ KTR+C K+     C FG+KCHFAHG +E 
Sbjct: 90  MDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGEREL 133

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=Os01g0645000 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 203 GGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
           GG  G    A  A +   +       +KT +CNKWE TG CP+G++C FAHG+ E 
Sbjct: 233 GGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTEL 288

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa subsp. japonica GN=Os05g0576300 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 187 DEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKP------------SNWKTRIC 234
           ++  K+R S  +++G      G   A    + +GV   +P              +KT +C
Sbjct: 215 NQGGKHRVSKPVNVGSQRVFVGIDGAEGGEHKVGVKKEEPPMGGLEFEVYNQGMFKTELC 274

Query: 235 NKWELTGYCPFGNKCHFAHGIQEF 258
           NKWE TG CP+G++C FAHG+ E 
Sbjct: 275 NKWEETGACPYGDQCQFAHGVAEL 298

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 230 KTRICNKWELTGYCPFGNKCHFAHGIQEF 258
           KT +CNKW+ TG CP+G+ C FAHGI+E 
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKEL 252

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
255573451	349	nucleic acid binding protein, putative [	0.937	0.724	0.715	1e-91
224074291	371	predicted protein [Populus trichocarpa]	0.948	0.690	0.693	4e-91
224138948	372	predicted protein [Populus trichocarpa]	0.925	0.672	0.659	8e-89
359474468	372	PREDICTED: zinc finger CCCH domain-conta	0.881	0.639	0.687	1e-87
449520671	350	PREDICTED: zinc finger CCCH domain-conta	0.914	0.705	0.685	1e-86
449436820	339	PREDICTED: zinc finger CCCH domain-conta	0.881	0.702	0.667	6e-86
297742083	285	unnamed protein product [Vitis vinifera]	0.822	0.778	0.661	3e-83
356495861	368	PREDICTED: zinc finger CCCH domain-conta	0.937	0.687	0.640	3e-82
357516999	376	Zinc finger CCCH domain-containing prote	0.944	0.678	0.606	1e-80
297846208	385	zinc finger (CCCH-type) family protein [	0.937	0.657	0.573	2e-79

>gi|255573451|ref|XP_002527651.1| nucleic acid binding protein, putative [Ricinus communis] gi|223532956|gb|EEF34722.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/271 (71%), Positives = 211/271 (77%), Gaps = 18/271 (6%)

Query: 1   MSYSRDSSENVVHIIVGNGAPEHWIPNPNDSSV-WATEDDY-----PDDPPSISNSNCQS 54
           M YSRD   NVVH+I G G P++W+PN  DS V WATEDDY      D P   + SN   
Sbjct: 1   MDYSRD---NVVHVIPGTG-PDNWLPNSADSGVVWATEDDYQMWNNSDGPNDNTPSNSSF 56

Query: 55  QTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEE 114
           Q+RS SE PPNKKS+N SQ+++SK K+IGKMFFKTKLCCKFR GTCPYITNCNFAHSIEE
Sbjct: 57  QSRSGSE-PPNKKSKNNSQELSSK-KSIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEE 114

Query: 115 LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEE 174
           LRRPPPNWQEIVAAHEEER +  E+ REEFQIPSI    F+ E+QRSYKGRHCKKFYTEE
Sbjct: 115 LRRPPPNWQEIVAAHEEERGNVMEV-REEFQIPSI--GGFSGESQRSYKGRHCKKFYTEE 171

Query: 175 GCPYGENCTFLHDEQSKNRESVAISL---GPGGYGGGGAAAAAAGNNIGVSNVKPSNWKT 231
           GCPYG+NCTFLHDEQSKNRESVAISL   G GG GGGGA +          NVKPSNWKT
Sbjct: 172 GCPYGDNCTFLHDEQSKNRESVAISLGPGGYGGGGGGGAGSGNGSGGGSAGNVKPSNWKT 231

Query: 232 RICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
           RICNKWELTGYCPFGNKCHFAHG  E   YG
Sbjct: 232 RICNKWELTGYCPFGNKCHFAHGAAELHRYG 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074291|ref|XP_002304341.1| predicted protein [Populus trichocarpa] gi|222841773|gb|EEE79320.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 201/290 (69%), Positives = 219/290 (75%), Gaps = 34/290 (11%)

Query: 1   MSYSRD-SSENVVHIIVGNGAPEHWIPNPNDSS-VWATEDDYPD-------DPPSISNSN 51
           M  +RD S  NVVH+I  +  PE WI N +DSS VWATEDDY D       +  + SNSN
Sbjct: 1   MDCNRDFSGGNVVHVIPISD-PESWILNSSDSSSVWATEDDYRDWNNSDILNDNASSNSN 59

Query: 52  CQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHS 111
            QS TRS SE PPNKKS+N SQ++NSK K+IGKMFFKTKLCCKFR GTCPYITNCNFAHS
Sbjct: 60  YQSSTRSGSE-PPNKKSKNNSQELNSK-KSIGKMFFKTKLCCKFRAGTCPYITNCNFAHS 117

Query: 112 IEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFY 171
           IEELRRPPPNWQ+IVAAHEEE+ +T ++ REEFQIPSIV   F  ETQRSYKGRHCKKFY
Sbjct: 118 IEELRRPPPNWQDIVAAHEEEKGNTVDV-REEFQIPSIVG--FGAETQRSYKGRHCKKFY 174

Query: 172 TEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNI------------ 219
           TEEGCPYG+NCTFLHDEQSKNRESVAISLGPGGYGGG  A A AG  +            
Sbjct: 175 TEEGCPYGDNCTFLHDEQSKNRESVAISLGPGGYGGGSGAGAGAGVGVGVGVGGGGGGEG 234

Query: 220 -------GVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
                     NVKPSNWKTRICNKWELTGYCPFGNKCHFAHG+ E   YG
Sbjct: 235 GGGNAGSNAVNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGVGELHRYG 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138948|ref|XP_002326730.1| predicted protein [Populus trichocarpa] gi|222834052|gb|EEE72529.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (852), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 196/297 (65%), Positives = 213/297 (71%), Gaps = 47/297 (15%)

Query: 1   MSYSRD-SSENVVHIIVGNGAPEHWIPNPNDS-SVWATEDDYP---------DDPPSISN 49
           M Y+RD S  NV+ I      P+ WI N +DS SVWATEDDY          D+ PS  N
Sbjct: 1   MDYNRDFSGVNVIPIT----GPDSWISNSSDSNSVWATEDDYRFWNNSDGLNDNTPS--N 54

Query: 50  SNCQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFA 109
           SN QS    +  +PPNKKS+N SQ++NSK K+IGKMFFKTKLCCKFR GTCPYITNCNFA
Sbjct: 55  SNYQSSETLSGSEPPNKKSKNNSQELNSK-KSIGKMFFKTKLCCKFRAGTCPYITNCNFA 113

Query: 110 HSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKK 169
           HS+EELRRPPPNWQEIVAAHEEER +T +  REEFQIPSIV   F  ETQRSYKGRHCKK
Sbjct: 114 HSMEELRRPPPNWQEIVAAHEEERGNTVDA-REEFQIPSIVG--FGAETQRSYKGRHCKK 170

Query: 170 FYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAA--------------- 214
           FYTEEGCPYG+NCTFLHDEQSKNRESVAISLGPGGYGGGG                    
Sbjct: 171 FYTEEGCPYGDNCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGGGGGGGGGGGGG 230

Query: 215 ---------AGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
                    AG+N    NVKPSNWKTRICNKWELTGYCPFGNKCHFAHG+ E   YG
Sbjct: 231 GGGGGGGGNAGSN--AVNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGVGELHRYG 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474468|ref|XP_002277716.2| PREDICTED: zinc finger CCCH domain-containing protein 12-like [Vitis vinifera]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/266 (68%), Positives = 201/266 (75%), Gaps = 28/266 (10%)

Query: 22  EHWIPNPNDSSVWATEDDYP-------DDPPSISN-SNCQSQTRSNSEQPPNKKSRNGSQ 73
           ++WIP  +D  VWATEDDY         D PS SN    QSQ+RS SE PPNKKSRN SQ
Sbjct: 18  DNWIPGSSDQLVWATEDDYAVWNGDGSGDTPSNSNYEGRQSQSRSGSE-PPNKKSRN-SQ 75

Query: 74  DVNS--------------KSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPP 119
            V+S              +SKAIGKMFFKTKLCCKFR GTCPY+TNCNFAHSI+ELRRPP
Sbjct: 76  VVDSQGNVFGRDRDLPSNRSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIQELRRPP 135

Query: 120 PNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYG 179
           PNWQEIVAAH+EER  ++E PREEFQIPSI S++F VETQRSYKGRHCKKFYT+EGCPYG
Sbjct: 136 PNWQEIVAAHDEERGVSSE-PREEFQIPSIGSSSFGVETQRSYKGRHCKKFYTDEGCPYG 194

Query: 180 ENCTFLHDEQSKNRESVAISL---GPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNK 236
           +NCTFLHDEQSK RESVAISL     GG GGGG      G     SN+KPSNWKTRICNK
Sbjct: 195 DNCTFLHDEQSKARESVAISLGPGAGGGGGGGGGGGGGGGGGGSGSNIKPSNWKTRICNK 254

Query: 237 WELTGYCPFGNKCHFAHGIQEFCIYG 262
           WELTGYCPFG+KCHFAHG+ E   YG
Sbjct: 255 WELTGYCPFGSKCHFAHGMGELHRYG 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520671|ref|XP_004167357.1| PREDICTED: zinc finger CCCH domain-containing protein 12-like [Cucumis sativus]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 185/270 (68%), Positives = 202/270 (74%), Gaps = 23/270 (8%)

Query: 7   SSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYP----------DDPPSISNSNCQSQT 56
           S  NVVH+I G  + E+W        VWATED+Y           D P + S    QSQ+
Sbjct: 4   SGGNVVHVISGT-SNENW-----PGEVWATEDEYRAWNNGGDGSVDTPSNSSYDQRQSQS 57

Query: 57  RSNSEQPPNKKSRNGSQDVNS--KSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEE 114
           RS SE PPNKKSR+ SQDV S  +SKAIGKMFFKTKLCCKFR GTCPYITNCNFAHSIEE
Sbjct: 58  RSGSE-PPNKKSRS-SQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEE 115

Query: 115 LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEE 174
           LRRPP NWQEIVAAHEEE+A  +E PREEFQIPS+ ++NF  E+QRSYKGRHCKKFYTEE
Sbjct: 116 LRRPPHNWQEIVAAHEEEKAVLSE-PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEE 174

Query: 175 GCPYGENCTFLHDEQSKNRESVAISL--GPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTR 232
           GCPYG++CTFLHDEQSKNRESVAISL  G    GGGG      G +   SN KPSNWKTR
Sbjct: 175 GCPYGDSCTFLHDEQSKNRESVAISLGPGGYSGGGGGGGGGGGGGSGNGSNTKPSNWKTR 234

Query: 233 ICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
           ICNKWELTGYCPFGNKCHFAHG  E   YG
Sbjct: 235 ICNKWELTGYCPFGNKCHFAHGAAELHRYG 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436820|ref|XP_004136190.1| PREDICTED: zinc finger CCCH domain-containing protein 12-like [Cucumis sativus]

 Score =  323 bits (827), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 179/268 (66%), Positives = 196/268 (73%), Gaps = 30/268 (11%)

Query: 7   SSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYP----------DDPPSISNSNCQSQT 56
           S  NVVH+I G  + E+W        VWATED+Y           D P + S    QSQ+
Sbjct: 4   SGGNVVHVISGT-SNENW-----PGEVWATEDEYRAWNNGGDGSVDTPSNSSYDQRQSQS 57

Query: 57  RSNSEQPPNKKSRNGSQDVNS--KSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEE 114
           RS SE PPNKKSR+ SQDV S  +SKAIGKMFFKTKLCCKFR GTCPYITNCNFAHSIEE
Sbjct: 58  RSGSE-PPNKKSRS-SQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEE 115

Query: 115 LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEE 174
           LRRPP NWQEIVAAHEEE+A  +E PREEFQIPS+ ++NF  E+QRSYKGRHCKKFYTEE
Sbjct: 116 LRRPPHNWQEIVAAHEEEKAVLSE-PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEE 174

Query: 175 GCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRIC 234
           GCPYG++CTFLHDEQSKNRESVAIS                G +   SN KPSNWKTRIC
Sbjct: 175 GCPYGDSCTFLHDEQSKNRESVAISF---------GGGGGGGGSGNGSNTKPSNWKTRIC 225

Query: 235 NKWELTGYCPFGNKCHFAHGIQEFCIYG 262
           NKWELTGYCPFGNKCHFAHG  E   YG
Sbjct: 226 NKWELTGYCPFGNKCHFAHGAAELHRYG 253

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742083|emb|CBI33870.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 162/245 (66%), Positives = 184/245 (75%), Gaps = 23/245 (9%)

Query: 22  EHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNKKSRN---GSQDVNS- 77
           ++WIP  +D  VWATEDDY     ++ N +    T SNS     +   N     +D+ S 
Sbjct: 18  DNWIPGSSDQLVWATEDDY-----AVWNGDGSGDTPSNSNYEGRQSQSNVFGRDRDLPSN 72

Query: 78  KSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTN 137
           +SKAIGKMFFKTKLCCKFR GTCPY+TNCNFAHSI+ELRRPPPNWQEIVAAH+EER  ++
Sbjct: 73  RSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIQELRRPPPNWQEIVAAHDEERGVSS 132

Query: 138 EIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVA 197
           E PREEFQIPSI S++F VETQRSYKGRHCKKFYT+EGCPYG+NCTFLHDEQSK RESVA
Sbjct: 133 E-PREEFQIPSIGSSSFGVETQRSYKGRHCKKFYTDEGCPYGDNCTFLHDEQSKARESVA 191

Query: 198 ISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
           ISL               G   G SN+KPSNWKTRICNKWELTGYCPFG+KCHFAHG+ E
Sbjct: 192 ISL-------------GPGAGGGGSNIKPSNWKTRICNKWELTGYCPFGSKCHFAHGMGE 238

Query: 258 FCIYG 262
              YG
Sbjct: 239 LHRYG 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495861|ref|XP_003516789.1| PREDICTED: zinc finger CCCH domain-containing protein 56-like [Glycine max]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 185/289 (64%), Positives = 204/289 (70%), Gaps = 36/289 (12%)

Query: 1   MSYSRDSSENVVHIIVGNGAP----EHWIPNPNDSSVWATEDDYP---------DDPPSI 47
           M ++RD   NVV II G G      E W     D + WATED+Y          D   + 
Sbjct: 1   MDFARDG--NVVQIITGGGGGGGGGESW---SGDQADWATEDEYRFWNNNNSGGDSETTP 55

Query: 48  SNSNCQSQTRSNSEQPPNKKSRNGSQDVNS--KSKAIGKMFFKTKLCCKFRNGTCPYITN 105
           SNSN + +    S +PP+KKSRN SQ+ +S  +SKAIGKMFFKTKLCCKFR GTCPYITN
Sbjct: 56  SNSNYEGR----SSEPPSKKSRNSSQEGSSSNRSKAIGKMFFKTKLCCKFRAGTCPYITN 111

Query: 106 CNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVE-TQRSYKG 164
           CNFAHSIEELRRPPPNWQEIVAAHEEE+A   E PREEFQIP++ ST F+ E  QRSYKG
Sbjct: 112 CNFAHSIEELRRPPPNWQEIVAAHEEEKAVMIEPPREEFQIPTVGSTTFSGEMMQRSYKG 171

Query: 165 RHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNV 224
           RHCKKFYTEEGCPYG++CTFLHDEQSKNRESVAISLGPGGYGGGG      G      N 
Sbjct: 172 RHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGVGGGASGGNG 231

Query: 225 -----------KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
                      KPSNWKTRICNKWE+TGYCPFGNKCHFAHG  E   YG
Sbjct: 232 GANAAGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYG 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516999|ref|XP_003628788.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355522810|gb|AET03264.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 180/297 (60%), Positives = 205/297 (69%), Gaps = 42/297 (14%)

Query: 1   MSYSRDSSENVVHIIV--GNGAPEHWIPNPNDSSVWATEDDYP--DDPPSISNSNCQSQT 56
           M Y+RD   NVV II   G GA + W     D + WATED+Y   +   +   +   S +
Sbjct: 1   MDYNRDG--NVVQIITTGGGGAADSW---STDQADWATEDEYRYWNGNDAGGETTPSSNS 55

Query: 57  RSNSEQPPNKKSRNGSQDVN--------SKSKAIGKMFFKTKLCCKFRNGTCPYITNCNF 108
           R+ SE PP+KKSR+ SQD          +++KAIGKMFFKTKLCCKFR GTCPYITNCNF
Sbjct: 56  RAGSE-PPSKKSRSNSQDGGGGGSGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNF 114

Query: 109 AHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ--RSYKGRH 166
           AHS+EELRRPP NWQEIVAAHEEER S  E PREEFQIP++ S+ F  E+   RSYKGRH
Sbjct: 115 AHSVEELRRPPENWQEIVAAHEEER-SVIEQPREEFQIPTVGSSTFVGESMNNRSYKGRH 173

Query: 167 CKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVS---- 222
           CKKFYTEEGCPYG++CTFLHDEQSKNRESVAISLGPGGYGGGG      G ++G      
Sbjct: 174 CKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGSVGSGVGSG 233

Query: 223 -----------------NVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
                            N+KPSNWKTRICNKWE+TGYCPFGNKCHFAHG  E   YG
Sbjct: 234 SGVVVVAAGAAAVGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYG 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846208|ref|XP_002890985.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297336827|gb|EFH67244.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/298 (57%), Positives = 206/298 (69%), Gaps = 45/298 (15%)

Query: 3   YSRDSSENVVHII-VGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSE 61
           + RDS  +VVH+I   N  P++W PN  DS+VWATEDDY +   +++  N    T  ++ 
Sbjct: 5   HRRDSGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDY-NRAWAVNPDN----TSGDNN 59

Query: 62  QPPNKKSRNG--------SQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIE 113
            PPNKK+R          +   ++++KAIGKMFFKTKLCCKFR GTCPYITNCNFAH++E
Sbjct: 60  GPPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVE 119

Query: 114 ELRRPPPNWQEIVAAHEEERA--------STNEIPREEFQIPSIVSTNFAVETQRSYKGR 165
           ELRRPPPNWQEIVAAHEEER+        +  E+PREEFQIPS+VS+    E+ RS+KGR
Sbjct: 120 ELRRPPPNWQEIVAAHEEERSGGMGTPTVAVVELPREEFQIPSLVSS--TAESGRSFKGR 177

Query: 166 HCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGG---------------- 209
           HCKKFYTEEGCPYGE+CTFLHDE S+NRESVAISLGPGGYG GG                
Sbjct: 178 HCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGGSGGGSGGGGGGS 237

Query: 210 -----AAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
                      G+  G++ +KPSNWKTRICNKWE+TGYCPFG KCHFAHG  E   +G
Sbjct: 238 SSNVVVLGGGGGSGSGINILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFG 295

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2028306	384	AT1G32360 [Arabidopsis thalian	0.711	0.5	0.616	4.5e-84
TAIR|locus:2090669	386	AT3G19360 [Arabidopsis thalian	0.429	0.300	0.425	2.7e-36
TAIR|locus:2062476	252	AT2G35430 [Arabidopsis thalian	0.596	0.638	0.440	7.9e-30
SGD|S000004126	285	TIS11 "mRNA-binding protein ex	0.140	0.133	0.45	5.2e-10
UNIPROTKB|G3V2D5	176	ZFP36L1 "Zinc finger protein 3	0.140	0.215	0.473	0.00083
TAIR|locus:2170169	240	AT5G06770 [Arabidopsis thalian	0.162	0.183	0.458	2.1e-09
CGD|CAL0004295	203	orf19.5334 [Candida albicans (	0.155	0.206	0.422	2.5e-09
UNIPROTKB|G3V2P5	207	ZFP36L1 "Zinc finger protein 3	0.237	0.309	0.389	3.7e-09
TAIR|locus:2099292	248	AT3G12130 [Arabidopsis thalian	0.133	0.145	0.513	5.8e-09
UNIPROTKB|A7MB98	338	ZFP36L1 "Uncharacterized prote	0.233	0.186	0.397	1.3e-08

TAIR|locus:2028306 AT1G32360 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 132/214 (61%), Positives = 157/214 (73%)

Query:     3 YSRDSSENVVHII-VGNGAPEHWIPNPNDSSVWATEDDY-------PDDPPSISNSNCQS 54
             + RDS  +VVH+I   N  P++W PN  DS+VWATEDDY       PD+    +N     
Sbjct:     4 HRRDSGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDYNRAWAMNPDNTSGDNNGPPNK 63

Query:    55 QTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEE 114
             +TR +    P+  S   +   ++++KAIGKMFFKTKLCCKFR GTCPYITNCNFAH++EE
Sbjct:    64 KTRGS----PSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEE 119

Query:   115 LRRPPPNWQEIVAAHEEERA--------STNEIPREEFQIPSIVSTNFAVETQRSYKGRH 166
             LRRPPPNWQEIVAAHEEER+        S  EIPREEFQIPS+VS+    E+ RS+KGRH
Sbjct:   120 LRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSST--AESGRSFKGRH 177

Query:   167 CKKFYTEEGCPYGENCTFLHDEQSKNRESVAISL 200
             CKKFYTEEGCPYGE+CTFLHDE S+NRESVAISL
Sbjct:   178 CKKFYTEEGCPYGESCTFLHDEASRNRESVAISL 211

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

TAIR|locus:2090669 AT3G19360 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 51/120 (42%), Positives = 72/120 (60%)

Query:    79 SKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIV----AAHEEERA 134
             +K    +F+KT++C KFR GTC     CNFAH IE+LR+PP NWQEIV    A  + ER 
Sbjct:    97 NKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERE 156

Query:   135 STNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRE 194
                E  RE   +  +V+ N+  + +   + + C+KF   E CPYG+ C F+H++ SK RE
Sbjct:   157 RERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRE 216

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2062476 AT2G35430 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 85/193 (44%), Positives = 107/193 (55%)

Query:     1 MSYSRDSSENVVHI-IVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSN 59
             MS+ RD   + VH+ I  +  PE+  PN  DSSVWATEDDY         S   +   S+
Sbjct:     1 MSHRRDYGSDAVHVRITHDPPPENCFPNSGDSSVWATEDDY---------SRVWA-INSD 50

Query:    60 SEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPY-ITNCNFAHSIEELRRP 118
               + P+KK+R+ S      S  IGK FFKTKLC KFR GTCPY  ++C+FAHS EELR P
Sbjct:    51 GAESPSKKTRSSS------SSEIGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLP 104

Query:   119 PP---NWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRS--YKGRHCKKFYTE 173
             PP   NWQE V       AS N   RE F + S+       +T +S  +K R C K+ T 
Sbjct:   105 PPPPPNWQETVT-----EASRN---RESFAV-SLGPRGNVAQTLKSPNWKTRICNKWQTT 155

Query:   174 EGCPYGENCTFLH 186
               CP+G +C F H
Sbjct:   156 GYCPFGSHCHFAH 168

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

SGD|S000004126 TIS11 "mRNA-binding protein expressed during iron starvation" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 103 (41.3 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query:   217 NNIGVSNVKPS--NWKTRICNKWELTGYCPFGNKCHFAHG 254
             + +G   VK S  N++T+ C  WE  GYCP+G +C F HG
Sbjct:   194 HGLGELKVKKSCKNFRTKPCVNWEKLGYCPYGRRCCFKHG 233

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 0.00083, P = 0.00083
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query:   220 GVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
             G   V  S +KT +C  +E  G C +G+KC FAHGI E
Sbjct:    84 GGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHE 121

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

TAIR|locus:2170169 AT5G06770 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query:   219 IGVSNVKP---SNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGI 263
             IG    KP   SN+KT+IC+++   G C +G++CHFAHG  E    GI
Sbjct:   193 IGGPEGKPHPGSNYKTKICDRYS-KGNCTYGDRCHFAHGESELRRSGI 239

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

CGD|CAL0004295 orf19.5334 [Candida albicans (taxid:5476)]

 Score = 105 (42.0 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query:    82 IGKMFFKTKLCCKF-RNGTCPYITNCNFAHSIEELRRP--PPNWQ 123
             I    +KT+LC  F + G CPY   C FAH   EL+    PP W+
Sbjct:   134 INTQLYKTELCASFMKTGVCPYANKCQFAHGENELKHVERPPKWR 178

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IEA

UNIPROTKB|G3V2P5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
 Identities = 30/77 (38%), Positives = 39/77 (50%)

Query:    45 PSISNSNCQSQTRSNSEQP----PNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NGT 99
             P++S+ + + + RS SE      P +K   G Q VNS         +KT+LC  F  NG 
Sbjct:    83 PALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQ-VNSSR-------YKTELCRPFEENGA 134

Query:   100 CPYITNCNFAHSIEELR 116
             C Y   C FAH I ELR
Sbjct:   135 CKYGDKCQFAHGIHELR 151

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2099292 AT3G12130 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query:   227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGI 263
             SN+KT+IC ++   G C FG++CHFAHG  E    GI
Sbjct:   212 SNFKTKICERFS-KGNCTFGDRCHFAHGEAELRKSGI 247

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|A7MB98 ZFP36L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 104 (41.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 31/78 (39%), Positives = 40/78 (51%)

Query:    45 PSISNSNCQSQTRSNSEQ-----PPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NG 98
             P++S+ + + + RS SE      PP K+   GS  VNS         +KT+LC  F  NG
Sbjct:    77 PALSSRDSRFRDRSFSEGGERLLPPQKQP--GSGQVNSSR-------YKTELCRPFEENG 127

Query:    99 TCPYITNCNFAHSIEELR 116
              C Y   C FAH I ELR
Sbjct:   128 ACKYGDKCQFAHGIHELR 145

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84UQ3	C3H56_ORYSJ	No assigned EC number	0.5444	0.9148	0.6730	yes	no
Q9LQM3	C3H12_ARATH	No assigned EC number	0.5671	0.9370	0.6588	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	9e-08
smart00356	27	smart00356, ZnF_C3H1, zinc finger	3e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	2e-04
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	3e-04
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	4e-04

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 46.8 bits (112), Expect = 9e-08
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 229 WKTRICNKWELTGYCPFGNKCHFAHG 254
           +KT +C  +  TG C +G++C FAHG
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHG 254
            +KT +C  ++  GYCP G++C FAH 
Sbjct: 1   KYKTELCKFFK-RGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 87  FKTKLCCKFRNGTCPYITNCNFAHS 111
           +KT+LC  F+ G CP    C FAH 
Sbjct: 2   YKTELCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 19/48 (39%), Positives = 24/48 (50%)

Query: 210 AAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
            A    G N   S  K  N++T  C  WE +GYCP+G +C F HG   
Sbjct: 253 FACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300

Length = 351

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 87  FKTKLCCKF-RNGTCPYITNCNFAHS 111
           +KT+LC  F R GTC Y   C FAH 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.56
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	99.36
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.27
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.25
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.1
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.08
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.92
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.58
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.48
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.36
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.17
smart00356	27	ZnF_C3H1 zinc finger.	98.15
KOG2333	614	consensus Uncharacterized conserved protein [Gener	98.04
smart00356	27	ZnF_C3H1 zinc finger.	98.01
KOG1040	325	consensus Polyadenylation factor I complex, subuni	97.88
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.79
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.73
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	97.7
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.29
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.02
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.92
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	96.4
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.95
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.83
KOG4791	667	consensus Uncharacterized conserved protein [Funct	95.66
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.53
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.5
COG5152	259	Uncharacterized conserved protein, contains RING a	95.13
KOG4791	667	consensus Uncharacterized conserved protein [Funct	94.22
COG5152	259	Uncharacterized conserved protein, contains RING a	93.75
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	91.67
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	90.56
KOG1763	343	consensus Uncharacterized conserved protein, conta	90.39
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	86.29
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	83.43
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	83.38
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	82.87

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.56  E-value=4.8e-15  Score=138.28  Aligned_cols=119  Identities=30%  Similarity=0.628  Sum_probs=91.9

Q ss_pred             ccccccc-cCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccccCc
Q 024271           90 KLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCK  168 (270)
Q Consensus        90 klC~~f~-~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~~C~  168 (270)
                      ..|..+. .+.|.++..|+|.|...+++..+..    .                          .........+|+.+|.
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~----~--------------------------~~~~~~p~~~kt~lc~  136 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR----R--------------------------SRGERKPERYKTPLCR  136 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCcc----c--------------------------cccccCcccccCCcce
Confidence            6899998 5999999999999988665543310    0                          0011224578999999


Q ss_pred             cccccCCCCC-CCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccccccCCCCC
Q 024271          169 KFYTEEGCPY-GENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGN  247 (270)
Q Consensus       169 ~f~~~G~C~~-G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~G~C~~G~  247 (270)
                      .|...|.|+| |++|+|+|...++....   +                    ......+..|||++|.+|..+|+|+||.
T Consensus       137 ~~~~~g~c~y~ge~crfah~~~e~r~~~---~--------------------~~~~~~~~~~kt~lC~~f~~tG~C~yG~  193 (332)
T KOG1677|consen  137 SFRKSGTCKYRGEQCRFAHGLEELRLPS---S--------------------ENQVGNPPKYKTKLCPKFQKTGLCKYGS  193 (332)
T ss_pred             eeecCccccccCchhhhcCCcccccccc---c--------------------chhhcCCCCCCCcCCCccccCCCCCCCC
Confidence            9999999999 99999999998764211   0                    0012467889999999999999999999


Q ss_pred             CCCCCCCccccccc
Q 024271          248 KCHFAHGIQEFCIY  261 (270)
Q Consensus       248 ~CrFaHg~~el~~~  261 (270)
                      +|+|+|+..+++..
T Consensus       194 rC~F~H~~~~~~~~  207 (332)
T KOG1677|consen  194 RCRFIHGEPEDRAS  207 (332)
T ss_pred             cCeecCCCcccccc
Confidence            99999999877654

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.36  E-value=4e-13  Score=129.81  Aligned_cols=103  Identities=29%  Similarity=0.619  Sum_probs=87.2

Q ss_pred             CccccccccccccccCCCCCCCCCCCCC-CcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCc
Q 024271           83 GKMFFKTKLCCKFRNGTCPYITNCNFAH-SIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRS  161 (270)
Q Consensus        83 ~~~~yKTklC~~f~~G~C~~Gd~C~FaH-~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~  161 (270)
                      .+--|||+.|..-   .|.-+..|.|+| +..+.|+.|..                                      ..
T Consensus       195 rMy~fKir~C~R~---~shDwteCPf~HpgEkARRRDPRk--------------------------------------yh  233 (528)
T KOG1595|consen  195 RMYSFKIRRCSRP---RSHDWTECPFAHPGEKARRRDPRK--------------------------------------YH  233 (528)
T ss_pred             EEEeeeecccCCc---cCCCcccCCccCCCcccccCCccc--------------------------------------cc
Confidence            3445899999864   999999999999 76667776642                                      24


Q ss_pred             cccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccccc
Q 024271          162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTG  241 (270)
Q Consensus       162 ~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~G  241 (270)
                      |..+.|+.|.. |.|..|+.|.|+|++-|..                               ++|..|||++|++   .|
T Consensus       234 Ys~tpCPefrk-G~C~rGD~CEyaHgvfEcw-------------------------------LHPa~YRT~~CkD---g~  278 (528)
T KOG1595|consen  234 YSSTPCPEFRK-GSCERGDSCEYAHGVFECW-------------------------------LHPARYRTRKCKD---GG  278 (528)
T ss_pred             ccCccCccccc-CCCCCCCccccccceehhh-------------------------------cCHHHhccccccC---CC
Confidence            67889999865 9999999999999998854                               7899999999997   48


Q ss_pred             cCCCCCCCCCCCCcccccccc
Q 024271          242 YCPFGNKCHFAHGIQEFCIYG  262 (270)
Q Consensus       242 ~C~~G~~CrFaHg~~el~~~~  262 (270)
                      +|++ .-|.|||..+|||...
T Consensus       279 ~C~R-rvCfFAH~~eqLR~l~  298 (528)
T KOG1595|consen  279 YCPR-RVCFFAHSPEQLRPLP  298 (528)
T ss_pred             CCcc-ceEeeecChHHhcccC
Confidence            9999 9999999999998765

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.27  E-value=3.1e-12  Score=119.37  Aligned_cols=82  Identities=39%  Similarity=0.755  Sum_probs=66.1

Q ss_pred             ccccCccccccccccccc-cCCCCC-CCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccc
Q 024271           79 SKAIGKMFFKTKLCCKFR-NGTCPY-ITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAV  156 (270)
Q Consensus        79 ~~~~~~~~yKTklC~~f~-~G~C~~-Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~  156 (270)
                      ........|||.+|..|. .|.|+| |++|+|+|+.+++|.+..  .  .                            ..
T Consensus       122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~--~--~----------------------------~~  169 (332)
T KOG1677|consen  122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS--E--N----------------------------QV  169 (332)
T ss_pred             ccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc--c--h----------------------------hh
Confidence            444556779999999999 699999 999999999999986520  0  0                            00


Q ss_pred             cccCccccccCccccccCCCCCCCCCCCCCcccccc
Q 024271          157 ETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKN  192 (270)
Q Consensus       157 ~~~~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~  192 (270)
                      ....+|||++|.+|..+|.|+||.+|+|+|...+..
T Consensus       170 ~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  170 GNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             cCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence            114679999999999999999999999999987553

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.25  E-value=5.7e-12  Score=114.37  Aligned_cols=116  Identities=26%  Similarity=0.534  Sum_probs=93.2

Q ss_pred             ccCcccccc--ccccccc-cCCCCC---CCCCCCC---CCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCcccc
Q 024271           81 AIGKMFFKT--KLCCKFR-NGTCPY---ITNCNFA---HSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVS  151 (270)
Q Consensus        81 ~~~~~~yKT--klC~~f~-~G~C~~---Gd~C~Fa---H~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s  151 (270)
                      ..++..|||  .||.-|. .|.|++   |+.|+|+   |+..+|...-                                
T Consensus       220 e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~--------------------------------  267 (351)
T COG5063         220 EQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK--------------------------------  267 (351)
T ss_pred             hccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccccc--------------------------------
Confidence            355677999  8999998 699999   9999999   9987765421                                


Q ss_pred             ccccccccCccccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccc
Q 024271          152 TNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKT  231 (270)
Q Consensus       152 ~~~~~~~~~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt  231 (270)
                            ...+|+|++|..|...|+|+||.+|.|.|+..++.....                           .....|+.
T Consensus       268 ------k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~---------------------------~~~~~y~~  314 (351)
T COG5063         268 ------KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYE---------------------------EASLGYLD  314 (351)
T ss_pred             ------cccccccCCccchhhcccCccccccccccCChhhccccc---------------------------cccccccc
Confidence                  124689999999999999999999999999877532111                           11234566


Q ss_pred             cccccccccccCCCCCCCCCCCCccccccc
Q 024271          232 RICNKWELTGYCPFGNKCHFAHGIQEFCIY  261 (270)
Q Consensus       232 ~lC~~f~~~G~C~~G~~CrFaHg~~el~~~  261 (270)
                      ..|+-++..|.|++|..|.|.|....|...
T Consensus       315 ~~crt~~~~g~~p~g~~~c~~~dkkn~~~s  344 (351)
T COG5063         315 GPCRTRAKGGAFPSGGAVCKSFDKKNLDFS  344 (351)
T ss_pred             cccccccccCccCCCCchhhccccchhhhh
Confidence            889999999999999999999998877653

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.10  E-value=9.1e-11  Score=106.63  Aligned_cols=78  Identities=33%  Similarity=0.743  Sum_probs=64.9

Q ss_pred             cCcccc--ccCccccccCCCCC---CCCCCCC---CcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccc
Q 024271          159 QRSYKG--RHCKKFYTEEGCPY---GENCTFL---HDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWK  230 (270)
Q Consensus       159 ~~~~Kt--~~C~~f~~~G~C~~---G~~C~f~---H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~k  230 (270)
                      ...|++  .+|..|...|.|++   |+.|.|+   |+..++..                             +.....|+
T Consensus       223 ~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~-----------------------------k~k~~~fr  273 (351)
T COG5063         223 KPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS-----------------------------KKKKQNFR  273 (351)
T ss_pred             chhhcCCHHHhhccCcCCCCccccccccccccccccccccccc-----------------------------cccccccc
Confidence            446788  99999999999999   9999999   98765422                             13446789


Q ss_pred             ccccccccccccCCCCCCCCCCCCccccccccccc
Q 024271          231 TRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQG  265 (270)
Q Consensus       231 t~lC~~f~~~G~C~~G~~CrFaHg~~el~~~~~~~  265 (270)
                      |++|..|+..|+|+||.+|.|+||++++.-+...+
T Consensus       274 TePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~  308 (351)
T COG5063         274 TEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEA  308 (351)
T ss_pred             cCCccchhhcccCccccccccccCChhhccccccc
Confidence            99999999999999999999999999877665444

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.08  E-value=8.1e-11  Score=109.53  Aligned_cols=113  Identities=23%  Similarity=0.499  Sum_probs=76.8

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccc
Q 024271           86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (270)
Q Consensus        86 ~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~  165 (270)
                      .+++.+|++|+.|.|+.||.|.|+|.. +|..                                              ..
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe~-~~~k----------------------------------------------~r  106 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHEY-DLTK----------------------------------------------MR  106 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhhh-hhcc----------------------------------------------cc
Confidence            678899999999999999999999987 4332                                              23


Q ss_pred             cCccccccCCCCCCCCCCCCCccccc-ccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccccccCC
Q 024271          166 HCKKFYTEEGCPYGENCTFLHDEQSK-NRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCP  244 (270)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e~-~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~G~C~  244 (270)
                      .|.+|...|.|..+..|.|.|...+- ..+...+       ..++.        ..+...........+|+.|. .|+|+
T Consensus       107 ec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~-------~~g~c--------~~g~~c~~~h~~~~~c~~y~-~gfC~  170 (325)
T KOG1040|consen  107 ECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWY-------KEGFC--------RGGPSCKKRHERKVLCPPYN-AGFCP  170 (325)
T ss_pred             cccccccccccccccCCcccCCChhhhhhccchh-------hhccC--------CCcchhhhhhhcccCCCchh-hhhcc
Confidence            47788889999999999999988421 1110000       00000        00111222223337899888 88999


Q ss_pred             CCCC-CCCCCCccccccc
Q 024271          245 FGNK-CHFAHGIQEFCIY  261 (270)
Q Consensus       245 ~G~~-CrFaHg~~el~~~  261 (270)
                      .|.. |-++|+...+...
T Consensus       171 ~g~q~c~~~hp~~~~~~~  188 (325)
T KOG1040|consen  171 KGPQRCDMLHPEFQQPPF  188 (325)
T ss_pred             CCCCcccccCCCCCCChh
Confidence            9988 9999988776654

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.92  E-value=1.2e-09  Score=106.04  Aligned_cols=153  Identities=23%  Similarity=0.449  Sum_probs=98.4

Q ss_pred             CCCccccCccccccccccccccCCCCC-CCCCCCCCCcCccCCCCCchHHHH--HHhh-hhhcccCC----CCccccccC
Q 024271           76 NSKSKAIGKMFFKTKLCCKFRNGTCPY-ITNCNFAHSIEELRRPPPNWQEIV--AAHE-EERASTNE----IPREEFQIP  147 (270)
Q Consensus        76 ~~~~~~~~~~~yKTklC~~f~~G~C~~-Gd~C~FaH~~~elR~pp~~~~~~~--~~~~-~e~~~~~~----~~r~~~~~p  147 (270)
                      +...+.++..+|||-+|..-..|.|.. +..|.|+|...++|.+...+.++.  .... .+......    .--.+.+.|
T Consensus       104 ~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~~~~~~~~~~~r~~~~~l~e~~~~~~~~~~e~~~~~~~~~~~y~~Dp~~p  183 (528)
T KOG1595|consen  104 GDTERTYHLRYYKTLPCVTDARGNCVKNVLHCAFAHGPNDLRPPVEDLLELQGGSGLPDDEPEVESKLDVTEYPEDPSWP  183 (528)
T ss_pred             CCcceeEeccccccccCccccCCCcccCcccccccCCccccccHHHHHHhcccccCccCCCcccccccccccccCCCCcc
Confidence            444577888899999999666799955 467999999999998765443332  0000 00000000    000111222


Q ss_pred             ccc-cccccccccCccccccCccccccCCCCCCCCCCCCC-cccccccccccccCCCCCCCCCCCcccccCCCCCccCCC
Q 024271          148 SIV-STNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLH-DEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVK  225 (270)
Q Consensus       148 ~~~-s~~~~~~~~~~~Kt~~C~~f~~~G~C~~G~~C~f~H-~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~  225 (270)
                      .|. ..+.+....-.||++.|..    +.|.-+..|+|+| ++...+|.                             .+
T Consensus       184 di~~~ys~DeFrMy~fKir~C~R----~~shDwteCPf~HpgEkARRRD-----------------------------PR  230 (528)
T KOG1595|consen  184 DINGIYSSDEFRMYSFKIRRCSR----PRSHDWTECPFAHPGEKARRRD-----------------------------PR  230 (528)
T ss_pred             cccccccccceEEEeeeecccCC----ccCCCcccCCccCCCcccccCC-----------------------------cc
Confidence            221 1111122245799999954    5899999999999 66655543                             23


Q ss_pred             CCcccccccccccccccCCCCCCCCCCCCcccccccc
Q 024271          226 PSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG  262 (270)
Q Consensus       226 ~~~~kt~lC~~f~~~G~C~~G~~CrFaHg~~el~~~~  262 (270)
                      -..|..+.|+.|. +|.|+.||.|.|+||.-|..-++
T Consensus       231 kyhYs~tpCPefr-kG~C~rGD~CEyaHgvfEcwLHP  266 (528)
T KOG1595|consen  231 KYHYSSTPCPEFR-KGSCERGDSCEYAHGVFECWLHP  266 (528)
T ss_pred             cccccCccCcccc-cCCCCCCCccccccceehhhcCH
Confidence            3456678999998 69999999999999998865543

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.58  E-value=8.8e-09  Score=61.81  Aligned_cols=27  Identities=56%  Similarity=1.232  Sum_probs=21.8

Q ss_pred             ccccccccccccccCCCCCCCCCCCCc
Q 024271          229 WKTRICNKWELTGYCPFGNKCHFAHGI  255 (270)
Q Consensus       229 ~kt~lC~~f~~~G~C~~G~~CrFaHg~  255 (270)
                      +|+++|++|+.+|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            468999999999999999999999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.48  E-value=2.9e-08  Score=59.51  Aligned_cols=25  Identities=56%  Similarity=1.156  Sum_probs=20.5

Q ss_pred             ccccccccccc-CCCCCCCCCCCCCC
Q 024271           87 FKTKLCCKFRN-GTCPYITNCNFAHS  111 (270)
Q Consensus        87 yKTklC~~f~~-G~C~~Gd~C~FaH~  111 (270)
                      |||++|.+|+. |.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            68999999995 99999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.36  E-value=1.1e-06  Score=80.59  Aligned_cols=90  Identities=24%  Similarity=0.658  Sum_probs=70.0

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccc
Q 024271           86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (270)
Q Consensus        86 ~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~  165 (270)
                      .+...+|++|..|.|+.+..|.|+|+..-++.                                             .+-
T Consensus       101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s---------------------------------------------~~~  135 (285)
T COG5084         101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSS---------------------------------------------QGP  135 (285)
T ss_pred             ccCCcccchhccccCcCCCccccccCCCcccc---------------------------------------------cCC
Confidence            56678999999999999999999998732221                                             124


Q ss_pred             cCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccc--cccC
Q 024271          166 HCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL--TGYC  243 (270)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~--~G~C  243 (270)
                      .|+.|...|.|..|..|.|.|......                                      ...|.+|..  .+.|
T Consensus       136 ~c~~Fs~~G~cs~g~~c~~~h~dp~~~--------------------------------------~~~~~~~~~~~~~f~  177 (285)
T COG5084         136 PCRSFSLKGSCSSGPSCGYSHIDPDSF--------------------------------------AGNCDQYSGATYGFC  177 (285)
T ss_pred             CcccccccceeccCCCCCccccCcccc--------------------------------------cccccccCccccccc
Confidence            588888899999999999999873211                                      134655543  7899


Q ss_pred             CCCCCCCCCCCcccc
Q 024271          244 PFGNKCHFAHGIQEF  258 (270)
Q Consensus       244 ~~G~~CrFaHg~~el  258 (270)
                      ++|..|+|.|+...+
T Consensus       178 p~g~~c~~~H~~~~~  192 (285)
T COG5084         178 PLGASCKFSHTLKRV  192 (285)
T ss_pred             CCCCccccccccccc
Confidence            999999999998744

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.17  E-value=9.9e-07  Score=77.93  Aligned_cols=21  Identities=33%  Similarity=0.811  Sum_probs=13.8

Q ss_pred             cccccc-cCCCCCCCCCCCCCC
Q 024271           91 LCCKFR-NGTCPYITNCNFAHS  111 (270)
Q Consensus        91 lC~~f~-~G~C~~Gd~C~FaH~  111 (270)
                      .|++|. +|.|-.|..|+|.|.
T Consensus       208 ycryynangicgkgaacrfvhe  229 (377)
T KOG1492|consen  208 YCRYYNANGICGKGAACRFVHE  229 (377)
T ss_pred             EEEEecCCCcccCCceeeeecc
Confidence            466665 566766767777664

>smart00356 ZnF_C3H1 zinc finger

Probab=98.15  E-value=1.3e-06  Score=51.62  Aligned_cols=25  Identities=52%  Similarity=1.157  Sum_probs=23.5

Q ss_pred             cccccccccccCCCCCCCCCCCCCC
Q 024271           87 FKTKLCCKFRNGTCPYITNCNFAHS  111 (270)
Q Consensus        87 yKTklC~~f~~G~C~~Gd~C~FaH~  111 (270)
                      +|+.+|.+|.+|.|.+|++|+|+|+
T Consensus         2 ~k~~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCccCCCCCCCCCcCCCCc
Confidence            6889999999999999999999996

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=98.04  E-value=1.9e-06  Score=83.29  Aligned_cols=63  Identities=30%  Similarity=0.738  Sum_probs=49.4

Q ss_pred             ccccCcccccc--CCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccccc
Q 024271          163 KGRHCKKFYTE--EGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (270)
Q Consensus       163 Kt~~C~~f~~~--G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~  240 (270)
                      +..||+.....  ..|.||++|+|.|+...+...                              ++.+.. .-|+.|.+.
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLat------------------------------K~~Dig-~~Cp~f~s~  123 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLAT------------------------------KAPDIG-PSCPVFESL  123 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhc------------------------------cCcccC-Cccceeecc
Confidence            46899887666  579999999999999876532                              223333 469999999


Q ss_pred             ccCCCCCCCCCCCCcc
Q 024271          241 GYCPFGNKCHFAHGIQ  256 (270)
Q Consensus       241 G~C~~G~~CrFaHg~~  256 (270)
                      |+|+||-+|||+-++-
T Consensus       124 G~Cp~G~~CRFl~aHl  139 (614)
T KOG2333|consen  124 GFCPYGFKCRFLGAHL  139 (614)
T ss_pred             ccCCccceeehhhccc
Confidence            9999999999986653

>smart00356 ZnF_C3H1 zinc finger

Probab=98.01  E-value=3.6e-06  Score=49.75  Aligned_cols=26  Identities=46%  Similarity=1.307  Sum_probs=22.8

Q ss_pred             ccccccccccccccCCCCCCCCCCCCc
Q 024271          229 WKTRICNKWELTGYCPFGNKCHFAHGI  255 (270)
Q Consensus       229 ~kt~lC~~f~~~G~C~~G~~CrFaHg~  255 (270)
                      +|+.+|++| .+|.|++|++|+|+|+.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            456799999 69999999999999973

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=97.88  E-value=1.2e-05  Score=75.24  Aligned_cols=25  Identities=28%  Similarity=0.577  Sum_probs=20.9

Q ss_pred             ccccccccc-cCCCCCCCCCCCCCCc
Q 024271           88 KTKLCCKFR-NGTCPYITNCNFAHSI  112 (270)
Q Consensus        88 KTklC~~f~-~G~C~~Gd~C~FaH~~  112 (270)
                      |.+.|.+|. .|.|..++.|.|.|+.
T Consensus       104 k~rec~ff~~~g~c~~~~~c~y~h~d  129 (325)
T KOG1040|consen  104 KMRECKFFSLFGECTNGKDCPYLHGD  129 (325)
T ss_pred             ccccccccccccccccccCCcccCCC
Confidence            334688887 6999999999999976

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.79  E-value=6.5e-06  Score=79.73  Aligned_cols=58  Identities=38%  Similarity=0.813  Sum_probs=45.3

Q ss_pred             ccccccccccC---CCCCCCCCCCCCCcCc-cCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccc
Q 024271           88 KTKLCCKFRNG---TCPYITNCNFAHSIEE-LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYK  163 (270)
Q Consensus        88 KTklC~~f~~G---~C~~Gd~C~FaH~~~e-lR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~K  163 (270)
                      +..||.....|   .|.||++|+|.|+++- |...++                           .|+             
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~---------------------------Dig-------------  114 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAP---------------------------DIG-------------  114 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCc---------------------------ccC-------------
Confidence            56899999865   7999999999999854 333221                           221             


Q ss_pred             cccCccccccCCCCCCCCCCCCC
Q 024271          164 GRHCKKFYTEEGCPYGENCTFLH  186 (270)
Q Consensus       164 t~~C~~f~~~G~C~~G~~C~f~H  186 (270)
                       ..|+.|...|.|+||.+|||+-
T Consensus       115 -~~Cp~f~s~G~Cp~G~~CRFl~  136 (614)
T KOG2333|consen  115 -PSCPVFESLGFCPYGFKCRFLG  136 (614)
T ss_pred             -CccceeeccccCCccceeehhh
Confidence             4599999999999999999953

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.73  E-value=1.2e-05  Score=74.38  Aligned_cols=59  Identities=27%  Similarity=0.526  Sum_probs=44.2

Q ss_pred             cccccccccCCCCCCCC-CCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccccC
Q 024271           89 TKLCCKFRNGTCPYITN-CNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHC  167 (270)
Q Consensus        89 TklC~~f~~G~C~~Gd~-C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~~C  167 (270)
                      ..+|+.|+.|.|.+||. |+|+|...-+-                                          ..+-+...|
T Consensus        37 ~eVCReF~rn~C~R~d~~CkfaHP~~~~~------------------------------------------V~~g~v~aC   74 (331)
T KOG2494|consen   37 LEVCREFLRNTCSRGDRECKFAHPPKNCQ------------------------------------------VSNGRVIAC   74 (331)
T ss_pred             HHHHHHHHhccccCCCccccccCCCCCCC------------------------------------------ccCCeEEEE
Confidence            37999999999999998 99999542111                                          122345679


Q ss_pred             ccccccCCCCCCCCCCCCCccccc
Q 024271          168 KKFYTEEGCPYGENCTFLHDEQSK  191 (270)
Q Consensus       168 ~~f~~~G~C~~G~~C~f~H~~~e~  191 (270)
                      ..|+ +|.|. .++|+|+|....+
T Consensus        75 ~Ds~-kgrCs-R~nCkylHpp~hl   96 (331)
T KOG2494|consen   75 FDSQ-KGRCS-RENCKYLHPPQHL   96 (331)
T ss_pred             eccc-cCccC-cccceecCCChhh
Confidence            6664 58999 4779999988765

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=97.70  E-value=1.7e-05  Score=70.26  Aligned_cols=25  Identities=32%  Similarity=0.800  Sum_probs=20.7

Q ss_pred             cccccccccccCCCCCCCCCCCCcc
Q 024271          232 RICNKWELTGYCPFGNKCHFAHGIQ  256 (270)
Q Consensus       232 ~lC~~f~~~G~C~~G~~CrFaHg~~  256 (270)
                      .+|-.|...|+|..|..|.-.|-.+
T Consensus       289 picfefakygfcelgtscknqhilq  313 (377)
T KOG1492|consen  289 PICFEFAKYGFCELGTSCKNQHILQ  313 (377)
T ss_pred             ceeeeehhcceeccccccccceeee
Confidence            5788888899999999999888543

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.29  E-value=0.0001  Score=68.23  Aligned_cols=62  Identities=24%  Similarity=0.537  Sum_probs=46.9

Q ss_pred             cccccCccccccCCCCCCCC-CCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccccc
Q 024271          162 YKGRHCKKFYTEEGCPYGEN-CTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (270)
Q Consensus       162 ~Kt~~C~~f~~~G~C~~G~~-C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~  240 (270)
                      ..-.+|+.|+. +.|.+|++ |+|+|.....                                 ..++-+-.-|-+|. +
T Consensus        35 l~~eVCReF~r-n~C~R~d~~CkfaHP~~~~---------------------------------~V~~g~v~aC~Ds~-k   79 (331)
T KOG2494|consen   35 LTLEVCREFLR-NTCSRGDRECKFAHPPKNC---------------------------------QVSNGRVIACFDSQ-K   79 (331)
T ss_pred             hHHHHHHHHHh-ccccCCCccccccCCCCCC---------------------------------CccCCeEEEEeccc-c
Confidence            34578999864 89999999 9999987632                                 11222335799998 8


Q ss_pred             ccCCCCCCCCCCCCccccc
Q 024271          241 GYCPFGNKCHFAHGIQEFC  259 (270)
Q Consensus       241 G~C~~G~~CrFaHg~~el~  259 (270)
                      |.|.+- +|+|+|+..+++
T Consensus        80 grCsR~-nCkylHpp~hlk   97 (331)
T KOG2494|consen   80 GRCSRE-NCKYLHPPQHLK   97 (331)
T ss_pred             CccCcc-cceecCCChhhh
Confidence            999986 599999987654

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.02  E-value=0.00018  Score=65.73  Aligned_cols=32  Identities=31%  Similarity=0.644  Sum_probs=27.4

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCcCccC
Q 024271           85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEELR  116 (270)
Q Consensus        85 ~~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR  116 (270)
                      .--|+.+|.+|.+|+|..|+.|.|+|+....|
T Consensus        88 vDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~  119 (343)
T KOG1763|consen   88 VDPKSVVCAFFKQGTCTKGDKCKFSHDLAVER  119 (343)
T ss_pred             CCchHHHHHHHhccCCCCCCcccccchHHHhh
Confidence            44588999999999999999999999885433

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.92  E-value=0.00016  Score=64.34  Aligned_cols=85  Identities=33%  Similarity=0.589  Sum_probs=53.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCcCccCCC--CCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCcc
Q 024271           85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRP--PPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSY  162 (270)
Q Consensus        85 ~~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR~p--p~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~  162 (270)
                      .--||.+|..|.++.|..|+.|.|+|+.++.|..  +.-|+++-  ..++....  ..|     |-            ..
T Consensus        81 vdpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvR--d~~ed~pl--~kr-----P~------------in  139 (299)
T COG5252          81 VDPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVR--DKEEDVPL--GKR-----PW------------IN  139 (299)
T ss_pred             cCchhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhh--hhhccCCc--ccC-----CC------------CC
Confidence            3458899999999999999999999998886653  33333321  11111000  000     11            12


Q ss_pred             ccccCccccc---cC------CCCCC-CCCCCCCcccc
Q 024271          163 KGRHCKKFYT---EE------GCPYG-ENCTFLHDEQS  190 (270)
Q Consensus       163 Kt~~C~~f~~---~G------~C~~G-~~C~f~H~~~e  190 (270)
                      .-.+|.+|..   .|      .|+.| .+|.|.|...+
T Consensus       140 td~VCkffieA~e~GkYgw~W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         140 TDRVCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             hhHHHHHHHHHHhcCCccceeeCCCCCceeeeeeccCc
Confidence            3367866643   22      49988 78999998766

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=96.40  E-value=0.0058  Score=56.27  Aligned_cols=56  Identities=30%  Similarity=0.624  Sum_probs=45.6

Q ss_pred             ccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccccccc
Q 024271          163 KGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGY  242 (270)
Q Consensus       163 Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~G~  242 (270)
                      ..++|+.| ..|.|+.+..|.|+|......                                  .  .+..|++|...|.
T Consensus       103 s~V~c~~~-~~g~c~s~~~c~~lh~~d~~~----------------------------------s--~~~~c~~Fs~~G~  145 (285)
T COG5084         103 SSVVCKFF-LRGLCKSGFSCEFLHEYDLRS----------------------------------S--QGPPCRSFSLKGS  145 (285)
T ss_pred             CCcccchh-ccccCcCCCccccccCCCccc----------------------------------c--cCCCcccccccce
Confidence            45789666 569999999999999886421                                  1  1357999988999


Q ss_pred             CCCCCCCCCCCCc
Q 024271          243 CPFGNKCHFAHGI  255 (270)
Q Consensus       243 C~~G~~CrFaHg~  255 (270)
                      |..|..|.|.|.+
T Consensus       146 cs~g~~c~~~h~d  158 (285)
T COG5084         146 CSSGPSCGYSHID  158 (285)
T ss_pred             eccCCCCCccccC
Confidence            9999999999997

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.95  E-value=0.0049  Score=33.79  Aligned_cols=19  Identities=32%  Similarity=0.728  Sum_probs=16.3

Q ss_pred             ccccccccccCCCCCCCCCCCC
Q 024271          233 ICNKWELTGYCPFGNKCHFAHG  254 (270)
Q Consensus       233 lC~~f~~~G~C~~G~~CrFaHg  254 (270)
                      +|++|.   .|++|++|.|+|+
T Consensus         1 ~Ck~~~---~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP---NCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC---CCCCCCcCccCCc
Confidence            488776   4999999999995

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.83  E-value=0.0036  Score=59.77  Aligned_cols=39  Identities=33%  Similarity=0.865  Sum_probs=28.9

Q ss_pred             ccccccccccCCCCCCCCCCCCCCc----CccCC-CCCchHHHH
Q 024271           88 KTKLCCKFRNGTCPYITNCNFAHSI----EELRR-PPPNWQEIV  126 (270)
Q Consensus        88 KTklC~~f~~G~C~~Gd~C~FaH~~----~elR~-pp~~~~~~~  126 (270)
                      -.++|.+|+.|.|+|+++|+|+|+.    +.||. -+++|..|+
T Consensus       139 sMkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~yq~pD~s~L~  182 (486)
T KOG2185|consen  139 SMKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNYQQPDWSQLM  182 (486)
T ss_pred             hhccchHhhccccccCcccccccCcccchhhcccCCCccHHHHh
Confidence            3468999999999999999999987    33432 244565554

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.0047  Score=60.08  Aligned_cols=80  Identities=25%  Similarity=0.436  Sum_probs=58.8

Q ss_pred             ccccccccCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccccCcc
Q 024271           90 KLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKK  169 (270)
Q Consensus        90 klC~~f~~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~~C~~  169 (270)
                      ..|.+|....|++++.|.|.|...-|.                                              -...|..
T Consensus         4 ~dcyff~ys~cKk~d~c~~rh~E~al~----------------------------------------------n~t~C~~   37 (667)
T KOG4791|consen    4 EDCYFFFYSTCKKGDSCPFRHCEAALG----------------------------------------------NETVCTL   37 (667)
T ss_pred             ccchhhhhhhhhccCcCcchhhHHHhc----------------------------------------------Ccchhhh
Confidence            458888889999999999999652211                                              1246999


Q ss_pred             ccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccccccc-CCCCCC
Q 024271          170 FYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGY-CPFGNK  248 (270)
Q Consensus       170 f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~G~-C~~G~~  248 (270)
                      |+..-.|+.  .|+|-|..-.+.+                                    ...+|.+|. ++. |.. ++
T Consensus        38 w~~~~~C~k--~C~YRHSe~~~kr------------------------------------~e~~CYwe~-~p~gC~k-~~   77 (667)
T KOG4791|consen   38 WQEGRCCRK--VCRYRHSEIDKKR------------------------------------SEIPCYWEN-QPTGCQK-LN   77 (667)
T ss_pred             hhhcCcccc--cccchhhHHhhhc------------------------------------Ccccceeec-CCCccCC-Cc
Confidence            988877875  9999998755321                                    136897666 665 875 69


Q ss_pred             CCCCCCc
Q 024271          249 CHFAHGI  255 (270)
Q Consensus       249 CrFaHg~  255 (270)
                      |-|.|..
T Consensus        78 CgfRH~~   84 (667)
T KOG4791|consen   78 CGFRHNR   84 (667)
T ss_pred             cccccCC
Confidence            9999943

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.53  E-value=0.0059  Score=58.33  Aligned_cols=37  Identities=27%  Similarity=0.738  Sum_probs=30.2

Q ss_pred             cccccccccccccCCCCCCCCCCCCcc----ccccccccccc
Q 024271          230 KTRICNKWELTGYCPFGNKCHFAHGIQ----EFCIYGIQGFH  267 (270)
Q Consensus       230 kt~lC~~f~~~G~C~~G~~CrFaHg~~----el~~~~~~~~~  267 (270)
                      .+.+|+||+ .|.|+|+.+|||.||..    +|+++..-.|+
T Consensus       139 sMkpC~ffL-eg~CRF~enCRfSHG~~V~lsslr~yq~pD~s  179 (486)
T KOG2185|consen  139 SMKPCKFFL-EGRCRFGENCRFSHGLDVPLSSLRNYQQPDWS  179 (486)
T ss_pred             hhccchHhh-ccccccCcccccccCcccchhhcccCCCccHH
Confidence            357999999 89999999999999964    57777665554

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.50  E-value=0.0092  Score=32.70  Aligned_cols=19  Identities=37%  Similarity=0.621  Sum_probs=15.5

Q ss_pred             cccccccCCCCCCCCCCCCCC
Q 024271           91 LCCKFRNGTCPYITNCNFAHS  111 (270)
Q Consensus        91 lC~~f~~G~C~~Gd~C~FaH~  111 (270)
                      +|+++..  |+++++|.|+|.
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            4776654  999999999993

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.13  E-value=0.0072  Score=52.75  Aligned_cols=30  Identities=30%  Similarity=0.929  Sum_probs=26.0

Q ss_pred             cccccccccccccccCCCCCCCCCCCCccc
Q 024271          228 NWKTRICNKWELTGYCPFGNKCHFAHGIQE  257 (270)
Q Consensus       228 ~~kt~lC~~f~~~G~C~~G~~CrFaHg~~e  257 (270)
                      .+...+|+.|..+|||-||+.|.|.|..+.
T Consensus       138 D~qpdVCKdyk~TGYCGYGDsCKflH~R~D  167 (259)
T COG5152         138 DTQPDVCKDYKETGYCGYGDSCKFLHDRSD  167 (259)
T ss_pred             ecCcccccchhhcccccCCchhhhhhhhhh
Confidence            344578999999999999999999998764

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.22  E-value=0.042  Score=53.67  Aligned_cols=106  Identities=15%  Similarity=0.207  Sum_probs=60.4

Q ss_pred             ccccccccCC-CCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccccCc
Q 024271           90 KLCCKFRNGT-CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCK  168 (270)
Q Consensus        90 klC~~f~~G~-C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~~C~  168 (270)
                      ..|.+|+.+. |+.  .|.|-|+.-.+.+                                             ...+| 
T Consensus        33 t~C~~w~~~~~C~k--~C~YRHSe~~~kr---------------------------------------------~e~~C-   64 (667)
T KOG4791|consen   33 TVCTLWQEGRCCRK--VCRYRHSEIDKKR---------------------------------------------SEIPC-   64 (667)
T ss_pred             chhhhhhhcCcccc--cccchhhHHhhhc---------------------------------------------Ccccc-
Confidence            5799999765 554  8999997633221                                             22569 


Q ss_pred             cccccCC-CCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCC-CcccccccccccccccCCCC
Q 024271          169 KFYTEEG-CPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKP-SNWKTRICNKWELTGYCPFG  246 (270)
Q Consensus       169 ~f~~~G~-C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~-~~~kt~lC~~f~~~G~C~~G  246 (270)
                      +|...+. |. .++|-|-|....+........+.|.   ....+..   .++    .++ ..-...+|-+|. .++|..+
T Consensus        65 Ywe~~p~gC~-k~~CgfRH~~pPLkg~l~~~p~~pe---~ev~~~~---~SA----q~~sV~~~p~P~l~~~-K~~e~~~  132 (667)
T KOG4791|consen   65 YWENQPTGCQ-KLNCGFRHNRPPLKGVLPTVPESPE---EEVKASQ---LSA----QQNSVQSNPSPQLRSV-KKVESSE  132 (667)
T ss_pred             eeecCCCccC-CCccccccCCCchhhhccCCCCCcc---ccccccc---ccC----CCcccccCCchHHHHh-hhhhhhc
Confidence            5555554 88 6999999976544211000000000   0000000   000    010 111125788777 8999999


Q ss_pred             CCCCCCCCc
Q 024271          247 NKCHFAHGI  255 (270)
Q Consensus       247 ~~CrFaHg~  255 (270)
                      +.|-|+|..
T Consensus       133 D~~s~Lh~P  141 (667)
T KOG4791|consen  133 DVPSPLHPP  141 (667)
T ss_pred             cccccCCCC
Confidence            999999976

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.75  E-value=0.025  Score=49.43  Aligned_cols=33  Identities=21%  Similarity=0.663  Sum_probs=27.2

Q ss_pred             cccccccccccc-cCCCCCCCCCCCCCCcCccCC
Q 024271           85 MFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRR  117 (270)
Q Consensus        85 ~~yKTklC~~f~-~G~C~~Gd~C~FaH~~~elR~  117 (270)
                      +-|-..+|..|. +|.|-|||.|+|+|.-++...
T Consensus       137 iD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~Kt  170 (259)
T COG5152         137 IDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFKT  170 (259)
T ss_pred             eecCcccccchhhcccccCCchhhhhhhhhhhhc
Confidence            445556899998 799999999999999876543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.67  E-value=0.13  Score=48.69  Aligned_cols=25  Identities=28%  Similarity=0.846  Sum_probs=21.5

Q ss_pred             ccCccccccCCCCCCCCCCCCCcccc
Q 024271          165 RHCKKFYTEEGCPYGENCTFLHDEQS  190 (270)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~e  190 (270)
                      .+| +|+..|.|+||+.|+|.|+...
T Consensus         9 tic-~~~~~g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TIC-KYYQKGNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhh-hhcccccccccceeeeeccCch
Confidence            679 5556799999999999999873

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.56  E-value=0.077  Score=48.97  Aligned_cols=30  Identities=33%  Similarity=1.056  Sum_probs=25.8

Q ss_pred             ccccccccccccccCCCCCCCCCCCCcccc
Q 024271          229 WKTRICNKWELTGYCPFGNKCHFAHGIQEF  258 (270)
Q Consensus       229 ~kt~lC~~f~~~G~C~~G~~CrFaHg~~el  258 (270)
                      |...+|+.|..+|+|-||+.|.|.|.....
T Consensus       184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            444799999999999999999999987643

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=90.39  E-value=0.081  Score=48.78  Aligned_cols=35  Identities=26%  Similarity=0.530  Sum_probs=29.6

Q ss_pred             CcccccccccccccccCCCCCCCCCCCCcccccccc
Q 024271          227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG  262 (270)
Q Consensus       227 ~~~kt~lC~~f~~~G~C~~G~~CrFaHg~~el~~~~  262 (270)
                      ...|+.+|-+|. .|.|..|+.|.|+|+...-+...
T Consensus        88 vDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~e  122 (343)
T KOG1763|consen   88 VDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKE  122 (343)
T ss_pred             CCchHHHHHHHh-ccCCCCCCcccccchHHHhhhcc
Confidence            456789999888 89999999999999988766543

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.29  E-value=0.23  Score=45.86  Aligned_cols=31  Identities=35%  Similarity=0.850  Sum_probs=27.7

Q ss_pred             ccccccCccccccCCCCCCCCCCCCCccccc
Q 024271          161 SYKGRHCKKFYTEEGCPYGENCTFLHDEQSK  191 (270)
Q Consensus       161 ~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~  191 (270)
                      -|...+|+.|..+|+|-||+.|.|+|+...+
T Consensus       183 d~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             ecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            4677899999999999999999999998754

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.43  E-value=0.43  Score=45.33  Aligned_cols=24  Identities=25%  Similarity=0.804  Sum_probs=22.6

Q ss_pred             ccccccccCCCCCCCCCCCCCCcC
Q 024271           90 KLCCKFRNGTCPYITNCNFAHSIE  113 (270)
Q Consensus        90 klC~~f~~G~C~~Gd~C~FaH~~~  113 (270)
                      .+|++|+.|.|.||+.|+|.|...
T Consensus         9 tic~~~~~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQKGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcccccccccceeeeeccCc
Confidence            689999999999999999999875

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=83.38  E-value=0.72  Score=26.53  Aligned_cols=20  Identities=35%  Similarity=0.742  Sum_probs=16.3

Q ss_pred             ccccccccC-CCCCCCCCCCCC
Q 024271           90 KLCCKFRNG-TCPYITNCNFAH  110 (270)
Q Consensus        90 klC~~f~~G-~C~~Gd~C~FaH  110 (270)
                      .||.+.++| .| .-+.|.|.|
T Consensus         1 ~lC~yEl~Gg~C-nd~~C~~QH   21 (23)
T PF10650_consen    1 PLCPYELTGGVC-NDPDCEFQH   21 (23)
T ss_pred             CCCccccCCCee-CCCCCCccc
Confidence            379998876 99 457899999

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=82.87  E-value=0.34  Score=43.55  Aligned_cols=35  Identities=31%  Similarity=0.527  Sum_probs=29.7

Q ss_pred             CcccccccccccccccCCCCCCCCCCCCcccccccc
Q 024271          227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG  262 (270)
Q Consensus       227 ~~~kt~lC~~f~~~G~C~~G~~CrFaHg~~el~~~~  262 (270)
                      ...|+.+|-.|. .+.|..|+.|.|+|+.+|.+...
T Consensus        81 vdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~e  115 (299)
T COG5252          81 VDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTE  115 (299)
T ss_pred             cCchhHHHHHhc-cCccccCchhhhhcchHHHhhhc
Confidence            456789999998 89999999999999988876653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
1m9o_A	77	Nmr Structure Of The First Zinc Binding Domain Of N		6e-04

>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 37/102 (36%)
Query: 156 VETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLXXXXXXXXXXXXXXX 215
           + T   YK   C+ +     C YG  C F H                             
Sbjct: 4   MTTSSRYKTELCRTYSESGRCRYGAKCQFAH----------------------------- 34
Query: 216 XNNIGVSNVKPSN----WKTRICNKWELTGYCPFGNKCHFAH 253
               G+  ++ +N    +KT +C+K++L G CP+G++CHF H
Sbjct: 35  ----GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIH 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	8e-16
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-13
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	8e-10
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-04
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	4e-05

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 69.6 bits (170), Expect = 8e-16
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 29/100 (29%)

Query: 158 TQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGN 217
           T   YK   C+ +     C YG  C F H      + +                      
Sbjct: 6   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN---------------------- 43

Query: 218 NIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
                  +   +KT +C+K++L G CP+G++CHF H   E
Sbjct: 44  -------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 61.9 bits (150), Expect = 6e-13
 Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 39/112 (34%)

Query: 79  SKAIGKMFFKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTN 137
           S       +KT+LC  +  +G C Y   C FAH + ELR+   + +              
Sbjct: 2   SHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPK-------------- 47

Query: 138 EIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
                                   YK   C KF  +  CPYG  C F+H+  
Sbjct: 48  ------------------------YKTELCHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 53.4 bits (128), Expect = 8e-10
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 220 GVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQGFH 267
           G      S +KT +C  +  +G C +G KC FAHG+ E         +
Sbjct: 1   GSHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKY 48

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 74  DVNSKSKAIGKMFFKTKLCCKF-RNGTCPYITNCNFAHSIEE 114
            +    +A     +KT+LC KF   G CPY + C+F H+  E
Sbjct: 35  GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 90  KLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQE 124
            +C ++ NGTCP   +C FAH   EL      W+E
Sbjct: 21  SICDRYMNGTCPEGNSCKFAHGNAELHE----WEE 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.65
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.65
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.35
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.19
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.12
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.09
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.06
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.02
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.95
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.93
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.84
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.82
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.78
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.59
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.54
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.53
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.42
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.29
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.85
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.54
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.44
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	94.42
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	93.8
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	90.39
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	90.25
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	88.6

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.65  E-value=5.1e-17  Score=119.85  Aligned_cols=70  Identities=37%  Similarity=0.857  Sum_probs=32.2

Q ss_pred             Cccccccccccccc-cCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCc
Q 024271           83 GKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRS  161 (270)
Q Consensus        83 ~~~~yKTklC~~f~-~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~  161 (270)
                      +..+|||+||++|+ .|.|++|++|+|+|+..+++..+.                                      .+.
T Consensus         6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------------------------------------~~~   47 (77)
T 1m9o_A            6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------------------------------------HPK   47 (77)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------------
T ss_pred             CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------------------------------------ccc
Confidence            45689999999997 899999999999999988775321                                      124


Q ss_pred             cccccCccccccCCCCCCCCCCCCCcccc
Q 024271          162 YKGRHCKKFYTEEGCPYGENCTFLHDEQS  190 (270)
Q Consensus       162 ~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e  190 (270)
                      +++.+|+.|...|.|++|++|+|+|...|
T Consensus        48 ~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           48 YKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             -----------------------------
T ss_pred             ccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            67899998999999999999999998765

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.65  E-value=5.8e-17  Score=119.53  Aligned_cols=70  Identities=33%  Similarity=0.847  Sum_probs=30.9

Q ss_pred             cCccccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccc
Q 024271          159 QRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWE  238 (270)
Q Consensus       159 ~~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~  238 (270)
                      ...||+++|+.|+..|.|++|++|+|+|+..+++..                             .....+++.+|++|.
T Consensus         7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~-----------------------------~~~~~~k~~~C~~f~   57 (77)
T 1m9o_A            7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA-----------------------------NRHPKYKTELCHKFK   57 (77)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT-----------------------------C--------------
T ss_pred             CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccc-----------------------------cccccccCCcccchh
Confidence            357899999999889999999999999999876431                             122467789999998


Q ss_pred             ccccCCCCCCCCCCCCccc
Q 024271          239 LTGYCPFGNKCHFAHGIQE  257 (270)
Q Consensus       239 ~~G~C~~G~~CrFaHg~~e  257 (270)
                      .+|.|++|++|+|+|+..|
T Consensus        58 ~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           58 LQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             -------------------
T ss_pred             hCcCCCCcCcCCCCCCCCC
Confidence            8999999999999999876

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=6.4e-13  Score=98.23  Aligned_cols=58  Identities=26%  Similarity=0.488  Sum_probs=48.3

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCcccc
Q 024271           85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG  164 (270)
Q Consensus        85 ~~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt  164 (270)
                      ..+|+.+|++|+.|.|.+|++|.|+|+....                                               ++
T Consensus         6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~-----------------------------------------------~~   38 (77)
T 2d9n_A            6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT-----------------------------------------------KM   38 (77)
T ss_dssp             SCCTTSBCHHHHTTCCSCTTSSSSBCSCCTT-----------------------------------------------TS
T ss_pred             CCCcceeCHhHccCcCCCCCCCCCccccccC-----------------------------------------------cC
Confidence            3568899999999999999999999986321                                               23


Q ss_pred             ccCccccccCCCCCCCCCCCCCcccc
Q 024271          165 RHCKKFYTEEGCPYGENCTFLHDEQS  190 (270)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~e  190 (270)
                      .+|+.|+..|.|. |+.|+|+|...+
T Consensus        39 ~~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A           39 PECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             CBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             CCCcccCCCCccC-CCCeeccCCCcc
Confidence            5698887779999 999999998753

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.19  E-value=1.2e-11  Score=95.52  Aligned_cols=53  Identities=32%  Similarity=0.646  Sum_probs=46.9

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccc
Q 024271           86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (270)
Q Consensus        86 ~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~  165 (270)
                      .+|+.+|++|+.|.|.+|++|+|+|+.                                                    .
T Consensus        10 ~~k~~lC~~f~~G~C~~G~~C~f~H~~----------------------------------------------------~   37 (98)
T 2cqe_A           10 PKKRELCKFYITGFCARAENCPYMHGD----------------------------------------------------F   37 (98)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSSS----------------------------------------------------S
T ss_pred             CCCCccCcccccCcCCCCCCCCCCCCC----------------------------------------------------C
Confidence            478999999999999999999999961                                                    3


Q ss_pred             cCccccccCCCCCCCCCCCCCcccc
Q 024271          166 HCKKFYTEEGCPYGENCTFLHDEQS  190 (270)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e  190 (270)
                      +|+.|...|.|++|++|+|+|....
T Consensus        38 ~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A           38 PCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             cCcCcccCCcCCCCCCCcccCCCCc
Confidence            5988888999999999999998653

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.12  E-value=3.4e-11  Score=92.92  Aligned_cols=53  Identities=30%  Similarity=0.651  Sum_probs=46.5

Q ss_pred             CccccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccc
Q 024271          160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL  239 (270)
Q Consensus       160 ~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~  239 (270)
                      ..+|+.+|++| ..|.|.+|++|+|+|+.                                           .+|++|..
T Consensus         9 ~~~k~~lC~~f-~~G~C~~G~~C~f~H~~-------------------------------------------~~C~~f~~   44 (98)
T 2cqe_A            9 LPKKRELCKFY-ITGFCARAENCPYMHGD-------------------------------------------FPCKLYHT   44 (98)
T ss_dssp             CSCCCSBCTTT-TTTCCSCSTTCSSBSSS-------------------------------------------SBCSHHHH
T ss_pred             CCCCCccCccc-ccCcCCCCCCCCCCCCC-------------------------------------------CcCcCccc
Confidence            35799999877 57999999999999981                                           46999988


Q ss_pred             cccCCCCCCCCCCCCcc
Q 024271          240 TGYCPFGNKCHFAHGIQ  256 (270)
Q Consensus       240 ~G~C~~G~~CrFaHg~~  256 (270)
                      +|.|++|++|+|+|...
T Consensus        45 ~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           45 TGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             TSCCSSCTTCSSBCCCC
T ss_pred             CCcCCCCCCCcccCCCC
Confidence            99999999999999864

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=6.2e-11  Score=87.47  Aligned_cols=63  Identities=29%  Similarity=0.496  Sum_probs=51.3

Q ss_pred             CccccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccc
Q 024271          160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL  239 (270)
Q Consensus       160 ~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~  239 (270)
                      ..+|+++|++|+. |.|.+|++|+|+|+....                                      ++.+|++|+.
T Consensus         6 ~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~--------------------------------------~~~~C~~f~~   46 (77)
T 2d9n_A            6 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT--------------------------------------KMPECYFYSK   46 (77)
T ss_dssp             SCCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT--------------------------------------TSCBCHHHHH
T ss_pred             CCCcceeCHhHcc-CcCCCCCCCCCccccccC--------------------------------------cCCCCcccCC
Confidence            4578899987766 999999999999987531                                      2468999996


Q ss_pred             cccCCCCCCCCCCCCcccccccc
Q 024271          240 TGYCPFGNKCHFAHGIQEFCIYG  262 (270)
Q Consensus       240 ~G~C~~G~~CrFaHg~~el~~~~  262 (270)
                      .|.|. |++|+|+|...+.....
T Consensus        47 ~G~C~-~~~C~f~H~~~~~~~~~   68 (77)
T 2d9n_A           47 FGECS-NKECPFLHIDPESKIKD   68 (77)
T ss_dssp             TCCCC-CSSCSSBCCCTTSSCSS
T ss_pred             CCccC-CCCeeccCCCccccCCC
Confidence            69999 99999999987665443

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.06  E-value=4.3e-11  Score=87.31  Aligned_cols=58  Identities=26%  Similarity=0.481  Sum_probs=47.7

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCcccc
Q 024271           85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG  164 (270)
Q Consensus        85 ~~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt  164 (270)
                      ...|+.+|++|+.|.|.+|++|.|+|+....                                               ++
T Consensus        12 ~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~-----------------------------------------------~~   44 (72)
T 2rhk_C           12 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT-----------------------------------------------KM   44 (72)
T ss_dssp             SCCCCSBCHHHHTTCCCCGGGSSSBCSCCTT-----------------------------------------------SC
T ss_pred             CCCcCeeCHHHhcCCCCCCCCCCCccccccc-----------------------------------------------cC
Confidence            3467899999999999999999999986321                                               33


Q ss_pred             ccCccccccCCCCCCCCCCCCCcccc
Q 024271          165 RHCKKFYTEEGCPYGENCTFLHDEQS  190 (270)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~e  190 (270)
                      .+|+.|+..|.|.+ +.|+|.|....
T Consensus        45 ~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           45 SECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             CBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             CcccccCCCCCCCC-CCeeccCCCcc
Confidence            57977776699999 99999998754

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.02  E-value=1.1e-10  Score=84.61  Aligned_cols=62  Identities=18%  Similarity=0.524  Sum_probs=49.2

Q ss_pred             ccccccccccCCCCCCC-CCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCcccccc
Q 024271           88 KTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRH  166 (270)
Q Consensus        88 KTklC~~f~~G~C~~Gd-~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~~  166 (270)
                      |..+|++|+.|.|.+|+ .|.|+|...++...+                                        ...++.+
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~----------------------------------------~~~~~~v   44 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDT----------------------------------------NDNTVTV   44 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBT----------------------------------------TTTEEEB
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCcccccccc----------------------------------------cCCccee
Confidence            56899999999999999 599999876543321                                        1246788


Q ss_pred             CccccccCCCCCCCCCCCCCccccc
Q 024271          167 CKKFYTEEGCPYGENCTFLHDEQSK  191 (270)
Q Consensus       167 C~~f~~~G~C~~G~~C~f~H~~~e~  191 (270)
                      |..|+. |.|.++ .|+|+|....+
T Consensus        45 C~~flk-G~C~r~-~C~y~H~~~~L   67 (70)
T 3d2q_A           45 CMDYIK-GRCSRE-KCKYFHPPAHL   67 (70)
T ss_dssp             CHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred             ccccCc-CCCCCC-CcCeeCCHHHH
Confidence            977765 999999 99999998754

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.95  E-value=2e-10  Score=83.20  Aligned_cols=64  Identities=22%  Similarity=0.578  Sum_probs=51.0

Q ss_pred             ccccCccccccCCCCCCC-CCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccccc
Q 024271          163 KGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTG  241 (270)
Q Consensus       163 Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~G  241 (270)
                      +..+|+.| ..|.|.+|+ .|+|+|...+..                               ......++.+|.+|+ .|
T Consensus         5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~-------------------------------~~~~~~~~~vC~~fl-kG   51 (70)
T 3d2q_A            5 RLEVCREY-QRGNCNRGENDCRFAHPADSTM-------------------------------IDTNDNTVTVCMDYI-KG   51 (70)
T ss_dssp             EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSC-------------------------------CBTTTTEEEBCHHHH-TT
T ss_pred             cchhCHHH-hcCCCCCCCCCCCCccCccccc-------------------------------ccccCCcceeccccC-cC
Confidence            56789888 569999999 599999886531                               112345578999999 69


Q ss_pred             cCCCCCCCCCCCCcccccc
Q 024271          242 YCPFGNKCHFAHGIQEFCI  260 (270)
Q Consensus       242 ~C~~G~~CrFaHg~~el~~  260 (270)
                      .|.+| .|+|+|...+|+.
T Consensus        52 ~C~r~-~C~y~H~~~~L~~   69 (70)
T 3d2q_A           52 RCSRE-KCKYFHPPAHLQA   69 (70)
T ss_dssp             CCCCT-TCCSBCCCHHHHC
T ss_pred             CCCCC-CcCeeCCHHHHhc
Confidence            99999 9999999988764

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.93  E-value=2.4e-10  Score=83.33  Aligned_cols=60  Identities=28%  Similarity=0.474  Sum_probs=48.0

Q ss_pred             CccccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccc
Q 024271          160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL  239 (270)
Q Consensus       160 ~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~  239 (270)
                      ...++++|++|+. |.|.+|+.|+|+|+...                                      .++.+|.+|+.
T Consensus        12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~--------------------------------------~~~~~C~~f~~   52 (72)
T 2rhk_C           12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM--------------------------------------TKMSECYFYSK   52 (72)
T ss_dssp             SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT--------------------------------------TSCCBCHHHHH
T ss_pred             CCCcCeeCHHHhc-CCCCCCCCCCCcccccc--------------------------------------ccCCcccccCC
Confidence            3568899987766 99999999999998642                                      12468999996


Q ss_pred             cccCCCCCCCCCCCCccccc
Q 024271          240 TGYCPFGNKCHFAHGIQEFC  259 (270)
Q Consensus       240 ~G~C~~G~~CrFaHg~~el~  259 (270)
                      .|.|.+ ++|+|.|...+.+
T Consensus        53 ~G~C~~-~~C~y~H~~p~~k   71 (72)
T 2rhk_C           53 FGECSN-KECPFLHIDPESK   71 (72)
T ss_dssp             HSCCSB-TTCCSBCCCCC--
T ss_pred             CCCCCC-CCeeccCCCcccc
Confidence            699999 9999999876543

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=5e-10  Score=86.37  Aligned_cols=63  Identities=21%  Similarity=0.500  Sum_probs=50.2

Q ss_pred             cccccccccccCCCCCCC-CCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccc
Q 024271           87 FKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (270)
Q Consensus        87 yKTklC~~f~~G~C~~Gd-~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~  165 (270)
                      .|..+|++|+.|.|.+|+ .|+|+|...++...+                                        ...++.
T Consensus        18 ~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~----------------------------------------~~~~~~   57 (98)
T 2e5s_A           18 DKLEVCREFQRGNCARGETDCRFAHPADSTMIDT----------------------------------------SDNTVT   57 (98)
T ss_dssp             SEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCT----------------------------------------TTCEEE
T ss_pred             hhhhhhHHHhcCcCCCCCCCCCCcCCchhccccc----------------------------------------cCCccc
Confidence            467899999999999999 799999886643321                                        123567


Q ss_pred             cCccccccCCCCCCCCCCCCCccccc
Q 024271          166 HCKKFYTEEGCPYGENCTFLHDEQSK  191 (270)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e~  191 (270)
                      +|..|+ .|.|.++ .|+|+|....+
T Consensus        58 vC~~fl-kG~C~r~-~C~y~H~~~~l   81 (98)
T 2e5s_A           58 VCMDYI-KGRCMRE-KCKYFHPPAHL   81 (98)
T ss_dssp             BCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred             cchhhc-cCCCCCC-CcCccCChHHH
Confidence            897665 5999999 99999998765

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=2.5e-10  Score=88.09  Aligned_cols=67  Identities=25%  Similarity=0.507  Sum_probs=53.3

Q ss_pred             ccccccCccccccCCCCCCC-CCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccc
Q 024271          161 SYKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL  239 (270)
Q Consensus       161 ~~Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~  239 (270)
                      ..|..+|+.|+. |.|.+|+ .|+|+|...+...                               .....++.+|.+|+ 
T Consensus        17 ~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-------------------------------~~~~~~~~vC~~fl-   63 (98)
T 2e5s_A           17 TDKLEVCREFQR-GNCARGETDCRFAHPADSTMI-------------------------------DTSDNTVTVCMDYI-   63 (98)
T ss_dssp             SSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-------------------------------CTTTCEEEBCHHHH-
T ss_pred             hhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-------------------------------cccCCccccchhhc-
Confidence            457789988876 9999999 7999999865321                               11234568999998 


Q ss_pred             cccCCCCCCCCCCCCccccccc
Q 024271          240 TGYCPFGNKCHFAHGIQEFCIY  261 (270)
Q Consensus       240 ~G~C~~G~~CrFaHg~~el~~~  261 (270)
                      .|.|.++ +|+|.|...+|...
T Consensus        64 kG~C~r~-~C~y~H~~~~l~~~   84 (98)
T 2e5s_A           64 KGRCMRE-KCKYFHPPAHLQAK   84 (98)
T ss_dssp             HTCCCCT-TCCSBCCCHHHHHH
T ss_pred             cCCCCCC-CcCccCChHHHHHH
Confidence            7999999 99999999887654

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=1.2e-09  Score=78.45  Aligned_cols=37  Identities=35%  Similarity=0.770  Sum_probs=31.4

Q ss_pred             CCCcccccccccccccccCCCCCCCCCCCCcccccccc
Q 024271          225 KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG  262 (270)
Q Consensus       225 ~~~~~kt~lC~~f~~~G~C~~G~~CrFaHg~~el~~~~  262 (270)
                      +++..+++||..| .+|.|+||++|+||||++||+.+.
T Consensus        14 R~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~~   50 (69)
T 2d9m_A           14 RFPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHEWE   50 (69)
T ss_dssp             CCCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHHH
T ss_pred             cCCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhhHH
Confidence            3444567999999 589999999999999999999753

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.59  E-value=2.3e-08  Score=74.68  Aligned_cols=63  Identities=24%  Similarity=0.559  Sum_probs=48.2

Q ss_pred             ccccccccccccCCCCCCC-CCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCcccc
Q 024271           86 FFKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG  164 (270)
Q Consensus        86 ~yKTklC~~f~~G~C~~Gd-~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt  164 (270)
                      ..|..+|+.|+.|.|.+|+ .|+|+|....+..                                          ...+.
T Consensus         6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~------------------------------------------~~~~~   43 (83)
T 3d2n_A            6 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQV------------------------------------------ENGRV   43 (83)
T ss_dssp             GGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE------------------------------------------ETTEE
T ss_pred             cccchhcHHHhcCCCCCCCCCCCCcCCCccccc------------------------------------------cCCce
Confidence            4577899999999999997 9999997632110                                          01245


Q ss_pred             ccCccccccCCCCCCCCCCCCCcccccc
Q 024271          165 RHCKKFYTEEGCPYGENCTFLHDEQSKN  192 (270)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~~  192 (270)
                      ..|..|+ .|.|.++ .|+|.|....+.
T Consensus        44 ~vC~dfl-kG~C~r~-~C~y~H~~~~l~   69 (83)
T 3d2n_A           44 IACFDSL-KGRCSRE-NCKYLHPPPHLK   69 (83)
T ss_dssp             ECCHHHH-TTCCCCS-SCSSCCCCHHHH
T ss_pred             eehhHhh-hccccCC-CcceeCChHHHH
Confidence            7897775 5899998 999999987653

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=8.2e-09  Score=74.07  Aligned_cols=31  Identities=39%  Similarity=0.732  Sum_probs=28.2

Q ss_pred             ccccccccccCCCCCCCCCCCCCCcCccCCC
Q 024271           88 KTKLCCKFRNGTCPYITNCNFAHSIEELRRP  118 (270)
Q Consensus        88 KTklC~~f~~G~C~~Gd~C~FaH~~~elR~p  118 (270)
                      |++||.+|..|.|+||++|+|||+.+|||..
T Consensus        19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~   49 (69)
T 2d9m_A           19 YFSICDRYMNGTCPEGNSCKFAHGNAELHEW   49 (69)
T ss_dssp             CCSBCHHHHHSCCSSCSSCSSBSSHHHHHHH
T ss_pred             CcccCcccCcCCCCCCCccCCcCCHHHHhhH
Confidence            4599999988999999999999999998863

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.53  E-value=3.6e-08  Score=73.69  Aligned_cols=62  Identities=21%  Similarity=0.433  Sum_probs=48.8

Q ss_pred             cccccCccccccCCCCCCC-CCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccccc
Q 024271          162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (270)
Q Consensus       162 ~Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~  240 (270)
                      .+..+|+.|+. |.|.+|+ .|+|+|.......                                 ...+..+|.+|+ .
T Consensus         7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~---------------------------------~~~~~~vC~dfl-k   51 (83)
T 3d2n_A            7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSCQV---------------------------------ENGRVIACFDSL-K   51 (83)
T ss_dssp             GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE---------------------------------ETTEEECCHHHH-T
T ss_pred             ccchhcHHHhc-CCCCCCCCCCCCcCCCccccc---------------------------------cCCceeehhHhh-h
Confidence            46688998887 9999997 9999998854211                                 112357899998 7


Q ss_pred             ccCCCCCCCCCCCCccccc
Q 024271          241 GYCPFGNKCHFAHGIQEFC  259 (270)
Q Consensus       241 G~C~~G~~CrFaHg~~el~  259 (270)
                      |.|.++ .|+|.|....|.
T Consensus        52 G~C~r~-~C~y~H~~~~l~   69 (83)
T 3d2n_A           52 GRCSRE-NCKYLHPPPHLK   69 (83)
T ss_dssp             TCCCCS-SCSSCCCCHHHH
T ss_pred             ccccCC-CcceeCChHHHH
Confidence            999999 999999987654

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.42  E-value=9e-08  Score=72.37  Aligned_cols=61  Identities=25%  Similarity=0.556  Sum_probs=47.0

Q ss_pred             cccccccccccCCCCCCC-CCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccc
Q 024271           87 FKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (270)
Q Consensus        87 yKTklC~~f~~G~C~~Gd-~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~  165 (270)
                      .+..+|+.|+.|.|.+|+ .|+|+|....+..                                          ..-+..
T Consensus        15 ~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v------------------------------------------~~~~~~   52 (89)
T 2rpp_A           15 LTLEVCRQFQRGTCSRSDEECKFAHPPKSCQV------------------------------------------ENGRVI   52 (89)
T ss_dssp             SEECBCHHHHHTCCCCCTTTSSSBCCCSSSCC------------------------------------------BTTBEE
T ss_pred             chhhhchHHhcCCCCCCCCCCCCcCCCccccc------------------------------------------cCCcee
Confidence            456899999999999998 9999997643211                                          012456


Q ss_pred             cCccccccCCCCCCCCCCCCCccccc
Q 024271          166 HCKKFYTEEGCPYGENCTFLHDEQSK  191 (270)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e~  191 (270)
                      .|..|+ .|.|.++ .|+|.|....+
T Consensus        53 vC~dfl-kG~C~r~-~Cky~H~~~hl   76 (89)
T 2rpp_A           53 ACFDSL-KGRCSRE-NCKYLHPPTHL   76 (89)
T ss_dssp             BCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred             eehhhh-hCcCCCC-CcceecCHHHH
Confidence            797775 6999987 99999998765

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.29  E-value=3e-07  Score=69.51  Aligned_cols=63  Identities=21%  Similarity=0.433  Sum_probs=49.3

Q ss_pred             cccccCccccccCCCCCCC-CCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccccc
Q 024271          162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (270)
Q Consensus       162 ~Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~  240 (270)
                      .+..+|+.|+. |.|..|+ .|+|+|.......                                 ..-+...|.+|+ .
T Consensus        15 ~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v---------------------------------~~~~~~vC~dfl-k   59 (89)
T 2rpp_A           15 LTLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV---------------------------------ENGRVIACFDSL-K   59 (89)
T ss_dssp             SEECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC---------------------------------BTTBEEBCHHHH-H
T ss_pred             chhhhchHHhc-CCCCCCCCCCCCcCCCccccc---------------------------------cCCceeeehhhh-h
Confidence            45678999877 9999998 9999998864211                                 112357899998 8


Q ss_pred             ccCCCCCCCCCCCCcccccc
Q 024271          241 GYCPFGNKCHFAHGIQEFCI  260 (270)
Q Consensus       241 G~C~~G~~CrFaHg~~el~~  260 (270)
                      |.|.++ .|+|.|....|..
T Consensus        60 G~C~r~-~Cky~H~~~hl~~   78 (89)
T 2rpp_A           60 GRCSRE-NCKYLHPPTHLKT   78 (89)
T ss_dssp             TCCCCT-TCCSBCCCHHHHH
T ss_pred             CcCCCC-CcceecCHHHHHH
Confidence            999998 9999999876543

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.85  E-value=1.5e-05  Score=69.46  Aligned_cols=46  Identities=26%  Similarity=0.729  Sum_probs=37.8

Q ss_pred             ccccCccccc----cCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccc
Q 024271          163 KGRHCKKFYT----EEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWE  238 (270)
Q Consensus       163 Kt~~C~~f~~----~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~  238 (270)
                      -.++|..| .    .|.|.+++.|..+|                                              +|.+|.
T Consensus       150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLH----------------------------------------------IC~~Fl  182 (229)
T 3u9g_A          150 LPEICKSY-KGEGRKQTCGQPQPCERLH----------------------------------------------ICEHFT  182 (229)
T ss_dssp             SCCBCTTC-CCSSSCCSCSSSSCCCSBC----------------------------------------------SCHHHH
T ss_pred             CchHHHHh-CCCCCCCcCCCCCCCccee----------------------------------------------ccchhh
Confidence            34789888 5    25899999999777                                              698888


Q ss_pred             ccccCCCCCCCCCCCCccc
Q 024271          239 LTGYCPFGNKCHFAHGIQE  257 (270)
Q Consensus       239 ~~G~C~~G~~CrFaHg~~e  257 (270)
                       .|.|++ .+|.-.|...+
T Consensus       183 -~G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          183 -RGNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             -TTCCCC-SSCSSCCCTTS
T ss_pred             -cCCcCC-CCccCccCccC
Confidence             899999 79999998743

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.54  E-value=0.00069  Score=45.07  Aligned_cols=28  Identities=36%  Similarity=0.932  Sum_probs=25.3

Q ss_pred             ccccccccccccccCCCCCCCCCCCCcc
Q 024271          229 WKTRICNKWELTGYCPFGNKCHFAHGIQ  256 (270)
Q Consensus       229 ~kt~lC~~f~~~G~C~~G~~CrFaHg~~  256 (270)
                      .++.+|..|.+.|+|++|.+|.+.|..+
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            4578999999999999999999999864

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.44  E-value=0.00078  Score=44.82  Aligned_cols=28  Identities=29%  Similarity=0.545  Sum_probs=26.0

Q ss_pred             cccccCccccccCCCCCCCCCCCCCccc
Q 024271          162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ  189 (270)
Q Consensus       162 ~Kt~~C~~f~~~G~C~~G~~C~f~H~~~  189 (270)
                      .++.+|..|.+.|.|++|.+|.+.|+..
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            4778999999999999999999999985

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=94.42  E-value=0.0025  Score=46.85  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=16.3

Q ss_pred             cccccccccccCCCCCCCCCCCCcc
Q 024271          232 RICNKWELTGYCPFGNKCHFAHGIQ  256 (270)
Q Consensus       232 ~lC~~f~~~G~C~~G~~CrFaHg~~  256 (270)
                      .+|+|+.   .|.. ..|.|.|...
T Consensus        53 ~~Crf~~---~C~n-~~C~F~Hp~g   73 (80)
T 2lhn_A           53 EDCRFGV---NCKN-IYCLFRHPPG   73 (80)
Confidence            4698765   7888 7899999754

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=93.80  E-value=0.039  Score=47.98  Aligned_cols=48  Identities=31%  Similarity=0.692  Sum_probs=38.8

Q ss_pred             ccccccccccccc-----CCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCcccccccccccc
Q 024271           85 MFFKTKLCCKFRN-----GTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ  159 (270)
Q Consensus        85 ~~yKTklC~~f~~-----G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~  159 (270)
                      .++--++|.+| +     |.|.+++.|...|                                                 
T Consensus       147 p~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------------------------------  176 (229)
T 3u9g_A          147 PFFLPEICKSY-KGEGRKQTCGQPQPCERLH-------------------------------------------------  176 (229)
T ss_dssp             GGGSCCBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------------------------------
T ss_pred             CccCchHHHHh-CCCCCCCcCCCCCCCccee-------------------------------------------------
Confidence            34445899999 6     5899999999999                                                 


Q ss_pred             CccccccCccccccCCCCCCCCCCCCCcccc
Q 024271          160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQS  190 (270)
Q Consensus       160 ~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e  190 (270)
                            +|.+| ..|.|+| ..|.-+|+..+
T Consensus       177 ------IC~~F-l~G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          177 ------ICEHF-TRGNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             ------SCHHH-HTTCCCC-SSCSSCCCTTS
T ss_pred             ------ccchh-hcCCcCC-CCccCccCccC
Confidence                  38555 5699999 89999999754

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=90.39  E-value=0.061  Score=47.22  Aligned_cols=23  Identities=30%  Similarity=0.717  Sum_probs=21.4

Q ss_pred             ccccccccCCCCCCCCCCCCCCc
Q 024271           90 KLCCKFRNGTCPYITNCNFAHSI  112 (270)
Q Consensus        90 klC~~f~~G~C~~Gd~C~FaH~~  112 (270)
                      .+|.+|..|.|.+|+.|.|.|..
T Consensus        71 ~~C~ffakG~C~~G~~C~y~H~l   93 (240)
T 3u1l_A           71 FFCLFFAKGMCCLGPKCEYLHHI   93 (240)
T ss_dssp             SBCHHHHTTCCSCGGGCSSBBSC
T ss_pred             eEcCccccCCCCCCCCCCccCCC
Confidence            48999999999999999999964

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=90.25  E-value=0.052  Score=47.69  Aligned_cols=24  Identities=33%  Similarity=0.786  Sum_probs=21.3

Q ss_pred             cccccccccccCCCCCCCCCCCCcc
Q 024271          232 RICNKWELTGYCPFGNKCHFAHGIQ  256 (270)
Q Consensus       232 ~lC~~f~~~G~C~~G~~CrFaHg~~  256 (270)
                      .+|.||. .|.|.+|..|.|.|...
T Consensus        71 ~~C~ffa-kG~C~~G~~C~y~H~lP   94 (240)
T 3u1l_A           71 FFCLFFA-KGMCCLGPKCEYLHHIP   94 (240)
T ss_dssp             SBCHHHH-TTCCSCGGGCSSBBSCC
T ss_pred             eEcCccc-cCCCCCCCCCCccCCCC
Confidence            5899998 69999999999999754

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=88.60  E-value=0.077  Score=38.87  Aligned_cols=49  Identities=29%  Similarity=0.669  Sum_probs=35.2

Q ss_pred             ccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccccccCC
Q 024271          165 RHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCP  244 (270)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~G~C~  244 (270)
                      +.|++|   -.|.. ..|.|.|...                                         ..+|+++.   .|.
T Consensus        10 e~CKf~---~~Ctn-~~C~f~Hp~~-----------------------------------------~~~Cr~g~---~C~   41 (80)
T 2lhn_A           10 EQCKFG---THCTN-KRCKYRHARS-----------------------------------------HIMCREGA---NCT   41 (80)
Confidence            679655   36887 9999999552                                         14688765   788


Q ss_pred             CCCCCCCCCCcccccccc
Q 024271          245 FGNKCHFAHGIQEFCIYG  262 (270)
Q Consensus       245 ~G~~CrFaHg~~el~~~~  262 (270)
                      . ..|.|+|...+.-+++
T Consensus        42 ~-~~C~f~HP~~~~Crf~   58 (80)
T 2lhn_A           42 R-IDCLFGHPINEDCRFG   58 (80)
Confidence            8 6799999865555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	7e-12
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-09
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	7e-05
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	1e-11
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	5e-10
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	8e-05
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	2e-11
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	4e-07
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	1e-06

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (137), Expect = 7e-12
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
           + +KT +C  +E +G C +G KC FAHG  E
Sbjct: 2   TRYKTELCRPFEESGTCKYGEKCQFAHGFHE 32

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 87  FKTKLCCKF-RNGTCPYITNCNFAHSIEELR 116
           +KT+LC  F  +GTC Y   C FAH   ELR
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELR 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 7e-05
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
           YK   C+ F     C YGE C F H   
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFH 31

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (136), Expect = 1e-11
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 225 KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
             S +KT +C  +  +G C +G KC FAHG+ E
Sbjct: 3   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGE 35

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (124), Expect = 5e-10
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 86  FFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRP 118
            +KT+LC  +  +G C Y   C FAH + ELR+ 
Sbjct: 6   RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 39

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 8e-05
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
           YK   C+ +     C YG  C F H   
Sbjct: 7   YKTELCRTYSESGRCRYGAKCQFAHGLG 34

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (133), Expect = 2e-11
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 225 KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
           +   +KT +C  +   G+CP+G +CHF H   E
Sbjct: 2   RHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 34

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 4e-07
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 87  FKTKLCCKFRN-GTCPYITNCNFAHSIEE 114
           +KT+LC  F   G CPY   C+F H+ +E
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHNADE 34

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 1e-06
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
           YK   C+ F+T   CPYG  C F+H+  
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHNAD 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.34
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.27
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.24
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.21
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.16
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.06
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.95
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.76
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.67
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.42
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	93.93
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	93.82

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.6e-13  Score=86.38  Aligned_cols=37  Identities=38%  Similarity=0.871  Sum_probs=34.5

Q ss_pred             CCCcccccccccccccccCCCCCCCCCCCCccccccc
Q 024271          225 KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIY  261 (270)
Q Consensus       225 ~~~~~kt~lC~~f~~~G~C~~G~~CrFaHg~~el~~~  261 (270)
                      .+..|||++|++|...|.|++|++|+||||++|||++
T Consensus         3 ~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           3 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            4578999999999999999999999999999999986

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.1e-12  Score=83.45  Aligned_cols=36  Identities=39%  Similarity=0.846  Sum_probs=32.8

Q ss_pred             Cccccccccccccc-cCCCCCCCCCCCCCCcCccCCC
Q 024271           83 GKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRP  118 (270)
Q Consensus        83 ~~~~yKTklC~~f~-~G~C~~Gd~C~FaH~~~elR~p  118 (270)
                      ...+|||+||++|. .|.|++|++|.|||+.+|||.+
T Consensus         3 ~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           3 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            45689999999998 5999999999999999999875

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.9e-13  Score=83.58  Aligned_cols=34  Identities=41%  Similarity=0.997  Sum_probs=32.0

Q ss_pred             CcccccccccccccccCCCCCCCCCCCCcccccc
Q 024271          227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCI  260 (270)
Q Consensus       227 ~~~kt~lC~~f~~~G~C~~G~~CrFaHg~~el~~  260 (270)
                      ..|||++|++|...|.|++|++|+||||++|||.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            4799999999998999999999999999999985

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-12  Score=81.68  Aligned_cols=33  Identities=48%  Similarity=0.956  Sum_probs=30.7

Q ss_pred             cccccccccccc-cCCCCCCCCCCCCCCcCccCC
Q 024271           85 MFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRR  117 (270)
Q Consensus        85 ~~yKTklC~~f~-~G~C~~Gd~C~FaH~~~elR~  117 (270)
                      .+|||+||++|. .|.|++|++|+|||+.+|||.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            579999999998 699999999999999999985

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.8e-12  Score=79.37  Aligned_cols=32  Identities=38%  Similarity=1.095  Sum_probs=29.8

Q ss_pred             CCcccccccccccccccCCCCCCCCCCCCccc
Q 024271          226 PSNWKTRICNKWELTGYCPFGNKCHFAHGIQE  257 (270)
Q Consensus       226 ~~~~kt~lC~~f~~~G~C~~G~~CrFaHg~~e  257 (270)
                      .+.|||++|+.|...|.|+||++|+||||++|
T Consensus         3 hpkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           3 HPKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CTTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            35799999999999999999999999999986

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.2e-11  Score=75.65  Aligned_cols=30  Identities=43%  Similarity=0.921  Sum_probs=27.5

Q ss_pred             cccccccccccc-cCCCCCCCCCCCCCCcCc
Q 024271           85 MFFKTKLCCKFR-NGTCPYITNCNFAHSIEE  114 (270)
Q Consensus        85 ~~yKTklC~~f~-~G~C~~Gd~C~FaH~~~e  114 (270)
                      .+|||+||++|. .|.|+||++|+|||+.+|
T Consensus         4 pkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           4 PKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            579999999998 599999999999999865

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.6e-06  Score=49.21  Aligned_cols=25  Identities=32%  Similarity=0.869  Sum_probs=22.4

Q ss_pred             cccccccccccccCCCCCCCCCCCCc
Q 024271          230 KTRICNKWELTGYCPFGNKCHFAHGI  255 (270)
Q Consensus       230 kt~lC~~f~~~G~C~~G~~CrFaHg~  255 (270)
                      |..+|++|. +|+|.+|++|.|.|.+
T Consensus         5 kkelCKfYv-qGyCtrgenC~ymH~e   29 (29)
T d2cqea2           5 KRELCKFYI-TGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCSBCTTTT-TTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhe-eeeecCCcCcccccCC
Confidence            458999988 9999999999999974

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=6.9e-06  Score=46.58  Aligned_cols=24  Identities=33%  Similarity=0.771  Sum_probs=22.3

Q ss_pred             ccccccccccCCCCCCCCCCCCCC
Q 024271           88 KTKLCCKFRNGTCPYITNCNFAHS  111 (270)
Q Consensus        88 KTklC~~f~~G~C~~Gd~C~FaH~  111 (270)
                      |..+|++|.+|.|.+|++|.|.|.
T Consensus         5 kkelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhhhheeeeecCCcCcccccC
Confidence            458999999999999999999996

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0014  Score=42.98  Aligned_cols=23  Identities=35%  Similarity=0.803  Sum_probs=20.7

Q ss_pred             ccccccccccCCCCCCCCCCCCc
Q 024271          233 ICNKWELTGYCPFGNKCHFAHGI  255 (270)
Q Consensus       233 lC~~f~~~G~C~~G~~CrFaHg~  255 (270)
                      +|++|...+.|-.|++|+|.|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            69999978899999999999953

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0025  Score=41.68  Aligned_cols=23  Identities=39%  Similarity=0.889  Sum_probs=20.8

Q ss_pred             cCccccccCCCCCCCCCCCCCcc
Q 024271          166 HCKKFYTEEGCPYGENCTFLHDE  188 (270)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~  188 (270)
                      +|+.|..++.|-.|++|+|+|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            59899999999999999999964

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.0083  Score=35.50  Aligned_cols=26  Identities=35%  Similarity=0.949  Sum_probs=23.2

Q ss_pred             ccccccccccccccCCCCCCCCCCCC
Q 024271          229 WKTRICNKWELTGYCPFGNKCHFAHG  254 (270)
Q Consensus       229 ~kt~lC~~f~~~G~C~~G~~CrFaHg  254 (270)
                      -.+.+|..|.+.|.||.|..|.-.|.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCc
Confidence            34679999999999999999999885

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.0081  Score=35.52  Aligned_cols=27  Identities=30%  Similarity=0.562  Sum_probs=24.2

Q ss_pred             cccccCccccccCCCCCCCCCCCCCcc
Q 024271          162 YKGRHCKKFYTEEGCPYGENCTFLHDE  188 (270)
Q Consensus       162 ~Kt~~C~~f~~~G~C~~G~~C~f~H~~  188 (270)
                      -.+.+|..|...|.|+.|.+|+.+|+.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCcC
Confidence            467889999999999999999999973