Citrus Sinensis ID: 024288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDHYILLH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEcccHHHcccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEcccccHHcccccccccccHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHccccccEEEEc
Coil and Loop (DISEMBL)
msfpnssspflaqelqsysagsdaigvwpqfsmsdeqqydrlsqydqqppfkrprnyednesnsatyppmnprmnpsmnlpinkgitnIFFKTRLCAkfkhgacrngencnfahgmedlrqpppnwqelvgggraeedrssggnwdddQKIIHKMKLCKkfyngeecpygdrcnflhedpakfrddsgryressaisigttgppvvtgscsnqaegnrpvgsncvkpvywKTKLCIkwtqgqcpfgekchfahgqsgilccldhyillh
Flexible Loop (DISEMBL)
MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPfkrprnyednesnsatyppmnprmNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGraeedrssggnwdddqkIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSaisigttgppvvTGSCSnqaegnrpvgsncvkPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDHYILLH
Low Complexity Region (SEG)
MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDNESNSATYppmnprmnpsmnlpINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDHYILLH
Disordered region (IsUnstruct)
************************IGVW****************************************************PINKGITNIFFKTRLCAKFKHGACRNGENCNFAHG********************************DQKIIHKMKLCKKFYNGEECPYGDRCNFLHE*****************************************VGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDHYILL*
Disordered Region (DISOPRED)
********************************************************************************************TRLCAKFKHGACRNGENCNFAHGMED*********************************IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCL*******
Disordered Region (DISEMBL)
*********FLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELV**************WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDHYILLH
Disordered Region (DISPRO)
**************************************************************************************TNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQEL********************KIIHKMKLCKKFYNGEECPYGDRCNFLHED*****************************SC*****************VYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDHYILLH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDHYILLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q9LT81	386	Zinc finger CCCH domain-c	yes	no	0.773	0.538	0.545	2e-63
Q84UQ3	367	Zinc finger CCCH domain-c	yes	no	0.628	0.460	0.412	3e-30
Q9LQM3	384	Zinc finger CCCH domain-c	no	no	0.609	0.427	0.369	3e-27
Q6S9E0	325	Tristetraprolin OS=Ovis a	N/A	no	0.230	0.190	0.363	2e-08
P26651	326	Tristetraprolin OS=Homo s	yes	no	0.319	0.263	0.301	3e-08
P53781	324	Tristetraprolin OS=Bos ta	yes	no	0.230	0.191	0.352	1e-07
Q5PP65	252	Zinc finger CCCH domain-c	no	no	0.338	0.361	0.349	2e-07
P22893	319	Tristetraprolin OS=Mus mu	yes	no	0.230	0.194	0.340	3e-07
P23950	338	Zinc finger protein 36, C	no	no	0.297	0.236	0.292	7e-07
P17431	338	Zinc finger protein 36, C	yes	no	0.297	0.236	0.292	7e-07

>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/240 (54%), Positives = 157/240 (65%), Gaps = 32/240 (13%)

Query: 51  FKRPRNYEDNESNSATYPPM----NPRMNPSMNLP-INKGITNIFFKTRLCAKFKHGACR 105
            KRPR  +DN  N A+  P     NP M PS+N P +NKG  NIF+KTR+CAKF+ G CR
Sbjct: 60  LKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCR 119

Query: 106 NGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSS-----------------GGNWDDD 148
           NGE CNFAHG+EDLRQPP NWQE+VG   A +DR                     NW+DD
Sbjct: 120 NGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERPSLAPVVNNNWEDD 179

Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTG 208
           QKII +MKLC+KF  GEECPYGDRCNF+HED +KFR+DSG+ RESS IS+G T     + 
Sbjct: 180 QKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSD 239

Query: 209 SCSNQAEGNR----PV-----GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258
           + SN  E NR    PV         VK VYWKT+LC+K+   GQCPFG+KCHFAHGQ+ +
Sbjct: 240 TASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=2 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 106/211 (50%), Gaps = 42/211 (19%)

Query: 79  NLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGG-RAEE 137
           N   ++ I  +FFKT+LC KF+ G C    NCNFAHGME+LR+PPPNWQE+V     A E
Sbjct: 76  NTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATE 135

Query: 138 DR---------SSGGNWDDDQKI----------IHKMKLCKKFYNGEECPYGDRCNFLHE 178
            R         SSG     D              +K + CKKFY  E CPYGD C FLH 
Sbjct: 136 AREEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLH- 194

Query: 179 DPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN----------QAEGNRPVGSNCVKPV 228
                 D+  + RES AIS+  +      G   N           A GN P+     KP 
Sbjct: 195 ------DEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAASASAAAGNGPM----QKPS 244

Query: 229 YWKTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258
            WKT++C KW   G CPFG KCHFAHG + +
Sbjct: 245 NWKTRICNKWEMTGYCPFGSKCHFAHGAAEL 275

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 103/219 (47%), Gaps = 55/219 (25%)

Query: 83  NKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSG 142
            K I  +FFKT+LC KF+ G C    NCNFAH +E+LR+PPPNWQE+V    A E+  SG
Sbjct: 84  TKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVA---AHEEERSG 140

Query: 143 GNWDDDQKIIH----------------------KMKLCKKFYNGEECPYGDRCNFLHEDP 180
           G       ++                       K + CKKFY  E CPYG+ C FLH   
Sbjct: 141 GMGTPTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH--- 197

Query: 181 AKFRDDSGRYRESSAISIGTTGPP--------------------VVTGSCSNQAEGNRPV 220
               D++ R RES AIS+G  G                      VV       +     +
Sbjct: 198 ----DEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGI 253

Query: 221 GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258
               +KP  WKT++C KW   G CPFG KCHFAHG + +
Sbjct: 254 --QILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290

Arabidopsis thaliana (taxid: 3702)

>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 26/88 (29%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           +KT LC  F + G CR G  C FAHG+ +LRQP                          +
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQP-------------------------SR 136

Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              +K +LC KFY    CPYG RC+F+H
Sbjct: 137 HPKYKTELCHKFYLQGRCPYGSRCHFIH 164

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Ovis aries (taxid: 9940)

>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 30/116 (25%)

Query: 67  YPPMNPRMNPSMNLPINKGITNIF----FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQ 121
           + P+ PR+ P ++               +KT LC  F + G CR G  C FAHG+ +LRQ
Sbjct: 76  FAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 135

Query: 122 PPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
                                     ++   +K +LC KFY    CPYG RC+F+H
Sbjct: 136 -------------------------ANRHPKYKTELCHKFYLQGRCPYGSRCHFIH 166

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Homo sapiens (taxid: 9606)

>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 26/88 (29%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           +KT LC  F + G CR G  C FAHG+ +LRQ                           +
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQ-------------------------ASR 136

Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              +K +LC KFY    CPYG RC+F+H
Sbjct: 137 HPKYKTELCHKFYLQGRCPYGSRCHFIH 164

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Bos taurus (taxid: 9913)

>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana GN=At2g35430 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 53/123 (43%), Gaps = 32/123 (26%)

Query: 150 KIIHKMKLCKKFYNGEECPY-GDRCNFLHEDPA------------KFRDDSGRYRESSAI 196
           K   K KLC KF  G  CPY    C+F H                +   ++ R RES A+
Sbjct: 69  KSFFKTKLCFKFRAGT-CPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAV 127

Query: 197 SIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQ 255
           S+G  G    T                 +K   WKT++C KW T G CPFG  CHFAHG 
Sbjct: 128 SLGPRGNVAQT-----------------LKSPNWKTRICNKWQTTGYCPFGSHCHFAHGP 170

Query: 256 SGI 258
           S +
Sbjct: 171 SEL 173

Arabidopsis thaliana (taxid: 3702)

>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 26/88 (29%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           +KT LC  + + G CR G  C FAHG+ +LRQ                          ++
Sbjct: 96  YKTELCRTYSESGRCRYGAKCQFAHGLGELRQ-------------------------ANR 130

Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              +K +LC KFY    CPYG RC+F+H
Sbjct: 131 HPKYKTELCHKFYLQGRCPYGSRCHFIH 158

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Mus musculus (taxid: 10090)

>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 26/106 (24%)

Query: 73  RMNPSMNLPINKGITNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVG 131
           R+ P+   P +  + +  +KT LC  F+ +GAC+ G+ C FAHG+ +LR           
Sbjct: 97  RLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS---------- 146

Query: 132 GGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
                            +   +K +LC+ F+    CPYG RC+F+H
Sbjct: 147 ---------------LTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177

Probable regulatory protein involved in regulating the response to growth factors.

Mus musculus (taxid: 10090)

>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 26/106 (24%)

Query: 73  RMNPSMNLPINKGITNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVG 131
           R+ P+   P +  + +  +KT LC  F+ +GAC+ G+ C FAHG+ +LR           
Sbjct: 97  RLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS---------- 146

Query: 132 GGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
                            +   +K +LC+ F+    CPYG RC+F+H
Sbjct: 147 ---------------LTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177

Probable regulatory protein involved in regulating the response to growth factors.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
255566953	341	conserved hypothetical protein [Ricinus	0.921	0.727	0.672	2e-94
224105223	341	predicted protein [Populus trichocarpa]	0.918	0.724	0.650	8e-94
449443305	347	PREDICTED: zinc finger CCCH domain-conta	0.936	0.726	0.591	1e-81
225445436	349	PREDICTED: zinc finger CCCH domain-conta	0.936	0.722	0.614	9e-81
224078145	313	predicted protein [Populus trichocarpa]	0.762	0.654	0.669	2e-78
356565198	347	PREDICTED: zinc finger CCCH domain-conta	0.929	0.720	0.581	5e-76
356511656	345	PREDICTED: zinc finger CCCH domain-conta	0.929	0.724	0.584	7e-76
18402211	386	zinc finger CCCH domain-containing prote	0.773	0.538	0.545	9e-62
297830586	389	zinc finger (CCCH-type) family protein [	0.773	0.534	0.531	3e-61
312283483	391	unnamed protein product [Thellungiella h	0.773	0.531	0.522	5e-59

>gi|255566953|ref|XP_002524459.1| conserved hypothetical protein [Ricinus communis] gi|223536247|gb|EEF37899.1| conserved hypothetical protein [Ricinus communis]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 181/269 (67%), Positives = 212/269 (78%), Gaps = 21/269 (7%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQ-QPPFKRPRNYED 59
           MS+  S  PF++ +  +Y +GSDAIG+WPQF M+  +Q+D   Q+D  QPPFKRPRN ED
Sbjct: 1   MSYSESQPPFMSPQ-PTYQSGSDAIGIWPQFPMNSNEQFD--PQFDHHQPPFKRPRNSED 57

Query: 60  NESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDL 119
           N  +      MN RM P  NLPINKG TNIFFKTR+CAKFK G+CRNGENCNFAHGM+D+
Sbjct: 58  NNQS------MNYRMPPPNNLPINKGTTNIFFKTRMCAKFKTGSCRNGENCNFAHGMQDM 111

Query: 120 RQPPPNWQELVGGG-RAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHE 178
           RQPPPNWQELVG   R EEDR +G NWDDDQ+IIHKMKLCKKFYNGE+CPYGDRCNFLHE
Sbjct: 112 RQPPPNWQELVGVVVRGEEDRPAG-NWDDDQRIIHKMKLCKKFYNGEQCPYGDRCNFLHE 170

Query: 179 DPAKFRDDSGRYRESSAISIGTTGPPVVTGSCS-NQAEGNRPV---GSNC----VKPVYW 230
           DP+KFRDD+GR+RESSAISIGTT PP++ GS   +  E N+PV   G++     +KPVYW
Sbjct: 171 DPSKFRDDAGRFRESSAISIGTTAPPMMHGSGGLSVVEVNKPVNNAGADAYRGNMKPVYW 230

Query: 231 KTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258
           KTKLC KW T GQCPFGEKCHFAHGQ+ +
Sbjct: 231 KTKLCTKWETTGQCPFGEKCHFAHGQAEL 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105223|ref|XP_002313732.1| predicted protein [Populus trichocarpa] gi|222850140|gb|EEE87687.1| predicted protein [Populus trichocarpa]

 Score =  349 bits (895), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 175/269 (65%), Positives = 206/269 (76%), Gaps = 22/269 (8%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDN 60
           MS+P+S   F++ +  SY AGSDAIGVWPQF M++ +Q++       QPP+KRPRN EDN
Sbjct: 1   MSYPDSHDSFMSPQA-SYQAGSDAIGVWPQFVMNNIEQFEH-----HQPPYKRPRNSEDN 54

Query: 61  ESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLR 120
            + S     +N R  P+ NLP++KG TNIFFKTR+CAKFK G CRNGENCNFAHGM+DLR
Sbjct: 55  PNQS-----VNSRTPPTNNLPVHKGATNIFFKTRVCAKFKTGTCRNGENCNFAHGMQDLR 109

Query: 121 QPPPNWQELVGGG-RAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHED 179
           QPPPNW+ELVG    +EEDRS+  NW+DDQ+IIHKMKLCKKFYNGEECPYGDRCNFLHED
Sbjct: 110 QPPPNWKELVGVSVSSEEDRSTATNWEDDQRIIHKMKLCKKFYNGEECPYGDRCNFLHED 169

Query: 180 PAKFRDDSGRYRESSAISIGTTGPPVVTGS-CSNQAEGNRPVG--------SNCVKPVYW 230
           P+KFR+D+GR+RESSAISIGTTG  +  GS   N AE NRP          SN +KPVYW
Sbjct: 170 PSKFREDTGRFRESSAISIGTTGQALGHGSGVFNAAEVNRPANNAVSDASRSNIIKPVYW 229

Query: 231 KTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258
           KTKLC KW   GQCPFGEKCHFAHG + +
Sbjct: 230 KTKLCTKWEITGQCPFGEKCHFAHGLAEL 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443305|ref|XP_004139420.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis sativus] gi|449520655|ref|XP_004167349.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis sativus]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/272 (59%), Positives = 195/272 (71%), Gaps = 20/272 (7%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYD-QQPPFKRPRNYED 59
           MSF +  +  +   L SY +  DA G W QF  +D   +D  SQ++ QQPP+KR RN E+
Sbjct: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDP--FDPQSQFEVQQPPYKRARNSEE 58

Query: 60  NESNSATY--PPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGME 117
           N S+  +Y  P +N R  P  N P+NKGI+NIFFKTR+CAKFK G CRNG +CNFAHG+E
Sbjct: 59  NPSSPISYSNPSLNSRGQPP-NAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVE 117

Query: 118 DLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
           D+RQPPPNWQE+VG    +ED  S  NW+DDQKII KMKLC+KFYNGEECPYGDRCNFLH
Sbjct: 118 DMRQPPPNWQEIVG---IKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLH 174

Query: 178 EDPAKFRDDSGRYRESSAISIGTTGPPVVTGS-CSNQAEGNRPVGSNC---------VKP 227
           EDPAKFRDDSGR+RESSAISIGTTG P++ G+  S+  E +R    +          V+P
Sbjct: 175 EDPAKFRDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRP 234

Query: 228 VYWKTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258
            +WKTKLC KW   G CPFG+KCHFAHGQS +
Sbjct: 235 SFWKTKLCTKWEITGHCPFGDKCHFAHGQSEL 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445436|ref|XP_002281877.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Vitis vinifera]

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 166/270 (61%), Positives = 192/270 (71%), Gaps = 18/270 (6%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDN 60
           MSFP+S +  +A  L  +  G D IG W QF M++E+ Y+  S + + PP KR RN E  
Sbjct: 1   MSFPDSRA-LVAPPLHPFPVGDDDIGSWSQFPMNNEE-YEVHSHF-EYPPHKRTRNSEGQ 57

Query: 61  ESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLR 120
             NS+ +P MNPR++P  N P ++G +NIFFKTR+CAKFK G CRNGENCNFAHGMED+R
Sbjct: 58  MPNSSPHPSMNPRIHPP-NAPTSRGTSNIFFKTRICAKFKLGQCRNGENCNFAHGMEDMR 116

Query: 121 QPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 180
           QPPPNWQELV  G  EE+R +   WD+DQ+IIHKMKLCKKFYNGEECPYGDRCNFLHEDP
Sbjct: 117 QPPPNWQELVNVGGREEERGTKI-WDEDQRIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 175

Query: 181 AKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNR-----------PVGSNCVKPVY 229
            KFRDDS R RES AISIGTTGPP+  GS SN                 P   N VKP Y
Sbjct: 176 KKFRDDSARPRESFAISIGTTGPPMEHGSGSNLGSNLSSNLSSMNSGLDPFRGN-VKPTY 234

Query: 230 WKTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258
           WKTKLC KW T G CPFGEKCHFAHGQ+ +
Sbjct: 235 WKTKLCCKWETTGHCPFGEKCHFAHGQAEL 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078145|ref|XP_002305494.1| predicted protein [Populus trichocarpa] gi|222848458|gb|EEE86005.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/221 (66%), Positives = 171/221 (77%), Gaps = 16/221 (7%)

Query: 49  PPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGE 108
           PP+KRPRN EDN + S     M+ R+ P+ +LP++KG TNIFFKTR+CAKFK G CRNGE
Sbjct: 16  PPYKRPRNSEDNSNQS-----MSSRVPPTNSLPVHKGTTNIFFKTRVCAKFKTGTCRNGE 70

Query: 109 NCNFAHGMEDLRQPPPNWQELVGGG-RAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC 167
           NCNFAHGM+DLRQPPPNW+ELV  G  +E+DRS+  N +DD +IIHKMKLCKKFYNGEEC
Sbjct: 71  NCNFAHGMQDLRQPPPNWKELVSVGVSSEDDRSTATNREDDLRIIHKMKLCKKFYNGEEC 130

Query: 168 PYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGS-CSNQAEGNRPVG----- 221
           PYGDRCNFLHEDPA FR+D+GR+RESSAISIGTT   +  GS   N AE NRP       
Sbjct: 131 PYGDRCNFLHEDPANFREDTGRFRESSAISIGTTDHLMGQGSGIFNAAEVNRPANNAVSD 190

Query: 222 ---SNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258
              SN +KPVYWKTKLC KW   GQCPFGEKCHFAHG + +
Sbjct: 191 APRSNLIKPVYWKTKLCTKWEMTGQCPFGEKCHFAHGLAEL 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565198|ref|XP_003550830.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Glycine max]

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 154/265 (58%), Positives = 186/265 (70%), Gaps = 15/265 (5%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDN 60
           MSF +    F+     S+S  +DAI V  QF M++E   +  S  D+ P FKR R  +++
Sbjct: 1   MSFSDHIPSFMMSP-PSFSTDTDAIEVRLQFPMNNES-LEPHSPQDRPPSFKRARTCDNS 58

Query: 61  ESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLR 120
            SN+   PP   RM    +  +NKG ++IFFKTR+CAKF+ GACRNGENCNFAHG+ED+R
Sbjct: 59  LSNAMACPP---RM--IQHPAVNKGTSHIFFKTRICAKFRVGACRNGENCNFAHGLEDMR 113

Query: 121 QPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 180
           QPPPNWQELVG  R EE     G+WDDDQKIIHKMKLCKK+YNGEECPYGD+C+FLHEDP
Sbjct: 114 QPPPNWQELVGL-RGEERPPMAGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDP 172

Query: 181 AKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNC------VKPVYWKTKL 234
           A+FRDDS RYRES++ISIGT G P   G  SN  E NR V +        VK  YWKTKL
Sbjct: 173 ARFRDDSVRYRESTSISIGTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKL 232

Query: 235 CIKW-TQGQCPFGEKCHFAHGQSGI 258
           CIK+ T G CPFG+ CHFAHGQ+ +
Sbjct: 233 CIKFETTGHCPFGDDCHFAHGQAEL 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511656|ref|XP_003524539.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Glycine max]

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 155/265 (58%), Positives = 185/265 (69%), Gaps = 15/265 (5%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDN 60
           MSF +    F+     S+S  +DAI V  QF  ++E   +  S  DQ P FKR R  + +
Sbjct: 1   MSFSDHIPSFMMSP-PSFSTDTDAIEVRLQFPTNNES-LEPHSPQDQPPSFKRARTCDSS 58

Query: 61  ESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLR 120
            SN+   PP   RM    +  +NKG ++IFFKTR+CAKF+ GACRNGENCNFAHG+ED+R
Sbjct: 59  LSNAMACPP---RM--IQHPALNKGTSHIFFKTRICAKFRAGACRNGENCNFAHGLEDMR 113

Query: 121 QPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 180
           QPPPNWQELVG  R EE   + G+WDDDQKIIHKMKLCKK+YNGEECPYGD+C+FLHEDP
Sbjct: 114 QPPPNWQELVGL-RNEERPPTMGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDP 172

Query: 181 AKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNC------VKPVYWKTKL 234
           A+FRDDS RYRES+AISIGT G P   G  SN  E NR V +        VK  YWKTKL
Sbjct: 173 ARFRDDSVRYRESTAISIGTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKL 232

Query: 235 CIKW-TQGQCPFGEKCHFAHGQSGI 258
           CIK+ T G CPFG+ CHFAHGQ+ +
Sbjct: 233 CIKFETTGHCPFGDDCHFAHGQAEL 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402211|ref|NP_566631.1| zinc finger CCCH domain-containing protein 39 [Arabidopsis thaliana] gi|75274079|sp|Q9LT81.1|C3H39_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 39; Short=AtC3H39 gi|11994458|dbj|BAB02460.1| unnamed protein product [Arabidopsis thaliana] gi|14335094|gb|AAK59826.1| AT3g19360/MLD14_8 [Arabidopsis thaliana] gi|19548069|gb|AAL87398.1| AT3g19360/MLD14_8 [Arabidopsis thaliana] gi|332642708|gb|AEE76229.1| zinc finger CCCH domain-containing protein 39 [Arabidopsis thaliana]

 Score =  243 bits (619), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 131/240 (54%), Positives = 157/240 (65%), Gaps = 32/240 (13%)

Query: 51  FKRPRNYEDNESNSATYPPM----NPRMNPSMNLP-INKGITNIFFKTRLCAKFKHGACR 105
            KRPR  +DN  N A+  P     NP M PS+N P +NKG  NIF+KTR+CAKF+ G CR
Sbjct: 60  LKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCR 119

Query: 106 NGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSS-----------------GGNWDDD 148
           NGE CNFAHG+EDLRQPP NWQE+VG   A +DR                     NW+DD
Sbjct: 120 NGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERPSLAPVVNNNWEDD 179

Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTG 208
           QKII +MKLC+KF  GEECPYGDRCNF+HED +KFR+DSG+ RESS IS+G T     + 
Sbjct: 180 QKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSD 239

Query: 209 SCSNQAEGNR----PV-----GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSGI 258
           + SN  E NR    PV         VK VYWKT+LC+K+   GQCPFG+KCHFAHGQ+ +
Sbjct: 240 TASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830586|ref|XP_002883175.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297329015|gb|EFH59434.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 128/241 (53%), Positives = 157/241 (65%), Gaps = 33/241 (13%)

Query: 51  FKRPRNYEDNESNSATYPPM----NPRMNPSMNLP-INKGITNIFFKTRLCAKFKHGACR 105
            KRPR  +DN  N A+  P     NP M PS+N P +NKG  NIF+KTR+CAKF+ G CR
Sbjct: 62  LKRPRLVDDNVFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCR 121

Query: 106 NGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRS------------------SGGNWDD 147
           NGE CNFAHG+EDLRQPP NWQE+VG    ++                     +  NW+D
Sbjct: 122 NGELCNFAHGIEDLRQPPSNWQEIVGPPPGQDREKERERERERERERPSLAPVANNNWED 181

Query: 148 DQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVT 207
           DQKII +MKLC+KF  GEECPYGDRCNF+HED +KFR+DSG+ RESS IS+GT+     +
Sbjct: 182 DQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGTSAADPPS 241

Query: 208 GSCSNQAEGNR----PV-----GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSG 257
            + SN  E NR    PV         VK VYWKT+LC+K+   GQCPFG+KCHFAHGQ+ 
Sbjct: 242 DTASNHIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQTE 301

Query: 258 I 258
           +
Sbjct: 302 L 302

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283483|dbj|BAJ34607.1| unnamed protein product [Thellungiella halophila]

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 126/241 (52%), Positives = 157/241 (65%), Gaps = 33/241 (13%)

Query: 51  FKRPRNYEDNESNSAT-YPPM----NPRMNPSMNLP-INKGITNIFFKTRLCAKFKHGAC 104
            KRPR  +DN  N A+ +PP     NP M PS+N P +NKG  NIF+KTR+CAKFK G C
Sbjct: 64  LKRPRLVDDNLFNPASSFPPTSNNNNPSMVPSLNPPPVNKGTANIFYKTRMCAKFKAGTC 123

Query: 105 RNGENCNFAHGMEDLRQPPPNWQELVG----------------GGRAEEDRSSGGNWDDD 148
           RNGE CNFAHG+EDLRQPP NWQE+VG                        S G NW+DD
Sbjct: 124 RNGELCNFAHGIEDLRQPPSNWQEIVGPPVQDRERERERERERERERPSSVSVGNNWEDD 183

Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTT---GPPV 205
           QKII +MKLC+KF  GEECPYG+RCNF+HED +KFR++SG+ RESS IS+GT+    P V
Sbjct: 184 QKIILRMKLCRKFCFGEECPYGERCNFIHEDLSKFREESGKPRESSVISVGTSVADSPCV 243

Query: 206 VTGSCS-NQAEGNRPVGSNCVKPV-------YWKTKLCIKWTQGQCPFGEKCHFAHGQSG 257
             G+ + NQ + NR  G     P+       +WKT+LC+K+  GQCPFG+ C FAHGQ+ 
Sbjct: 244 ENGTTAYNQIDVNRQGGIPVPAPINSNGGVKFWKTRLCMKFEIGQCPFGDNCSFAHGQAE 303

Query: 258 I 258
           +
Sbjct: 304 L 304

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2090669	386	AT3G19360 [Arabidopsis thalian	0.520	0.362	0.509	1.8e-62
TAIR|locus:2028306	384	AT1G32360 [Arabidopsis thalian	0.364	0.255	0.405	7.4e-16
TAIR|locus:2062476	252	AT2G35430 [Arabidopsis thalian	0.408	0.436	0.385	2.6e-13
ZFIN|ZDB-GENE-030131-6366	336	zgc:162730 "zgc:162730" [Danio	0.286	0.229	0.308	1.2e-11
TAIR|locus:2099292	248	AT3G12130 [Arabidopsis thalian	0.137	0.149	0.441	6.7e-10
UNIPROTKB|Q6S9E0	325	ZFP36 "Tristetraprolin" [Ovis	0.133	0.110	0.513	3.3e-08
UNIPROTKB|P26651	326	ZFP36 "Tristetraprolin" [Homo	0.137	0.113	0.487	7.8e-08
UNIPROTKB|G3V2D5	176	ZFP36L1 "Zinc finger protein 3	0.111	0.170	0.516	1.4e-07
UNIPROTKB|G3MWV8	324	ZFP36 "Tristetraprolin" [Bos t	0.130	0.108	0.5	2.2e-07
UNIPROTKB|P53781	324	ZFP36 "Tristetraprolin" [Bos t	0.130	0.108	0.5	2.2e-07

TAIR|locus:2090669 AT3G19360 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 80/157 (50%), Positives = 100/157 (63%)

Query:   117 EDLRQPPPNWQELVGGGRAEEDRSS-------GGNWDDDQKIIHKMKLCKKFYNGEECPY 169
             +++  PPP  Q+       E +R           NW+DDQKII +MKLC+KF  GEECPY
Sbjct:   141 QEIVGPPPAGQDRERERERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPY 200

Query:   170 GDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNR----PV----- 220
             GDRCNF+HED +KFR+DSG+ RESS IS+G T     + + SN  E NR    PV     
Sbjct:   201 GDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMN 260

Query:   221 GSNCVKPVYWKTKLCIKWT-QGQCPFGEKCHFAHGQS 256
                 VK VYWKT+LC+K+   GQCPFG+KCHFAHGQ+
Sbjct:   261 NGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQA 297

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2028306 AT1G32360 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 47/116 (40%), Positives = 59/116 (50%)

Query:   154 KMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDD------SGRYRE-----SSAISIGTTG 202
             K + CKKFY  E CPYG+ C FLH++ ++ R+        G Y       S   S+G  G
Sbjct:   174 KGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGG 233

Query:   203 PP---VVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWT-QGQCPFGEKCHFAHG 254
                  VV G       G+   G   +KP  WKT++C KW   G CPFG KCHFAHG
Sbjct:   234 SSSNVVVLGGGGGSGSGS---GIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHG 286

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

TAIR|locus:2062476 AT2G35430 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 47/122 (38%), Positives = 62/122 (50%)

Query:    90 FFKTRLCAKFKHGACR-NGENCNFAHGMEDLR---QPPPNWQELVG-GGRAEEDR--SSG 142
             FFKT+LC KF+ G C  +  +C+FAH  E+LR    PPPNWQE V    R  E    S G
Sbjct:    71 FFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLG 130

Query:   143 --GNWDDDQKIIH-KMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIG 199
               GN     K  + K ++C K+     CP+G  C+F H  P++     G   E     IG
Sbjct:   131 PRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAH-GPSELHTFGGGLVEGEC-KIG 188

Query:   200 TT 201
             T+
Sbjct:   189 TS 190

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

ZFIN|ZDB-GENE-030131-6366 zgc:162730 "zgc:162730" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
 Identities = 25/81 (30%), Positives = 37/81 (45%)

Query:   153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTT---GPPVVTGS 209
             +K + C+ FY    CPYG RC+F+HE+ +   + + R    S    G T    PP    S
Sbjct:   151 YKTQACRTFYQFGYCPYGSRCHFIHEEKSSLSEQNPRQLRQSVSFAGFTRSSSPPSSYES 210

Query:   210 CS-NQAEGNRPVGSNCVKPVY 229
              S  +A    P     + PV+
Sbjct:   211 LSFTRAPSVSPPPEEILSPVF 231

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

TAIR|locus:2099292 AT3G12130 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query:   214 AEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQS 256
             +EG    GSN      +KTK+C ++++G C FG++CHFAHG++
Sbjct:   204 SEGKPHPGSN------FKTKICERFSKGNCTFGDRCHFAHGEA 240

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q6S9E0 ZFP36 "Tristetraprolin" [Ovis aries (taxid:9940)]

 Score = 100 (40.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query:    87 TNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQP 122
             T+  +KT LC  F   G CR G  C FAHG+ +LRQP
Sbjct:    98 TSSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQP 134

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0010494 "cytoplasmic stress granule" evidence=ISS

GO:0017091 "AU-rich element binding" evidence=ISS

GO:0032680 "regulation of tumor necrosis factor production" evidence=ISS

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS

GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISS

GO:0071889 "14-3-3 protein binding" evidence=ISS

UNIPROTKB|P26651 ZFP36 "Tristetraprolin" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query:   227 PVYWKTKLCIK-WTQGQCPFGEKCHFAHGQSGILCCLDH 264
             P Y KT+LC K + QG+CP+G +CHF H  S  L    H
Sbjct:   140 PKY-KTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGH 177

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0050779 "RNA destabilization" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=IMP;IDA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0019957 "C-C chemokine binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0006950 "response to stress" evidence=IDA

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0071889 "14-3-3 protein binding" evidence=IDA

GO:0032680 "regulation of tumor necrosis factor production" evidence=IDA

GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IDA

GO:1900153 "positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISS

GO:0003727 "single-stranded RNA binding" evidence=TAS

GO:0003729 "mRNA binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 95 (38.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query:    91 FKTRLCAKFK-HGACRNGENCNFAHGMEDLR 120
             +KT LC  F+ +GAC+ G+ C FAHG+ +LR
Sbjct:    93 YKTELCRPFEENGACKYGDKCQFAHGIHELR 123

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

UNIPROTKB|G3MWV8 ZFP36 "Tristetraprolin" [Bos taurus (taxid:9913)]

 Score = 93 (37.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query:    87 TNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQ 121
             T+  +KT LC  F   G CR G  C FAHG+ +LRQ
Sbjct:    98 TSSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 133

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|P53781 ZFP36 "Tristetraprolin" [Bos taurus (taxid:9913)]

 Score = 93 (37.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query:    87 TNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQ 121
             T+  +KT LC  F   G CR G  C FAHG+ +LRQ
Sbjct:    98 TSSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 133

GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISS

GO:0010494 "cytoplasmic stress granule" evidence=ISS

GO:0071889 "14-3-3 protein binding" evidence=ISS

GO:0032680 "regulation of tumor necrosis factor production" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0017091 "AU-rich element binding" evidence=ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	5e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	6e-05
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-04
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-04
COG5252	299	COG5252, COG5252, Uncharacterized conserved protei	8e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.001

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)

Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQ 255
           +KT+LC  +++ G C +G++C FAHGQ
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 91  FKTRLCAKFKHGACRNGENCNFAHGM 116
           +KT LC  FK G C  G+ C FAH +
Sbjct: 2   YKTELCKFFKRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 230 WKTKLCIKWTQGQCPFGEKCHFAHG 254
           +KT+LC  + +G CP G++C FAH 
Sbjct: 2   YKTELCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGM 116
           +KT LC  F + G C+ G+ C FAHG 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 154 KMKLCKKFYNGEECPYGDRCNFLH 177
           K +LC+ F     C YGDRC F H
Sbjct: 2   KTELCRFFSRTGTCKYGDRCKFAH 25

Length = 27

>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 92  KTRLCAKFKHGACRNGENCNFAHGMEDLR--QPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           KT +CA F +  C  G+ C FAHG E+ R  + P  + ++      EED   G     + 
Sbjct: 84  KTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRD---KEEDVPLGKRPWINT 140

Query: 150 KIIHKMKL----CKKFYNGEECPYG-DRCNFLHEDPAKFRDDSGRYRESSAISI 198
             + K  +      K+  G  CP G  RC+++H+ P  +     + ++S+ + I
Sbjct: 141 DRVCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPDGYVLSRDKIKDSTQVEI 194

Length = 299

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 154 KMKLCKKFYNGEECPYGDRCNFLHED 179
           K +LCK F  G  CP GDRC F H  
Sbjct: 3   KTELCKFFKRGY-CPRGDRCKFAHPL 27

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.41
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.29
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	99.19
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.17
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.13
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.01
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.76
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.58
KOG1763	343	consensus Uncharacterized conserved protein, conta	98.57
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.5
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.49
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	98.34
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.24
smart00356	27	ZnF_C3H1 zinc finger.	98.21
KOG1040	325	consensus Polyadenylation factor I complex, subuni	98.13
smart00356	27	ZnF_C3H1 zinc finger.	98.08
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.07
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.01
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.67
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.31
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.02
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.84
KOG2333	614	consensus Uncharacterized conserved protein [Gener	96.82
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	96.71
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.31
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.95
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.87
KOG4791	667	consensus Uncharacterized conserved protein [Funct	94.97
COG5152	259	Uncharacterized conserved protein, contains RING a	94.68
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	94.17
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	94.03
COG5152	259	Uncharacterized conserved protein, contains RING a	93.96
KOG1763	343	consensus Uncharacterized conserved protein, conta	92.51
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	92.03
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	89.17
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	88.43
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	86.2

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.41  E-value=3.4e-13  Score=125.16  Aligned_cols=119  Identities=29%  Similarity=0.602  Sum_probs=88.3

Q ss_pred             ccChhhh-cCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC-CC
Q 024288           94 RLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY-GD  171 (269)
Q Consensus        94 ~~C~~f~-~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~-G~  171 (269)
                      ..|.++. ++.|.++..|++.|...+.+.....                 ..+......++|+.+|..|...|.|.| |+
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~-----------------~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge  149 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR-----------------RSRGERKPERYKTPLCRSFRKSGTCKYRGE  149 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCcc-----------------ccccccCcccccCCcceeeecCccccccCc
Confidence            6899997 7999999999999998555432210                 011222335789999999999999999 99


Q ss_pred             CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc-ccCcCCCCCCCc
Q 024288          172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH  250 (269)
Q Consensus       172 ~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f-~~G~C~~G~~C~  250 (269)
                      +|+|+|...+.....          ++             +          .......+||++|.+| .+|.|+||.+|+
T Consensus       150 ~crfah~~~e~r~~~----------~~-------------~----------~~~~~~~~kt~lC~~f~~tG~C~yG~rC~  196 (332)
T KOG1677|consen  150 QCRFAHGLEELRLPS----------SE-------------N----------QVGNPPKYKTKLCPKFQKTGLCKYGSRCR  196 (332)
T ss_pred             hhhhcCCcccccccc----------cc-------------h----------hhcCCCCCCCcCCCccccCCCCCCCCcCe
Confidence            999999975532110          00             0          0123468999999999 779999999999


Q ss_pred             cccCCccccccC
Q 024288          251 FAHGQSGILCCL  262 (269)
Q Consensus       251 FaHg~~e~~~~~  262 (269)
                      |+|+..++...+
T Consensus       197 F~H~~~~~~~~~  208 (332)
T KOG1677|consen  197 FIHGEPEDRASN  208 (332)
T ss_pred             ecCCCccccccc
Confidence            999999877543

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.29  E-value=2e-12  Score=120.07  Aligned_cols=82  Identities=39%  Similarity=0.801  Sum_probs=66.0

Q ss_pred             CCCCCCCccccccChhhh-cCCCCC-CCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhccccccccc
Q 024288           83 NKGITNIFFKTRLCAKFK-HGACRN-GENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKK  160 (269)
Q Consensus        83 ~~~~~~~~yKT~~C~~f~-~G~C~~-G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~  160 (269)
                      ........|||.+|..|. .|+|+| |++|+|+|+.+++|.+..  ..                 ......+|||++|.+
T Consensus       122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~--~~-----------------~~~~~~~~kt~lC~~  182 (332)
T KOG1677|consen  122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS--EN-----------------QVGNPPKYKTKLCPK  182 (332)
T ss_pred             ccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc--ch-----------------hhcCCCCCCCcCCCc
Confidence            445566789999999998 899999 999999999999985420  00                 011235899999999


Q ss_pred             ccCCCCCCCCCCCccCCCCcccc
Q 024288          161 FYNGEECPYGDRCNFLHEDPAKF  183 (269)
Q Consensus       161 f~~~g~C~~G~~C~f~H~~~~~~  183 (269)
                      |.++|.|+||.+|.|+|...+..
T Consensus       183 f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  183 FQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             cccCCCCCCCCcCeecCCCcccc
Confidence            99999999999999999977543

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.19  E-value=1.2e-11  Score=118.52  Aligned_cols=97  Identities=29%  Similarity=0.594  Sum_probs=80.8

Q ss_pred             ccccccChhhhcCCCCCCCCCCCCC-CCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCC
Q 024288           90 FFKTRLCAKFKHGACRNGENCNFAH-GMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECP  168 (269)
Q Consensus        90 ~yKT~~C~~f~~G~C~~G~~C~FaH-~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~  168 (269)
                      -||++.|..-   .|..|..|.|+| +....|+.|..                         ..|..+.|..|.+ |.|.
T Consensus       198 ~fKir~C~R~---~shDwteCPf~HpgEkARRRDPRk-------------------------yhYs~tpCPefrk-G~C~  248 (528)
T KOG1595|consen  198 SFKIRRCSRP---RSHDWTECPFAHPGEKARRRDPRK-------------------------YHYSSTPCPEFRK-GSCE  248 (528)
T ss_pred             eeeecccCCc---cCCCcccCCccCCCcccccCCccc-------------------------ccccCccCccccc-CCCC
Confidence            5899999875   799999999999 67777766543                         2567789998754 8999


Q ss_pred             CCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCcCCCCCC
Q 024288          169 YGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEK  248 (269)
Q Consensus       169 ~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~C~~G~~  248 (269)
                      .||.|.|+|+..+.                                         ..++..|||++|++-  |.|++ .-
T Consensus       249 rGD~CEyaHgvfEc-----------------------------------------wLHPa~YRT~~CkDg--~~C~R-rv  284 (528)
T KOG1595|consen  249 RGDSCEYAHGVFEC-----------------------------------------WLHPARYRTRKCKDG--GYCPR-RV  284 (528)
T ss_pred             CCCccccccceehh-----------------------------------------hcCHHHhccccccCC--CCCcc-ce
Confidence            99999999998663                                         234568999999988  99999 99


Q ss_pred             CccccCCcccc
Q 024288          249 CHFAHGQSGIL  259 (269)
Q Consensus       249 C~FaHg~~e~~  259 (269)
                      |.|||..++|+
T Consensus       285 CfFAH~~eqLR  295 (528)
T KOG1595|consen  285 CFFAHSPEQLR  295 (528)
T ss_pred             EeeecChHHhc
Confidence            99999999985

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.17  E-value=2.2e-11  Score=109.37  Aligned_cols=115  Identities=26%  Similarity=0.552  Sum_probs=92.1

Q ss_pred             CCCCcccc--ccChhhh-cCCCCC---CCCCCCC---CCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhccccc
Q 024288           86 ITNIFFKT--RLCAKFK-HGACRN---GENCNFA---HGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMK  156 (269)
Q Consensus        86 ~~~~~yKT--~~C~~f~-~G~C~~---G~~C~Fa---H~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~  156 (269)
                      .....|||  ++|.-|. .|+|.+   |+.|+|+   |+++++..-                         ..+..|||+
T Consensus       221 ~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k-------------------------~k~~~frTe  275 (351)
T COG5063         221 QNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSK-------------------------KKKQNFRTE  275 (351)
T ss_pred             ccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccccc-------------------------ccccccccC
Confidence            44468899  9999997 899999   9999999   999887421                         123478999


Q ss_pred             ccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 024288          157 LCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCI  236 (269)
Q Consensus       157 ~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~  236 (269)
                      .|++|...|.|+||.+|.|.|.+.+.+...    ++.                                 ...++...|.
T Consensus       276 Pcinwe~sGyc~yg~Rc~F~hgd~~~ie~~----~~~---------------------------------~~~y~~~~cr  318 (351)
T COG5063         276 PCINWEKSGYCPYGLRCCFKHGDDSDIEMY----EEA---------------------------------SLGYLDGPCR  318 (351)
T ss_pred             CccchhhcccCccccccccccCChhhcccc----ccc---------------------------------cccccccccc
Confidence            999999999999999999999987754421    110                                 1245566799


Q ss_pred             cc-ccCcCCCCCCCccccCCccccccC
Q 024288          237 KW-TQGQCPFGEKCHFAHGQSGILCCL  262 (269)
Q Consensus       237 ~f-~~G~C~~G~~C~FaHg~~e~~~~~  262 (269)
                      -+ ..|.|+.|-.|.+.|...-+..++
T Consensus       319 t~~~~g~~p~g~~~c~~~dkkn~~~s~  345 (351)
T COG5063         319 TRAKGGAFPSGGAVCKSFDKKNLDFSV  345 (351)
T ss_pred             cccccCccCCCCchhhccccchhhhhh
Confidence            99 889999999999999988777665

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.13  E-value=3.3e-11  Score=111.12  Aligned_cols=112  Identities=30%  Similarity=0.595  Sum_probs=82.2

Q ss_pred             ccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 024288           90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY  169 (269)
Q Consensus        90 ~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~  169 (269)
                      ..++++|++|+.|.|+.||.|.|+|.. ++.                                 |+..|.+|...|.|..
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe~-~~~---------------------------------k~rec~ff~~~g~c~~  119 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHEY-DLT---------------------------------KMRECKFFSLFGECTN  119 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhhh-hhc---------------------------------cccccccccccccccc
Confidence            668999999999999999999999987 442                                 3458999999999999


Q ss_pred             CCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCcCCCCCC-
Q 024288          170 GDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEK-  248 (269)
Q Consensus       170 G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~C~~G~~-  248 (269)
                      +..|.|.|.++......+..+.      .|....                 . .......++..+|..|..|.|+.|.+ 
T Consensus       120 ~~~c~y~h~dpqt~~k~c~~~~------~g~c~~-----------------g-~~c~~~h~~~~~c~~y~~gfC~~g~q~  175 (325)
T KOG1040|consen  120 GKDCPYLHGDPQTAIKKCKWYK------EGFCRG-----------------G-PSCKKRHERKVLCPPYNAGFCPKGPQR  175 (325)
T ss_pred             ccCCcccCCChhhhhhccchhh------hccCCC-----------------c-chhhhhhhcccCCCchhhhhccCCCCc
Confidence            9999999998532211111111      111100                 0 02233456668999999999999988 


Q ss_pred             CccccCCcccc
Q 024288          249 CHFAHGQSGIL  259 (269)
Q Consensus       249 C~FaHg~~e~~  259 (269)
                      |.+.|+...+.
T Consensus       176 c~~~hp~~~~~  186 (325)
T KOG1040|consen  176 CDMLHPEFQQP  186 (325)
T ss_pred             ccccCCCCCCC
Confidence            99999887654

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.01  E-value=1.1e-09  Score=98.58  Aligned_cols=76  Identities=33%  Similarity=0.776  Sum_probs=60.7

Q ss_pred             hhhcccc--cccccccCCCCCCC---CCCCccC---CCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 024288          149 QKIIHKM--KLCKKFYNGEECPY---GDRCNFL---HEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPV  220 (269)
Q Consensus       149 ~~~~~Kt--~~Ck~f~~~g~C~~---G~~C~f~---H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~  220 (269)
                      ...+|++  .+|..|...|.|++   |..|.|+   |+.-+. ..                                   
T Consensus       222 n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l-~~-----------------------------------  265 (351)
T COG5063         222 NKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNEL-KS-----------------------------------  265 (351)
T ss_pred             cchhhcCCHHHhhccCcCCCCccccccccccccccccccccc-cc-----------------------------------
Confidence            4477888  89999999999999   9999999   884331 00                                   


Q ss_pred             CCCCCCCCCccccccccc-ccCcCCCCCCCccccCCccccccCc
Q 024288          221 GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSGILCCLD  263 (269)
Q Consensus       221 ~~~~~~~~~~kt~lC~~f-~~G~C~~G~~C~FaHg~~e~~~~~~  263 (269)
                         ......++|..|+.| ..|.|++|.+|.|.||+.++.-..+
T Consensus       266 ---k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~  306 (351)
T COG5063         266 ---KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYE  306 (351)
T ss_pred             ---cccccccccCCccchhhcccCccccccccccCChhhccccc
Confidence               112357899999999 9999999999999999988754433

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.76  E-value=6.9e-09  Score=99.86  Aligned_cols=99  Identities=21%  Similarity=0.462  Sum_probs=79.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCc
Q 024288           47 QQPPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNW  126 (269)
Q Consensus        47 ~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~  126 (269)
                      ..-.||..|......+.+     +..++-.+..-++++.-.+-.|.-+.|..|++|.|+.||.|.|+|++-|.-.-|   
T Consensus       195 rMy~fKir~C~R~~shDw-----teCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHP---  266 (528)
T KOG1595|consen  195 RMYSFKIRRCSRPRSHDW-----TECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHP---  266 (528)
T ss_pred             EEEeeeecccCCccCCCc-----ccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceehhhcCH---
Confidence            356799988887766777     455565556667777778888999999999999999999999999998874432   


Q ss_pred             ccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCCCccCCCCcc
Q 024288          127 QELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPA  181 (269)
Q Consensus       127 ~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~  181 (269)
                                              .+|||++||.   .+.|++ .-|.|+|...+
T Consensus       267 ------------------------a~YRT~~CkD---g~~C~R-rvCfFAH~~eq  293 (528)
T KOG1595|consen  267 ------------------------ARYRTRKCKD---GGYCPR-RVCFFAHSPEQ  293 (528)
T ss_pred             ------------------------HHhccccccC---CCCCcc-ceEeeecChHH
Confidence                                    3799999994   488998 89999999543

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.58  E-value=1.5e-08  Score=60.01  Aligned_cols=25  Identities=52%  Similarity=1.185  Sum_probs=20.5

Q ss_pred             cccccChhhh-cCCCCCCCCCCCCCC
Q 024288           91 FKTRLCAKFK-HGACRNGENCNFAHG  115 (269)
Q Consensus        91 yKT~~C~~f~-~G~C~~G~~C~FaH~  115 (269)
                      |||++|++|+ .|.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            6899999998 599999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=98.57  E-value=6.5e-09  Score=93.22  Aligned_cols=108  Identities=28%  Similarity=0.583  Sum_probs=71.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCC
Q 024288           55 RNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGR  134 (269)
Q Consensus        55 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r  134 (269)
                      |..+..+.+.++-| ..+..+..+.+           |+++|.+|.+|+|..|+.|+|+|++...|..+.  .+++..+|
T Consensus        66 ~e~~~~e~~~lfkp-~~qkv~~gvDP-----------KSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK--~dly~d~r  131 (343)
T KOG1763|consen   66 KEEKQRELNELFKP-ADQKVPKGVDP-----------KSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEK--IDLYPDTR  131 (343)
T ss_pred             chHHHHHHHHhccc-cccccccCCCc-----------hHHHHHHHhccCCCCCCcccccchHHHhhhccc--hhccccch
Confidence            33333334455555 66666666666           999999999999999999999999987765543  34555444


Q ss_pred             CcccCCCCCCCCcchh--------hccc--c-cccccccC------CCC---CCCCC-CCccCCCCcccc
Q 024288          135 AEEDRSSGGNWDDDQK--------IIHK--M-KLCKKFYN------GEE---CPYGD-RCNFLHEDPAKF  183 (269)
Q Consensus       135 ~~~~~~~~~~~~~~~~--------~~~K--t-~~Ck~f~~------~g~---C~~G~-~C~f~H~~~~~~  183 (269)
                      .+       .|+++.-        ...+  | .+|++|..      .|+   ||+|. .|.|.|..+..+
T Consensus       132 de-------mWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~Gy  194 (343)
T KOG1763|consen  132 DE-------MWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEGY  194 (343)
T ss_pred             hh-------hhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcch
Confidence            43       3654310        0111  1 47987754      232   99985 899999988763

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.50  E-value=2.3e-08  Score=59.21  Aligned_cols=26  Identities=62%  Similarity=1.372  Sum_probs=20.6

Q ss_pred             ccccccccc-ccCcCCCCCCCccccCC
Q 024288          230 WKTKLCIKW-TQGQCPFGEKCHFAHGQ  255 (269)
Q Consensus       230 ~kt~lC~~f-~~G~C~~G~~C~FaHg~  255 (269)
                      +|+++|++| ..|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            578899999 77999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.49  E-value=7e-07  Score=81.05  Aligned_cols=60  Identities=27%  Similarity=0.630  Sum_probs=51.6

Q ss_pred             ccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 024288           90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY  169 (269)
Q Consensus        90 ~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~  169 (269)
                      .+..++|++|..|.|+.|..|.|+|+..-++.                                -+..|+.|...|.|..
T Consensus       101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s--------------------------------~~~~c~~Fs~~G~cs~  148 (285)
T COG5084         101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSS--------------------------------QGPPCRSFSLKGSCSS  148 (285)
T ss_pred             ccCCcccchhccccCcCCCccccccCCCcccc--------------------------------cCCCcccccccceecc
Confidence            57889999999999999999999998875431                                1247998989999999


Q ss_pred             CCCCccCCCCcc
Q 024288          170 GDRCNFLHEDPA  181 (269)
Q Consensus       170 G~~C~f~H~~~~  181 (269)
                      |..|.+.|.++.
T Consensus       149 g~~c~~~h~dp~  160 (285)
T COG5084         149 GPSCGYSHIDPD  160 (285)
T ss_pred             CCCCCccccCcc
Confidence            999999999854

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=98.34  E-value=9.5e-08  Score=83.48  Aligned_cols=84  Identities=35%  Similarity=0.771  Sum_probs=58.6

Q ss_pred             ccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCccc-CCCC-CCCCcchhhcccccccccccC---C--
Q 024288           92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEED-RSSG-GNWDDDQKIIHKMKLCKKFYN---G--  164 (269)
Q Consensus        92 KT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~-~~~~-~~~~~~~~~~~Kt~~Ck~f~~---~--  164 (269)
                      |+++|..|..++|..|+.|+|+|+.++.|....  .+|++.+|+... .++. .-|.      --.++|++|..   .  
T Consensus        84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK--~DLYsDvRd~~ed~pl~krP~i------ntd~VCkffieA~e~Gk  155 (299)
T COG5252          84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEK--PDLYSDVRDKEEDVPLGKRPWI------NTDRVCKFFIEAMESGK  155 (299)
T ss_pred             hhHHHHHhccCccccCchhhhhcchHHHhhhcc--cchhhhhhhhhccCCcccCCCC------ChhHHHHHHHHHHhcCC
Confidence            999999999999999999999999998876532  345555554432 2221 1111      11257987754   2  


Q ss_pred             -C---CCCCC-CCCccCCCCcccc
Q 024288          165 -E---ECPYG-DRCNFLHEDPAKF  183 (269)
Q Consensus       165 -g---~C~~G-~~C~f~H~~~~~~  183 (269)
                       |   .||+| .+|.|.|..++.+
T Consensus       156 Ygw~W~CPng~~~C~y~H~Lp~Gy  179 (299)
T COG5252         156 YGWGWTCPNGNMRCSYIHKLPDGY  179 (299)
T ss_pred             ccceeeCCCCCceeeeeeccCccc
Confidence             2   29998 6899999988753

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.24  E-value=4.8e-07  Score=78.94  Aligned_cols=108  Identities=23%  Similarity=0.523  Sum_probs=66.9

Q ss_pred             cccChhhh-cCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 024288           93 TRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD  171 (269)
Q Consensus        93 T~~C~~f~-~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~  171 (269)
                      .+.|++|. .|.|-.|..|+|.|....                                   | .+|.+|.. |.|...+
T Consensus       206 avycryynangicgkgaacrfvheptr-----------------------------------k-ticpkfln-grcnkae  248 (377)
T KOG1492|consen  206 AVYCRYYNANGICGKGAACRFVHEPTR-----------------------------------K-TICPKFLN-GRCNKAE  248 (377)
T ss_pred             eeEEEEecCCCcccCCceeeeeccccc-----------------------------------c-ccChHHhc-CccCchh
Confidence            45799998 899999999999996432                                   1 37877754 6888888


Q ss_pred             CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc-ccCcCCCCCCCc
Q 024288          172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH  250 (269)
Q Consensus       172 ~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f-~~G~C~~G~~C~  250 (269)
                      .|.+.|+.....-+++.      -+-+|...-|        .+-..      +.. -.....+|..| .-|+|..|..|.
T Consensus       249 dcnlsheldprripacr------yfllgkcnnp--------ncryv------hih-ysenapicfefakygfcelgtsck  307 (377)
T KOG1492|consen  249 DCNLSHELDPRRIPACR------YFLLGKCNNP--------NCRYV------HIH-YSENAPICFEFAKYGFCELGTSCK  307 (377)
T ss_pred             cCCcccccCccccchhh------hhhhccCCCC--------CceEE------EEe-ecCCCceeeeehhcceeccccccc
Confidence            88888885432212211      1112221100        00000      000 01123579999 889999999999


Q ss_pred             cccCCccc
Q 024288          251 FAHGQSGI  258 (269)
Q Consensus       251 FaHg~~e~  258 (269)
                      -.|-..+-
T Consensus       308 nqhilqct  315 (377)
T KOG1492|consen  308 NQHILQCT  315 (377)
T ss_pred             cceeeeec
Confidence            99876653

>smart00356 ZnF_C3H1 zinc finger

Probab=98.21  E-value=8.1e-07  Score=52.03  Aligned_cols=26  Identities=50%  Similarity=1.100  Sum_probs=24.0

Q ss_pred             cccccChhhhcCCCCCCCCCCCCCCC
Q 024288           91 FKTRLCAKFKHGACRNGENCNFAHGM  116 (269)
Q Consensus        91 yKT~~C~~f~~G~C~~G~~C~FaH~~  116 (269)
                      +|+.+|++|.+|.|.+|+.|+|+|+.
T Consensus         2 ~k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence            68899999999999999999999973

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=98.13  E-value=2e-06  Score=79.71  Aligned_cols=110  Identities=25%  Similarity=0.425  Sum_probs=68.7

Q ss_pred             cChhhhc--CCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCC
Q 024288           95 LCAKFKH--GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDR  172 (269)
Q Consensus        95 ~C~~f~~--G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~~  172 (269)
                      .|..+..  -.|.+|..|.+.|...+.                                ..+..+||+| ..|.|..|+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~vcK~~-l~glC~kgD~   93 (325)
T KOG1040|consen   47 TCEFNESREKPCERGPICPKSHNDVSD--------------------------------SRGKVVCKHW-LRGLCKKGDQ   93 (325)
T ss_pred             hhcccccCCCCccCCCCCccccCCccc--------------------------------cCCceeehhh-hhhhhhccCc
Confidence            4666654  579999999999976531                                2345799966 5689999999


Q ss_pred             CccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCcCCCCCCCccc
Q 024288          173 CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFA  252 (269)
Q Consensus       173 C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~C~~G~~C~Fa  252 (269)
                      |.|+|+. +..     +.++...+++        +|...++-+-.  .-  +. ....+...|+.|..|+|+.|+.|++.
T Consensus        94 C~Flhe~-~~~-----k~rec~ff~~--------~g~c~~~~~c~--y~--h~-dpqt~~k~c~~~~~g~c~~g~~c~~~  154 (325)
T KOG1040|consen   94 CEFLHEY-DLT-----KMRECKFFSL--------FGECTNGKDCP--YL--HG-DPQTAIKKCKWYKEGFCRGGPSCKKR  154 (325)
T ss_pred             Ccchhhh-hhc-----cccccccccc--------ccccccccCCc--cc--CC-ChhhhhhccchhhhccCCCcchhhhh
Confidence            9999986 221     2233322222        12222211100  00  00 01345567998999999999999999


Q ss_pred             cCCc
Q 024288          253 HGQS  256 (269)
Q Consensus       253 Hg~~  256 (269)
                      |-..
T Consensus       155 h~~~  158 (325)
T KOG1040|consen  155 HERK  158 (325)
T ss_pred             hhcc
Confidence            9665

>smart00356 ZnF_C3H1 zinc finger

Probab=98.08  E-value=2.2e-06  Score=50.11  Aligned_cols=26  Identities=46%  Similarity=1.174  Sum_probs=23.3

Q ss_pred             cccccccccccCcCCCCCCCccccCC
Q 024288          230 WKTKLCIKWTQGQCPFGEKCHFAHGQ  255 (269)
Q Consensus       230 ~kt~lC~~f~~G~C~~G~~C~FaHg~  255 (269)
                      +|+.+|.+|.+|.|.+|++|+|+|+.
T Consensus         2 ~k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence            46778999999999999999999973

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.07  E-value=2.3e-06  Score=74.67  Aligned_cols=103  Identities=22%  Similarity=0.566  Sum_probs=67.3

Q ss_pred             ccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 024288           92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD  171 (269)
Q Consensus        92 KT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~  171 (269)
                      +..+|.+|+.|.|...+.|...|.+...|.|                                  .|+ |+.-|.|.. .
T Consensus       232 rkticpkflngrcnkaedcnlsheldprrip----------------------------------acr-yfllgkcnn-p  275 (377)
T KOG1492|consen  232 RKTICPKFLNGRCNKAEDCNLSHELDPRRIP----------------------------------ACR-YFLLGKCNN-P  275 (377)
T ss_pred             ccccChHHhcCccCchhcCCcccccCccccc----------------------------------hhh-hhhhccCCC-C
Confidence            4568999999999999999999999877654                                  698 445678985 7


Q ss_pred             CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc-ccCcCCCCCCCc
Q 024288          172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH  250 (269)
Q Consensus       172 ~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f-~~G~C~~G~~C~  250 (269)
                      +|+|.|..-+.--+-+-.+..-.-..+|++.                         .....-.|..| +-|.|.. ..|.
T Consensus       276 ncryvhihysenapicfefakygfcelgtsc-------------------------knqhilqctdyamfgscnn-pqcs  329 (377)
T KOG1492|consen  276 NCRYVHIHYSENAPICFEFAKYGFCELGTSC-------------------------KNQHILQCTDYAMFGSCNN-PQCS  329 (377)
T ss_pred             CceEEEEeecCCCceeeeehhcceecccccc-------------------------ccceeeeecchhhhcCCCC-Ccce
Confidence            9999987533211111111110011111110                         11122359999 8999988 8999


Q ss_pred             cccCCc
Q 024288          251 FAHGQS  256 (269)
Q Consensus       251 FaHg~~  256 (269)
                      ..||.-
T Consensus       330 lyhgav  335 (377)
T KOG1492|consen  330 LYHGAV  335 (377)
T ss_pred             eeccee
Confidence            999854

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.01  E-value=5.1e-06  Score=75.99  Aligned_cols=62  Identities=21%  Similarity=0.595  Sum_probs=46.9

Q ss_pred             ccccccChhhhcCCCCCCCC-CCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCC
Q 024288           90 FFKTRLCAKFKHGACRNGEN-CNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECP  168 (269)
Q Consensus        90 ~yKT~~C~~f~~G~C~~G~~-C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~  168 (269)
                      +-.-++|+.|+.|+|++|+. |+|+|......+.                             +.+...|..| .+|.|.
T Consensus        34 wl~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~-----------------------------~g~v~aC~Ds-~kgrCs   83 (331)
T KOG2494|consen   34 WLTLEVCREFLRNTCSRGDRECKFAHPPKNCQVS-----------------------------NGRVIACFDS-QKGRCS   83 (331)
T ss_pred             hhHHHHHHHHHhccccCCCccccccCCCCCCCcc-----------------------------CCeEEEEecc-ccCccC
Confidence            33558999999999999999 9999987644221                             2345689755 567999


Q ss_pred             CCCCCccCCCCccc
Q 024288          169 YGDRCNFLHEDPAK  182 (269)
Q Consensus       169 ~G~~C~f~H~~~~~  182 (269)
                      + ++|+|+|...+.
T Consensus        84 R-~nCkylHpp~hl   96 (331)
T KOG2494|consen   84 R-ENCKYLHPPQHL   96 (331)
T ss_pred             c-ccceecCCChhh
Confidence            6 789999996543

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.67  E-value=1.6e-05  Score=72.77  Aligned_cols=63  Identities=25%  Similarity=0.621  Sum_probs=47.4

Q ss_pred             ccccccccCCCCCCCCCC-CccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 024288          155 MKLCKKFYNGEECPYGDR-CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTK  233 (269)
Q Consensus       155 t~~Ck~f~~~g~C~~G~~-C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~  233 (269)
                      .++|+.|. .+.|.+|++ |+|+|.... ...                                          ..-+-.
T Consensus        37 ~eVCReF~-rn~C~R~d~~CkfaHP~~~-~~V------------------------------------------~~g~v~   72 (331)
T KOG2494|consen   37 LEVCREFL-RNTCSRGDRECKFAHPPKN-CQV------------------------------------------SNGRVI   72 (331)
T ss_pred             HHHHHHHH-hccccCCCccccccCCCCC-CCc------------------------------------------cCCeEE
Confidence            36899886 479999999 999998642 100                                          112234


Q ss_pred             cccccccCcCCCCCCCccccCCccccccC
Q 024288          234 LCIKWTQGQCPFGEKCHFAHGQSGILCCL  262 (269)
Q Consensus       234 lC~~f~~G~C~~G~~C~FaHg~~e~~~~~  262 (269)
                      .|.++++|.|.+ ++|+|+|+...+.-.+
T Consensus        73 aC~Ds~kgrCsR-~nCkylHpp~hlkdql  100 (331)
T KOG2494|consen   73 ACFDSQKGRCSR-ENCKYLHPPQHLKDQL  100 (331)
T ss_pred             EEeccccCccCc-ccceecCCChhhhhhh
Confidence            699999999999 8899999998876544

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.31  E-value=9.7e-05  Score=71.09  Aligned_cols=65  Identities=32%  Similarity=0.724  Sum_probs=45.7

Q ss_pred             cccccccccCC--CCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288          154 KMKLCKKFYNG--EECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (269)
Q Consensus       154 Kt~~Ck~f~~~--g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k  231 (269)
                      +..+|.....+  ..|.||++|+|.|+....+...               ++                         ...
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK---------------~~-------------------------Dig  114 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK---------------AP-------------------------DIG  114 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhcc---------------Cc-------------------------ccC
Confidence            34689877776  5799999999999964422111               00                         000


Q ss_pred             ccccccc-ccCcCCCCCCCcc--ccCCcccc
Q 024288          232 TKLCIKW-TQGQCPFGEKCHF--AHGQSGIL  259 (269)
Q Consensus       232 t~lC~~f-~~G~C~~G~~C~F--aHg~~e~~  259 (269)
                       .-|..| ..|.|++|-+|||  +|-+.+-.
T Consensus       115 -~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~  144 (614)
T KOG2333|consen  115 -PSCPVFESLGFCPYGFKCRFLGAHLDIEGN  144 (614)
T ss_pred             -CccceeeccccCCccceeehhhcccCcccc
Confidence             249999 9999999999999  66555543

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.00025  Score=67.89  Aligned_cols=80  Identities=25%  Similarity=0.514  Sum_probs=60.2

Q ss_pred             ccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCCC
Q 024288           94 RLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRC  173 (269)
Q Consensus        94 ~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~~C  173 (269)
                      ..|.+|+..+|++++.|.|.|...-+.     |                            ...|.+|...-.|.  +.|
T Consensus         4 ~dcyff~ys~cKk~d~c~~rh~E~al~-----n----------------------------~t~C~~w~~~~~C~--k~C   48 (667)
T KOG4791|consen    4 EDCYFFFYSTCKKGDSCPFRHCEAALG-----N----------------------------ETVCTLWQEGRCCR--KVC   48 (667)
T ss_pred             ccchhhhhhhhhccCcCcchhhHHHhc-----C----------------------------cchhhhhhhcCccc--ccc
Confidence            358889888999999999999766441     1                            14799887765566  489


Q ss_pred             ccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCc-CCCCCCCccc
Q 024288          174 NFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQ-CPFGEKCHFA  252 (269)
Q Consensus       174 ~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~-C~~G~~C~Fa  252 (269)
                      .|.|......                                              ....+|.+|.++. |.. ++|-|.
T Consensus        49 ~YRHSe~~~k----------------------------------------------r~e~~CYwe~~p~gC~k-~~CgfR   81 (667)
T KOG4791|consen   49 RYRHSEIDKK----------------------------------------------RSEIPCYWENQPTGCQK-LNCGFR   81 (667)
T ss_pred             cchhhHHhhh----------------------------------------------cCcccceeecCCCccCC-Cccccc
Confidence            9999975421                                              1335798887777 998 999999


Q ss_pred             cCC
Q 024288          253 HGQ  255 (269)
Q Consensus       253 Hg~  255 (269)
                      |..
T Consensus        82 H~~   84 (667)
T KOG4791|consen   82 HNR   84 (667)
T ss_pred             cCC
Confidence            943

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.84  E-value=0.00046  Score=65.02  Aligned_cols=39  Identities=38%  Similarity=0.778  Sum_probs=33.7

Q ss_pred             CCCcccccccccccCcCCCCCCCccccCCccccccCccc
Q 024288          227 PVYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDHY  265 (269)
Q Consensus       227 ~~~~kt~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~~~~  265 (269)
                      |......+|+||..|.|+||++|+|.||..-..-+|.+|
T Consensus       135 PTh~sMkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~y  173 (486)
T KOG2185|consen  135 PTHESMKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNY  173 (486)
T ss_pred             CcchhhccchHhhccccccCcccccccCcccchhhcccC
Confidence            345566789999999999999999999998888888777

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=96.82  E-value=0.0005  Score=66.32  Aligned_cols=63  Identities=33%  Similarity=0.674  Sum_probs=46.7

Q ss_pred             ccccChhhhcC---CCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCC
Q 024288           92 KTRLCAKFKHG---ACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECP  168 (269)
Q Consensus        92 KT~~C~~f~~G---~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~  168 (269)
                      +..+|.....|   .|.+|++|+|.|+++-.-..-  ..                         .-...|..|...|.|+
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK--~~-------------------------Dig~~Cp~f~s~G~Cp  127 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK--AP-------------------------DIGPSCPVFESLGFCP  127 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhcc--Cc-------------------------ccCCccceeeccccCC
Confidence            56799998865   799999999999988542110  00                         0013699999999999


Q ss_pred             CCCCCcc--CCCCcc
Q 024288          169 YGDRCNF--LHEDPA  181 (269)
Q Consensus       169 ~G~~C~f--~H~~~~  181 (269)
                      +|-.|+|  +|.+.+
T Consensus       128 ~G~~CRFl~aHld~~  142 (614)
T KOG2333|consen  128 YGFKCRFLGAHLDIE  142 (614)
T ss_pred             ccceeehhhcccCcc
Confidence            9999999  565443

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=96.71  E-value=0.0028  Score=57.78  Aligned_cols=54  Identities=28%  Similarity=0.632  Sum_probs=42.1

Q ss_pred             cccChhh-hcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccC--CCCCCC
Q 024288           93 TRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYN--GEECPY  169 (269)
Q Consensus        93 T~~C~~f-~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~--~g~C~~  169 (269)
                      ...|+.| ..|.|..|..|.+.|.+...+.                                  ..|..|..  .+.|++
T Consensus       134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~----------------------------------~~~~~~~~~~~~f~p~  179 (285)
T COG5084         134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFA----------------------------------GNCDQYSGATYGFCPL  179 (285)
T ss_pred             CCCcccccccceeccCCCCCccccCccccc----------------------------------ccccccCcccccccCC
Confidence            5679999 5899999999999998732211                                  25664442  678999


Q ss_pred             CCCCccCCCCc
Q 024288          170 GDRCNFLHEDP  180 (269)
Q Consensus       170 G~~C~f~H~~~  180 (269)
                      |..|.+.|...
T Consensus       180 g~~c~~~H~~~  190 (285)
T COG5084         180 GASCKFSHTLK  190 (285)
T ss_pred             CCccccccccc
Confidence            99999999964

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.31  E-value=0.0026  Score=34.38  Aligned_cols=19  Identities=32%  Similarity=0.738  Sum_probs=16.1

Q ss_pred             cccccccCcCCCCCCCccccC
Q 024288          234 LCIKWTQGQCPFGEKCHFAHG  254 (269)
Q Consensus       234 lC~~f~~G~C~~G~~C~FaHg  254 (269)
                      +|++|..  |++|++|.|+|+
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            4887844  999999999995

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.95  E-value=0.0034  Score=59.32  Aligned_cols=26  Identities=46%  Similarity=1.077  Sum_probs=23.4

Q ss_pred             ccccChhhhcCCCCCCCCCCCCCCCC
Q 024288           92 KTRLCAKFKHGACRNGENCNFAHGME  117 (269)
Q Consensus        92 KT~~C~~f~~G~C~~G~~C~FaH~~~  117 (269)
                      .-.+|.+|+.|.|+||++|+|+|+..
T Consensus       139 sMkpC~ffLeg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  139 SMKPCKFFLEGRCRFGENCRFSHGLD  164 (486)
T ss_pred             hhccchHhhccccccCcccccccCcc
Confidence            34689999999999999999999865

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.87  E-value=0.0051  Score=33.19  Aligned_cols=19  Identities=42%  Similarity=0.915  Sum_probs=15.9

Q ss_pred             cChhhhcCCCCCCCCCCCCCC
Q 024288           95 LCAKFKHGACRNGENCNFAHG  115 (269)
Q Consensus        95 ~C~~f~~G~C~~G~~C~FaH~  115 (269)
                      +|++|..  |++|+.|.|+|.
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            4886655  999999999995

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.97  E-value=0.024  Score=54.73  Aligned_cols=110  Identities=16%  Similarity=0.212  Sum_probs=63.7

Q ss_pred             ccChhhhcC-CCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCC
Q 024288           94 RLCAKFKHG-ACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDR  172 (269)
Q Consensus        94 ~~C~~f~~G-~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G~~  172 (269)
                      ..|.+|+.+ .|+.  -|.|.|..-.+.+                                ....|-.+.+...|.. ++
T Consensus        33 t~C~~w~~~~~C~k--~C~YRHSe~~~kr--------------------------------~e~~CYwe~~p~gC~k-~~   77 (667)
T KOG4791|consen   33 TVCTLWQEGRCCRK--VCRYRHSEIDKKR--------------------------------SEIPCYWENQPTGCQK-LN   77 (667)
T ss_pred             chhhhhhhcCcccc--cccchhhHHhhhc--------------------------------CcccceeecCCCccCC-Cc
Confidence            469999966 4565  8999998765521                                1247864444444884 89


Q ss_pred             CccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCcCCCCCCCccc
Q 024288          173 CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFA  252 (269)
Q Consensus       173 C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt~lC~~f~~G~C~~G~~C~Fa  252 (269)
                      |-|.|..+. +...-.-..                  +..++|..++.-+........-...|-+|++|.|-.||-|-|+
T Consensus        78 CgfRH~~pP-Lkg~l~~~p------------------~~pe~ev~~~~~SAq~~sV~~~p~P~l~~~K~~e~~~D~~s~L  138 (667)
T KOG4791|consen   78 CGFRHNRPP-LKGVLPTVP------------------ESPEEEVKASQLSAQQNSVQSNPSPQLRSVKKVESSEDVPSPL  138 (667)
T ss_pred             cccccCCCc-hhhhccCCC------------------CCcccccccccccCCCcccccCCchHHHHhhhhhhhccccccC
Confidence            999997532 111100000                  0111222221111111122233346888999999999999999


Q ss_pred             cCCcc
Q 024288          253 HGQSG  257 (269)
Q Consensus       253 Hg~~e  257 (269)
                      |....
T Consensus       139 h~P~A  143 (667)
T KOG4791|consen  139 HPPVA  143 (667)
T ss_pred             CCCcc
Confidence            96633

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.68  E-value=0.012  Score=50.74  Aligned_cols=29  Identities=28%  Similarity=0.848  Sum_probs=24.2

Q ss_pred             cccccccc-ccCcCCCCCCCccccCCcccc
Q 024288          231 KTKLCIKW-TQGQCPFGEKCHFAHGQSGIL  259 (269)
Q Consensus       231 kt~lC~~f-~~G~C~~G~~C~FaHg~~e~~  259 (269)
                      ....|+.| .+|+|.||+.|.|+|......
T Consensus       140 qpdVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         140 QPDVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             CcccccchhhcccccCCchhhhhhhhhhhh
Confidence            33469999 999999999999999876443

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=94.17  E-value=0.11  Score=52.17  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=13.6

Q ss_pred             cChhhhcCCCCCCCCCCCCCCCCC
Q 024288           95 LCAKFKHGACRNGENCNFAHGMED  118 (269)
Q Consensus        95 ~C~~f~~G~C~~G~~C~FaH~~~e  118 (269)
                      .|+++..  |. ++.|.|+|....
T Consensus       546 ~Cky~~~--Ct-~a~Ce~~HPtaa  566 (681)
T KOG3702|consen  546 RCKYGPA--CT-SAECEFAHPTAA  566 (681)
T ss_pred             cccCCCc--CC-chhhhhcCCcch
Confidence            4666654  55 677888886543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=0.062  Score=50.50  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=27.2

Q ss_pred             ccccccccccCcCCCCCCCccccCCccccccC
Q 024288          231 KTKLCIKWTQGQCPFGEKCHFAHGQSGILCCL  262 (269)
Q Consensus       231 kt~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~  262 (269)
                      ++++|.+-..|.|.+|..|.++|+.....+++
T Consensus        92 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l  123 (344)
T KOG1039|consen   92 STQENPYSNHGQCRFGNGDVTLNGNNPESCGL  123 (344)
T ss_pred             ccccCccccccccccCCccccccccccccccc
Confidence            45788888899999999999999887777765

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.96  E-value=0.02  Score=49.38  Aligned_cols=31  Identities=32%  Similarity=0.786  Sum_probs=26.7

Q ss_pred             CccccccChhhh-cCCCCCCCCCCCCCCCCCc
Q 024288           89 IFFKTRLCAKFK-HGACRNGENCNFAHGMEDL  119 (269)
Q Consensus        89 ~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e~  119 (269)
                      +-|.-.+|+.|. +|.|-||+.|+|.|..++.
T Consensus       137 iD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         137 IDTQPDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             eecCcccccchhhcccccCCchhhhhhhhhhh
Confidence            345667999998 8999999999999998765

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=92.51  E-value=0.044  Score=49.92  Aligned_cols=35  Identities=31%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             CCcccccccccccCcCCCCCCCccccCCccccccC
Q 024288          228 VYWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCL  262 (269)
Q Consensus       228 ~~~kt~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~  262 (269)
                      ...|+.+|.+|..|.|..|+.|.|+|+....+..-
T Consensus        88 vDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~e  122 (343)
T KOG1763|consen   88 VDPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKE  122 (343)
T ss_pred             CCchHHHHHHHhccCCCCCCcccccchHHHhhhcc
Confidence            35578899999999999999999999988766443

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.03  E-value=0.051  Score=49.59  Aligned_cols=29  Identities=28%  Similarity=0.911  Sum_probs=24.7

Q ss_pred             ccccccccc-ccCcCCCCCCCccccCCccc
Q 024288          230 WKTKLCIKW-TQGQCPFGEKCHFAHGQSGI  258 (269)
Q Consensus       230 ~kt~lC~~f-~~G~C~~G~~C~FaHg~~e~  258 (269)
                      +..-+|+.| .+|+|.+|+.|.|+|...+.
T Consensus       184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            334589999 99999999999999987654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.17  E-value=0.14  Score=48.17  Aligned_cols=24  Identities=25%  Similarity=0.917  Sum_probs=23.0

Q ss_pred             ccChhhhcCCCCCCCCCCCCCCCC
Q 024288           94 RLCAKFKHGACRNGENCNFAHGME  117 (269)
Q Consensus        94 ~~C~~f~~G~C~~G~~C~FaH~~~  117 (269)
                      .||++|+.|.|++|+.|+|.|...
T Consensus         9 tic~~~~~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQKGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcccccccccceeeeeccCc
Confidence            799999999999999999999887

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.43  E-value=0.16  Score=46.42  Aligned_cols=32  Identities=31%  Similarity=0.830  Sum_probs=27.5

Q ss_pred             CCccccccChhhh-cCCCCCCCCCCCCCCCCCc
Q 024288           88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMEDL  119 (269)
Q Consensus        88 ~~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e~  119 (269)
                      .+-|--.+|+.|. +|.|-||+.|+|.|...+.
T Consensus       181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             eeecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            3446677999998 9999999999999998765

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=86.20  E-value=0.45  Score=26.91  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=16.9

Q ss_pred             cccccccC-cCCCCCCCccccC
Q 024288          234 LCIKWTQG-QCPFGEKCHFAHG  254 (269)
Q Consensus       234 lC~~f~~G-~C~~G~~C~FaHg  254 (269)
                      +|.|-.+| .|.. +.|.|.|-
T Consensus         2 lC~yEl~Gg~Cnd-~~C~~QHf   22 (23)
T PF10650_consen    2 LCPYELTGGVCND-PDCEFQHF   22 (23)
T ss_pred             CCccccCCCeeCC-CCCCcccc
Confidence            79988666 9987 89999993

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
1m9o_A	77	Nmr Structure Of The First Zinc Binding Domain Of N		4e-06
1rgo_A	70	Structural Basis For Recognition Of The Mrna Class		1e-05

>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 26/93 (27%)
Query: 86  ITNIFFKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGN 144
            T+  +KT LC  + + G CR G  C FAHG+ +LRQ                       
Sbjct: 5   TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA---------------------- 42
Query: 145 WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              ++   +K +LC KF     CPYG RC+F+H
Sbjct: 43  ---NRHPKYKTELCHKFKLQGRCPYGSRCHFIH 72

>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 26/88 (29%)
Query: 91  FKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           +KT LC  F+  G C+ GE C FAHG  +LR    + +                      
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPK---------------------- 41
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              +K +LC+ F+    CPYG RC+F+H
Sbjct: 42  ---YKTELCRTFHTIGFCPYGPRCHFIH 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	5e-16
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-11
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-08
2rhk_C	72	Cleavage and polyadenylation specificity factor su	1e-06
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	4e-06
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	5e-06
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	1e-04
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	5e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 70.0 bits (171), Expect = 5e-16
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 26/97 (26%)

Query: 84  KGITNIFFKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSG 142
              T+  +KT LC  + + G CR G  C FAHG+ +LRQ   + +               
Sbjct: 3   HMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPK--------------- 47

Query: 143 GNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHED 179
                     +K +LC KF     CPYG RC+F+H  
Sbjct: 48  ----------YKTELCHKFKLQGRCPYGSRCHFIHNP 74

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 56.5 bits (136), Expect = 6e-11
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 40/105 (38%)

Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
           +K +LC+ +     C YG +C F H                                   
Sbjct: 10  YKTELCRTYSESGRCRYGAKCQFAH----------------------------------- 34

Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQS 256
                        +   +KT+LC K+  QG+CP+G +CHF H  +
Sbjct: 35  ----GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 221 GSNCVKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHGQSGILCCLDH 264
           GS+      +KT+LC  +++ G+C +G KC FAHG   +     H
Sbjct: 1   GSHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRH 45

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 35/91 (38%)

Query: 92  KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKI 151
           KT +C  +  G C+ G+ C F H  +                                  
Sbjct: 15  KTVVCKHWLRGLCKKGDQCEFLHEYD---------------------------------- 40

Query: 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAK 182
           + KM  C  +    EC     C FLH DP  
Sbjct: 41  MTKMSECYFYSKFGECS-NKECPFLHIDPES 70

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 35/91 (38%)

Query: 92  KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKI 151
           KT +C  +  G C+ G+ C F H                                  +  
Sbjct: 9   KTVVCKHWLRGLCKKGDQCEFLH----------------------------------EYD 34

Query: 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAK 182
           + KM  C  +    EC     C FLH DP  
Sbjct: 35  MTKMPECYFYSKFGEC-SNKECPFLHIDPES 64

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 39/91 (42%)

Query: 92  KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKI 151
           K  LC  +  G C   ENC + HG                                    
Sbjct: 12  KRELCKFYITGFCARAENCPYMHGD----------------------------------- 36

Query: 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAK 182
                 CK ++    C  GD C F H+   +
Sbjct: 37  ----FPCKLYHTTGNCINGDDCMFSHDPLTE 63

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 94  RLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQE 128
            +C ++ +G C  G +C FAHG  +L +    W+E
Sbjct: 21  SICDRYMNGTCPEGNSCKFAHGNAELHE----WEE 51

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 233 KLCIKWTQGQCPFGEKCHFAHGQ 255
            +C ++  G CP G  C FAHG 
Sbjct: 21  SICDRYMNGTCPEGNSCKFAHGN 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.63
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.51
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.44
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.22
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.2
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.05
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.0
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.0
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.89
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.86
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.84
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.72
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.67
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.61
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.5
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.5
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.5
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.25
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.99
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.56
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.44
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	95.27
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	93.86
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	93.66
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.73

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.63  E-value=8.8e-17  Score=117.67  Aligned_cols=69  Identities=42%  Similarity=0.912  Sum_probs=31.4

Q ss_pred             CCccccccChhhh-cCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 024288           88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE  166 (269)
Q Consensus        88 ~~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~  166 (269)
                      +.+|||++|++|+ +|.|++|+.|+|+|+..+++....                         ...+|+.+|++|...|.
T Consensus         7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~-------------------------~~~~k~~~C~~f~~~G~   61 (77)
T 1m9o_A            7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR-------------------------HPKYKTELCHKFKLQGR   61 (77)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-------------------------------------------
T ss_pred             CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc-------------------------cccccCCcccchhhCcC
Confidence            4578999999996 899999999999999998864321                         12577899998998999


Q ss_pred             CCCCCCCccCCCCcc
Q 024288          167 CPYGDRCNFLHEDPA  181 (269)
Q Consensus       167 C~~G~~C~f~H~~~~  181 (269)
                      |++|++|+|+|...+
T Consensus        62 C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           62 CPYGSRCHFIHNPTE   76 (77)
T ss_dssp             ---------------
T ss_pred             CCCcCcCCCCCCCCC
Confidence            999999999998643

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.51  E-value=5.1e-15  Score=108.22  Aligned_cols=69  Identities=33%  Similarity=0.760  Sum_probs=28.3

Q ss_pred             hcccccccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 024288          151 IIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYW  230 (269)
Q Consensus       151 ~~~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~  230 (269)
                      ..+|+++|++|...|.|++|++|.|+|+..+....                                       .....+
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~---------------------------------------~~~~~~   48 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA---------------------------------------NRHPKY   48 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT---------------------------------------C-----
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccc---------------------------------------cccccc
Confidence            37899999988888999999999999997542210                                       001356


Q ss_pred             cccccccc-ccCcCCCCCCCccccCCccc
Q 024288          231 KTKLCIKW-TQGQCPFGEKCHFAHGQSGI  258 (269)
Q Consensus       231 kt~lC~~f-~~G~C~~G~~C~FaHg~~e~  258 (269)
                      ++.+|++| ..|.|++|++|+|+|+..|+
T Consensus        49 k~~~C~~f~~~G~C~~G~~C~f~H~~~e~   77 (77)
T 1m9o_A           49 KTELCHKFKLQGRCPYGSRCHFIHNPTED   77 (77)
T ss_dssp             -----------------------------
T ss_pred             cCCcccchhhCcCCCCcCcCCCCCCCCCC
Confidence            88999988 89999999999999998774

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=9.6e-14  Score=101.74  Aligned_cols=57  Identities=35%  Similarity=0.727  Sum_probs=48.7

Q ss_pred             ccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 024288           90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY  169 (269)
Q Consensus        90 ~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~  169 (269)
                      .+|+++|++|+.|.|++|++|.|+|+....                                  ++.+|++|.+.|.|. 
T Consensus         7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~----------------------------------~~~~C~~f~~~G~C~-   51 (77)
T 2d9n_A            7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMT----------------------------------KMPECYFYSKFGECS-   51 (77)
T ss_dssp             CCTTSBCHHHHTTCCSCTTSSSSBCSCCTT----------------------------------TSCBCHHHHHTCCCC-
T ss_pred             CCcceeCHhHccCcCCCCCCCCCccccccC----------------------------------cCCCCcccCCCCccC-
Confidence            459999999999999999999999987643                                  235899887769999 


Q ss_pred             CCCCccCCCCcc
Q 024288          170 GDRCNFLHEDPA  181 (269)
Q Consensus       170 G~~C~f~H~~~~  181 (269)
                      |++|+|+|..++
T Consensus        52 ~~~C~f~H~~~~   63 (77)
T 2d9n_A           52 NKECPFLHIDPE   63 (77)
T ss_dssp             CSSCSSBCCCTT
T ss_pred             CCCeeccCCCcc
Confidence            899999999643

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.22  E-value=3.8e-12  Score=91.98  Aligned_cols=59  Identities=34%  Similarity=0.674  Sum_probs=49.3

Q ss_pred             CCccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCC
Q 024288           88 NIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC  167 (269)
Q Consensus        88 ~~~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C  167 (269)
                      ....|+++|++|+.|.|++|+.|.|+|+....                                  ++.+|++|.+.|.|
T Consensus        11 ~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~----------------------------------~~~~C~~f~~~G~C   56 (72)
T 2rhk_C           11 MSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT----------------------------------KMSECYFYSKFGEC   56 (72)
T ss_dssp             SSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTT----------------------------------SCCBCHHHHHHSCC
T ss_pred             CCCCcCeeCHHHhcCCCCCCCCCCCccccccc----------------------------------cCCcccccCCCCCC
Confidence            34568999999999999999999999986533                                  23589977765899


Q ss_pred             CCCCCCccCCCCcc
Q 024288          168 PYGDRCNFLHEDPA  181 (269)
Q Consensus       168 ~~G~~C~f~H~~~~  181 (269)
                      .+ ++|+|+|..+.
T Consensus        57 ~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           57 SN-KECPFLHIDPE   69 (72)
T ss_dssp             SB-TTCCSBCCCCC
T ss_pred             CC-CCeeccCCCcc
Confidence            99 99999999754

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.20  E-value=7.4e-12  Score=95.78  Aligned_cols=52  Identities=35%  Similarity=0.677  Sum_probs=46.5

Q ss_pred             ccccccChhhhcCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 024288           90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY  169 (269)
Q Consensus        90 ~yKT~~C~~f~~G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~  169 (269)
                      .+|+++|++|++|.|++|+.|+|+|+   .                                    .+|++|...|.|++
T Consensus        10 ~~k~~lC~~f~~G~C~~G~~C~f~H~---~------------------------------------~~C~~f~~~G~C~~   50 (98)
T 2cqe_A           10 PKKRELCKFYITGFCARAENCPYMHG---D------------------------------------FPCKLYHTTGNCIN   50 (98)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSS---S------------------------------------SBCSHHHHTSCCSS
T ss_pred             CCCCccCcccccCcCCCCCCCCCCCC---C------------------------------------CcCcCcccCCcCCC
Confidence            36999999999999999999999998   1                                    37998877899999


Q ss_pred             CCCCccCCCCc
Q 024288          170 GDRCNFLHEDP  180 (269)
Q Consensus       170 G~~C~f~H~~~  180 (269)
                      |++|+|+|...
T Consensus        51 G~~C~f~H~~~   61 (98)
T 2cqe_A           51 GDDCMFSHDPL   61 (98)
T ss_dssp             CTTCSSBCCCC
T ss_pred             CCCCcccCCCC
Confidence            99999999954

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.05  E-value=8.1e-11  Score=84.49  Aligned_cols=60  Identities=22%  Similarity=0.702  Sum_probs=48.2

Q ss_pred             ccccChhhhcCCCCCCC-CCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 024288           92 KTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG  170 (269)
Q Consensus        92 KT~~C~~f~~G~C~~G~-~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G  170 (269)
                      |.++|++|+.|.|.+|+ .|+|+|+..+....+                           ...++.+|+.|.+ |.|.++
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~---------------------------~~~~~~vC~~flk-G~C~r~   56 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDT---------------------------NDNTVTVCMDYIK-GRCSRE   56 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBT---------------------------TTTEEEBCHHHHT-TCCCCT
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCcccccccc---------------------------cCCcceeccccCc-CCCCCC
Confidence            67899999999999999 599999987653211                           1346789997765 899998


Q ss_pred             CCCccCCCCc
Q 024288          171 DRCNFLHEDP  180 (269)
Q Consensus       171 ~~C~f~H~~~  180 (269)
                       .|.|+|..+
T Consensus        57 -~C~y~H~~~   65 (70)
T 3d2q_A           57 -KCKYFHPPA   65 (70)
T ss_dssp             -TCCSBCCCH
T ss_pred             -CcCeeCCHH
Confidence             999999864

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.00  E-value=2.6e-10  Score=87.15  Aligned_cols=51  Identities=31%  Similarity=0.705  Sum_probs=44.1

Q ss_pred             cccccccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288          152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (269)
Q Consensus       152 ~~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k  231 (269)
                      .+|+.+|++| ..|.|.+|++|+|+|+.                                                    
T Consensus        10 ~~k~~lC~~f-~~G~C~~G~~C~f~H~~----------------------------------------------------   36 (98)
T 2cqe_A           10 PKKRELCKFY-ITGFCARAENCPYMHGD----------------------------------------------------   36 (98)
T ss_dssp             SCCCSBCTTT-TTTCCSCSTTCSSBSSS----------------------------------------------------
T ss_pred             CCCCccCccc-ccCcCCCCCCCCCCCCC----------------------------------------------------
Confidence            3578899977 57999999999999981                                                    


Q ss_pred             ccccccc-ccCcCCCCCCCccccCCc
Q 024288          232 TKLCIKW-TQGQCPFGEKCHFAHGQS  256 (269)
Q Consensus       232 t~lC~~f-~~G~C~~G~~C~FaHg~~  256 (269)
                       .+|++| ++|.|++|++|+|+|...
T Consensus        37 -~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           37 -FPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             -SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             -CcCcCcccCCcCCCCCCCcccCCCC
Confidence             149999 799999999999999854

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.7e-10  Score=84.34  Aligned_cols=59  Identities=31%  Similarity=0.628  Sum_probs=47.3

Q ss_pred             cccccccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288          152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (269)
Q Consensus       152 ~~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k  231 (269)
                      .+|+.+|++|.. |.|.+|++|.|+|+...                                                .+
T Consensus         7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~------------------------------------------------~~   37 (77)
T 2d9n_A            7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDM------------------------------------------------TK   37 (77)
T ss_dssp             CCTTSBCHHHHT-TCCSCTTSSSSBCSCCT------------------------------------------------TT
T ss_pred             CCcceeCHhHcc-CcCCCCCCCCCcccccc------------------------------------------------Cc
Confidence            457789997765 89999999999998531                                                12


Q ss_pred             ccccccccc-CcCCCCCCCccccCCccccc
Q 024288          232 TKLCIKWTQ-GQCPFGEKCHFAHGQSGILC  260 (269)
Q Consensus       232 t~lC~~f~~-G~C~~G~~C~FaHg~~e~~~  260 (269)
                      +.+|++|++ |.|. |++|+|+|...+...
T Consensus        38 ~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~   66 (77)
T 2d9n_A           38 MPECYFYSKFGECS-NKECPFLHIDPESKI   66 (77)
T ss_dssp             SCBCHHHHHTCCCC-CSSCSSBCCCTTSSC
T ss_pred             CCCCcccCCCCccC-CCCeeccCCCccccC
Confidence            347999966 9999 899999998866543

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.89  E-value=4.8e-10  Score=80.44  Aligned_cols=63  Identities=19%  Similarity=0.645  Sum_probs=49.3

Q ss_pred             cccccccccCCCCCCCCC-CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 024288          154 KMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT  232 (269)
Q Consensus       154 Kt~~Ck~f~~~g~C~~G~-~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt  232 (269)
                      |..+|+.| ..|.|..|+ .|.|+|...+...                                         .....++
T Consensus         5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~~-----------------------------------------~~~~~~~   42 (70)
T 3d2q_A            5 RLEVCREY-QRGNCNRGENDCRFAHPADSTMI-----------------------------------------DTNDNTV   42 (70)
T ss_dssp             EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSCC-----------------------------------------BTTTTEE
T ss_pred             cchhCHHH-hcCCCCCCCCCCCCccCcccccc-----------------------------------------cccCCcc
Confidence            55799977 678999999 5999998643110                                         0123567


Q ss_pred             ccccccccCcCCCCCCCccccCCcccc
Q 024288          233 KLCIKWTQGQCPFGEKCHFAHGQSGIL  259 (269)
Q Consensus       233 ~lC~~f~~G~C~~G~~C~FaHg~~e~~  259 (269)
                      .+|.+|+.|.|.+| +|+|+|....|+
T Consensus        43 ~vC~~flkG~C~r~-~C~y~H~~~~L~   68 (70)
T 3d2q_A           43 TVCMDYIKGRCSRE-KCKYFHPPAHLQ   68 (70)
T ss_dssp             EBCHHHHTTCCCCT-TCCSBCCCHHHH
T ss_pred             eeccccCcCCCCCC-CcCeeCCHHHHh
Confidence            78999999999999 999999988765

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=3.1e-10  Score=86.70  Aligned_cols=61  Identities=25%  Similarity=0.674  Sum_probs=49.0

Q ss_pred             ccccChhhhcCCCCCCC-CCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 024288           92 KTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG  170 (269)
Q Consensus        92 KT~~C~~f~~G~C~~G~-~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C~~G  170 (269)
                      |.++|++|+.|.|++|+ .|+|+|+..++...+                           ...++.+|++|. .|.|.++
T Consensus        19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~---------------------------~~~~~~vC~~fl-kG~C~r~   70 (98)
T 2e5s_A           19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDT---------------------------SDNTVTVCMDYI-KGRCMRE   70 (98)
T ss_dssp             EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCT---------------------------TTCEEEBCHHHH-HTCCCCT
T ss_pred             hhhhhHHHhcCcCCCCCCCCCCcCCchhccccc---------------------------cCCccccchhhc-cCCCCCC
Confidence            78999999999999999 899999987653211                           124567999665 4899998


Q ss_pred             CCCccCCCCcc
Q 024288          171 DRCNFLHEDPA  181 (269)
Q Consensus       171 ~~C~f~H~~~~  181 (269)
                       +|+|+|....
T Consensus        71 -~C~y~H~~~~   80 (98)
T 2e5s_A           71 -KCKYFHPPAH   80 (98)
T ss_dssp             -TCCSBCCCHH
T ss_pred             -CcCccCChHH
Confidence             9999999654

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.84  E-value=8e-10  Score=79.73  Aligned_cols=56  Identities=32%  Similarity=0.691  Sum_probs=44.9

Q ss_pred             ccccccccccCCCCCCCCCCCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 024288          153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT  232 (269)
Q Consensus       153 ~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt  232 (269)
                      .++.+|++|.+ |.|.+|+.|.|+|+...                                                .++
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~------------------------------------------------~~~   44 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM------------------------------------------------TKM   44 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCCT------------------------------------------------TSC
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCcccccc------------------------------------------------ccC
Confidence            46689997765 89999999999998521                                                134


Q ss_pred             cccccccc-CcCCCCCCCccccCCccc
Q 024288          233 KLCIKWTQ-GQCPFGEKCHFAHGQSGI  258 (269)
Q Consensus       233 ~lC~~f~~-G~C~~G~~C~FaHg~~e~  258 (269)
                      .+|++|++ |.|.+ ++|+|.|.....
T Consensus        45 ~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           45 SECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             CBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             CcccccCCCCCCCC-CCeeccCCCccc
Confidence            47999977 99999 999999987653

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=9.1e-10  Score=84.06  Aligned_cols=67  Identities=21%  Similarity=0.615  Sum_probs=51.5

Q ss_pred             ccccccccccCCCCCCCCC-CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288          153 HKMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (269)
Q Consensus       153 ~Kt~~Ck~f~~~g~C~~G~-~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k  231 (269)
                      .|..+|++|.+ |.|..|+ .|+|+|.......                                         .....+
T Consensus        18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-----------------------------------------~~~~~~   55 (98)
T 2e5s_A           18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI-----------------------------------------DTSDNT   55 (98)
T ss_dssp             SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-----------------------------------------CTTTCE
T ss_pred             hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-----------------------------------------cccCCc
Confidence            45689997766 8999999 7999999643210                                         012356


Q ss_pred             cccccccccCcCCCCCCCccccCCccccccC
Q 024288          232 TKLCIKWTQGQCPFGEKCHFAHGQSGILCCL  262 (269)
Q Consensus       232 t~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~  262 (269)
                      ...|.+|++|.|.+| +|+|.|....+...+
T Consensus        56 ~~vC~~flkG~C~r~-~C~y~H~~~~l~~~~   85 (98)
T 2e5s_A           56 VTVCMDYIKGRCMRE-KCKYFHPPAHLQAKI   85 (98)
T ss_dssp             EEBCHHHHHTCCCCT-TCCSBCCCHHHHHHH
T ss_pred             cccchhhccCCCCCC-CcCccCChHHHHHHH
Confidence            678999999999999 999999988776433

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.67  E-value=9.5e-09  Score=76.03  Aligned_cols=62  Identities=23%  Similarity=0.617  Sum_probs=48.6

Q ss_pred             CccccccChhhhcCCCCCCC-CCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCC
Q 024288           89 IFFKTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC  167 (269)
Q Consensus        89 ~~yKT~~C~~f~~G~C~~G~-~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C  167 (269)
                      .+.|.++|+.|+.|.|.+|+ .|+|+|....+..-                             ..++.+|..|. .|.|
T Consensus         5 ~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~-----------------------------~~~~~vC~dfl-kG~C   54 (83)
T 3d2n_A            5 KWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVE-----------------------------NGRVIACFDSL-KGRC   54 (83)
T ss_dssp             GGGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEE-----------------------------TTEEECCHHHH-TTCC
T ss_pred             ccccchhcHHHhcCCCCCCCCCCCCcCCCcccccc-----------------------------CCceeehhHhh-hccc
Confidence            45688999999999999997 99999987643110                             12456898775 5799


Q ss_pred             CCCCCCccCCCCcc
Q 024288          168 PYGDRCNFLHEDPA  181 (269)
Q Consensus       168 ~~G~~C~f~H~~~~  181 (269)
                      ..+ .|+|.|....
T Consensus        55 ~r~-~C~y~H~~~~   67 (83)
T 3d2n_A           55 SRE-NCKYLHPPPH   67 (83)
T ss_dssp             CCS-SCSSCCCCHH
T ss_pred             cCC-CcceeCChHH
Confidence            998 9999999654

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=2.8e-09  Score=75.54  Aligned_cols=36  Identities=28%  Similarity=0.641  Sum_probs=31.2

Q ss_pred             CcccccccccccCcCCCCCCCccccCCccccccCcc
Q 024288          229 YWKTKLCIKWTQGQCPFGEKCHFAHGQSGILCCLDH  264 (269)
Q Consensus       229 ~~kt~lC~~f~~G~C~~G~~C~FaHg~~e~~~~~~~  264 (269)
                      ..+.+||.+|.+|.|++|++|+||||++||+..+..
T Consensus        17 ~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R   52 (69)
T 2d9m_A           17 TGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEER   52 (69)
T ss_dssp             CSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHH
T ss_pred             CCCcccCcccCcCCCCCCCccCCcCCHHHHhhHHHH
Confidence            346699999999999999999999999999875543

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=1.2e-08  Score=72.26  Aligned_cols=30  Identities=33%  Similarity=0.947  Sum_probs=27.9

Q ss_pred             ccccChhhhcCCCCCCCCCCCCCCCCCcCC
Q 024288           92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQ  121 (269)
Q Consensus        92 KT~~C~~f~~G~C~~G~~C~FaH~~~e~r~  121 (269)
                      |++||.+|.+|.|++|++|.|||+.+|||.
T Consensus        19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred             CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence            669999999999999999999999999964

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.50  E-value=4.5e-08  Score=72.39  Aligned_cols=63  Identities=19%  Similarity=0.510  Sum_probs=48.5

Q ss_pred             ccccccccccCCCCCCCCC-CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024288          153 HKMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (269)
Q Consensus       153 ~Kt~~Ck~f~~~g~C~~G~-~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~k  231 (269)
                      .+..+|+.|.+ |.|..|+ .|+|+|..... ..                                          ...+
T Consensus         7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~-~~------------------------------------------~~~~   42 (83)
T 3d2n_A            7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSC-QV------------------------------------------ENGR   42 (83)
T ss_dssp             GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTC-CE------------------------------------------ETTE
T ss_pred             ccchhcHHHhc-CCCCCCCCCCCCcCCCccc-cc------------------------------------------cCCc
Confidence            45679998876 8999997 99999996421 00                                          1124


Q ss_pred             cccccccccCcCCCCCCCccccCCccccc
Q 024288          232 TKLCIKWTQGQCPFGEKCHFAHGQSGILC  260 (269)
Q Consensus       232 t~lC~~f~~G~C~~G~~C~FaHg~~e~~~  260 (269)
                      ...|.+|++|.|.++ .|+|.|+...+..
T Consensus        43 ~~vC~dflkG~C~r~-~C~y~H~~~~l~~   70 (83)
T 3d2n_A           43 VIACFDSLKGRCSRE-NCKYLHPPPHLKT   70 (83)
T ss_dssp             EECCHHHHTTCCCCS-SCSSCCCCHHHHH
T ss_pred             eeehhHhhhccccCC-CcceeCChHHHHH
Confidence            457999999999998 9999999877654

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.50  E-value=1e-07  Score=71.34  Aligned_cols=62  Identities=21%  Similarity=0.584  Sum_probs=48.2

Q ss_pred             CccccccChhhhcCCCCCCC-CCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCC
Q 024288           89 IFFKTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC  167 (269)
Q Consensus        89 ~~yKT~~C~~f~~G~C~~G~-~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~C  167 (269)
                      .+.+.++|+.|+.|.|.+|+ .|+|+|....+...                             ..++..|..|. .|.|
T Consensus        13 ~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~-----------------------------~~~~~vC~dfl-kG~C   62 (89)
T 2rpp_A           13 KWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVE-----------------------------NGRVIACFDSL-KGRC   62 (89)
T ss_dssp             SSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB-----------------------------TTBEEBCHHHH-HTCC
T ss_pred             CcchhhhchHHhcCCCCCCCCCCCCcCCCcccccc-----------------------------CCceeeehhhh-hCcC
Confidence            34578899999999999998 99999987754210                             12456898775 5799


Q ss_pred             CCCCCCccCCCCcc
Q 024288          168 PYGDRCNFLHEDPA  181 (269)
Q Consensus       168 ~~G~~C~f~H~~~~  181 (269)
                      ..+ .|+|.|....
T Consensus        63 ~r~-~Cky~H~~~h   75 (89)
T 2rpp_A           63 SRE-NCKYLHPPTH   75 (89)
T ss_dssp             CCT-TCCSBCCCHH
T ss_pred             CCC-CcceecCHHH
Confidence            987 9999999653

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.25  E-value=2e-07  Score=69.75  Aligned_cols=62  Identities=19%  Similarity=0.518  Sum_probs=47.7

Q ss_pred             cccccccccCCCCCCCCC-CCccCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 024288          154 KMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT  232 (269)
Q Consensus       154 Kt~~Ck~f~~~g~C~~G~-~C~f~H~~~~~~r~~~~~~~e~s~~s~g~~~p~~~~g~~~~~~e~~~p~~~~~~~~~~~kt  232 (269)
                      +..+|+.|.+ |.|..++ .|+|+|...... .                                          ..-+.
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~-v------------------------------------------~~~~~   51 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQ-V------------------------------------------ENGRV   51 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSSC-C------------------------------------------BTTBE
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCcccc-c------------------------------------------cCCce
Confidence            4568998876 8999998 999999964310 0                                          01245


Q ss_pred             ccccccccCcCCCCCCCccccCCccccc
Q 024288          233 KLCIKWTQGQCPFGEKCHFAHGQSGILC  260 (269)
Q Consensus       233 ~lC~~f~~G~C~~G~~C~FaHg~~e~~~  260 (269)
                      ..|.+|++|.|.++ .|+|.|....+..
T Consensus        52 ~vC~dflkG~C~r~-~Cky~H~~~hl~~   78 (89)
T 2rpp_A           52 IACFDSLKGRCSRE-NCKYLHPPTHLKT   78 (89)
T ss_dssp             EBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred             eeehhhhhCcCCCC-CcceecCHHHHHH
Confidence            57999999999997 9999999876654

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.99  E-value=7.7e-06  Score=70.54  Aligned_cols=22  Identities=27%  Similarity=0.762  Sum_probs=19.6

Q ss_pred             ccccccCcCCCCCCCccccCCcc
Q 024288          235 CIKWTQGQCPFGEKCHFAHGQSG  257 (269)
Q Consensus       235 C~~f~~G~C~~G~~C~FaHg~~e  257 (269)
                      |.+|..|.|.+ .+|.-.|...+
T Consensus       178 C~~Fl~G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          178 CEHFTRGNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             CHHHHTTCCCC-SSCSSCCCTTS
T ss_pred             cchhhcCCcCC-CCccCccCccC
Confidence            99999999999 89999997644

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.56  E-value=0.00051  Score=45.06  Aligned_cols=28  Identities=29%  Similarity=0.642  Sum_probs=25.0

Q ss_pred             ccccccccccCCCCCCCCCCCccCCCCc
Q 024288          153 HKMKLCKKFYNGEECPYGDRCNFLHEDP  180 (269)
Q Consensus       153 ~Kt~~Ck~f~~~g~C~~G~~C~f~H~~~  180 (269)
                      .++.+|..|...|+|++|.+|.+.|+..
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            3567999999999999999999999963

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.44  E-value=0.0011  Score=43.52  Aligned_cols=27  Identities=30%  Similarity=0.699  Sum_probs=24.8

Q ss_pred             cccccChhhh-cCCCCCCCCCCCCCCCC
Q 024288           91 FKTRLCAKFK-HGACRNGENCNFAHGME  117 (269)
Q Consensus        91 yKT~~C~~f~-~G~C~~G~~C~FaH~~~  117 (269)
                      .++.||..|. -|.|++|..|.+.|+++
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            4888999998 79999999999999976

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=95.27  E-value=0.00069  Score=49.33  Aligned_cols=21  Identities=29%  Similarity=0.705  Sum_probs=16.4

Q ss_pred             cccChhhhcCCCCCCCCCCCCCCC
Q 024288           93 TRLCAKFKHGACRNGENCNFAHGM  116 (269)
Q Consensus        93 T~~C~~f~~G~C~~G~~C~FaH~~  116 (269)
                      .+.|+++..  |.+ ..|.|.|..
T Consensus         9 ~e~CKf~~~--Ctn-~~C~f~Hp~   29 (80)
T 2lhn_A            9 LEQCKFGTH--CTN-KRCKYRHAR   29 (80)
Confidence            357977775  888 899999954

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=93.86  E-value=0.034  Score=47.87  Aligned_cols=45  Identities=22%  Similarity=0.624  Sum_probs=37.1

Q ss_pred             ccccChhhhc-----CCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 024288           92 KTRLCAKFKH-----GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE  166 (269)
Q Consensus        92 KT~~C~~f~~-----G~C~~G~~C~FaH~~~e~r~p~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~Kt~~Ck~f~~~g~  166 (269)
                      =-++|.+| .     |.|++++.|...|                                          +|++| ..|.
T Consensus       150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLH------------------------------------------IC~~F-l~G~  185 (229)
T 3u9g_A          150 LPEICKSY-KGEGRKQTCGQPQPCERLH------------------------------------------ICEHF-TRGN  185 (229)
T ss_dssp             SCCBCTTC-CCSSSCCSCSSSSCCCSBC------------------------------------------SCHHH-HTTC
T ss_pred             CchHHHHh-CCCCCCCcCCCCCCCccee------------------------------------------ccchh-hcCC
Confidence            34789999 5     4899999999888                                          79855 5679


Q ss_pred             CCCCCCCccCCCCcc
Q 024288          167 CPYGDRCNFLHEDPA  181 (269)
Q Consensus       167 C~~G~~C~f~H~~~~  181 (269)
                      |.+ ..|.-.|+..+
T Consensus       186 C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          186 CSY-LNCLRSHNLMD  199 (229)
T ss_dssp             CCC-SSCSSCCCTTS
T ss_pred             cCC-CCccCccCccC
Confidence            999 79999999744

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=93.66  E-value=0.013  Score=51.05  Aligned_cols=25  Identities=28%  Similarity=0.796  Sum_probs=22.1

Q ss_pred             ccccccccCcCCCCCCCccccCCcc
Q 024288          233 KLCIKWTQGQCPFGEKCHFAHGQSG  257 (269)
Q Consensus       233 ~lC~~f~~G~C~~G~~C~FaHg~~e  257 (269)
                      .+|.||.+|.|.+|+.|.|.|....
T Consensus        71 ~~C~ffakG~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           71 FFCLFFAKGMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             SBCHHHHTTCCSCGGGCSSBBSCCC
T ss_pred             eEcCccccCCCCCCCCCCccCCCCC
Confidence            3799998899999999999997544

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.73  E-value=0.049  Score=47.44  Aligned_cols=25  Identities=28%  Similarity=0.716  Sum_probs=22.3

Q ss_pred             cccChhhhcCCCCCCCCCCCCCCCC
Q 024288           93 TRLCAKFKHGACRNGENCNFAHGME  117 (269)
Q Consensus        93 T~~C~~f~~G~C~~G~~C~FaH~~~  117 (269)
                      ..+|.+|..|.|++|+.|.|.|.+.
T Consensus        70 ~~~C~ffakG~C~~G~~C~y~H~lP   94 (240)
T 3u1l_A           70 LFFCLFFAKGMCCLGPKCEYLHHIP   94 (240)
T ss_dssp             CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred             CeEcCccccCCCCCCCCCCccCCCC
Confidence            3599999999999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	3e-10
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	5e-08
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	1e-05
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	1e-08
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	1e-06
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	6e-06
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-08
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	3e-08
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	1e-05

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 87  TNIFFKTRLCAKF-KHGACRNGENCNFAHGMEDLRQP 122
           T+  +KT LC  + + G CR G  C FAHG+ +LRQ 
Sbjct: 3   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 39

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (109), Expect = 5e-08
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQS 256
           +KT+LC  +++ G+C +G KC FAHG  
Sbjct: 7   YKTELCRTYSESGRCRYGAKCQFAHGLG 34

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 154 KMKLCKKFYNGEECPYGDRCNFLH 177
           K +LC+ +     C YG +C F H
Sbjct: 8   KTELCRTYSESGRCRYGAKCQFAH 31

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (113), Expect = 1e-08
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQS 256
           +KT+LC  +   G CP+G +CHF H   
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHNAD 33

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 1e-06
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 153 HKMKLCKKFYNGEECPYGDRCNFLH 177
           +K +LC+ F+    CPYG RC+F+H
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIH 30

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 6e-06
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMED 118
           +KT LC  F   G C  G  C+F H  ++
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHNADE 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 2e-08
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMEDLR 120
           +KT LC  F + G C+ GE C FAHG  +LR
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELR 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 3e-08
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQS 256
           +KT+LC  + + G C +GEKC FAHG  
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFH 31

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 154 KMKLCKKFYNGEECPYGDRCNFLH 177
           K +LC+ F     C YG++C F H
Sbjct: 5   KTELCRPFEESGTCKYGEKCQFAH 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.24
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.2
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.1
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.09
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.07
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.99
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	98.38
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.94
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	96.03
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	96.03
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	94.47
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	89.22

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.7e-12  Score=81.43  Aligned_cols=36  Identities=47%  Similarity=1.003  Sum_probs=32.8

Q ss_pred             CCCccccccChhhh-cCCCCCCCCCCCCCCCCCcCCC
Q 024288           87 TNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQP  122 (269)
Q Consensus        87 ~~~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e~r~p  122 (269)
                      .+.+|||++|++|. .|.|++|+.|.|||+.+|||.+
T Consensus         3 ~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           3 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            56789999999998 6999999999999999999864

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.7e-12  Score=79.57  Aligned_cols=34  Identities=47%  Similarity=1.071  Sum_probs=31.0

Q ss_pred             CCccccccChhhh-cCCCCCCCCCCCCCCCCCcCC
Q 024288           88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQ  121 (269)
Q Consensus        88 ~~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e~r~  121 (269)
                      +.+|||++|++|. .|.|++|+.|+|||+.+|||.
T Consensus         1 ~~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           1 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             CTTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            3579999999997 799999999999999999974

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=2.1e-11  Score=76.38  Aligned_cols=33  Identities=39%  Similarity=0.910  Sum_probs=30.9

Q ss_pred             CCccccccccc-ccCcCCCCCCCccccCCccccc
Q 024288          228 VYWKTKLCIKW-TQGQCPFGEKCHFAHGQSGILC  260 (269)
Q Consensus       228 ~~~kt~lC~~f-~~G~C~~G~~C~FaHg~~e~~~  260 (269)
                      ..|||++|++| ..|.|++|++|+||||++||+.
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhcC
Confidence            57999999999 7899999999999999999975

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.9e-12  Score=76.80  Aligned_cols=33  Identities=42%  Similarity=0.941  Sum_probs=30.5

Q ss_pred             CCccccccccc-ccCcCCCCCCCccccCCccccc
Q 024288          228 VYWKTKLCIKW-TQGQCPFGEKCHFAHGQSGILC  260 (269)
Q Consensus       228 ~~~kt~lC~~f-~~G~C~~G~~C~FaHg~~e~~~  260 (269)
                      ..|||++|++| ..|.|++|++|+||||++||+.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            47999999999 7899999999999999999974

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.6e-11  Score=74.02  Aligned_cols=31  Identities=35%  Similarity=0.825  Sum_probs=28.0

Q ss_pred             CCccccccChhhh-cCCCCCCCCCCCCCCCCC
Q 024288           88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMED  118 (269)
Q Consensus        88 ~~~yKT~~C~~f~-~G~C~~G~~C~FaH~~~e  118 (269)
                      ..+|||++|+.|. .|.|.+|++|+|||+.+|
T Consensus         3 hpkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           3 HPKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CTTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            3579999999998 799999999999999875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.4e-11  Score=72.57  Aligned_cols=30  Identities=43%  Similarity=1.011  Sum_probs=27.8

Q ss_pred             CCccccccccc-ccCcCCCCCCCccccCCcc
Q 024288          228 VYWKTKLCIKW-TQGQCPFGEKCHFAHGQSG  257 (269)
Q Consensus       228 ~~~kt~lC~~f-~~G~C~~G~~C~FaHg~~e  257 (269)
                      +.|||+||++| ..|.|++|++|+|+||+.|
T Consensus         4 pkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           4 PKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            36899999999 8899999999999999875

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8.7e-08  Score=53.66  Aligned_cols=27  Identities=33%  Similarity=0.704  Sum_probs=24.2

Q ss_pred             CcccccccccccCcCCCCCCCccccCC
Q 024288          229 YWKTKLCIKWTQGQCPFGEKCHFAHGQ  255 (269)
Q Consensus       229 ~~kt~lC~~f~~G~C~~G~~C~FaHg~  255 (269)
                      ..|..+|++|.+|+|.+|++|.|.|.+
T Consensus         3 ~kkkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           3 PKKRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             chhhhhhhhheeeeecCCcCcccccCC
Confidence            357789999999999999999999964

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.2e-06  Score=47.89  Aligned_cols=25  Identities=40%  Similarity=0.878  Sum_probs=23.2

Q ss_pred             ccccChhhhcCCCCCCCCCCCCCCC
Q 024288           92 KTRLCAKFKHGACRNGENCNFAHGM  116 (269)
Q Consensus        92 KT~~C~~f~~G~C~~G~~C~FaH~~  116 (269)
                      |.++|++|.+|.|.+|++|.|.|..
T Consensus         5 kkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           5 KRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhheeeeecCCcCcccccCC
Confidence            7789999999999999999999963

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.001  Score=43.00  Aligned_cols=23  Identities=35%  Similarity=0.820  Sum_probs=20.0

Q ss_pred             ccccc-ccCcCCCCCCCccccCCc
Q 024288          234 LCIKW-TQGQCPFGEKCHFAHGQS  256 (269)
Q Consensus       234 lC~~f-~~G~C~~G~~C~FaHg~~  256 (269)
                      .|++| ..+.|-.|++|+|+|..-
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pL   25 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPL   25 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CcceeecCCcccCCCcccccCCcc
Confidence            49999 777999999999999643

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0008  Score=43.51  Aligned_cols=23  Identities=35%  Similarity=0.774  Sum_probs=21.2

Q ss_pred             ccccccCCCCCCCCCCCccCCCC
Q 024288          157 LCKKFYNGEECPYGDRCNFLHED  179 (269)
Q Consensus       157 ~Ck~f~~~g~C~~G~~C~f~H~~  179 (269)
                      +||+|+.+..|-.|++|+|+|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            59999999999999999999974

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.0044  Score=36.13  Aligned_cols=26  Identities=31%  Similarity=0.735  Sum_probs=23.4

Q ss_pred             ccccccccccCCCCCCCCCCCccCCC
Q 024288          153 HKMKLCKKFYNGEECPYGDRCNFLHE  178 (269)
Q Consensus       153 ~Kt~~Ck~f~~~g~C~~G~~C~f~H~  178 (269)
                      ..+.+|.+|...|+|+.|..|...|+
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCc
Confidence            34579999999999999999999997

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.073  Score=30.77  Aligned_cols=25  Identities=32%  Similarity=0.753  Sum_probs=22.8

Q ss_pred             ccccChhhh-cCCCCCCCCCCCCCCC
Q 024288           92 KTRLCAKFK-HGACRNGENCNFAHGM  116 (269)
Q Consensus        92 KT~~C~~f~-~G~C~~G~~C~FaH~~  116 (269)
                      .|.+|..|. -|=|..|.+|.-+|++
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCcC
Confidence            678999998 7999999999999974