Citrus Sinensis ID: 024277

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKTLSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASIGRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVGYPVR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHccccHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccccccccccccccccccccHccccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEccccccccccccccccccccccccccccccccccccccccEEEEEccHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msgatrvrsmnvaesetrpvlgpagnktgslsawkpaskpsrkiekspvevnaaeekktlspsskaatppasklspkshslsvpsILRRHEQLLQSNlslnascssdastdsfhsrasigrltrsnsvgirrkpfpskprsvvsdggldspppdgsqtkkrcawvtpntdpcyaafhdeewgvpvhddkKLFELLVLSGalseltwpailskrhifrevfvgfdpiaVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVGYPVR
Flexible Loop (DISEMBL)
msgatrvrsmnvaesetrpvlgpagnktgslsawkpaskpsrkiekspvevnaaeekktlspsskaatppasklspkshSLSVPSILRRHEQLLQSNLSLNASCSSDastdsfhsrasigrltrsnsvgirrkpfpskprsvvsdggldspppdgsqtkkrcawVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEnarqiskvgypvr
Low Complexity Region (SEG)
MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKtlspsskaatppasklspksHSLSVPSILRRHEqllqsnlslnascssdasTDSFHSRASIGRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNekkllaagsaassllselklRAIIENARQISKVGYPVR
Disordered region (IsUnstruct)
****************************************************************************************************************************************************************RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR**********
Disordered Region (DISOPRED)
***************************************************************************************************************************************************************KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVGYPV*
Disordered Region (DISEMBL)
**************SETRPVLGPAGN********************************************************VPSILRRHEQLLQSNLSLNA************SRASIGRLTRSNSVGIRRKPF*************************RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVGYPVR
Disordered Region (DISPRO)
***************************************************************************************************************************************************************KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVGYPVR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKTLSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASIGRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVGYPVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
P05100	187	DNA-3-methyladenine glyco	N/A	no	0.396	0.572	0.410	6e-18
Q7VG78	1375	Probable GMP synthase [gl	yes	no	0.414	0.081	0.4	6e-16
P44321	185	DNA-3-methyladenine glyco	yes	no	0.362	0.529	0.37	4e-13

>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 5/112 (4%)

Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
           +RC WV+   DP Y A+HD EWGVP  D KKLFE++ L G  + L+W  +L KR  +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 220 FVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR---QISKVGYP 268
           F  FDP+ V+ + E+ +      A  +    K++AII NAR   Q+ + G P
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEP 111

Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions.
Escherichia coli (strain K12) (taxid: 83333)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 2EC: 0

>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 154 DGSQTKKRCAWVTPNTDPC---YAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAIL 210
           +G + K RCAW T   +     Y  +HD EWG P+H+DKKLFE LVL G  + L+W  IL
Sbjct: 780 EGVREKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWITIL 839

Query: 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKV 265
            KR  FR  F  FDP  V+  +E K+         + +  K+ A I NA+    V
Sbjct: 840 KKREAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAV 894

Catalyzes the synthesis of GMP from XMP.

Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 161 RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVF 220
           RC WV   +   Y  +HD+EWG P  D +KLFE + L G  + L+W  +L KR  +RE F
Sbjct: 4   RCPWVGEQS--IYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAF 61

Query: 221 VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260
             FDP  ++K+    + A    +  +    KL AI++NA+
Sbjct: 62  HQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAK 101

Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
255576987	380	DNA-3-methyladenine glycosylase, putativ	0.959	0.681	0.790	1e-114
224091765	381	predicted protein [Populus trichocarpa]	0.959	0.679	0.761	1e-105
224142383	380	predicted protein [Populus trichocarpa]	0.959	0.681	0.771	1e-105
357480071	375	Methyladenine glycosylase protein-like p	0.925	0.666	0.738	1e-103
356516982	383	PREDICTED: probable GMP synthase [glutam	0.962	0.678	0.740	1e-101
356562573	373	PREDICTED: probable GMP synthase [glutam	0.929	0.672	0.751	2e-99
356500655	371	PREDICTED: probable GMP synthase [glutam	0.925	0.673	0.729	2e-96
15242914	347	DNA-3-methyladenine glycosylase I [Arabi	0.959	0.746	0.641	2e-88
225445871	375	PREDICTED: probable GMP synthase [glutam	0.940	0.677	0.703	4e-87
297793315	349	methyladenine glycosylase family protein	0.962	0.744	0.631	2e-85

>gi|255576987|ref|XP_002529378.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] gi|223531126|gb|EEF32974.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/267 (79%), Positives = 227/267 (85%), Gaps = 8/267 (2%)

Query: 1   MSGATRVRSMNVAESETRPVLGPAGN-KTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKT 59
           MSGA RVRSMNVA+SETRPVLGP GN K GSLSA KPASK  RK+E SP  V   +EKK 
Sbjct: 1   MSGAPRVRSMNVADSETRPVLGPTGNNKAGSLSAKKPASKQLRKVETSPEAVKLGQEKKL 60

Query: 60  LSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASI 119
           ++       P AS LSPKSHS+SVPS+LRRHEQLL SNLSLNASCSSDASTDSFHSRAS 
Sbjct: 61  VT------VPTASALSPKSHSVSVPSVLRRHEQLLHSNLSLNASCSSDASTDSFHSRAST 114

Query: 120 GRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPP-DGSQTKKRCAWVTPNTDPCYAAFHD 178
           GRLTRSNS+G RRK +  KPRSVVSDGGL+SPPP DGSQ KK CAWVTPN DPCY AFHD
Sbjct: 115 GRLTRSNSLGTRRKQYALKPRSVVSDGGLESPPPSDGSQAKKSCAWVTPNADPCYTAFHD 174

Query: 179 EEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238
           EEWG+PVHDDKKLFELLVLSGAL+ELTWPAILSKRHIFREVF  FDP+ VSK NEKK++A
Sbjct: 175 EEWGIPVHDDKKLFELLVLSGALAELTWPAILSKRHIFREVFANFDPVVVSKFNEKKIIA 234

Query: 239 AGSAASSLLSELKLRAIIENARQISKV 265
            GS ASSLLSE+KLRAIIENARQISKV
Sbjct: 235 PGSTASSLLSEIKLRAIIENARQISKV 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091765|ref|XP_002309346.1| predicted protein [Populus trichocarpa] gi|222855322|gb|EEE92869.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/268 (76%), Positives = 219/268 (81%), Gaps = 9/268 (3%)

Query: 1   MSGATRVRSMNVAESETRPVLGPAGN-KTGSL-SAWKPASKPSRKIEKSPVEVNAAEEKK 58
           MSGA RVRSMNVA+SE RPVLGP GN K G L SA KPASK  RK  KSP E    EEKK
Sbjct: 1   MSGAPRVRSMNVADSEARPVLGPTGNTKAGPLTSARKPASKQLRKDGKSPEEAKLGEEKK 60

Query: 59  TLSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRAS 118
            L+       P    LSPKS S +  S+LRRHEQLL SNLSLNASCSSDASTDSFHSRAS
Sbjct: 61  VLT------VPTVGNLSPKSLSGNFSSVLRRHEQLLHSNLSLNASCSSDASTDSFHSRAS 114

Query: 119 IGRLTRSNSVGIRRKPFPSKPRSVVSDGGLDS-PPPDGSQTKKRCAWVTPNTDPCYAAFH 177
            GRL RSN+VG RRK + SKPRSVVSDGGL+S P  DGSQ+KK CAWVTPNTDPCY AFH
Sbjct: 115 TGRLIRSNNVGTRRKQYVSKPRSVVSDGGLESLPSSDGSQSKKSCAWVTPNTDPCYTAFH 174

Query: 178 DEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLL 237
           DEEWG+PVHDD+KLFELLVLSGAL+ELTWPAILSKRH+FREVF  FDPIAVSK NEKK++
Sbjct: 175 DEEWGLPVHDDRKLFELLVLSGALAELTWPAILSKRHMFREVFADFDPIAVSKFNEKKII 234

Query: 238 AAGSAASSLLSELKLRAIIENARQISKV 265
           A GS A+SLLSELKLRAIIENARQISKV
Sbjct: 235 APGSTAASLLSELKLRAIIENARQISKV 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142383|ref|XP_002324538.1| predicted protein [Populus trichocarpa] gi|222865972|gb|EEF03103.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/267 (77%), Positives = 223/267 (83%), Gaps = 8/267 (2%)

Query: 1   MSGATRVRSMNVAESETRPVLGPAGN-KTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKT 59
           MSGA RVRSMNVA+SE R VLGP GN K G LSA KP SK SRK+EKSP EV   EEKKT
Sbjct: 1   MSGAPRVRSMNVADSEARSVLGPTGNNKAGPLSARKPVSKQSRKVEKSPEEVKLGEEKKT 60

Query: 60  LSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASI 119
           L+       P    LSPKSHSL++ S+LRRHE LL SNLSLNASCSSDASTDSFHSRAS 
Sbjct: 61  LT------VPAVGTLSPKSHSLNISSVLRRHELLLHSNLSLNASCSSDASTDSFHSRAST 114

Query: 120 GRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPP-PDGSQTKKRCAWVTPNTDPCYAAFHD 178
           GRLTRSNS G RRK +  +PRS VS+GGL+SPP PD SQ+KK CAWVTPNTDPCYA FHD
Sbjct: 115 GRLTRSNSAGTRRKQYVLRPRSFVSEGGLESPPSPDDSQSKKSCAWVTPNTDPCYATFHD 174

Query: 179 EEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238
           EEWGVP+HDD+KLFELLVLSGAL+ELTWPAILSKRHIFREVF  FDPIAVSK NEKK+LA
Sbjct: 175 EEWGVPIHDDRKLFELLVLSGALAELTWPAILSKRHIFREVFADFDPIAVSKFNEKKILA 234

Query: 239 AGSAASSLLSELKLRAIIENARQISKV 265
            GS A+SLLSELKLRAI+ENARQISKV
Sbjct: 235 PGSTATSLLSELKLRAIVENARQISKV 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480071|ref|XP_003610321.1| Methyladenine glycosylase protein-like protein [Medicago truncatula] gi|355511376|gb|AES92518.1| Methyladenine glycosylase protein-like protein [Medicago truncatula]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/264 (73%), Positives = 215/264 (81%), Gaps = 14/264 (5%)

Query: 2   SGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKTLS 61
           SG  R+RSMNVA+SE RPV GPAGNKTGS S+ K ASKP RK EK   EV+ A+EKK   
Sbjct: 4   SGGPRLRSMNVADSEARPVFGPAGNKTGSYSSRKDASKPLRKAEKLGKEVDLAKEKK--- 60

Query: 62  PSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASIGR 121
                      + SP+SHS SV S+LRRHEQLL SNLS+NASCSSDASTDSFHSRAS GR
Sbjct: 61  -----------EASPQSHSASVSSVLRRHEQLLHSNLSMNASCSSDASTDSFHSRASTGR 109

Query: 122 LTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEEW 181
           LTRSNS G+ RK   SKPRSVVSDG L+SPPPDG+Q KKRCAW+TPNT+P YA FHDEEW
Sbjct: 110 LTRSNSYGLTRKRSVSKPRSVVSDGVLESPPPDGAQPKKRCAWITPNTEPYYATFHDEEW 169

Query: 182 GVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241
           GVPVHDDKKLFE+LVLS ALSELTWPAILSKRHIFREVF  FDP+AVSKLNEKK++  G+
Sbjct: 170 GVPVHDDKKLFEVLVLSSALSELTWPAILSKRHIFREVFADFDPVAVSKLNEKKVITPGT 229

Query: 242 AASSLLSELKLRAIIENARQISKV 265
            ASSLLS+ KLR IIENARQISKV
Sbjct: 230 TASSLLSDQKLRGIIENARQISKV 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516982|ref|XP_003527169.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/266 (74%), Positives = 221/266 (83%), Gaps = 6/266 (2%)

Query: 1   MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRK-IEKSPVEVNAAEEKKT 59
           MSGA R+RSMNVA+SE RPVLGPAGNKTGSLS+ K ASKP RK ++K   E+ + +EKK 
Sbjct: 1   MSGAPRLRSMNVADSEARPVLGPAGNKTGSLSSRKTASKPLRKKVDKLLDEIASVKEKK- 59

Query: 60  LSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASI 119
             P     +  A+  SP+SHS SV  +L RHEQLL SNLSLNASCSSDASTDSFHSRAS 
Sbjct: 60  --PHQVLLSSVATS-SPQSHSASVSLLLPRHEQLLHSNLSLNASCSSDASTDSFHSRAST 116

Query: 120 GRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDE 179
           GRLTRS S+G RRKP+ SKPRSV SDG L+SP  DGSQ+ KRCAWVTPNT+PCYA FHDE
Sbjct: 117 GRLTRSYSLGSRRKPYVSKPRSVASDGVLESPT-DGSQSNKRCAWVTPNTEPCYATFHDE 175

Query: 180 EWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAA 239
           EWGVPVHDDKKLFELLVLS  L+E TWPAILSKRHIFREVFV F+P+AVSKLNEKK++  
Sbjct: 176 EWGVPVHDDKKLFELLVLSSVLAEHTWPAILSKRHIFREVFVDFEPVAVSKLNEKKIMTP 235

Query: 240 GSAASSLLSELKLRAIIENARQISKV 265
           G+ ASSLLSE+KLRAIIENARQISKV
Sbjct: 236 GTIASSLLSEVKLRAIIENARQISKV 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|356562573|ref|XP_003549544.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/266 (75%), Positives = 216/266 (81%), Gaps = 15/266 (5%)

Query: 1   MSGATRVRSMNVAESET-RPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKT 59
           MSG  R+RSMNV +SE  RPV GPAGNKTGSLS+ K ASKP RK EK   E  A E+KK+
Sbjct: 1   MSGP-RLRSMNVGDSEAARPVFGPAGNKTGSLSSRKTASKPLRKAEKLYNE--AKEKKKS 57

Query: 60  LSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASI 119
              SS  A       SP+SHS SV   LRRHEQLL  NLSLNASCSSDASTDSFHSRAS 
Sbjct: 58  YEMSSVVA-------SPQSHSASV---LRRHEQLLHCNLSLNASCSSDASTDSFHSRAST 107

Query: 120 GRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDE 179
           GRLTRSNS+G  RK   SKPRSV SDG L+SPP  GSQ+KKRCAW+TPNT+PCYA FHDE
Sbjct: 108 GRLTRSNSLGCTRKRSVSKPRSVASDGVLESPP-HGSQSKKRCAWITPNTEPCYATFHDE 166

Query: 180 EWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAA 239
           EWGVPVHDDKKLFELLVLS ALSEL+WPAILSKRHIFREVFV FDP+AVSK NEKK++A 
Sbjct: 167 EWGVPVHDDKKLFELLVLSSALSELSWPAILSKRHIFREVFVDFDPVAVSKFNEKKIMAP 226

Query: 240 GSAASSLLSELKLRAIIENARQISKV 265
           GS ASSLLS+LKLRAIIENARQISKV
Sbjct: 227 GSTASSLLSDLKLRAIIENARQISKV 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|356500655|ref|XP_003519147.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 194/266 (72%), Positives = 213/266 (80%), Gaps = 16/266 (6%)

Query: 1   MSGATRVRSMNVAESET-RPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKT 59
           MSG  R+RSMNV +SE  RPV GPAGNKTG LS+ KPASKP RK EK     N A+EKK+
Sbjct: 1   MSGP-RLRSMNVGDSEAARPVFGPAGNKTGPLSSRKPASKPLRKAEKL---YNEAKEKKS 56

Query: 60  LSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASI 119
              S+  A       SP+S+S SV   LRRHEQLL  NLSLNASCSSDASTDSFHSRAS 
Sbjct: 57  YEVSTVVA-------SPQSYSASV---LRRHEQLLHCNLSLNASCSSDASTDSFHSRAST 106

Query: 120 GRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDE 179
           GRLTRSNS+G  RK   SKPRSV SDG L+SPP  GSQ+KKRCAW+TPNT+PCYA FHD+
Sbjct: 107 GRLTRSNSLGCTRKRSVSKPRSVASDGVLESPP-HGSQSKKRCAWITPNTEPCYATFHDK 165

Query: 180 EWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAA 239
           EWGVPVHDDKKLFELLVLS ALSELTWPAILSKRHI  EVF  FDP+A+SK NEKK++A 
Sbjct: 166 EWGVPVHDDKKLFELLVLSSALSELTWPAILSKRHILGEVFADFDPVAISKFNEKKIMAP 225

Query: 240 GSAASSLLSELKLRAIIENARQISKV 265
           GS ASSLLS+LKLRAIIENARQISKV
Sbjct: 226 GSTASSLLSDLKLRAIIENARQISKV 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|15242914|ref|NP_200605.1| DNA-3-methyladenine glycosylase I [Arabidopsis thaliana] gi|79331243|ref|NP_001032091.1| DNA-3-methyladenine glycosylase I [Arabidopsis thaliana] gi|9758366|dbj|BAB08867.1| unnamed protein product [Arabidopsis thaliana] gi|27765038|gb|AAO23640.1| At5g57970 [Arabidopsis thaliana] gi|110742914|dbj|BAE99353.1| hypothetical protein [Arabidopsis thaliana] gi|332009596|gb|AED96979.1| DNA-3-methyladenine glycosylase I [Arabidopsis thaliana] gi|332009597|gb|AED96980.1| DNA-3-methyladenine glycosylase I [Arabidopsis thaliana]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/265 (64%), Positives = 198/265 (74%), Gaps = 6/265 (2%)

Query: 1   MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKTL 60
           MSGA RV+SMNVAE+ETR  LG    K       K  SK  RK+E+S      ++EK + 
Sbjct: 1   MSGAPRVQSMNVAEAETRSTLGSTAKKASPFITHKAVSKSLRKLERSSSGRTGSDEKTSY 60

Query: 61  SPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASIG 120
           +  ++  +  + K     H+L+  SILRRHEQ L SNLSLNAS SSDAS DSFHSRAS G
Sbjct: 61  ATPTETVSSSSQK-----HTLNAASILRRHEQNLNSNLSLNASFSSDASMDSFHSRASTG 115

Query: 121 RLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEE 180
           RL RS SVG R K +PSKPRSVVS+G LDSPP +GS+TKKRC WVTPN+DPCY  FHDEE
Sbjct: 116 RLIRSYSVGSRSKSYPSKPRSVVSEGALDSPP-NGSETKKRCTWVTPNSDPCYIVFHDEE 174

Query: 181 WGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAG 240
           WGVPVHDDK+LFELLVLSGAL+E TWP ILSKR  FREVF  FDP A+ K+NEKK++  G
Sbjct: 175 WGVPVHDDKRLFELLVLSGALAEHTWPTILSKRQAFREVFADFDPNAIVKINEKKIIGPG 234

Query: 241 SAASSLLSELKLRAIIENARQISKV 265
           S AS+LLS+LKLRA+IENARQI KV
Sbjct: 235 SPASTLLSDLKLRAVIENARQILKV 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445871|ref|XP_002276173.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing] [Vitis vinifera] gi|297743642|emb|CBI36525.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/266 (70%), Positives = 207/266 (77%), Gaps = 12/266 (4%)

Query: 1   MSGATRVRSMNVAESETRPVLGPAGNKTG-SLSAWKPASKPSRKIEKSPVEVNAAEEKKT 59
           MSG  RVRSMNVA+SE RPVLGPAGNKT  SLS  KPA+KP RK EK+       EE K 
Sbjct: 1   MSGGPRVRSMNVADSEVRPVLGPAGNKTMRSLSGRKPATKPLRKAEKA---TKDDEEIKA 57

Query: 60  LSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASI 119
           L  S+ AA+ P S             +LRR EQLL SNLSLNASCSSDASTDSFHSRAS 
Sbjct: 58  LPSSNGAASSPPSHSVSVPL------VLRRQEQLLHSNLSLNASCSSDASTDSFHSRAST 111

Query: 120 GRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDE 179
           GR+TRS+S   RR+ + SKP+ +VSDG  +SPP DG + K+RCAWVTPNTD  Y AFHDE
Sbjct: 112 GRITRSSSTA-RRRSYASKPKVIVSDGVSESPP-DGLKAKRRCAWVTPNTDLSYIAFHDE 169

Query: 180 EWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAA 239
           EWGVPVHDDKKLFELLVLSGAL+ELTWP ILSKRHIFREVF  FDPIAV+KLNEKKL+A 
Sbjct: 170 EWGVPVHDDKKLFELLVLSGALAELTWPTILSKRHIFREVFADFDPIAVAKLNEKKLMAP 229

Query: 240 GSAASSLLSELKLRAIIENARQISKV 265
           GS ASSL+SELKLR IIENARQ+SKV
Sbjct: 230 GSIASSLISELKLRGIIENARQMSKV 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|297793315|ref|XP_002864542.1| methyladenine glycosylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297310377|gb|EFH40801.1| methyladenine glycosylase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/266 (63%), Positives = 196/266 (73%), Gaps = 6/266 (2%)

Query: 1   MSGATRVRSMNVAESETRPVLGPAGNKTGS-LSAWKPASKPSRKIEKSPVEVNAAEEKKT 59
           M+ + RV+SMNVAE+E R  +G A  K  +     K  SK  RK+E+S   +  ++EK +
Sbjct: 1   MTSSPRVQSMNVAEAEARSTMGTAAAKKANPFITHKAVSKSLRKLERSSSGLTGSDEKTS 60

Query: 60  LSPSSKAATPPASKLSPKSHSLSVPSILRRHEQLLQSNLSLNASCSSDASTDSFHSRASI 119
            +      T   S  S + H+L+  SILRRHEQ L SNLSLNAS SSDAS DSFHSRAS 
Sbjct: 61  YA----TPTETLSSSSSQKHTLNAASILRRHEQNLNSNLSLNASFSSDASMDSFHSRAST 116

Query: 120 GRLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDE 179
           GRL RS SVG R K +PSKPRSVVS+G LDSPP  GS+TKKRCAWVT N+DPCY  FHDE
Sbjct: 117 GRLIRSYSVGSRSKSYPSKPRSVVSEGALDSPP-SGSETKKRCAWVTSNSDPCYIVFHDE 175

Query: 180 EWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAA 239
           EWGVPVHDDK+LFELLVLSGAL+E TWP ILSKR  FREVF  FDP A+ K+NEKKL+  
Sbjct: 176 EWGVPVHDDKRLFELLVLSGALAEHTWPMILSKRQTFREVFADFDPNAIVKINEKKLIGP 235

Query: 240 GSAASSLLSELKLRAIIENARQISKV 265
           GS AS+LLS+LKLR +IENARQI KV
Sbjct: 236 GSPASTLLSDLKLRGVIENARQILKV 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2174373	347	AT5G57970 [Arabidopsis thalian	0.959	0.746	0.532	9.4e-66
TAIR|locus:2025697	327	AT1G80850 [Arabidopsis thalian	0.651	0.538	0.434	2.5e-39
TAIR|locus:2200447	352	AT1G15970 [Arabidopsis thalian	0.922	0.707	0.398	2.9e-39
TAIR|locus:2037268	329	AT1G75090 [Arabidopsis thalian	0.392	0.322	0.509	1.6e-28
TAIR|locus:2156329	353	AT5G44680 [Arabidopsis thalian	0.396	0.303	0.431	2.1e-23
TAIR|locus:2087710	312	AT3G12710 [Arabidopsis thalian	0.411	0.355	0.415	2.1e-20
TAIR|locus:1006230719	311	AT1G13635 [Arabidopsis thalian	0.414	0.360	0.392	5.7e-20
TIGR_CMR|GSU_0567	191	GSU_0567 "DNA-3-methyladenine	0.385	0.544	0.396	2e-17
TIGR_CMR|CBU_0383	212	CBU_0383 "DNA-3-methyladenine	0.388	0.495	0.392	1.8e-16
UNIPROTKB|P05100	187	tag "3-methyl-adenine DNA glyc	0.396	0.572	0.383	9.8e-16

TAIR|locus:2174373 AT5G57970 [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 141/265 (53%), Positives = 159/265 (60%)

Query:     1 MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKXX 60
             MSGA RV+SMNVAE+ETR  LG    K       K  SK  RK+E+S      ++EK   
Sbjct:     1 MSGAPRVQSMNVAEAETRSTLGSTAKKASPFITHKAVSKSLRKLERSSSGRTGSDEK--- 57

Query:    61 XXXXXXXXXXXXXXXXXXHSLSVPSILRRHEXXXXXXXXXXXXXXXXXXTDSFHSRASIG 120
                               H+L+  SILRRHE                   DSFHSRAS G
Sbjct:    58 --TSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNLSLNASFSSDASMDSFHSRASTG 115

Query:   121 RLTRSNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDEE 180
             RL RS SVG R K +PSKPRSVVS+G LDSPP +GS+TKKRC WVTPN+DPCY  FHDEE
Sbjct:   116 RLIRSYSVGSRSKSYPSKPRSVVSEGALDSPP-NGSETKKRCTWVTPNSDPCYIVFHDEE 174

Query:   181 WGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNXXXXXXXX 240
             WGVPVHDDK+LFELLVLSGAL+E TWP ILSKR  FREVF  FDP A+ K+N        
Sbjct:   175 WGVPVHDDKRLFELLVLSGALAEHTWPTILSKRQAFREVFADFDPNAIVKINEKKIIGPG 234

Query:   241 XXXXXXXXXXXXRAIIENARQISKV 265
                         RA+IENARQI KV
Sbjct:   235 SPASTLLSDLKLRAVIENARQILKV 259

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:2025697 AT1G80850 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 80/184 (43%), Positives = 99/184 (53%)

Query:    84 PSILRRHEXXXXXXXXXXXXXXXXXXTDSFHSRASIGR-LTRSNSVGIRRKPFPSKPRSV 142
             P ILRR+                     S  S +S  R L RS SV        S  R++
Sbjct:    62 PPILRRNGISMTASYSSDASSSCESSPLSMTSTSSGKRVLRRSGSVSSSS----SLRRNL 117

Query:   143 VSDGGLDSPPPDG-SQTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGAL 201
               +   D    D     +KRCAW+TP +D CY AFHDEEWGVPVHDDK+LFELL LSGAL
Sbjct:   118 TEER--DEKASDCFCDGRKRCAWITPKSDQCYIAFHDEEWGVPVHDDKRLFELLSLSGAL 175

Query:   202 SELTWPAILSKRHIFREVFVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENARQ 261
             +EL+W  ILSKR +FREVF+ FDPIA+S+L                     R+I+ENA Q
Sbjct:   176 AELSWKDILSKRQLFREVFMDFDPIAISELTNKKITSPEIAATTLLSEQKLRSILENANQ 235

Query:   262 ISKV 265
             + K+
Sbjct:   236 VCKI 239

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:2200447 AT1G15970 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 106/266 (39%), Positives = 131/266 (49%)

Query:     1 MSGATRVRSMNVAESETRPVLGPAGNKTGSLSAWKPASKPSRKIEKSPVEVNAAEEKKXX 60
             MS   R RS+N  E E R VLGP GNK       KP   P  K+EK  +E    + K   
Sbjct:     1 MSVPPRFRSVNSDEREFRSVLGPTGNKLQR----KP---PGMKLEKPMMEKTIIDSKDEK 53

Query:    61 XXXXXXXXXXXXXXXXXXHSLSVPSILRRHEXXXXXXXXXXXXXXXXXXTDSFHSRASIG 120
                                  S  SILR++                     S  S +S  
Sbjct:    54 AKKPTTPASPRTTLKQCSSLCS--SILRKNSASMTASYSSDASSSCESSPLSVASSSSCK 111

Query:   121 RLTR-SNSVGIRRKPFPSKPRSVVSDGGLDSPPPDGSQTKKRCAWVTPNTDPCYAAFHDE 179
             ++ R S SV   RK    K    VS G   +   DG   +KRCAW+TP  DPCY AFHDE
Sbjct:   112 KVVRRSGSVSSTRKLSVGKEEEKVS-GDCFA---DG---RKRCAWITPKADPCYVAFHDE 164

Query:   180 EWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNXXXXXXX 239
             EWGVPVHDDKKLFELL LSGAL+EL+W  ILS+RHI REVF+ FDP+AV++LN       
Sbjct:   165 EWGVPVHDDKKLFELLCLSGALAELSWTDILSRRHILREVFMDFDPVAVAELNDKKLTAP 224

Query:   240 XXXXXXXXXXXXXRAIIENARQISKV 265
                          R+I++N+R + K+
Sbjct:   225 GTAAISLLSEVKIRSILDNSRHVRKI 250

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

TAIR|locus:2037268 AT1G75090 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 54/106 (50%), Positives = 68/106 (64%)

Query:   160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
             KRC W+TPN+DP Y  FHDEEWGVPV DDKKLFELLV S AL+E +WP+IL +R  FR++
Sbjct:   119 KRCHWITPNSDPIYVLFHDEEWGVPVRDDKKLFELLVFSQALAEFSWPSILRRRDDFRKL 178

Query:   220 FVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENARQISKV 265
             F  FDP A+++                      RAI+ENA+ + KV
Sbjct:   179 FEEFDPSAIAQFTEKRLMSLRVNGCLILSEQKLRAIVENAKSVLKV 224

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:2156329 AT5G44680 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 47/109 (43%), Positives = 66/109 (60%)

Query:   157 QTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIF 216
             + KKRC+++T ++DP Y A+HD+EWGVPVHDD  LFELLVL+GA     W ++L +R+ F
Sbjct:   161 EKKKRCSFITTSSDPIYVAYHDKEWGVPVHDDNLLFELLVLTGAQVGSDWTSVLKRRNTF 220

Query:   217 REVFVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENARQISKV 265
             RE F GF+   V+  N                     A+++NA+QI KV
Sbjct:   221 REAFSGFEAELVADFNEKKIQSIVNDYGINLSQVL--AVVDNAKQILKV 267

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2087710 AT3G12710 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 47/113 (41%), Positives = 67/113 (59%)

Query:   153 PDGSQTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSK 212
             P+ +   +RC+++TP +DP Y A+HDEEWGVPVHDDK LFELL LSGA     W + L K
Sbjct:   115 PNPNPHPQRCSFLTPTSDPIYVAYHDEEWGVPVHDDKTLFELLTLSGAQVGSDWTSTLRK 174

Query:   213 RHIFREVFVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENARQISKV 265
             RH +R+ F+ F+   V+KL                     R ++ENA++I ++
Sbjct:   175 RHDYRKAFMEFEAEVVAKLTEKEMNAISIEYKIEMSKV--RGVVENAKKIVEI 225

GO:0003824 "catalytic activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:1006230719 AT1G13635 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 44/112 (39%), Positives = 60/112 (53%)

Query:   154 DGSQTKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKR 213
             + S   KRC W+T  +D  Y  FHD++WGVPV+DD  LFE L +SG L +  W  IL ++
Sbjct:   109 NSSDEPKRCNWITKKSDEVYVMFHDQQWGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRK 168

Query:   214 HIFREVFVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENARQISKV 265
               FRE F  FDP  V+K+                     R I++NA+ I+KV
Sbjct:   169 EHFREAFCEFDPNRVAKMGEKEIAEIASNKAIMLQESRVRCIVDNAKCITKV 220

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA

TIGR_CMR|GSU_0567 GSU_0567 "DNA-3-methyladenine glycosylase I" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 42/106 (39%), Positives = 55/106 (51%)

Query:   160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
             +RC W    TDP Y A+HD EWGVP HDD+ LFE+L+L GA + L+W  IL KR  +R  
Sbjct:     3 QRCEWC--GTDPLYVAYHDGEWGVPAHDDRHLFEMLILEGAQAGLSWLTILRKREAYRRA 60

Query:   220 FVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENARQISKV 265
             F GFD   V+  +                     + I NAR + K+
Sbjct:    61 FAGFDAETVAAWSEADVARLLADPGIVRNRLKIESTIRNARGVLKI 106

GO:0006281 "DNA repair" evidence=ISS

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=ISS

TIGR_CMR|CBU_0383 CBU_0383 "DNA-3-methyladenine glycosidase I" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 42/107 (39%), Positives = 58/107 (54%)

Query:   159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFRE 218
             K+RCAWV+   DP Y  +HD EWGVP++DD+ LFE L+L G  + L+W  IL KR+ +R+
Sbjct:    18 KERCAWVS--NDPLYIHYHDLEWGVPIYDDRLLFEFLILEGMQAGLSWLTILKKRNNYRD 75

Query:   219 VFVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENARQISKV 265
              F  FD   +SK N                    +A I NA+   +V
Sbjct:    76 SFNNFDASIISKYNPRKIDRLLENAGIIRNKLKIQATINNAKAFLEV 122

GO:0006281 "DNA repair" evidence=ISS

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=ISS

UNIPROTKB|P05100 tag "3-methyl-adenine DNA glycosylase I, constitutive" [Escherichia coli K-12 (taxid:83333)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 43/112 (38%), Positives = 58/112 (51%)

Query:   160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
             +RC WV+   DP Y A+HD EWGVP  D KKLFE++ L G  + L+W  +L KR  +R  
Sbjct:     2 ERCGWVSQ--DPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query:   220 FVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENAR---QISKVGYP 268
             F  FDP+ V+ +                     +AII NAR   Q+ + G P
Sbjct:    60 FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEP 111

GO:0006284 "base-excision repair" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.2.20	LOW CONFIDENCE prediction!
3rd Layer	3.2.2	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
pfam03352	179	pfam03352, Adenine_glyco, Methyladenine glycosylas	3e-45
COG2818	188	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA	3e-28
TIGR00624	179	TIGR00624, tag, DNA-3-methyladenine glycosylase I	1e-22
PRK10353	187	PRK10353, PRK10353, 3-methyl-adenine DNA glycosyla	2e-22

>gnl|CDD|190612 pfam03352, Adenine_glyco, Methyladenine glycosylase

 Score =  149 bits (380), Expect = 3e-45
 Identities = 51/102 (50%), Positives = 63/102 (61%), Gaps = 2/102 (1%)

Query: 164 WVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGF 223
           W T  +DP Y A+HDEEWGVPVHDD+KLFELL L G  + L+W  IL KR  FRE F GF
Sbjct: 1   WAT--SDPLYVAYHDEEWGVPVHDDRKLFELLCLEGFQAGLSWITILKKREAFREAFAGF 58

Query: 224 DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKV 265
           DP  V+   E  +    +    + + LK+ A I NAR I K+
Sbjct: 59  DPEKVAAFTEADVERLLADPGIIRNRLKIEATINNARAILKL 100

The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA. Length = 179

>gnl|CDD|225374 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]

 Score =  106 bits (267), Expect = 3e-28
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 161 RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVF 220
           RCAW     DP Y A+HD EWGVP+HDD++LFELL L G  + L+W  +L KR  FRE F
Sbjct: 3   RCAWA-GGLDPLYLAYHDTEWGVPLHDDQRLFELLCLEGFQAGLSWLTVLKKREAFREAF 61

Query: 221 VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKV 265
            GFDP  V+ + E+ +    + A  + +  K++A I NAR + ++
Sbjct: 62  HGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLEL 106

Length = 188

>gnl|CDD|129711 TIGR00624, tag, DNA-3-methyladenine glycosylase I

 Score = 91.5 bits (227), Expect = 1e-22
 Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 161 RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVF 220
           RC W   + DP Y A+HD EWGVP+ D   LFE + L G  + L+W  +L KR  +R  F
Sbjct: 2   RCGWA--SVDPLYRAYHDNEWGVPLRDSVALFERMSLEGFQAGLSWITVLRKRENYRRAF 59

Query: 221 VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260
            GFD + V+++ +  +         + +  K+ A I NAR
Sbjct: 60  SGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANAR 99

All proteins in this family are alkylation DNA glycosylases that function in base excision repair This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 179

>gnl|CDD|182401 PRK10353, PRK10353, 3-methyl-adenine DNA glycosylase I; Provisional

 Score = 91.2 bits (226), Expect = 2e-22
 Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 2/101 (1%)

Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
           +RC WV+   DP Y A+HD EWGVP  D KKLFE++ L G  + L+W  +L KR  +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 220 FVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260
           F  FDP+ V+ + E+ +      A  +    K++AII NAR
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNAR 100

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
PRK10353	187	3-methyl-adenine DNA glycosylase I; Provisional	100.0
TIGR00624	179	tag DNA-3-methyladenine glycosylase I. This family	100.0
COG2818	188	Tag 3-methyladenine DNA glycosylase [DNA replicati	100.0
PF03352	179	Adenine_glyco: Methyladenine glycosylase; InterPro	100.0
cd00056	158	ENDO3c endonuclease III; includes endonuclease III	94.04
PF00730	108	HhH-GPD: HhH-GPD superfamily base excision DNA rep	91.33
PRK10702	211	endonuclease III; Provisional	91.17
TIGR01083	191	nth endonuclease III. This equivalog model identif	89.69
TIGR03252	177	uncharacterized HhH-GPD family protein. This model	88.22
PRK13913	218	3-methyladenine DNA glycosylase; Provisional	87.19
smart00478	149	ENDO3c endonuclease III. includes endonuclease III	85.15
PRK10880	350	adenine DNA glycosylase; Provisional	82.72

>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional

Probab=100.00  E-value=1e-51  Score=361.68  Aligned_cols=107  Identities=40%  Similarity=0.758  Sum_probs=104.9

Q ss_pred             CCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 024277          160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAA  239 (270)
Q Consensus       160 ~RC~Wat~~sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~L  239 (270)
                      .||.|++  +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||++|||++||+|+|++|++|
T Consensus         2 ~rC~W~~--~~~l~~~YHD~eWG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~L   79 (187)
T PRK10353          2 ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERL   79 (187)
T ss_pred             CCCCCCC--CChHHHHhhhccCCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHH
Confidence            6999996  79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhcchhHHHHHHHHHHHHHHhccc
Q 024277          240 GSAASSLLSELKLRAIIENARQISKVGYP  268 (270)
Q Consensus       240 l~d~~IIRNr~KI~AVI~NArailkI~~~  268 (270)
                      |+|++|||||+||+|||+||+++++|+++
T Consensus        80 l~d~~IIRnr~KI~Avi~NA~~~l~i~~e  108 (187)
T PRK10353         80 VQDAGIIRHRGKIQAIIGNARAYLQMEQN  108 (187)
T ss_pred             hcCchhHHhHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999875

>TIGR00624 tag DNA-3-methyladenine glycosylase I

Probab=100.00  E-value=2.3e-51  Score=357.29  Aligned_cols=107  Identities=35%  Similarity=0.675  Sum_probs=104.3

Q ss_pred             CCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 024277          160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAA  239 (270)
Q Consensus       160 ~RC~Wat~~sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~L  239 (270)
                      .||.|++  ++|+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||.|+|++|++|
T Consensus         1 ~rC~W~~--~~~l~~~YHD~eWG~p~~dd~~LFE~L~Le~fQAGLSW~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L   78 (179)
T TIGR00624         1 VRCGWAS--VDPLYRAYHDNEWGVPLRDSVALFERMSLEGFQAGLSWITVLRKRENYRRAFSGFDIVKVARMTDADVERL   78 (179)
T ss_pred             CCCCCcC--CChHHHHhhhccCCCcCcCCHHHHHHHHHHHHhCcCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHH
Confidence            4899996  79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhcchhHHHHHHHHHHHHHHhccc
Q 024277          240 GSAASSLLSELKLRAIIENARQISKVGYP  268 (270)
Q Consensus       240 l~d~~IIRNr~KI~AVI~NArailkI~~~  268 (270)
                      |+|++|||||+||+|||+||+++++|+++
T Consensus        79 ~~d~~IIRnr~KI~Avi~NA~~~l~i~~e  107 (179)
T TIGR00624        79 LQDDGIIRNRGKIEATIANARAALQLEQN  107 (179)
T ss_pred             hcCccchhhHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]

Probab=100.00  E-value=9.5e-50  Score=349.71  Aligned_cols=109  Identities=43%  Similarity=0.794  Sum_probs=105.4

Q ss_pred             CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 024277          159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA  238 (270)
Q Consensus       159 ~~RC~Wat~~sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~  238 (270)
                      +.||.|+. +.+|+|.+|||+|||+|++||+.|||+||||+|||||||.|||+||++||+||++|||++||.|+|++|++
T Consensus         1 ~~rC~w~~-~~~ply~~YHD~eWG~p~~Dd~~LFE~l~Le~fQAGLSW~tVL~KRe~freaF~~Fd~~kVA~~~~~dver   79 (188)
T COG2818           1 MNRCAWAG-GLDPLYLAYHDTEWGVPLHDDQRLFELLCLEGFQAGLSWLTVLKKREAFREAFHGFDPEKVAAMTEEDVER   79 (188)
T ss_pred             CCcccccC-CCCchhhcccccccCCCCCChHHHHHHHHHHHHhccchHHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHH
Confidence            36999996 34899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccchhhcchhHHHHHHHHHHHHHHhccc
Q 024277          239 AGSAASSLLSELKLRAIIENARQISKVGYP  268 (270)
Q Consensus       239 Ll~d~~IIRNr~KI~AVI~NArailkI~~~  268 (270)
                      ||+|++|||||+||.|||+|||++++|+++
T Consensus        80 Ll~d~gIIR~r~KI~A~i~NA~~~l~l~~e  109 (188)
T COG2818          80 LLADAGIIRNRGKIKATINNARAVLELQKE  109 (188)
T ss_pred             HHhCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876

>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3

Probab=100.00  E-value=4.9e-48  Score=336.35  Aligned_cols=103  Identities=48%  Similarity=0.867  Sum_probs=92.9

Q ss_pred             CCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccc
Q 024277          164 WVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAA  243 (270)
Q Consensus       164 Wat~~sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~  243 (270)
                      |+.  ++|+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|++|++||+|+
T Consensus         1 W~~--~~~~~~~YHD~eWG~P~~dD~~LFe~L~Le~fQaGLsW~~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~   78 (179)
T PF03352_consen    1 WAN--SDPLYRAYHDEEWGRPVHDDRKLFEMLTLEGFQAGLSWSTILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDP   78 (179)
T ss_dssp             TTT--SSHHHHHHHHHTTTSS---HHHHHHHHHHHHHTTTS-HHHHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTST
T ss_pred             CCC--CChHHHHHhcccCCCcccCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCc
Confidence            885  789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcchhHHHHHHHHHHHHHHhccc
Q 024277          244 SSLLSELKLRAIIENARQISKVGYP  268 (270)
Q Consensus       244 ~IIRNr~KI~AVI~NArailkI~~~  268 (270)
                      +|||||+||+|||+||+++++|+++
T Consensus        79 ~iIRnr~KI~Avi~NA~~~l~i~~e  103 (179)
T PF03352_consen   79 GIIRNRRKIRAVINNARAILKIQEE  103 (179)
T ss_dssp             TSS--HHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999875

2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.

>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

Probab=94.04  E-value=0.32  Score=40.03  Aligned_cols=70  Identities=23%  Similarity=0.122  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHHh
Q 024277          192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKV  265 (270)
Q Consensus       192 FE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailkI  265 (270)
                      ||.|+-.++..-.+|..+.+-...|.+.|. .+++.|+..++++|..+...-+   .+.|.+.|++=|+.+.+-
T Consensus         1 ~e~Li~~il~q~~s~~~a~~~~~~l~~~~g-pt~~~l~~~~~~~l~~~~~~~G---~~~kA~~i~~~a~~~~~~   70 (158)
T cd00056           1 FEVLVSEILSQQTTDKAVNKAYERLFERYG-PTPEALAAADEEELRELIRSLG---YRRKAKYLKELARAIVEG   70 (158)
T ss_pred             CHHHHHHHHHhcccHHHHHHHHHHHHHHhC-CCHHHHHCCCHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHH
Confidence            688888888888999999998888888875 7999999999999998766544   478999999888888763

>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4

Probab=91.33  E-value=1.3  Score=34.27  Aligned_cols=63  Identities=22%  Similarity=0.045  Sum_probs=52.2

Q ss_pred             HHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277          199 GALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS  263 (270)
Q Consensus       199 gfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail  263 (270)
                      ++..-.+|..+.+-...|.+.|...+++.|+..++++|.++...  .--++.|-+.|++=|+.++
T Consensus         4 Il~qq~s~~~a~~~~~~l~~~~g~pt~~~l~~~~~~el~~~i~~--~G~~~~ka~~i~~~a~~~~   66 (108)
T PF00730_consen    4 ILSQQTSIKAARKIYRRLFERYGFPTPEALAEASEEELRELIRP--LGFSRRKAKYIIELARAIL   66 (108)
T ss_dssp             HHCTTS-HHHHHHHHHHHHHHHSCSSHHHHHCSHHHHHHHHHTT--STSHHHHHHHHHHHHHHHH
T ss_pred             eecCcCcHHHHHHHHHHHHHHhcCCCHHHHHhCCHHHHHHHhhc--cCCCHHHHHHHHHHHHHhh
Confidence            44556789999999999999999999999999999999998665  3356678888988888875

2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....

>PRK10702 endonuclease III; Provisional

Probab=91.17  E-value=1.7  Score=39.04  Aligned_cols=70  Identities=17%  Similarity=0.095  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      -||.|+-++.-+--+|..|.+--+.|.+.|  .+++.+++.++++|+.+...-|.  .+.|-..+++.|+.+++
T Consensus        29 p~e~lvs~iLsq~t~~~~v~~~~~~L~~~~--pt~e~l~~a~~~~l~~~i~~~G~--y~~kA~~l~~~a~~i~~   98 (211)
T PRK10702         29 PFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENVIKTCRILLE   98 (211)
T ss_pred             hHHHHHHHHHHhhcCHHHHHHHHHHHHHHc--CCHHHHHCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence            599999999988999999987777666544  48999999999999987665443  34566677888887765

>TIGR01083 nth endonuclease III

Probab=89.69  E-value=2.6  Score=36.71  Aligned_cols=70  Identities=21%  Similarity=0.157  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      -||.|+-++.-.-.+|..+.+--..|.+.|  .+++.|+..++++|++++.--+.  .+.|.+.|++=|+.+++
T Consensus        26 pf~~Li~~ILsqqt~~~~~~~~~~~l~~~~--pt~~~l~~~~~~~L~~~ir~~G~--~~~Ka~~i~~~a~~i~~   95 (191)
T TIGR01083        26 PFELLVATILSAQATDKSVNKATKKLFEVY--PTPQALAQAGLEELEEYIKSIGL--YRNKAKNIIALCRILVE   95 (191)
T ss_pred             HHHHHHHHHHHhhCcHHHHHHHHHHHHHHC--CCHHHHHcCCHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHH
Confidence            599999999988999999988777776655  48999999999999887655443  45677777777777654

This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>TIGR03252 uncharacterized HhH-GPD family protein

Probab=88.22  E-value=4.1  Score=36.49  Aligned_cols=73  Identities=14%  Similarity=0.081  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHH-HHHhcCCCHHHHhcCCHHHHHHhccc-chhhc-chhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIF-REVFVGFDPIAVSKLNEKKLLAAGSA-ASSLL-SELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~F-ReAF~gFDp~kVA~~~E~~Ie~Ll~d-~~IIR-Nr~KI~AVI~NArailk  264 (270)
                      -||+|+--+.-+--+|..+.+--+.+ +++|. .||+.|+.++.++|++++.. +++.+ .+.|=+-|++=|+.|++
T Consensus        18 pFelLVa~ILSQqTtd~nv~kA~~~L~~~~g~-~tp~~La~a~~eeL~~lI~~~pal~Gfy~~KAk~Lk~~a~~iie   93 (177)
T TIGR03252        18 PFALLTGMLLDQQVPMERAFAGPHKIARRMGS-LDAEDIAKYDPQAFVALFSERPAVHRFPGSMAKRVQALAQYVVD   93 (177)
T ss_pred             hHHHHHHHHHhccCcHHHHHHHHHHHHHHhCC-CCHHHHHcCCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHH
Confidence            49999999999999999988666555 44554 89999999999999988753 33222 34666666666666653

This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).

>PRK13913 3-methyladenine DNA glycosylase; Provisional

Probab=87.19  E-value=5  Score=36.65  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhc-----CCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFV-----GFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~-----gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      -||.|+-.+.-.--+|..+.+-=+.+++.|.     .-+++.|+.+++++|+++....|  -.++|.+.+.+=|+.+++
T Consensus        30 ~fevLV~aILsQqT~~~~v~~a~~~L~~~~~~~~~~~~t~e~L~~a~~eeL~~~Irp~G--f~~~KA~~Lk~la~~i~~  106 (218)
T PRK13913         30 KFEALLGAVLTQNTKFEAVEKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSG--FYNQKAKRLIDLSENILK  106 (218)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccccCCCHHHHHcCCHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH
Confidence            3898888887777889888877666766653     23899999999999999877655  456777778777777754

>smart00478 ENDO3c endonuclease III

Probab=85.15  E-value=3.5  Score=33.71  Aligned_cols=57  Identities=19%  Similarity=0.152  Sum_probs=46.2

Q ss_pred             CCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          204 LTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       204 LSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      .+|..+.+--..|.+.|-  +|+.|+..++++|.+++..-+  ..+.|.+.|++.|+.+.+
T Consensus         5 ~~~~~a~~~~~~l~~~~~--~~~~l~~~~~~eL~~~l~~~g--~~~~ka~~i~~~a~~~~~   61 (149)
T smart00478        5 TSDEAVNKATERLFEKFP--TPEDLAAADEEELEELIRPLG--FYRRKAKYLIELARILVE   61 (149)
T ss_pred             ccHHHHHHHHHHHHHHCC--CHHHHHCCCHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHH
Confidence            577888888888888876  799999999999988765522  456799999999988765

includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

>PRK10880 adenine DNA glycosylase; Provisional

Probab=82.72  E-value=8.7  Score=37.36  Aligned_cols=69  Identities=10%  Similarity=0.121  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      -|+.|+-|++..--+|.+++.--+.|.+.|  .|++.+|..++++|..+..--|.-  + |.+-+.+-|+.+.+
T Consensus        30 py~ilVseILlQQT~v~~v~~~~~rl~~~f--Pt~~~La~a~~eel~~~~~glGyy--~-RAr~L~~~A~~i~~   98 (350)
T PRK10880         30 PYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY--A-RARNLHKAAQQVAT   98 (350)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHC--cCHHHHHCcCHHHHHHHHHcCChH--H-HHHHHHHHHHHHHH
Confidence            489999999999999999999888888876  579999999999999877665653  2 66667777776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
1lmz_A	187	Solution Structure Of 3-Methyladenine Dna Glycosyla		2e-16
2ofk_A	183	Crystal Structure Of 3-Methyladenine Dna Glycosylas		1e-15
2ofi_A	184	Crystal Structure Of 3-Methyladenine Dna Glycosylas		9e-15
4ai5_A	188	Crystal Structure Of Y16f Of 3-Methyladenine Dna Gl		2e-10
4ai4_A	188	Crystal Structure Of E38q Mutant Of 3-Methyladenine		3e-10
4aia_A	188	The Structural Basis Of 3-Methyladenine Recognition		4e-10
2jg6_A	186	Crystal Structure Of A 3-Methyladenine Dna Glycosyl		4e-10

>pdb|1LMZ|A Chain A, Solution Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 187

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
           +RC WV+   DP Y A+HD EWGVP  D KKLFE++ L G  + L+W  +L KR  +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 220 FVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENAR---QISKVGYP 268
           F  FDP+ V+ +                     +AII NAR   Q+ + G P
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEP 111

>pdb|2OFK|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 183

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
           +RC WV+   DP Y A+HD EWGVP  D +KLFE++ L G  + L+W  +L KR  +R  
Sbjct: 2   QRCDWVSQ--DPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 220 FVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENAR 260
           F  FDPI ++ +                     +AII NAR
Sbjct: 60  FHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNAR 100

>pdb|2OFI|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Bound To Dna3MA Length = 184

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
           +RC WV+   DP Y A+HD EWGVP  D +KLFE + L G  + L+W  +L KR  +R  
Sbjct: 2   QRCDWVSQ--DPLYIAYHDNEWGVPETDSRKLFEXICLEGQQAGLSWITVLKKRENYRAC 59
Query: 220 FVGFDPIAVSKLNXXXXXXXXXXXXXXXXXXXXRAIIENAR 260
           F  FDPI ++                       +AII NAR
Sbjct: 60  FHQFDPIRIAAXQEEDVERLLQNTGIIRHRGKIQAIISNAR 100

>pdb|4AI5|A Chain A, Crystal Structure Of Y16f Of 3-Methyladenine Dna Glycosylase I (Tag) In Complex With 3-Methyladenine Length = 188

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 161 RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVF 220
            CA+ T   DP Y  FHD  WG P++D K LF+LL L    + L+W  IL K+  + E F
Sbjct: 5   ECAFGTK--DPVYLNFHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF 62
Query: 221 VGFDPIAVSKL 231
             F+P  V+++
Sbjct: 63  YDFEPEKVAQM 73

>pdb|4AI4|A Chain A, Crystal Structure Of E38q Mutant Of 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 161 RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVF 220
            CA+ T   DP Y  +HD  WG P++D K LF+LL L    + L+W  IL K+  + E F
Sbjct: 5   ECAFGTK--DPVYLNYHDHVWGQPLYDSKALFKLLALQSQHAGLSWLTILKKKEAYEEAF 62
Query: 221 VGFDPIAVSKL 231
             F+P  V+++
Sbjct: 63  YDFEPEKVAQM 73

>pdb|4AIA|A Chain A, The Structural Basis Of 3-Methyladenine Recognition By 3-Methyladenine Dna Glycosylase I (Tag) From Staphylococcus Aureus Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 161 RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVF 220
            CA+ T   DP Y  +HD  WG P++D K LF+LL L    + L+W  IL K+  + E F
Sbjct: 5   ECAFGTK--DPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF 62
Query: 221 VGFDPIAVSKL 231
             F+P  V+++
Sbjct: 63  YDFEPEKVAQM 73

>pdb|2JG6|A Chain A, Crystal Structure Of A 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 186

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 161 RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVF 220
            CA+ T   DP Y  +HD  WG P++D K LF+LL L    + L+W  IL K+  + E F
Sbjct: 3   ECAFGTK--DPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF 60
Query: 221 VGFDPIAVSKL 231
             F+P  V+++
Sbjct: 61  YDFEPEKVAQM 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
2jg6_A	186	DNA-3-methyladenine glycosidase; 3-methyladenine-D	2e-50
2ofk_A	183	3-methyladenine DNA glycosylase I, constitutive; D	2e-50

>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Length = 186

 Score =  163 bits (414), Expect = 2e-50
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
             CA+ T   DP Y  +HD  WG P++D K LF+LL L    + L+W  IL K+  + E 
Sbjct: 2   NECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEA 59

Query: 220 FVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKV 265
           F  F+P  V+++  + +    +  + +    KL AI+  A+   K+
Sbjct: 60  FYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKI 105

>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Length = 183

 Score =  162 bits (413), Expect = 2e-50
 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
           +RC WV+   DP Y A+HD EWGVP  D +KLFE++ L G  + L+W  +L KR  +R  
Sbjct: 2   QRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 220 FVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKV 265
           F  FDPI ++ + E+ +         +    K++AII NAR    +
Sbjct: 60  FHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAM 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
2jg6_A	186	DNA-3-methyladenine glycosidase; 3-methyladenine-D	100.0
2ofk_A	183	3-methyladenine DNA glycosylase I, constitutive; D	100.0
2h56_A	233	DNA-3-methyladenine glycosidase; 10174367, EC 3.2.	95.7
1orn_A	226	Endonuclease III; DNA repair, DNA glycosylase, [4F	95.54
2yg9_A	225	DNA-3-methyladenine glycosidase II, putative; hydr	95.39
3n0u_A	219	Probable N-glycosylase/DNA lyase; structural genom	95.27
2abk_A	211	Endonuclease III; DNA-repair, DNA glycosylase; 1.8	94.65
1kea_A	221	Possible G-T mismatches repair enzyme; DNA repair,	94.55
1kg2_A	225	A/G-specific adenine glycosylase; DNA repair, hydr	94.01
4b21_A	232	Probable DNA-3-methyladenine glycosylase 2; hydrol	93.5
3s6i_A	228	DNA-3-methyladenine glycosylase 1; DNA glycosylase	93.31
3n5n_X	287	A/G-specific adenine DNA glycosylase; alpha-helice	92.41
1pu6_A	218	3-methyladenine DNA glycosylase; helix-hairpin-hel	92.08
3i0w_A	290	8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-	91.82
4e9f_A	161	Methyl-CPG-binding domain protein 4; HHH DNA glyco	91.42
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	90.94
3fhg_A	207	Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel	90.53
2jhn_A	295	ALKA, 3-methyladenine DNA-glycosylase; DNA repair,	87.89
1mpg_A	282	ALKA, 3-methyladenine DNA glycosylase II; DNA repa	86.64
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	86.3
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	84.03
2es6_A	101	VTS1P; SAM domain, protein structure, gene regulat	81.54
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	80.83
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	80.35

>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A

Probab=100.00  E-value=4.3e-54  Score=375.57  Aligned_cols=108  Identities=31%  Similarity=0.594  Sum_probs=105.3

Q ss_pred             CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 024277          159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA  238 (270)
Q Consensus       159 ~~RC~Wat~~sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~  238 (270)
                      ++||.|++  ++|+|++|||+|||+|+|||++|||+||||||||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus         1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~   78 (186)
T 2jg6_A            1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR   78 (186)
T ss_dssp             CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            47999996  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccchhhcchhHHHHHHHHHHHHHHhccc
Q 024277          239 AGSAASSLLSELKLRAIIENARQISKVGYP  268 (270)
Q Consensus       239 Ll~d~~IIRNr~KI~AVI~NArailkI~~~  268 (270)
                      ||+|++|||||+||+|||+||+++++|+++
T Consensus        79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e  108 (186)
T 2jg6_A           79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQA  108 (186)
T ss_dssp             HTTCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999864

>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*

Probab=100.00  E-value=5.3e-54  Score=374.03  Aligned_cols=108  Identities=38%  Similarity=0.729  Sum_probs=105.0

Q ss_pred             CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 024277          159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA  238 (270)
Q Consensus       159 ~~RC~Wat~~sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~  238 (270)
                      ++||.|++  ++|+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus         1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~   78 (183)
T 2ofk_A            1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER   78 (183)
T ss_dssp             -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence            46999996  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccchhhcchhHHHHHHHHHHHHHHhccc
Q 024277          239 AGSAASSLLSELKLRAIIENARQISKVGYP  268 (270)
Q Consensus       239 Ll~d~~IIRNr~KI~AVI~NArailkI~~~  268 (270)
                      ||+|++|||||+||+|||+||+++++|+++
T Consensus        79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e  108 (183)
T 2ofk_A           79 LLQNTGIIRHRGKIQAIISNARAWLAMEQN  108 (183)
T ss_dssp             HTTCTTSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999875

>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}

Probab=95.70  E-value=0.032  Score=48.80  Aligned_cols=90  Identities=17%  Similarity=0.141  Sum_probs=70.1

Q ss_pred             CChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCC--CHHHHhcCCHHHHHHhcccchhh
Q 024277          169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGF--DPIAVSKLNEKKLLAAGSAASSL  246 (270)
Q Consensus       169 sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gF--Dp~kVA~~~E~~Ie~Ll~d~~II  246 (270)
                      .|+.+....+..-|.+....+-.||.|+-.+...-.+|..+.+-...|.+.|..+  +|+.|+..++++|..      +-
T Consensus        29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~------~G  102 (233)
T 2h56_A           29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQ------AG  102 (233)
T ss_dssp             TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHH------TT
T ss_pred             cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHH------cC
Confidence            4666655544444443333344899999999999999999999999999999777  999999999999833      23


Q ss_pred             cchhHHHHHHHHHHHHHH
Q 024277          247 LSELKLRAIIENARQISK  264 (270)
Q Consensus       247 RNr~KI~AVI~NArailk  264 (270)
                      -.++|.+.|++=|+.+.+
T Consensus       103 ~~~~KA~~I~~~A~~i~~  120 (233)
T 2h56_A          103 VSKRKIEYIRHVCEHVES  120 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            567889999999988754

>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*

Probab=95.54  E-value=0.1  Score=45.44  Aligned_cols=70  Identities=16%  Similarity=0.035  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      .||.|+-+++..-.+|..+..-...|.+.|  .+++.|+..++++|++++..-+.  .+.|.+.|++=|+.+.+
T Consensus        33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~i~~  102 (226)
T 1orn_A           33 PFELLIAVVLSAQCTDALVNKVTKRLFEKY--RTPHDYIAVPLEELEQDIRSIGL--YRNKARNIQKLCAMLID  102 (226)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--CSHHHHHSSCHHHHHHHTGGGSS--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHC--CCHHHHHcCCHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHH
Confidence            699999999999999999998888887777  48999999999999998876664  44677788888887764

>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A

Probab=95.39  E-value=0.046  Score=47.68  Aligned_cols=90  Identities=22%  Similarity=0.115  Sum_probs=71.6

Q ss_pred             CChhhhhhhhcCCCc-cccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhc
Q 024277          169 TDPCYAAFHDEEWGV-PVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL  247 (270)
Q Consensus       169 sdply~~YHD~EWG~-PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIR  247 (270)
                      .||.+....+..-|. +.....-.||.|+-.+.-.-.+|..+.+-...|.+.|...+++.|+..++++|..+      --
T Consensus        38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~~------G~  111 (225)
T 2yg9_A           38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRGV------GL  111 (225)
T ss_dssp             TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHHT------TC
T ss_pred             cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHHC------CC
Confidence            688776666655454 33344458999999999999999999998888888887789999999999988432      24


Q ss_pred             chhHHHHHHHHHHHHHH
Q 024277          248 SELKLRAIIENARQISK  264 (270)
Q Consensus       248 Nr~KI~AVI~NArailk  264 (270)
                      .+.|.+.|++=|+.+.+
T Consensus       112 ~~~KA~~i~~lA~~~~~  128 (225)
T 2yg9_A          112 SWAKVRTVQAAAAAAVS  128 (225)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHh
Confidence            57899999999988864

>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}

Probab=95.27  E-value=0.023  Score=49.87  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=57.2

Q ss_pred             ChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhc-chhHHHHHHHHHHHH
Q 024277          187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL-SELKLRAIIENARQI  262 (270)
Q Consensus       187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIR-Nr~KI~AVI~NArai  262 (270)
                      .+.-.||.|+..++.+..+|..+.+-.+.|        |+.++.+++++|++++...+ +| ++.|.+.|+++|+.+
T Consensus        46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i  113 (219)
T 3n0u_A           46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL  113 (219)
T ss_dssp             CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT
T ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH
Confidence            567799999999999999999887644444        78899999999999888777 45 789999999999875

>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1

Probab=94.65  E-value=0.08  Score=45.29  Aligned_cols=71  Identities=18%  Similarity=0.098  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          190 KLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       190 ~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      -.||.|+-+++..-.+|..+..-.+.|.+.|  .+++.|+..++++|+.++..-+.  .+.|.+.|++=|+.+.+
T Consensus        28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~~~~   98 (211)
T 2abk_A           28 SPFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENIIKTCRILLE   98 (211)
T ss_dssp             SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH
Confidence            3799999999999999999877666554443  46999999999999988766554  56788888888888765

>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2

Probab=94.55  E-value=0.16  Score=43.83  Aligned_cols=70  Identities=13%  Similarity=0.010  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      .||.|+-+++..-.+|..+..-...|.+.|  .+|+.|+..++++|++++..-+.  .+.|.+.+++=|+.+.+
T Consensus        35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~--~~~KA~~l~~~a~~i~~  104 (221)
T 1kea_A           35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGL--SNQRAEQLKELARVVIN  104 (221)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Confidence            799999999999999999999888888876  68999999999999988776554  46788888888888765

>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A

Probab=94.01  E-value=0.13  Score=44.39  Aligned_cols=69  Identities=10%  Similarity=0.115  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      .||.|+-+++..-.+|..+..-.+.|.+.|  .+++.|+..++++|+++...-+.-   .|.+.|++=|+.+.+
T Consensus        30 pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~---~kA~~l~~~a~~i~~   98 (225)
T 1kg2_A           30 PYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY---ARARNLHKAAQQVAT   98 (225)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH---HHHHHHHHHHHHHHH
Confidence            699999999999999999987666666555  479999999999999887766654   288888888888764

>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*

Probab=93.50  E-value=0.34  Score=42.51  Aligned_cols=90  Identities=17%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             CChhhhhhhhcCCCc--cccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC---C-CHHHHhcCCHHHHHHhccc
Q 024277          169 TDPCYAAFHDEEWGV--PVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG---F-DPIAVSKLNEKKLLAAGSA  242 (270)
Q Consensus       169 sdply~~YHD~EWG~--PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g---F-Dp~kVA~~~E~~Ie~Ll~d  242 (270)
                      .||.+..-.+..-|.  |....+-.||.|+-.+.-.-.+|..+.+-...|.+.|..   | +|+.|+..++++|..    
T Consensus        36 ~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~----  111 (232)
T 4b21_A           36 IDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHE----  111 (232)
T ss_dssp             TCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHT----
T ss_pred             hCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHH----
Confidence            477665555544442  222223379999999999999999999999999999975   5 999999999998743    


Q ss_pred             chhhcchhHHHHHHHHHHHHHH
Q 024277          243 ASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       243 ~~IIRNr~KI~AVI~NArailk  264 (270)
                        +-..++|.+.|++=|+++.+
T Consensus       112 --~Gl~~~Ka~~l~~~A~~~~~  131 (232)
T 4b21_A          112 --CGFSKLKSQEIHIVAEAALN  131 (232)
T ss_dssp             --TTCCHHHHHHHHHHHHHHHT
T ss_pred             --cCCcHHHHHHHHHHHHHHHh
Confidence              23467899999888888764

>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}

Probab=93.31  E-value=0.33  Score=42.37  Aligned_cols=89  Identities=16%  Similarity=0.095  Sum_probs=68.9

Q ss_pred             CChhhhhhhhcCCCcccc--ChH-HHHHHHHHHHHhcCCCHHHHHHhHHHHHHHh---cCC-CHHHHhcCCHHHHHHhcc
Q 024277          169 TDPCYAAFHDEEWGVPVH--DDK-KLFELLVLSGALSELTWPAILSKRHIFREVF---VGF-DPIAVSKLNEKKLLAAGS  241 (270)
Q Consensus       169 sdply~~YHD~EWG~Pvh--DDr-~LFE~L~LEgfQAGLSW~tILkKRe~FReAF---~gF-Dp~kVA~~~E~~Ie~Ll~  241 (270)
                      .||.+..-.+..-|..+.  ..+ -.||.|+-.+...-.||..+.+-...| +.|   ..| +++.|+..++++|..   
T Consensus        25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr~---  100 (228)
T 3s6i_A           25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMRA---  100 (228)
T ss_dssp             SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHHH---
T ss_pred             hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHHH---
Confidence            588777666655454432  122 479999999999999999999999999 888   345 999999999998843   


Q ss_pred             cchhhcchhHHHHHHHHHHHHHH
Q 024277          242 AASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       242 d~~IIRNr~KI~AVI~NArailk  264 (270)
                         +--.++|.+.|++=|+.+.+
T Consensus       101 ---~G~~~rKa~~i~~~A~~~~~  120 (228)
T 3s6i_A          101 ---CGFSARKIDSLKSIAEATIS  120 (228)
T ss_dssp             ---HTCCHHHHHHHHHHHHHHHH
T ss_pred             ---cCCCHHHHHHHHHHHHHHHc
Confidence               33567899999988888763

>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}

Probab=92.41  E-value=0.55  Score=42.89  Aligned_cols=72  Identities=10%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          188 DKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       188 Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      .+-.||.|+-+++-.-.+|..+..-...|.+.|-  +++.|+..++++|+++...-|.-  + |.+.|++=|+.+++
T Consensus        46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~--~-KA~~L~~~A~~i~~  117 (287)
T 3n5n_X           46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYY--S-RGRRLQEGARKVVE  117 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCH--H-HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCH--H-HHHHHHHHHHHHHH
Confidence            4678999999999999999999988888888774  89999999999999988766654  3 78888888888765

>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*

Probab=92.08  E-value=0.66  Score=40.06  Aligned_cols=72  Identities=17%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHH-hcCCC----HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREV-FVGFD----PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReA-F~gFD----p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      -||.|+-.++..-.+|..+.+-...|.+. |-..+    ++.|+..++++|++++..-+  -.+.|.+.|++=|+.+.+
T Consensus        30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G--~~~~KA~~L~~~a~~i~~  106 (218)
T 1pu6_A           30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSG--FYNQKAKRLIDLSGNILK  106 (218)
T ss_dssp             SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHH
Confidence            59999999999999999998877777766 54322    99999999999998876655  346677888888877754

>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A

Probab=91.82  E-value=1.1  Score=40.43  Aligned_cols=88  Identities=16%  Similarity=0.127  Sum_probs=69.1

Q ss_pred             CChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHHH
Q 024277          169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAVSKLNEKKL  236 (270)
Q Consensus       169 sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g-----------F-Dp~kVA~~~E~~I  236 (270)
                      .||.+..-.+.-.|..+.. +-.||.|+-.+.-.-.+|..+.+-...|.+.|..           | +|+.|+..+++++
T Consensus        94 ~Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L  172 (290)
T 3i0w_A           94 RDPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDF  172 (290)
T ss_dssp             TSHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHH
T ss_pred             hCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHH
Confidence            3666665555566766654 5689999999999999999999999999998753           5 9999999999999


Q ss_pred             HHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          237 LAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       237 e~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      ..+.    +-   .|.+.|+.=|+++.+
T Consensus       173 ~~~g----~g---~Ra~~I~~~A~~i~~  193 (290)
T 3i0w_A          173 EECT----AG---FRAKYLKDTVDRIYN  193 (290)
T ss_dssp             HHTT----CG---GGHHHHHHHHHHHHT
T ss_pred             HHcC----Cc---hHHHHHHHHHHHHHh
Confidence            8742    21   178888888887753

>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A

Probab=91.42  E-value=0.78  Score=38.44  Aligned_cols=68  Identities=9%  Similarity=0.044  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277          192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS  263 (270)
Q Consensus       192 FE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail  263 (270)
                      |+.|+-+++.+--+|.+|..--+.|.+.|-  +++.+|..++++|+.+...-|.-++  |-+.|++-|+.++
T Consensus        32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~--KAk~i~~~a~~~v   99 (161)
T 4e9f_A           32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDL--RAKTIVKFSDEYL   99 (161)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHH--HHHHHHHHhCCcC
Confidence            899999999999999999876666655553  8999999999999999887766544  5556777777654

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=90.94  E-value=1  Score=41.30  Aligned_cols=72  Identities=14%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          188 DKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       188 Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      .+--||.|+-+++..-.+|.++..-...|.+.|  .+++.++..++++|+.+...-+.-  + |.+.+++=|+.+.+
T Consensus        36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~  107 (369)
T 3fsp_A           36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT  107 (369)
T ss_dssp             CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH
Confidence            344799999999999999999998888887776  589999999999999887766653  4 78888888888865

>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}

Probab=90.53  E-value=0.78  Score=39.21  Aligned_cols=69  Identities=13%  Similarity=0.119  Sum_probs=57.1

Q ss_pred             ChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277          187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS  263 (270)
Q Consensus       187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail  263 (270)
                      ..+-.||.|+-+++-.-.+|..+.+-.+.|        ++.++..++++|++++...++--.+.|.+.+.+-|+.+.
T Consensus        29 ~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~   97 (207)
T 3fhg_A           29 NEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVY   97 (207)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHT
T ss_pred             CcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            567799999999999999999998877776        588999999999987765554356789999998888553

>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A

Probab=87.89  E-value=1.2  Score=40.00  Aligned_cols=87  Identities=17%  Similarity=0.133  Sum_probs=66.2

Q ss_pred             CChhhhhhhhcCCCccccC--hHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHH
Q 024277          169 TDPCYAAFHDEEWGVPVHD--DKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAVSKLNEK  234 (270)
Q Consensus       169 sdply~~YHD~EWG~PvhD--Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g-----------F-Dp~kVA~~~E~  234 (270)
                      .||.+..-.+..-|..+.-  ..-.||.|+-.+...-.+|..+.+-...|.+.|..           | +++.|+..+++
T Consensus        94 ~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~  173 (295)
T 2jhn_A           94 GDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVE  173 (295)
T ss_dssp             TSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHH
Confidence            4666665555555655543  45589999999999999999999999999999864           4 79999999988


Q ss_pred             HHHHhcccchhhcchhHHHHHHHHHHH
Q 024277          235 KLLAAGSAASSLLSELKLRAIIENARQ  261 (270)
Q Consensus       235 ~Ie~Ll~d~~IIRNr~KI~AVI~NAra  261 (270)
                      +|..+      --.++|.+.|+.=|++
T Consensus       174 ~Lr~~------G~~~rKa~~i~~~A~~  194 (295)
T 2jhn_A          174 GLREC------GLSRRKAELIVEIAKE  194 (295)
T ss_dssp             HHHHT------TCCHHHHHHHHHHHTC
T ss_pred             HHHHc------CCCHHHHHHHHHHHHC
Confidence            87433      2467788888777654

>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*

Probab=86.64  E-value=3.4  Score=36.63  Aligned_cols=78  Identities=14%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             CCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC----------C-CHHHHhcCCHHHHHHhcccchhhcch
Q 024277          181 WGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG----------F-DPIAVSKLNEKKLLAAGSAASSLLSE  249 (270)
Q Consensus       181 WG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g----------F-Dp~kVA~~~E~~Ie~Ll~d~~IIRNr  249 (270)
                      .|..+....-.||.|+-.+...-.+|..+.+-...|.+.|..          | +++.|+..++++|..+      --.+
T Consensus       103 ~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~Lr~~------G~~~  176 (282)
T 1mpg_A          103 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKAL------GMPL  176 (282)
T ss_dssp             TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHT------TSCH
T ss_pred             CCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHHHHc------CCCH
Confidence            454444445589999999999999999999999999988743          4 7999999999998432      3457


Q ss_pred             hHHHHHHHHHHHHHH
Q 024277          250 LKLRAIIENARQISK  264 (270)
Q Consensus       250 ~KI~AVI~NArailk  264 (270)
                      .|.+.|+.=|+++.+
T Consensus       177 ~ra~~i~~~A~~~~~  191 (282)
T 1mpg_A          177 KRAEALIHLANAALE  191 (282)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            888899988888864

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A

Probab=86.30  E-value=1.2  Score=34.69  Aligned_cols=49  Identities=18%  Similarity=0.196  Sum_probs=40.9

Q ss_pred             HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      +-|.+.|.+.+.+.+..++|++++.+...  ..-+|+||...|+.-|....
T Consensus        31 hKY~~~F~~~~~~~l~~LtdedL~~~GVt--a~GaRrKil~aI~~lr~~~~   79 (88)
T 2d3d_A           31 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDYKE   79 (88)
T ss_dssp             GGGHHHHTTSCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHhcCCHHHHHHcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHHHh
Confidence            56889999999999999999999998765  24689999999987776543

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=84.03  E-value=2.2  Score=34.87  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             HHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277          206 WPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS  263 (270)
Q Consensus       206 W~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail  263 (270)
                      |..-|+ -.-|.+.|.+.|.+.+..++|++++.+...  .+-+|+||...|.--+...
T Consensus        55 WL~sLr-L~KY~~~F~~~~~d~l~~LTeeDL~~lGVt--a~GaRrKlL~AI~~Lr~~k  109 (119)
T 2b6g_A           55 WLKSLR-LHKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDYK  109 (119)
T ss_dssp             HHHHHT-CHHHHHHHTTSCHHHHTTCCHHHHHHHSCC--CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCC-ChhHHHHHccCCHHHHHhcCHHHHHHCCCC--ccccHHHHHHHHHHHHhhh
Confidence            544332 377899999999999999999999998754  3579999998887666554

>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A

Probab=81.54  E-value=2.2  Score=34.16  Aligned_cols=47  Identities=19%  Similarity=0.195  Sum_probs=38.8

Q ss_pred             HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHH
Q 024277          214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI  262 (270)
Q Consensus       214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArai  262 (270)
                      .-|.+.|.+.+.+.+..++|++++.+...  .+-+|+||...|+.-+..
T Consensus        44 hKY~~~F~~~~~~~l~~LTdedL~~~GVt--a~GARrKiL~aI~~Lr~~   90 (101)
T 2es6_A           44 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY   90 (101)
T ss_dssp             CCTHHHHTTSCHHHHTTCCHHHHHHHTCC--SHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHccCCHHHHHhcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHH
Confidence            45778889999999999999999998765  246899999998876654

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2

Probab=80.83  E-value=2  Score=31.68  Aligned_cols=43  Identities=14%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277          214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN  258 (270)
Q Consensus       214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N  258 (270)
                      +.|...|  .+|| .+.|+.++++++.+|....  .-||.||...|..
T Consensus        25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~--~ghrkkil~ai~~   70 (78)
T 1v38_A           25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIAD--PEDRARLLSAAES   70 (78)
T ss_dssp             GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCC--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence            5577777  7995 9999999999999986642  3589998876654

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=80.35  E-value=2.7  Score=31.01  Aligned_cols=48  Identities=21%  Similarity=0.272  Sum_probs=36.8

Q ss_pred             HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277          214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS  263 (270)
Q Consensus       214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail  263 (270)
                      +.|.+.|  .+|| .+.|..++++|+.+|....  +-||.||...|..-+.-.
T Consensus        20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~l~~~~   70 (81)
T 1ucv_A           20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGITL--MGHQKKILGSIQTMRAQL   70 (81)
T ss_dssp             GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCC--hhHHHHHHHHHHHHHHHH
Confidence            4567777  5688 8999999999999876542  459999988887766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1nkua_	187	a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (T	2e-40

>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Length = 187

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

 Score =  136 bits (344), Expect = 2e-40
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 2/103 (1%)

Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
           +RC WV+   DP Y A+HD EWGVP  D KKLFE++ L G  + L+W  +L KR  +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 220 FVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262
           F  FDP+ V+ + E+ +      A  +    K++AII NAR  
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAY 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1nkua_	187	3-Methyladenine DNA glycosylase I (Tag) {Escherich	100.0
d1ngna_	144	Mismatch-specific thymine glycosylase domain of th	93.39
d1pu6a_	217	3-Methyladenine DNA glycosylase III (MagIII) {Heli	93.24
d1rrqa1	221	Catalytic domain of MutY {Bacillus stearothermophi	90.38
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	88.89
d2abka_	211	Endonuclease III {Escherichia coli [TaxId: 562]}	86.81
d1keaa_	217	Thymine-DNA glycosylase {Archaeon Methanobacterium	86.77
d1orna_	214	Endonuclease III {Escherichia coli [TaxId: 562]}	85.58
d1mpga1	183	3-Methyladenine DNA glycosylase II (gene alkA or a	84.24
d1kg2a_	224	Catalytic domain of MutY {Escherichia coli [TaxId:	84.15
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	82.88

>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-52  Score=362.40  Aligned_cols=108  Identities=40%  Similarity=0.746  Sum_probs=105.6

Q ss_pred             CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 024277          159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA  238 (270)
Q Consensus       159 ~~RC~Wat~~sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~  238 (270)
                      ++||.|++  ++|+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus         1 ~~RC~W~~--~~~~~~~YHD~eWG~p~~dD~~LFE~L~Le~fQaGLsW~~IL~Kr~~fr~aF~~Fd~~~vA~~~e~~ie~   78 (187)
T d1nkua_           1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_dssp             CCCCSSCC--SCHHHHHHHHHSSSSCCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHhccCCCcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCHHHHHcCCHHHHHH
Confidence            57999996  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccchhhcchhHHHHHHHHHHHHHHhccc
Q 024277          239 AGSAASSLLSELKLRAIIENARQISKVGYP  268 (270)
Q Consensus       239 Ll~d~~IIRNr~KI~AVI~NArailkI~~~  268 (270)
                      ||+|++|||||+||+|||+||+++++|+++
T Consensus        79 Ll~d~~IIRNr~KI~Avi~NAr~~l~i~~e  108 (187)
T d1nkua_          79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQN  108 (187)
T ss_dssp             HHTCCSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhccCCeeechHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999865

>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.39  E-value=0.19  Score=39.11  Aligned_cols=70  Identities=11%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      -|+.|+-+++..--+|..+.+-.+.|.+.|-  +++.+++.++++|+.+...-|.  .+.|-+-|++-|+.++.
T Consensus        20 Pf~~LV~~ILsqqT~~~~v~~v~~~L~~~~p--t~e~la~a~~~el~~~Ir~~G~--~~~KAk~I~~~a~~~ip   89 (144)
T d1ngna_          20 PWKLLIATIFLNRTSGKMAIPVLWEFLEKYP--SAEVARAADWRDVSELLKPLGL--YDLRAKTIIKFSDEYLT   89 (144)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHSC--SHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--chhhhhccCHHHHHHHHHhhhh--HHHHHHHHHHHHhhHhh
Confidence            4799999999999999999877777666654  8999999999999999887665  56677788888888754

>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase III (MagIII)
domain: 3-Methyladenine DNA glycosylase III (MagIII)
species: Helicobacter pylori [TaxId: 210]

Probab=93.24  E-value=0.14  Score=42.50  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC-----CCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          190 KLFELLVLSGALSELTWPAILSKRHIFREVFVG-----FDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       190 ~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g-----FDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      --||.|+-++...-.+|..+.+--..++++|..     .+++.|+..++++|+.+...-+.  .+.|.+.+++=|+.+.+
T Consensus        28 ~pfe~lv~aIL~Qqts~~~a~~a~~~L~~~~~~~~~~~~t~~~la~a~~eel~~~ir~~G~--~~~KA~~i~~~a~~i~~  105 (217)
T d1pu6a_          28 LKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGF--YNQKAKRLIDLSGNILK  105 (217)
T ss_dssp             TSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccCCCHHHHHCCCHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHH
Confidence            359999999999999999997666666666643     37999999999999998887664  67777778777776643

>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.38  E-value=0.57  Score=38.30  Aligned_cols=71  Identities=13%  Similarity=0.197  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          189 KKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       189 r~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      +--||.|+-+++..--+|.++.+-...|.+.|-  +++.++..++++|+.+...-+.-   .|-..++..|+.+++
T Consensus        26 ~dp~~vLV~~iLsqqT~~~~v~~~~~~L~~~~~--t~~~la~a~~~~l~~~i~~~G~~---~ra~~l~~~~~~~~~   96 (221)
T d1rrqa1          26 RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFP--TLEALADADEDEVLKAWEGLGYY---SRVRNLHAAVKEVKT   96 (221)
T ss_dssp             CCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSC--SHHHHHHSCHHHHHHHHTTSSCT---HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHhhcHHHHHhhhccchhh---hhhHHHHHHHHHHhh
Confidence            445999999999999999999999999999885  89999999999999988866553   245556677766654

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.89  E-value=0.21  Score=34.16  Aligned_cols=44  Identities=20%  Similarity=0.249  Sum_probs=36.8

Q ss_pred             HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024277          214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR  260 (270)
Q Consensus       214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAr  260 (270)
                      +.|.+.|.+.+++.+..++|++++.+....   =+|.||...|..-|
T Consensus        18 ~~Y~~~F~~~~~d~l~~lt~~dL~~lGI~~---GhRkkil~~I~~Lk   61 (62)
T d1oxja1          18 HKYIELFKNMTYEEMLLITEDFLQSVGVTK---GASHKLALCIDKLK   61 (62)
T ss_dssp             GGGGGGGTTCCHHHHTTCCHHHHHHTTCCH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHhCCHHHHHHcCCCH---HHHHHHHHHHHHhc
Confidence            568899999999999999999999988764   37999888776543

>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=86.81  E-value=0.62  Score=38.06  Aligned_cols=69  Identities=20%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       192 FE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      ||.|+-+++..-=+|.++.+-.+.|.+.|  .+++.++..++++|+.+..--+  -.+.|-+.++.-|+.+.+
T Consensus        30 ~~vli~~iLsqqT~~~~v~~~~~~l~~~~--~t~~~la~a~~~~l~~~i~~~G--~y~~Ka~~l~~~a~~i~~   98 (211)
T d2abka_          30 FELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIG--LYNSKAENIIKTCRILLE   98 (211)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhc--cChHHHHhhhHhHhHHHHHHhh--hhhhHHHHHHHHHHHHHH
Confidence            89999999999999999999888888776  5899999999999998877544  456777788888887764

>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Thymine-DNA glycosylase
species: Archaeon Methanobacterium thermoformicicum [TaxId: 145262]

Probab=86.77  E-value=1.6  Score=35.54  Aligned_cols=70  Identities=14%  Similarity=0.047  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      -|+.|+-+++..-=+|.++..-.+.|.+.|-  +++.++..++++|+.+..--+  -.+.|-..+++=|+.|.+
T Consensus        33 p~~vLv~~iLsqqT~~~~v~~~~~~l~~~~p--t~~~la~a~~~~l~~~i~~~G--~~~~KA~~l~~~a~~i~~  102 (217)
T d1keaa_          33 PYVILITEILLRRTTAGHVKKIYDKFFVKYK--CFEDILKTPKSEIAKDIKEIG--LSNQRAEQLKELARVVIN  102 (217)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHCC--SHHHHHHSCHHHHHHHTGGGS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHhcc--cHHHHHHhhHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHh
Confidence            4999999999999999999998888888875  899999999999999877543  456677777777777765

>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=3.3  Score=33.44  Aligned_cols=69  Identities=16%  Similarity=0.053  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277          192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK  264 (270)
Q Consensus       192 FE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk  264 (270)
                      |+.|+-+++..-=.|.++.+-.+.|.+.|-  +++.++..++++++.+...-+.  .+.|-+-++..|+.|.+
T Consensus        31 ~~vLVs~iLsqqT~~~~v~~~~~~l~~~~p--t~~~la~~~~~e~~~~i~~~g~--y~~ka~~l~~~a~~i~~   99 (214)
T d1orna_          31 FELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGL--YRNKARNIQKLCAMLID   99 (214)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSS--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcChHHHHHHHHhhhhcccC--chhhhhhccHHHhhhhhhhhhh--hhHHHHHHHHHhhhHHH
Confidence            999999999999999999999988888875  6899999999999998876554  45566678888877653

>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 3-Methyladenine DNA glycosylase II (gene alkA or aidA)
species: Escherichia coli [TaxId: 562]

Probab=84.24  E-value=3.6  Score=32.39  Aligned_cols=68  Identities=15%  Similarity=0.064  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC-----------CCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHH
Q 024277          191 LFELLVLSGALSELTWPAILSKRHIFREVFVG-----------FDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENA  259 (270)
Q Consensus       191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g-----------FDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NA  259 (270)
                      .||.|+-.+..-.+|+..+.+-+.-|.+.|..           -.|+.|+..+++++..+.      .++.|.+.|+.=|
T Consensus        14 pfe~Lv~~Ii~Qqis~~aA~~i~~rl~~~~g~~~~~~~~~~~FPtp~~l~~~~~~~lr~~G------ls~~Ka~~i~~~a   87 (183)
T d1mpga1          14 AFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALG------MPLKRAEALIHLA   87 (183)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHTT------SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHhCccccccccccCCCcHHHHHcCCHHHHHHcC------CcHHHHHHHHHHH
Confidence            69999999999999999999999999888854           268999999999886642      3677888888878


Q ss_pred             HHHHH
Q 024277          260 RQISK  264 (270)
Q Consensus       260 railk  264 (270)
                      +.+.+
T Consensus        88 ~~~~~   92 (183)
T d1mpga1          88 NAALE   92 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            77754

>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Escherichia coli [TaxId: 562]

Probab=84.15  E-value=2.3  Score=34.56  Aligned_cols=80  Identities=13%  Similarity=0.146  Sum_probs=62.1

Q ss_pred             CCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHH
Q 024277          180 EWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENA  259 (270)
Q Consensus       180 EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NA  259 (270)
                      ...-|-.+.+--|+.|+-+++.+-=.|.++..-.+.|.+.|-  +++.+|..++++|+.+...-+.-  + |-.-++..|
T Consensus        19 ~~~lPWr~~~~p~~vlvs~iLsqqT~~~~v~~~~~~l~~~~p--t~~~la~a~~~~l~~~i~~~g~~--~-ka~~l~~~~   93 (224)
T d1kg2a_          19 RKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFP--TVTDLANAPLDEVLHLWTGLGYY--A-RARNLHKAA   93 (224)
T ss_dssp             CCCSGGGSSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCS--SHHHHHHSCHHHHHHHHTTSCCT--H-HHHHHHHHH
T ss_pred             CCCCCCCCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHhc--cHHHHHHhhHHHHHhHhhhhhHH--H-HHHHHHHhh
Confidence            444443434446899999999999999999999988888886  89999999999999988776643  3 336677777


Q ss_pred             HHHHH
Q 024277          260 RQISK  264 (270)
Q Consensus       260 railk  264 (270)
                      +.+++
T Consensus        94 ~~i~~   98 (224)
T d1kg2a_          94 QQVAT   98 (224)
T ss_dssp             HHHHH
T ss_pred             hhhhh
Confidence            77765

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.88  E-value=0.79  Score=30.60  Aligned_cols=40  Identities=15%  Similarity=0.105  Sum_probs=31.6

Q ss_pred             HHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277          215 IFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE  257 (270)
Q Consensus       215 ~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~  257 (270)
                      .|.+.|  .||| ++.|+.++++|+.++..+.   -||.||-.-|.
T Consensus        13 ~Y~~~F~~~G~~~l~~l~~lt~eDL~~lGI~~---~hr~kilk~i~   55 (57)
T d1dxsa_          13 NCIEYFTSQGLQSIYHLQNLTIEDLGALKIPE---QYRMTIWRGLQ   55 (57)
T ss_dssp             TSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCT---TTHHHHHHHHH
T ss_pred             HHHHHHHHccCCcHHHHHHhhHHHHHHcCCCH---HHHHHHHHHHH
Confidence            355555  4676 9999999999999998863   69999976654